RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3970
         (104 letters)



>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional
          repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 75

 Score = 80.6 bits (199), Expect = 3e-22
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 25 ECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGVSFDFRS 84
          +CP L PGW R EV R  G + G+ D +Y SP G ++R++ E+ + +        FDF+ 
Sbjct: 7  DCPALGPGWKRREVFRKSGATCGRSDTYYQSPTGDRIRSKVELTRYLGPACDLTLFDFKQ 66

Query: 85 GKL 87
          G L
Sbjct: 67 GIL 69


>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 68.8 bits (168), Expect = 2e-17
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 23 RYECPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPGV---- 78
           Y+ P LP GW R+   R  G S GK DV+  +P GK  R++ E++              
Sbjct: 18 MYDDPTLPEGWTRKLKQRKSGRSAGKYDVYLINPQGKAFRSKVELIAYFEKVGDTSLDPN 77

Query: 79 SFDFRS 84
           FDF  
Sbjct: 78 DFDFTV 83


>d2djfa1 b.61.5.1 (A:1-118) Dipeptidyl peptidase I (cathepsin C),
           exclusion domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 118

 Score = 24.4 bits (53), Expect = 2.5
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 26  CPQLPPGWYREEVTRNKGLSVGK 48
           C +   GW  + + RN     GK
Sbjct: 94  CNETMTGWVHDVLGRNWACFTGK 116


>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio
           proteolyticus [TaxId: 671]}
          Length = 531

 Score = 24.5 bits (52), Expect = 3.2
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 9   SLVSNLLKMLPTKKRYE-CPQLPPGWYREEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEV 67
           ++ + +L +          P +P  W   EVTR    +   + V       K +++ +  
Sbjct: 448 AVTNYILGVQSGFTGLSVDPCIPSDWPGFEVTRQWRGATYHIQVENPDHVSKGVKSITLN 507

Query: 68  LQVIRGNIPGVS 79
              I+G IP  +
Sbjct: 508 GAPIQGRIPPQA 519


>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 34

 Score = 22.3 bits (48), Expect = 4.8
 Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 7/27 (25%)

Query: 28 QLPPGWYREEVTRNKGLSVGKVDVFYY 54
          +LPPGW  + ++R+ G       V+Y+
Sbjct: 1  KLPPGW-EKRMSRSSG------RVYYF 20


>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
           subunit) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 473

 Score = 23.8 bits (51), Expect = 5.2
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 35  REEVTRNKGLSVGKVDVFYYSPCGKKLRTRSEVLQVIRGNIPG 77
           R+EV RNK  ++GK+     +     LR  SE +  ++G  P 
Sbjct: 379 RKEVIRNKIRAIGKM-----ARVFSVLREESESVLTLKGLTPT 416


>d1uaia_ b.29.1.18 (A:) Polyguluronate lyase {Corynebacterium sp.
           ALY-1 [TaxId: 101519]}
          Length = 223

 Score = 23.3 bits (50), Expect = 6.8
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 6/49 (12%)

Query: 51  VFYYSPCGKKLR----TRSEVLQVIRGNIPGVSFDFRSG--KLNSLQKH 93
            F  +  G         RSE+ ++  G     S+   SG   +   +  
Sbjct: 54  QFRAAVNGVTTSGSGYPRSELREMTDGGEEKASWSATSGTHTMVFREAF 102


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.412 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 374,298
Number of extensions: 15214
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 37
Number of HSP's successfully gapped: 8
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)