BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3972
(77 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BG3|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
pdb|3BG3|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus)
Length = 718
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASK 59
+V +E+GKTL IKALA + DL + G+R+VFFE+NGQLRS+ ++D +A K
Sbjct: 589 EVELERGKTLHIKALAVS-DLNRAGQRQVFFELNGQLRSILVKDTQAMK 636
>pdb|3BG9|A Chain A, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|B Chain B, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|C Chain C, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
pdb|3BG9|D Chain D, Crystal Structure Of Human Pyruvate Carboxylase (Missing
The Biotin Carboxylase Domain At The N-Terminus) F1077a
Mutant
Length = 718
Score = 58.9 bits (141), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/49 (55%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASK 59
+V +E+GKTL IKALA + DL + G+R+V FE+NGQLRS+ ++D +A K
Sbjct: 589 EVELERGKTLHIKALAVS-DLNRAGQRQVAFELNGQLRSILVKDTQAMK 636
>pdb|4HNT|A Chain A, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|B Chain B, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|C Chain C, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNT|D Chain D, Crystal Structure Of F403a Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD---------KEASKVR 61
++ I+KGK L IK L T ++ +NG R +++ MNGQ R ++I+D K +
Sbjct: 1040 EIEIDKGKRLIIK-LETISEPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1098
Query: 62 NPSH 65
NPSH
Sbjct: 1099 NPSH 1102
>pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
Mutant
Length = 1150
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD---------KEASKVR 61
++ I+KGK L IK L T ++ +NG R +++ MNGQ R ++I+D K +
Sbjct: 1017 EIEIDKGKRLIIK-LETISEPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1075
Query: 62 NPSH 65
NPSH
Sbjct: 1076 NPSH 1079
>pdb|4HNV|A Chain A, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|B Chain B, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|C Chain C, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNV|D Chain D, Crystal Structure Of R54e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD---------KEASKVR 61
++ I+KGK L IK L T ++ +NG R +++ MNGQ R ++I+D K +
Sbjct: 1040 EIEIDKGKRLIIK-LETISEPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1098
Query: 62 NPSH 65
NPSH
Sbjct: 1099 NPSH 1102
>pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
Complex With Coenzyme A
Length = 1150
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD---------KEASKVR 61
++ I+KGK L IK L T ++ +NG R +++ MNGQ R ++I+D K +
Sbjct: 1017 EIEIDKGKRLIIK-LETISEPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1075
Query: 62 NPSH 65
NPSH
Sbjct: 1076 NPSH 1079
>pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
Mutant
Length = 1150
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD---------KEASKVR 61
++ I+KGK L IK L T ++ +NG R +++ MNGQ R ++I+D K +
Sbjct: 1017 EIEIDKGKRLIIK-LETISEPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1075
Query: 62 NPSH 65
NPSH
Sbjct: 1076 NPSH 1079
>pdb|4HNU|A Chain A, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|B Chain B, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|C Chain C, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
pdb|4HNU|D Chain D, Crystal Structure Of K442e Mutant Of S. Aureus Pyruvate
Carboxylase
Length = 1173
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD---------KEASKVR 61
++ I+KGK L IK L T ++ +NG R +++ MNGQ R ++I+D K +
Sbjct: 1040 EIEIDKGKRLIIK-LETISEPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1098
Query: 62 NPSH 65
NPSH
Sbjct: 1099 NPSH 1102
>pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
Carboxylase
Length = 1173
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD---------KEASKVR 61
++ I+KGK L IK L T ++ +NG R +++ MNGQ R ++I+D K +
Sbjct: 1040 EIEIDKGKRLIIK-LETISEPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKS 1098
Query: 62 NPSH 65
NPSH
Sbjct: 1099 NPSH 1102
>pdb|3TW7|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW7|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a
Crystallized Without Acetyl Coenzyme-A
pdb|3TW6|A Chain A, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|B Chain B, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|C Chain C, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
pdb|3TW6|D Chain D, Structure Of Rhizobium Etli Pyruvate Carboxylase T882a With
The Allosteric Activator, Acetyl Coenzyme-A
Length = 1165
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 14 IEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDK 55
IEKGKTL I A +A ++ G VFFE+NGQ R + + D+
Sbjct: 1037 IEKGKTLVIVNQAVSATDSQ-GMVTVFFELNGQPRRIKVPDR 1077
>pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
Carboxylase From Rhizobium Etli
Length = 1165
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 14 IEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDK 55
IEKGKTL I A +A ++ G VFFE+NGQ R + + D+
Sbjct: 1037 IEKGKTLVIVNQAVSATDSQ-GMVTVFFELNGQPRRIKVPDR 1077
>pdb|1YGG|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
From Actinobacillus Succinogenes
pdb|1YLH|A Chain A, Crystal Structure Of Phosphoenolpyruvate Carboxykinase
From Actinobaccilus Succinogenes In Complex With
Manganese And Pyruvate
Length = 560
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 21 GIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFN 74
G+ ++ +A++ K+G+ +FF ++G ++ D + + + H S VFN
Sbjct: 247 GVASMHCSANVGKDGDVAIFFGLSGTGKTTLSTDPKRQLIGDDEHGWDESGVFN 300
>pdb|1NQE|A Chain A, Outer Membrane Cobalamin Transporter (btub) From E. Coli
pdb|1NQG|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E.
Coli, With Bound Calcium
pdb|1NQH|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E.
Coli, With Bound Calcium And Cyanocobalamin (Vitamin
B12) Substrate
pdb|1UJW|A Chain A, Structure Of The Complex Between Btub And Colicin E3
Receptor Binding Domain
pdb|2GUF|A Chain A, In Meso Crystal Structure Of The Cobalamin Transporter,
Btub
pdb|2YSU|A Chain A, Structure Of The Complex Between Btub And Colicin E2
Receptor Binding Domain
Length = 594
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 6 TTLLTKVTIEKGKTLGIKALA---TAADLTKNGEREVFFEMNGQLRSVFIRDKEASKV 60
TT++T+ I++ ++ + + D+T+NG +GQL S+FIR AS V
Sbjct: 26 TTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGG-------SGQLSSIFIRGTNASHV 76
>pdb|1NQF|A Chain A, Outer Membrane Cobalamin Transporter (Btub) From E.
Coli, Methionine Substiution Construct For Se-Met Sad
Phasing
Length = 594
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 6 TTLLTKVTIEKGKTLGIKALA---TAADLTKNGEREVFFEMNGQLRSVFIRDKEASKV 60
TT++T+ I++ ++ + + D+T+NG +GQL S+FIR AS V
Sbjct: 26 TTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGG-------SGQLSSIFIRGTNASHV 76
>pdb|3M8B|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 In The Apo
State
pdb|3M8D|A Chain A, Crystal Structure Of Spin-Labeled Btub V10r1 With Bound
Calcium And Cyanocobalamin
Length = 594
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 6 TTLLTKVTIEKGKTLGIKALA---TAADLTKNGEREVFFEMNGQLRSVFIRDKEASKV 60
TT++T+ I++ ++ + + D+T+NG +GQL S+FIR AS V
Sbjct: 26 TTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGG-------SGQLSSIFIRGTNASHV 76
>pdb|3RGN|A Chain A, Crystal Structure Of Spin-Labeled Btub W371r1
Length = 594
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 6 TTLLTKVTIEKGKTLGIKALA---TAADLTKNGEREVFFEMNGQLRSVFIRDKEASKV 60
TT++T+ I++ ++ + + D+T+NG +GQL S+FIR AS V
Sbjct: 26 TTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGG-------SGQLSSIFIRGTNASHV 76
>pdb|3RGM|A Chain A, Crystal Structure Of Spin-Labeled Btub T156r1
Length = 594
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 6 TTLLTKVTIEKGKTLGIKALA---TAADLTKNGEREVFFEMNGQLRSVFIRDKEASKV 60
TT++T+ I++ ++ + + D+T+NG +GQL S+FIR AS V
Sbjct: 26 TTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGG-------SGQLSSIFIRGTNASHV 76
>pdb|2GSK|A Chain A, Structure Of The Btub:tonb Complex
Length = 590
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 10/58 (17%)
Query: 6 TTLLTKVTIEKGKTLGIKALA---TAADLTKNGEREVFFEMNGQLRSVFIRDKEASKV 60
TT++T+ I++ ++ + + D+T+NG +GQL S+FIR AS V
Sbjct: 22 TTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGG-------SGQLSSIFIRGTNASHV 72
>pdb|1UUR|A Chain A, Structure Of An Activated Dictyostelium Stat In Its
Dna-Unbound Form
pdb|1UUS|A Chain A, Structure Of An Activated Dictyostelium Stat In Its
Dna-Unbound Form
Length = 473
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 12 VTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISS 71
V I KGK LG L L G R F +NG +++ I D + NP+ L++ S
Sbjct: 139 VVISKGKQLGENQLVV---LVLTGARSNF-HINGPVKATMICDSHPTNKNNPTTPLEMDS 194
>pdb|1J3B|A Chain A, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1J3B|B Chain B, Crystal Structure Of Atp-dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|1XKV|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|A Chain A, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|B Chain B, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|C Chain C, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
pdb|2PC9|D Chain D, Crystal Structure Of Atp-Dependent Phosphoenolpyruvate
Carboxykinase From Thermus Thermophilus Hb8
Length = 529
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 21 GIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFN 74
G+ + +A++ K G+ VFF ++G ++ D E + + H VFN
Sbjct: 211 GVFPMHASANVGKEGDVAVFFGLSGTGKTTLSTDPERPLIGDDEHGWSEDGVFN 264
>pdb|1AYL|A Chain A, Phosphoenolpyruvate Carboxykinase
Length = 541
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 21 GIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFN 74
GI ++ +A++ + G+ VFF ++G ++ D + + + H VFN
Sbjct: 227 GIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFN 280
>pdb|2PY7|X Chain X, Crystal Structure Of E. Coli Phosphoenolpyruvate
Carboxykinase Mutant Lys213ser Complexed With
Atp-mg2+-mn2+
Length = 540
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 21 GIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFN 74
GI ++ +A++ + G+ VFF ++G ++ D + + + H VFN
Sbjct: 227 GIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFN 280
>pdb|1K3C|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp,
Alf3 And Pyruvate
pdb|1K3D|A Chain A, Phosphoenolpyruvate Carboxykinase In Complex With Adp And
Alf3
pdb|1OS1|A Chain A, Structure Of Phosphoenolpyruvate Carboxykinase Complexed
With Atp,Mg, Ca And Pyruvate.
pdb|2OLQ|A Chain A, How Does An Enzyme Recognize Co2?
pdb|2OLR|A Chain A, Crystal Structure Of Escherichia Coli Phosphoenolpyruvate
Carboxykinase Complexed With Carbon Dioxide, Mg2+, Atp
pdb|1AQ2|A Chain A, Phosphoenolpyruvate Carboxykinase
pdb|2PXZ|X Chain X, E. Coli Phosphoenolpyruvate Carboxykinase (Pepck)
Complexed With Atp, Mg2+, Mn2+, Carbon Dioxide And
Oxaloacetate
Length = 540
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 21 GIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFN 74
GI ++ +A++ + G+ VFF ++G ++ D + + + H VFN
Sbjct: 227 GIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDGVFN 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,804,802
Number of Sequences: 62578
Number of extensions: 50830
Number of successful extensions: 184
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 167
Number of HSP's gapped (non-prelim): 27
length of query: 77
length of database: 14,973,337
effective HSP length: 46
effective length of query: 31
effective length of database: 12,094,749
effective search space: 374937219
effective search space used: 374937219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)