BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3970
(104 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UBB5|MBD2_HUMAN Methyl-CpG-binding domain protein 2 OS=Homo sapiens GN=MBD2 PE=1
SV=1
Length = 411
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 22 KRYECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGVSFD 81
KR +CP LPPGW +EEV R GLS GK DV+Y+SP GKK R++ ++ + + + SFD
Sbjct: 148 KRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFD 207
Query: 82 FRSGKLNSLQKHRNKQR 98
FR+GK+ + +NKQR
Sbjct: 208 FRTGKMMPSKLQKNKQR 224
>sp|Q9Z2E1|MBD2_MOUSE Methyl-CpG-binding domain protein 2 OS=Mus musculus GN=Mbd2 PE=2
SV=2
Length = 414
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/77 (49%), Positives = 53/77 (68%)
Query: 22 KRYECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGVSFD 81
KR +CP LPPGW +EEV R GLS GK DV+Y+SP GKK R++ ++ + + + SFD
Sbjct: 151 KRMDCPALPPGWKKEEVIRKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNAVDLSSFD 210
Query: 82 FRSGKLNSLQKHRNKQR 98
FR+GK+ + +NKQR
Sbjct: 211 FRTGKMMPSKLQKNKQR 227
>sp|O95983|MBD3_HUMAN Methyl-CpG-binding domain protein 3 OS=Homo sapiens GN=MBD3 PE=1
SV=1
Length = 291
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 56/78 (71%)
Query: 21 KKRYECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGVSF 80
+KR+ECP LP GW REEV R GLS G DVFYYSP GKK R++ ++ + + G++ +F
Sbjct: 3 RKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTF 62
Query: 81 DFRSGKLNSLQKHRNKQR 98
DFR+GK+ + ++++QR
Sbjct: 63 DFRTGKMLMSKMNKSRQR 80
>sp|Q9Z2D8|MBD3_MOUSE Methyl-CpG-binding domain protein 3 OS=Mus musculus GN=Mbd3 PE=1
SV=1
Length = 285
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 21 KKRYECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGVSF 80
+KR+ECP LP GW REEV R GLS G DVFYYSP GKK R++ ++ + + G++ +F
Sbjct: 3 RKRWECPALPQGWEREEVPRRSGLSAGHRDVFYYSPSGKKFRSKPQLARYLGGSMDLSTF 62
Query: 81 DFRSGK--LNSLQKHRNKQR 98
DFR+GK +N + K R + R
Sbjct: 63 DFRTGKMLMNKMNKSRQRVR 82
>sp|Q9Z2E2|MBD1_MOUSE Methyl-CpG-binding domain protein 1 OS=Mus musculus GN=Mbd1 PE=1
SV=2
Length = 636
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 25 ECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGVSFDFRS 84
+CP L PGW R E R G S G+ D++Y SP G+K+R++ E+ + + FDFR
Sbjct: 7 DCPALGPGWKRRESFRKSGASFGRSDIYYQSPTGEKIRSKVELTRYLGPACDLTLFDFRQ 66
Query: 85 GKL 87
G L
Sbjct: 67 GTL 69
>sp|Q9UIS9|MBD1_HUMAN Methyl-CpG-binding domain protein 1 OS=Homo sapiens GN=MBD1 PE=1
SV=2
Length = 605
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 25 ECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGVSFDFRS 84
+CP L PGW R EV R G + G+ D +Y SP G ++R++ E+ + + FDF+
Sbjct: 7 DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66
Query: 85 GKL 87
G L
Sbjct: 67 GIL 69
>sp|Q9LTJ1|MBD6_ARATH Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis
thaliana GN=MBD6 PE=1 SV=1
Length = 225
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 29 LPPGWYREEVTRNKGLSVGKVDVFYYSP-CGKKLRTRSEVL 68
LPPGW E+ R G + G VD +YY P G+K R+R+EVL
Sbjct: 81 LPPGWRVEDKIRTSGATAGSVDKYYYEPNTGRKFRSRTEVL 121
>sp|Q9SNC0|MBD5_ARATH Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis
thaliana GN=MBD5 PE=1 SV=1
Length = 182
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 29 LPPGWYREEVTRNKGLSVGKVDVFYYSP-CGKKLRTRSEVLQVIRGNIP 76
LPP W E R G G VD FYY P G+K R+++EVL + P
Sbjct: 35 LPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSKNEVLYYLEHGTP 83
>sp|Q9Z2D6|MECP2_MOUSE Methyl-CpG-binding protein 2 OS=Mus musculus GN=Mecp2 PE=1 SV=1
Length = 484
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 24 YECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVL 68
Y+ P LP GW R+ R G S GK DV+ +P GK R++ E++
Sbjct: 95 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELI 139
>sp|Q00566|MECP2_RAT Methyl-CpG-binding protein 2 OS=Rattus norvegicus GN=Mecp2 PE=1
SV=1
Length = 492
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 24 YECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVL 68
Y+ P LP GW R+ R G S GK DV+ +P GK R++ E++
Sbjct: 95 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELI 139
>sp|Q95LG8|MECP2_MACFA Methyl-CpG-binding protein 2 OS=Macaca fascicularis GN=MECP2 PE=2
SV=1
Length = 486
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 24 YECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVL 68
Y+ P LP GW R+ R G S GK DV+ +P GK R++ E++
Sbjct: 95 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELI 139
>sp|P51608|MECP2_HUMAN Methyl-CpG-binding protein 2 OS=Homo sapiens GN=MECP2 PE=1 SV=1
Length = 486
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 24 YECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVL 68
Y+ P LP GW R+ R G S GK DV+ +P GK R++ E++
Sbjct: 95 YDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELI 139
>sp|Q9UIF8|BAZ2B_HUMAN Bromodomain adjacent to zinc finger domain protein 2B OS=Homo
sapiens GN=BAZ2B PE=1 SV=3
Length = 2168
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 32 GWYREEVTRNKGLSVGKV--DVFYYSPCGKKLRTRSEVLQVI-RGNIPGVSFD 81
GW RE RN G G++ +V YY+PCGKKLR EV++ + R I +S D
Sbjct: 752 GWQRETRIRNFG---GRLQGEVAYYAPCGKKLRQYPEVIKYLSRNGIMDISRD 801
>sp|Q9LYB9|MBD4_ARATH Methyl-CpG-binding domain-containing protein 4 OS=Arabidopsis
thaliana GN=MBD4 PE=2 SV=1
Length = 186
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 27 PQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGN 74
P+ P G+ R V R K+D +Y++P GKKLR+R+E+ + N
Sbjct: 91 PKTPKGFKRSLVLRK---DYSKMDTYYFTPTGKKLRSRNEIAAFVEAN 135
>sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain protein 2B OS=Gallus
gallus GN=BAZ2B PE=2 SV=1
Length = 2130
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 32 GWYREEVTRNKGLSVGKV--DVFYYSPCGKKLRTRSEVLQVIR 72
GW RE RN G G++ +V Y++PCGKKLR EV++ ++
Sbjct: 700 GWQRETRIRNFG---GRLQGEVAYFAPCGKKLRQYPEVVKGVQ 739
>sp|Q5XEN5|MBD1_ARATH Methyl-CpG-binding domain-containing protein 1 OS=Arabidopsis
thaliana GN=MBD1 PE=2 SV=1
Length = 204
Score = 35.8 bits (81), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 27 PQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGN 74
P+ P G+ R + R K+D +Y +P GKKL++R+E+ I N
Sbjct: 118 PRTPRGFKRSLILRK---DYSKMDAYYITPTGKKLKSRNEIAAFIDAN 162
>sp|B7ZS37|BAZ2A_XENLA Bromodomain adjacent to zinc finger domain protein 2A OS=Xenopus
laevis GN=baz2a PE=2 SV=1
Length = 1698
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 26 CPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGN 74
C L GW R EV KG + + +YY+PCGK+++ EV++ + N
Sbjct: 425 CFPLQHGW-RREVRIKKGSHRWQGETWYYAPCGKRMKQFPEVIKYLSKN 472
>sp|O95243|MBD4_HUMAN Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1
SV=1
Length = 580
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 25 EC-PQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGN----IPGVS 79
EC +P GW R R G + G+ DV++ SP G K R++S + + N +
Sbjct: 81 ECRKSVPCGWERVVKQRLFGKTAGRFDVYFISPQGLKFRSKSSLANYLHKNGETSLKPED 140
Query: 80 FDF 82
FDF
Sbjct: 141 FDF 143
>sp|Q91YE5|BAZ2A_MOUSE Bromodomain adjacent to zinc finger domain protein 2A OS=Mus
musculus GN=Baz2a PE=1 SV=2
Length = 1889
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 32 GWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNI 75
GW R EV KG + + +YY PCGK+++ EV++ + N+
Sbjct: 551 GW-RREVRIKKGSHRWQGETWYYGPCGKRMKQFPEVIKYLSRNV 593
>sp|Q9UIF9|BAZ2A_HUMAN Bromodomain adjacent to zinc finger domain protein 2A OS=Homo
sapiens GN=BAZ2A PE=1 SV=4
Length = 1905
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 32 GWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNI 75
GW R EV KG + + +YY PCGK+++ EV++ + N+
Sbjct: 559 GW-RREVRIKKGSHRWQGETWYYGPCGKRMKQFPEVIKYLSRNV 601
>sp|Q9FZP6|MBD12_ARATH Putative methyl-CpG-binding domain protein 12 OS=Arabidopsis
thaliana GN=MBD12 PE=3 SV=1
Length = 155
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 27 PQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEV 67
P +P GW R R++ S DV+Y+ P G++LR+ +EV
Sbjct: 61 PPIPTGWSRSVHIRSE--STKFADVYYFPPSGERLRSSAEV 99
>sp|Q9Z2D7|MBD4_MOUSE Methyl-CpG-binding domain protein 4 OS=Mus musculus GN=Mbd4 PE=1
SV=1
Length = 554
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 29 LPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTR 64
+P GW R R G + GK DV++ SP G K R++
Sbjct: 73 VPCGWERVVKQRLSGKTAGKFDVYFISPQGLKFRSK 108
>sp|Q8LA53|MBD2_ARATH Methyl-CpG-binding domain-containing protein 2 OS=Arabidopsis
thaliana GN=MBD2 PE=1 SV=1
Length = 272
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 30 PPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGN 74
P GW R R +G DV+Y +P GKKLR+ EV + + N
Sbjct: 129 PAGWQRLLRIRGEG-GTRFADVYYVAPSGKKLRSTVEVQKYLNDN 172
>sp|P34544|MET2_CAEEL Probable histone-lysine N-methyltransferase met-2 OS=Caenorhabditis
elegans GN=met-2 PE=3 SV=4
Length = 1300
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 32 GWYREEVTRNKGLSVGKV--DVFYYSPCGKKLRTRSEV---LQVIRG--NIPGVSFDFR 83
GW R T + G G V ++ Y+SPCG L S+V + V R I SFD R
Sbjct: 843 GWRRIMYTMSTGKKRGAVKKNIIYFSPCGAALHQISDVSEYIHVTRSLLTIDCFSFDAR 901
>sp|A3CUA0|Y1017_METMJ UPF0095 protein Memar_1017 OS=Methanoculleus marisnigri (strain
ATCC 35101 / DSM 1498 / JR1) GN=Memar_1017 PE=3 SV=1
Length = 408
Score = 30.4 bits (67), Expect = 3.1, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 44 LSVGKVDVFYYSPCGKKLR--TRSEVLQVIRGNIPGV 78
L V ++D YSP GK + +R E+++ +R +P V
Sbjct: 232 LQVAEIDFVAYSPRGKSVEEMSRKEIVKALRNKVPAV 268
>sp|Q32KD2|SETB1_DROME Histone-lysine N-methyltransferase eggless OS=Drosophila
melanogaster GN=egg PE=1 SV=1
Length = 1262
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 32 GWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRG--NIPGV-SFDF 82
GW R V R K K V Y PCGK LR+ +EV + +R N+ V +FDF
Sbjct: 831 GWERL-VMRQKT----KKSVVYKGPCGKSLRSLAEVHRYLRATENVLNVDNFDF 879
>sp|B9KA88|META_THENN Homoserine O-succinyltransferase OS=Thermotoga neapolitana (strain
ATCC 49049 / DSM 4359 / NS-E) GN=metA PE=3 SV=1
Length = 304
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 23 RYECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVI 71
+YE PQ G YR VT+ L G D F+++P + R E ++ I
Sbjct: 157 KYELPQKLSGVYRHRVTKETVLFRGH-DDFFWAPHSRYTEVRKEDIEKI 204
>sp|O75360|PROP1_HUMAN Homeobox protein prophet of Pit-1 OS=Homo sapiens GN=PROP1 PE=1
SV=2
Length = 226
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 28 QLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGVSFDF 82
Q P W RE + R+ GLS ++ V++ + K+ + +LQ + P F
Sbjct: 92 QYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPLAHLSPAAFSSF 146
>sp|Q3LU41|PROP1_THEGE Homeobox protein prophet of Pit-1 OS=Theropithecus gelada GN=PROP1
PE=3 SV=1
Length = 226
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 28 QLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGVSFDF 82
Q P W RE + R+ GLS ++ V++ + K+ + +LQ + P F
Sbjct: 92 QYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPLAHLSPAAFSSF 146
>sp|A3CXI2|RADB_METMJ DNA repair and recombination protein RadB OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=radB
PE=3 SV=1
Length = 224
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 10 LVSNLLKMLPTKKRYECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPC----GKKLRTRS 65
L +++K+L K+Y+ P L +V R++ +G + + S KK R
Sbjct: 138 LSHHMIKLLGLAKKYDIPVLITNQIYMDVERDRVAGLGGTALEHLSKAIIRLEKKDSARR 197
Query: 66 EVLQVIRGNIPGVSFDF 82
+L+ R G+SFDF
Sbjct: 198 AMLRKHRSRPEGLSFDF 214
>sp|Q3LU39|PROP1_GORGO Homeobox protein prophet of Pit-1 OS=Gorilla gorilla gorilla
GN=PROP1 PE=3 SV=1
Length = 225
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 28 QLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGVSFDF 82
Q P W RE + R+ GLS ++ V++ + K+ + +LQ + P F
Sbjct: 92 QYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQECSLLQPLAHLSPAAFSSF 146
>sp|Q3LU40|PROP1_CEBAP Homeobox protein prophet of Pit-1 OS=Cebus apella GN=PROP1 PE=3
SV=1
Length = 226
Score = 28.9 bits (63), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 28 QLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGVSFDFRSG 85
Q P W RE + R+ GLS ++ V++ + K+ + +LQ + P F G
Sbjct: 92 QYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPLAHLSPATFSGFLPG 149
>sp|Q3LU38|PROP1_ALOBE Homeobox protein prophet of Pit-1 OS=Alouatta belzebul GN=PROP1
PE=3 SV=1
Length = 226
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 28 QLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGVSFDF 82
Q P W RE + R+ GLS ++ V++ + K+ + +LQ + P F
Sbjct: 92 QYPDIWARESLARDTGLSEARIQVWFQNRRAKQRKQERSLLQPLAHLSPATFSGF 146
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,005,020
Number of Sequences: 539616
Number of extensions: 1432295
Number of successful extensions: 2770
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2739
Number of HSP's gapped (non-prelim): 35
length of query: 104
length of database: 191,569,459
effective HSP length: 73
effective length of query: 31
effective length of database: 152,177,491
effective search space: 4717502221
effective search space used: 4717502221
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)