BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3972
(77 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O17732|PYC1_CAEEL Pyruvate carboxylase 1 OS=Caenorhabditis elegans GN=pyc-1 PE=1 SV=1
Length = 1175
Score = 62.8 bits (151), Expect = 7e-10, Method: Composition-based stats.
Identities = 31/48 (64%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 12 VTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASK 59
V IE GKTL I+ LA L K GEREVFF++NGQ+RS+F+ DKEASK
Sbjct: 1046 VEIESGKTLAIQLLAEG-KLNKRGEREVFFDLNGQMRSIFVVDKEASK 1092
>sp|P11498|PYC_HUMAN Pyruvate carboxylase, mitochondrial OS=Homo sapiens GN=PC PE=1 SV=2
Length = 1178
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASK 59
+V +E+GKTL IKALA + DL + G+R+VFFE+NGQLRS+ ++D +A K
Sbjct: 1049 EVELERGKTLHIKALAVS-DLNRAGQRQVFFELNGQLRSILVKDTQAMK 1096
>sp|P52873|PYC_RAT Pyruvate carboxylase, mitochondrial OS=Rattus norvegicus GN=Pc PE=1
SV=2
Length = 1178
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASK 59
+V +E+GKTL IKALA + DL + G+R+VFFE+NGQLRS+ ++D +A K
Sbjct: 1049 EVELERGKTLHIKALAVS-DLNRAGQRQVFFELNGQLRSILVKDTQAMK 1096
>sp|Q05920|PYC_MOUSE Pyruvate carboxylase, mitochondrial OS=Mus musculus GN=Pc PE=1 SV=1
Length = 1178
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASK 59
+V +E+GKTL IKALA + DL + G+R+VFFE+NGQLRS+ ++D +A K
Sbjct: 1049 EVELERGKTLHIKALAVS-DLNRAGQRQVFFELNGQLRSILVKDTQAMK 1096
>sp|Q29RK2|PYC_BOVIN Pyruvate carboxylase, mitochondrial OS=Bos taurus GN=PC PE=2 SV=2
Length = 1178
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 40/49 (81%), Gaps = 1/49 (2%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASK 59
+V +E+GKTL IKALA + DL + G+R+VFFE+NGQLRS+ ++D +A K
Sbjct: 1049 EVELERGKTLHIKALAIS-DLNRAGQRQVFFELNGQLRSILVKDTQAMK 1096
>sp|P32327|PYC2_YEAST Pyruvate carboxylase 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PYC2 PE=1 SV=2
Length = 1180
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/45 (53%), Positives = 32/45 (71%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDK 55
+VTIE+GKTL IK A K G+REV+FE+NG+LR + + DK
Sbjct: 1040 EVTIEQGKTLIIKLQAVGDLNKKTGQREVYFELNGELRKIRVADK 1084
>sp|O93918|PYC_ASPTE Pyruvate carboxylase OS=Aspergillus terreus GN=pyc PE=2 SV=1
Length = 1193
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 12 VTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEAS 58
V +EKGK L +K LA + G+REVF+E+NG++R V I DK+AS
Sbjct: 1062 VELEKGKVLILKLLAIGPLSEQTGQREVFYEVNGEVRQVSIDDKKAS 1108
>sp|Q0CLK1|PYC_ASPTN Pyruvate carboxylase OS=Aspergillus terreus (strain NIH 2624 / FGSC
A1156) GN=pyc PE=3 SV=2
Length = 1193
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 12 VTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEAS 58
V +EKGK L +K LA + G+REVF+E+NG++R V I DK+AS
Sbjct: 1062 VELEKGKMLILKLLAIGPLSEQTGQREVFYEVNGEVRQVSIDDKKAS 1108
>sp|Q9HES8|PYC_ASPNG Pyruvate carboxylase OS=Aspergillus niger GN=pyc PE=3 SV=1
Length = 1192
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 12 VTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEAS 58
V +EKGK L +K LA + G+REVF+E+NG++R V + DK+AS
Sbjct: 1061 VELEKGKVLILKLLAIGPLSEQTGQREVFYEVNGEVRQVSVDDKKAS 1107
>sp|P78992|PYC_PICPA Pyruvate carboxylase OS=Komagataella pastoris GN=PYC1 PE=3 SV=1
Length = 1189
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 9 LTKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEAS 58
+T VTIE KTL IK +A +G REV+FE+NG++R V + DK +
Sbjct: 1042 VTIVTIETRKTLIIKCMAEGELSQSSGTREVYFELNGEMRKVTVEDKNGA 1091
>sp|Q8X1T3|PYC_PICAN Pyruvate carboxylase OS=Pichia angusta GN=PYC PE=3 SV=1
Length = 1175
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 12 VTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEAS 58
V IE+GKT IK +A + G REV+FE NG++R V + DK A+
Sbjct: 1045 VEIEQGKTFVIKVMAIGDLSPQTGTREVYFEFNGEMRKVTVEDKLAA 1091
>sp|P11154|PYC1_YEAST Pyruvate carboxylase 1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PYC1 PE=1 SV=2
Length = 1178
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 31/45 (68%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDK 55
+V IE+GKTL IK A K GEREV+F++NG++R + + D+
Sbjct: 1039 EVVIEQGKTLIIKLQAVGDLNKKTGEREVYFDLNGEMRKIRVADR 1083
>sp|Q9UUE1|PYC_SCHPO Pyruvate carboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=pyr1 PE=3 SV=1
Length = 1185
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 12 VTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEAS 58
V I++GKTL +K +A + G+REV+FE+NG+ R V + DK+A+
Sbjct: 1054 VEIDQGKTLIVKFVALGPLNPRTGQREVYFELNGENRHVTVEDKKAA 1100
>sp|Q9KWU4|PYC_BACSU Pyruvate carboxylase OS=Bacillus subtilis (strain 168) GN=pyc PE=3
SV=1
Length = 1148
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 10/64 (15%)
Query: 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKE-ASKVR-------- 61
+V IE+GKTL +K L + + + R V+FE+NGQ R V I+D+ S V+
Sbjct: 1017 EVEIERGKTLIVK-LISIGEPQPDATRVVYFELNGQPREVVIKDESIKSSVQERLKADRT 1075
Query: 62 NPSH 65
NPSH
Sbjct: 1076 NPSH 1079
>sp|Q6LLS2|PCKA_PHOPR Phosphoenolpyruvate carboxykinase [ATP] OS=Photobacterium profundum
GN=pckA PE=3 SV=1
Length = 530
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 21 GIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFN 74
GI ++ +A++ +NG+ VFF ++G ++ D + + + + H + VFN
Sbjct: 216 GIASMHCSANMGENGDVAVFFGLSGTGKTTLSTDPKRALIGDDEHGWDDNGVFN 269
>sp|A6VKV4|PCKA_ACTSZ Phosphoenolpyruvate carboxykinase [ATP] OS=Actinobacillus
succinogenes (strain ATCC 55618 / 130Z) GN=pckA PE=1
SV=1
Length = 538
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 21 GIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFN 74
G+ ++ +A++ K+G+ +FF ++G ++ D + + + H S VFN
Sbjct: 225 GVASMHCSANVGKDGDVAIFFGLSGTGKTTLSTDPKRQLIGDDEHGWDESGVFN 278
>sp|A9BAI8|ACSF_PROM4 Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
OS=Prochlorococcus marinus (strain MIT 9211) GN=acsF
PE=3 SV=1
Length = 349
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 34 NGEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISSV 72
N E F EM ++ + F ++ASK+ P HFLK S+
Sbjct: 293 NFEDGRFLEMRKEILNAFRSWRKASKLSKPIHFLKFVSL 331
>sp|P37782|RFBF_SHIFL dTDP-rhamnosyl transferase RfbF OS=Shigella flexneri GN=rfbF PE=3
SV=2
Length = 296
Score = 29.3 bits (64), Expect = 7.7, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 18/72 (25%)
Query: 14 IEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIR------DKEASKV------- 60
I K + +GI+ L K E+ +FF+ + ++R+ FI+ D E +K+
Sbjct: 65 IAKAQNIGIRY-----SLEKGAEKIIFFDQDSRIRNEFIKKLSCYMDNENAKIAGPVFID 119
Query: 61 RNPSHFLKISSV 72
R+ SH+ I ++
Sbjct: 120 RDKSHYYPICNI 131
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,867,541
Number of Sequences: 539616
Number of extensions: 673524
Number of successful extensions: 2418
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2395
Number of HSP's gapped (non-prelim): 20
length of query: 77
length of database: 191,569,459
effective HSP length: 48
effective length of query: 29
effective length of database: 165,667,891
effective search space: 4804368839
effective search space used: 4804368839
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)