Query psy3972
Match_columns 77
No_of_seqs 106 out of 431
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 22:02:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3972.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3972hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hbl_A Pyruvate carboxylase; T 99.1 9.5E-11 3.3E-15 99.5 8.1 54 6-60 1012-1065(1150)
2 2qf7_A Pyruvate carboxylase pr 98.9 2E-09 6.9E-14 91.5 7.7 51 7-58 1030-1080(1165)
3 3bg3_A Pyruvate carboxylase, m 98.8 5.8E-09 2E-13 85.8 6.5 52 6-58 584-635 (718)
4 3qug_A Iron-regulated surface 61.0 18 0.00062 24.1 5.0 55 17-76 63-117 (126)
5 1gu3_A Endoglucanase C; carboh 52.4 27 0.00094 22.8 4.8 52 11-66 51-102 (149)
6 2l7y_A Putative endo-beta-N-ac 51.8 44 0.0015 21.3 7.6 53 4-57 26-86 (98)
7 4e1r_A Protein LSR2; anti-para 50.7 4.6 0.00016 25.8 0.7 50 6-58 16-67 (86)
8 3cpf_A Eukaryotic translation 43.3 29 0.00098 22.8 3.8 36 40-76 17-54 (138)
9 2xsg_A Ccman5; hydrolase, mann 42.7 44 0.0015 28.1 5.5 37 8-48 695-731 (774)
10 3pe9_A Fibronectin(III)-like m 42.3 59 0.002 20.1 5.0 28 16-47 15-43 (98)
11 1iz6_A Initiation factor 5A; S 41.6 37 0.0013 22.2 4.1 37 40-76 17-54 (138)
12 2wvx_A Mannosidase, putative a 40.9 36 0.0012 28.2 4.8 37 8-48 658-694 (744)
13 1bkb_A Translation initiation 40.6 35 0.0012 22.2 3.8 37 40-76 19-56 (136)
14 3t6v_A Laccase; beta barrel, o 40.3 46 0.0016 25.6 5.0 39 10-54 189-227 (495)
15 3pxl_A Laccase; 4-copper prote 39.7 50 0.0017 25.5 5.1 39 10-54 186-224 (499)
16 3hrd_D Nicotinate dehydrogenas 36.7 35 0.0012 23.1 3.4 18 37-54 4-21 (160)
17 4ep8_B Urease subunit beta; al 36.6 28 0.00097 22.7 2.8 18 11-28 68-85 (101)
18 1x6o_A Eukaryotic initiation f 36.5 45 0.0015 23.0 4.1 37 40-77 41-79 (174)
19 1aoz_A Ascorbate oxidase; oxid 36.4 67 0.0023 24.7 5.4 38 11-54 205-242 (552)
20 1ueb_A EF-P, TT0860, elongatio 36.2 45 0.0016 22.9 4.0 38 40-77 12-49 (184)
21 2ww2_A Mannosidase, alpha-1,2- 36.1 37 0.0013 28.2 4.1 37 8-48 660-696 (737)
22 3er0_A Eukaryotic translation 35.4 64 0.0022 22.1 4.7 64 7-77 13-79 (167)
23 1rm6_C 4-hydroxybenzoyl-COA re 34.9 43 0.0015 22.3 3.6 18 37-54 3-20 (161)
24 1zpu_A Iron transport multicop 34.7 63 0.0021 25.0 5.0 34 11-50 179-212 (534)
25 3sqr_A Laccase; multicopper ox 34.5 60 0.002 25.8 4.9 40 9-54 252-291 (580)
26 2eif_A IF-5A, protein (eukaryo 34.5 67 0.0023 20.9 4.5 36 40-76 21-58 (136)
27 2cu1_A Mitogen-activated prote 33.1 82 0.0028 20.5 4.6 24 30-53 2-25 (103)
28 1gl4_A Nidogen-1, entactin; im 33.0 66 0.0023 23.9 4.7 38 8-47 136-174 (285)
29 4e1p_A Protein LSR2; anti-para 32.4 22 0.00076 21.0 1.7 22 37-58 21-42 (61)
30 1hfu_A Laccase 1; oxidoreducta 31.6 79 0.0027 24.0 5.0 37 10-52 185-221 (503)
31 1t3q_A Quinoline 2-oxidoreduct 31.4 55 0.0019 21.7 3.7 18 37-54 10-27 (168)
32 1v10_A Laccase; multicopper bl 31.3 79 0.0027 24.2 5.0 39 10-54 212-250 (521)
33 1ffv_A CUTS, iron-sulfur prote 31.0 47 0.0016 22.4 3.4 18 37-54 4-21 (163)
34 3cq9_A Uncharacterized protein 31.0 36 0.0012 23.8 2.9 26 2-27 189-214 (227)
35 2e12_A SM-like motif, hypothet 30.7 73 0.0025 20.7 4.1 36 8-49 29-69 (101)
36 3cwx_A Protein CAGD, HP0525, C 29.6 81 0.0028 21.8 4.4 43 7-53 92-134 (176)
37 4ubp_B Protein (urease (chain 29.4 42 0.0014 22.6 2.8 18 11-28 74-91 (126)
38 4ac7_B Urease subunit beta; hy 29.4 42 0.0014 22.6 2.8 18 11-28 74-91 (126)
39 3a5z_B EF-P, elongation factor 29.0 60 0.002 22.5 3.7 35 40-76 17-53 (191)
40 1n62_A Carbon monoxide dehydro 28.7 49 0.0017 22.4 3.1 17 38-54 5-21 (166)
41 2y5p_A Internalin B, INLB; pro 26.8 97 0.0033 17.9 4.1 20 36-55 4-23 (74)
42 1yby_A Translation elongation 25.9 75 0.0026 22.5 3.8 37 40-76 42-78 (215)
43 2yyo_A SPRY domain-containing 25.8 90 0.0031 20.4 4.0 20 35-54 119-138 (171)
44 1v8h_A Sulfur oxidation protei 25.8 1.1E+02 0.0037 19.1 4.2 31 15-47 14-58 (107)
45 2q9o_A Laccase-1; multicopper 25.4 1.2E+02 0.0041 23.5 5.1 39 10-54 215-253 (559)
46 3hks_A EIF-5A-2, eukaryotic tr 24.7 84 0.0029 21.5 3.8 36 40-76 39-76 (167)
47 2uur_A Collagen alpha-1(IX) ch 24.6 44 0.0015 23.5 2.4 21 33-53 113-133 (245)
48 3zqs_A E3 ubiquitin-protein li 24.5 60 0.0021 22.7 3.0 24 2-25 22-45 (186)
49 3tre_A EF-P, elongation factor 24.4 86 0.0029 21.7 3.8 35 40-76 17-53 (191)
50 3oyy_A EF-P, elongation factor 23.8 86 0.0029 21.7 3.7 37 40-76 15-51 (191)
51 3lm8_A Thiamine pyrophosphokin 22.7 64 0.0022 22.4 2.9 23 2-24 190-212 (222)
52 4bbk_A Kindlin-1, fermitin fam 21.8 1.4E+02 0.0046 20.9 4.4 38 4-46 75-114 (165)
53 3rtl_A Iron-regulated surface 21.5 1.8E+02 0.0061 19.0 4.7 49 27-76 67-115 (121)
54 2o1a_A Iron-regulated surface 21.2 1.9E+02 0.0064 19.2 8.0 63 11-76 71-133 (142)
55 1u07_A TONB protein; beta-hair 20.9 1.3E+02 0.0045 17.2 3.8 24 32-55 22-47 (90)
No 1
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=99.14 E-value=9.5e-11 Score=99.55 Aligned_cols=54 Identities=31% Similarity=0.580 Sum_probs=49.9
Q ss_pred eeeEEEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEeecCceec
Q psy3972 6 TTLLTKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKV 60 (77)
Q Consensus 6 ~~~ei~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D~sa~~~ 60 (77)
.++|+.+++++||+++|+|.++| +++++|+|+++|++|||+|.|.|+|.++...
T Consensus 1012 ~~~~~~~~~~~g~~~~i~l~~~~-~~~~~g~~~~~~e~nG~~~~v~v~~~~~~~~ 1065 (1150)
T 3hbl_A 1012 NGETVEIEIDKGKRLIIKLETIS-EPDENGNRTIYYAMNGQARRIYIKDENVHTN 1065 (1150)
T ss_dssp TTCEEEEEEETTEEEEEEEEEEC-CCCTTSEEEEEEEETTEEEEEEEECCCSSSC
T ss_pred CCceEEEEccCCcEEEEEecccC-CCCCCCceEEEEEECCeEEEEeccccccccc
Confidence 36799999999999999999999 9999999999999999999999999876543
No 2
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.92 E-value=2e-09 Score=91.51 Aligned_cols=51 Identities=37% Similarity=0.434 Sum_probs=48.4
Q ss_pred eeEEEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEeecCce
Q psy3972 7 TLLTKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEAS 58 (77)
Q Consensus 7 ~~ei~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D~sa~ 58 (77)
++|+.|++++||+++|+|.+++ +++++|+|+++|++|||+|.|.|.|.++.
T Consensus 1030 ~~~~~~~~~~gk~~~~~~~~~~-~~~~~g~~~~~~evnG~~~~v~v~~~~~~ 1080 (1165)
T 2qf7_A 1030 GEELFADIEKGKTLVIVNQAVS-ATDSQGMVTVFFELNGQPRRIKVPDRAHG 1080 (1165)
T ss_dssp TCEEEEEEETTEEEEEEEEEEC-CCCTTSEEEEEEEETTEEEEEEEECGGGT
T ss_pred CceeeecccCCccceeEecccC-CCccCCceEEEEEECCEEEEEEecCcccc
Confidence 7899999999999999999999 99999999999999999999999998643
No 3
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.81 E-value=5.8e-09 Score=85.79 Aligned_cols=52 Identities=52% Similarity=0.835 Sum_probs=48.5
Q ss_pred eeeEEEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEeecCce
Q psy3972 6 TTLLTKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEAS 58 (77)
Q Consensus 6 ~~~ei~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D~sa~ 58 (77)
.++|+.++|++||+++|+|.+++ +++++|+|+++|++||++|.|.|.|.+..
T Consensus 584 ~~~~~~v~i~~Gk~~~i~l~~i~-~~~~~g~~~~~vevnG~~~~v~v~~~~~~ 635 (718)
T 3bg3_A 584 IAEEFEVELERGKTLHIKALAVS-DLNRAGQRQVFFELNGQLRSILVKDTQAM 635 (718)
T ss_dssp BTCEEEEECTTSCEEEEEEEEEE-EECTTSEEEEEEESSSSEEEEEEECGGGT
T ss_pred cCceeeeecccCceeEEEecccC-CcccCCcEEEEEEECCEEEEEEEeccCcc
Confidence 37899999999999999999999 99999999999999999999999998643
No 4
>3qug_A Iron-regulated surface determinant protein H; gallium, metalloporphyrin, metal selectivity, NEAT domain, H binding, heme transport, heme; HET: GIX; 1.70A {Staphylococcus aureus} PDB: 3quh_A* 2z6f_A* 2e7d_A*
Probab=60.96 E-value=18 Score=24.10 Aligned_cols=55 Identities=13% Similarity=0.028 Sum_probs=36.6
Q ss_pred CCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEeecCceeccccceeeEEeeeeecC
Q psy3972 17 GKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFNGA 76 (77)
Q Consensus 17 GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D~sa~~~~~~~~~~~~~~~~~~~ 76 (77)
|+.+ +. |+ +-.+.+.|.|-|++.--...+..+-+=.-++..-.|...+.-+||++
T Consensus 63 G~~v--~v--vs-eDk~~nTR~V~F~v~dl~k~~nakv~I~Ip~i~Ydh~Y~Vq~~f~~~ 117 (126)
T 3qug_A 63 GKRV--TT--VS-KDPKNNSRTLIFPYIPDKAVYNAIVKVVVANIGYEGQYHVRIINQDI 117 (126)
T ss_dssp TEEC--EE--EE-EEGGGTEEEEEEECCTTCCEEEEEEEEEEGGGTEEEEEEEEEEETTC
T ss_pred CEEe--EE--Ee-ccccCCEEEEEEEeccCcceEEEEEEEEecCcCCceeEEEEEEeCCc
Confidence 7753 33 45 43455799999999776665555544223445567888888889876
No 5
>1gu3_A Endoglucanase C; carbohydrate-binding module, carbohydrate binding module, CBM, cellulose; HET: BGC; 2.3A {Cellulomonas fimi} SCOP: b.18.1.14 PDB: 1ulo_A 1ulp_A
Probab=52.44 E-value=27 Score=22.84 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=32.3
Q ss_pred EEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEeecCceecccccee
Q psy3972 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSHF 66 (77)
Q Consensus 11 ~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D~sa~~~~~~~~~ 66 (77)
-|.|++|++..++..|-+ .. +..-.|....||.++.--. +........+.||
T Consensus 51 gi~L~~G~tY~lsF~A~a-s~--~r~i~v~i~~~~~~y~~y~-~~~~~lt~~~q~y 102 (149)
T 1gu3_A 51 GVAIEEGTTYTLRYTATA-ST--DVTVRALVGQNGAPYGTVL-DTSPALTSEPRQV 102 (149)
T ss_dssp EECBCTTCEEEEEEEEEE-SS--CEECEEEEEESSTTCCEEE-EECCEECSSCEEE
T ss_pred CEEEcCCCEEEEEEEEEe-CC--CcEEEEEEecCCCChhhhe-eeeeEcCCCceEE
Confidence 377999999999999997 44 3344555667887652222 2223444444444
No 6
>2l7y_A Putative endo-beta-N-acetylglucosaminidase; putative surface protein, structural protein; NMR {Streptococcus pneumoniae}
Probab=51.79 E-value=44 Score=21.31 Aligned_cols=53 Identities=13% Similarity=0.132 Sum_probs=40.6
Q ss_pred eeeeeEEEEEeCCCCEEEEEEe----eeccCCCC--CceEEEEEEECCee--eEEEEeecCc
Q psy3972 4 ELTTLLTKVTIEKGKTLGIKAL----ATAADLTK--NGEREVFFEMNGQL--RSVFIRDKEA 57 (77)
Q Consensus 4 ~~~~~ei~Veie~GKtLiIkL~----aIg~e~de--~G~R~V~FELNGq~--R~V~V~D~sa 57 (77)
.|+|..+.+..++|.+-.+.|. .|+ ..|. .|..+|.....|+. ..|.|+++.+
T Consensus 26 DltGl~v~~~YsDgt~~~~~lt~~~v~Vs-GfDs~~~G~QtlTVtY~G~t~~f~V~V~~~~~ 86 (98)
T 2l7y_A 26 DLSEGRFAVAYSNDTMEEHSFTDEGVEIS-GYDAQKTGRQTLTLHYQGHEVSFDVLVSPKAA 86 (98)
T ss_dssp CCCSCEEEEEETTSCEEEEESCCTTSEEE-SCCTTSCSSEEEEEEETTEEEEEEEEEECCCS
T ss_pred ccCCCEEEEEEcCCCEEEEecccCCcEEE-ccCCCCCCcEEEEEEECCEEEEEEEEEEeccc
Confidence 5889999999999999988665 344 4444 49999999999998 4555555544
No 7
>4e1r_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 2.04A {Mycobacterium tuberculosis}
Probab=50.74 E-value=4.6 Score=25.80 Aligned_cols=50 Identities=18% Similarity=0.183 Sum_probs=25.2
Q ss_pred eeeEEEEEeCCCCEEEEEEeeeccCCCC--CceEEEEEEECCeeeEEEEeecCce
Q psy3972 6 TTLLTKVTIEKGKTLGIKALATAADLTK--NGEREVFFEMNGQLRSVFIRDKEAS 58 (77)
Q Consensus 6 ~~~ei~Veie~GKtLiIkL~aIg~e~de--~G~R~V~FELNGq~R~V~V~D~sa~ 58 (77)
|++.+.++..=-|..++.| +. +.|. ....+|.|.|||....|-..+.++.
T Consensus 16 ~~~~~~~~~~MAqkv~V~L--vD-DLDG~~~adETV~FsLDGv~YEIDLS~~NA~ 67 (86)
T 4e1r_A 16 TTENLYFQGAMAKKVTVTL--VD-DFDGSGAADETVEFGLDGVTYEIDLSTKNAT 67 (86)
T ss_dssp -------------CCCCCC--BC-TTTCCSBCCEEEEEEETTEEEEEEECHHHHH
T ss_pred cccceeccccceeEEEEEE--EE-cCCCCCcCCcEEEEEECCEEEEEECCHHHHH
Confidence 3444445444445555555 33 3332 2335999999999999988776654
No 8
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=43.30 E-value=29 Score=22.76 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=20.1
Q ss_pred EEEECCeeeEEEEeecCceec--cccceeeEEeeeeecC
Q psy3972 40 FFEMNGQLRSVFIRDKEASKV--RNPSHFLKISSVFNGA 76 (77)
Q Consensus 40 ~FELNGq~R~V~V~D~sa~~~--~~~~~~~~~~~~~~~~ 76 (77)
++++||+|+.|.=-..+.... .++. -+|+-.+|+|.
T Consensus 17 ~i~~~g~p~~Vve~~~~KpGKgG~A~v-r~k~knl~TG~ 54 (138)
T 3cpf_A 17 FVVLKGRPCKIVEMSTSKTGKHGHAKV-HLVGIDIFTGK 54 (138)
T ss_dssp EEEETTEEEEEEEEEEECC----CCEE-EEEEEETTTCC
T ss_pred EEEECCEEEEEEEEEeccCCCCccEEE-EEEEEECCCCC
Confidence 568899988775443332222 1222 25667777775
No 9
>2xsg_A Ccman5; hydrolase, mannosidase; HET: B3P; 2.00A {Cellulosimicrobium cellulans}
Probab=42.68 E-value=44 Score=28.06 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=26.5
Q ss_pred eEEEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeee
Q psy3972 8 LLTKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLR 48 (77)
Q Consensus 8 ~ei~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R 48 (77)
.++.|.++.||++.|+-...+ + +..=.=-..|||++.
T Consensus 695 ~~vti~l~~Gk~~~I~a~~~s-~---~n~YIqs~~lNGk~~ 731 (774)
T 2xsg_A 695 DSTTITYDDGSAFTVTADGVS-E---DAFYVQSATLDGATF 731 (774)
T ss_dssp SEEEEECTTSCEEEEEEETCC-S---SCCEEEEEEETTEEC
T ss_pred CeEEEECCCCCEEEEEecCCC-C---CCceEEEEEECCEEC
Confidence 478999999999999877666 3 222233457899884
No 10
>3pe9_A Fibronectin(III)-like module; CBHA, beta-sandwich, cellulosome, unknown function; 1.69A {Clostridium thermocellum}
Probab=42.32 E-value=59 Score=20.06 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=19.3
Q ss_pred CCCEEEEEEeeeccCCCCCc-eEEEEEEECCee
Q psy3972 16 KGKTLGIKALATAADLTKNG-EREVFFEMNGQL 47 (77)
Q Consensus 16 ~GKtLiIkL~aIg~e~de~G-~R~V~FELNGq~ 47 (77)
.|.++.|...|- |.+| -+.|-|.+||+.
T Consensus 15 ~g~~v~i~a~A~----D~dg~V~kVef~vdg~~ 43 (98)
T 3pe9_A 15 GNEFLKITATAS----DSDGKISRVDFLVDGEV 43 (98)
T ss_dssp TTSEEEEEEEEC----CSSSCEEEEEEEETTEE
T ss_pred CCCEEEEEEEEE----eCCCCEEEEEEEECCEE
Confidence 455555555442 3455 999999999986
No 11
>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5
Probab=41.61 E-value=37 Score=22.24 Aligned_cols=37 Identities=5% Similarity=0.162 Sum_probs=20.8
Q ss_pred EEEECCeeeEEEEeecCceec-cccceeeEEeeeeecC
Q psy3972 40 FFEMNGQLRSVFIRDKEASKV-RNPSHFLKISSVFNGA 76 (77)
Q Consensus 40 ~FELNGq~R~V~V~D~sa~~~-~~~~~~~~~~~~~~~~ 76 (77)
++++||+|+.|.=...+.... -..---+|+-.+|+|.
T Consensus 17 ~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~ 54 (138)
T 1iz6_A 17 YIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGK 54 (138)
T ss_dssp EEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCC
T ss_pred EEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCC
Confidence 468899988776554433222 1111335666677665
No 12
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A {Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A* 2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Probab=40.92 E-value=36 Score=28.23 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=25.7
Q ss_pred eEEEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeee
Q psy3972 8 LLTKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLR 48 (77)
Q Consensus 8 ~ei~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R 48 (77)
.+++|.++.||++.|+-..-+ + +..=.=-..|||++.
T Consensus 658 ~~v~i~l~~Gk~~~I~a~~~s-~---~n~YIqs~~lNGk~~ 694 (744)
T 2wvx_A 658 KKATLHFENGNSLVIDAPNNS-T---ENFYIDSMSFNGADH 694 (744)
T ss_dssp SEEEEECTTSCEEEEECTTCC-S---SCCEEEEEEETTEEC
T ss_pred CeEEEECCCCCEEEEEecCCC-C---CCceEEEEEECCEEC
Confidence 478999999999998765555 2 222233457899983
No 13
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=40.59 E-value=35 Score=22.20 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=20.1
Q ss_pred EEEECCeeeEEEEeecCceecc-ccceeeEEeeeeecC
Q psy3972 40 FFEMNGQLRSVFIRDKEASKVR-NPSHFLKISSVFNGA 76 (77)
Q Consensus 40 ~FELNGq~R~V~V~D~sa~~~~-~~~~~~~~~~~~~~~ 76 (77)
++++||+|+.|.=-..+..... ..---+|+-.+|+|.
T Consensus 19 ~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~ 56 (136)
T 1bkb_A 19 YVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGG 56 (136)
T ss_dssp EEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCC
T ss_pred EEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCC
Confidence 5688999887754433222221 111135666677665
No 14
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=40.26 E-value=46 Score=25.58 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=26.8
Q ss_pred EEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEee
Q psy3972 10 TKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD 54 (77)
Q Consensus 10 i~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D 54 (77)
-.+++++||++.++|+..+ . .+...|.++|....|.-.|
T Consensus 189 ~~~~v~~G~~~RlRliN~~-~-----~~~~~~~i~gh~~~via~D 227 (495)
T 3t6v_A 189 SVITVEVGKRYRMRLVSIS-C-----DPNYDFSIDGHDMTIIETD 227 (495)
T ss_dssp CEEEECTTCEEEEEEEECC-S-----SCCEEEEETTCCEEEEEET
T ss_pred eEEEEcCCCEEEEEEEecC-C-----CeeEEEEECCCeEEEEEeC
Confidence 3578899999999998876 2 2455666666655544444
No 15
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=39.66 E-value=50 Score=25.49 Aligned_cols=39 Identities=15% Similarity=0.314 Sum_probs=26.5
Q ss_pred EEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEee
Q psy3972 10 TKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD 54 (77)
Q Consensus 10 i~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D 54 (77)
-.+++++||++.++|+..+ . .+...|.++|....|.-.|
T Consensus 186 ~~~~v~~G~~~RlRliNa~-~-----~~~~~~~i~gh~~~via~D 224 (499)
T 3pxl_A 186 SVIKVTKGKRYRFRLVSLS-C-----NPNHTFSIDGHNLTIIEVD 224 (499)
T ss_dssp CEEEECTTCEEEEEEEECC-S-----SCCEEEEETTBCEEEEEET
T ss_pred ceEEEcCCCEEEEEEEecC-C-----CeeEEEEECCCeEEEEEEC
Confidence 3578899999999998887 2 2445666666655444443
No 16
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=36.73 E-value=35 Score=23.12 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=14.8
Q ss_pred EEEEEEECCeeeEEEEee
Q psy3972 37 REVFFEMNGQLRSVFIRD 54 (77)
Q Consensus 37 R~V~FELNGq~R~V~V~D 54 (77)
..+.|.|||+.+.+.+..
T Consensus 4 ~~i~~~vNG~~~~v~v~p 21 (160)
T 3hrd_D 4 ITINLNLNGEARSIVTEP 21 (160)
T ss_dssp EEEEEEETTEEEEEEECS
T ss_pred ceEEEEECCEEEEEecCC
Confidence 368999999999987653
No 17
>4ep8_B Urease subunit beta; alpha-beta barrel, nickel metalloenzyme, hydrolase, radiatio; HET: KCX; 1.55A {Enterobacter aerogenes} PDB: 1a5l_B 1a5k_B 1a5n_B 1a5o_B 1ef2_B* 1ejr_B* 1ejs_B* 1ejt_B* 1eju_B* 1ejv_B* 1a5m_B* 1ejw_B* 1ejx_B* 4epb_B* 4epd_B* 4epe_B* 1fwa_B* 1fwb_B* 1fwc_B* 1fwd_B* ...
Probab=36.61 E-value=28 Score=22.67 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=16.1
Q ss_pred EEEeCCCCEEEEEEeeec
Q psy3972 11 KVTIEKGKTLGIKALATA 28 (77)
Q Consensus 11 ~Veie~GKtLiIkL~aIg 28 (77)
.|.+|||.+--|.|..++
T Consensus 68 avRFEPG~~r~V~LV~~~ 85 (101)
T 4ep8_B 68 AVRFEPGQKREVELVAFA 85 (101)
T ss_dssp EEEECTTCEEEEEEEECC
T ss_pred eEeeCCCCeEEEEEEEcc
Confidence 578899999999999997
No 18
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=36.50 E-value=45 Score=22.99 Aligned_cols=37 Identities=14% Similarity=0.224 Sum_probs=21.2
Q ss_pred EEEECCeeeEEEEeecCceec--cccceeeEEeeeeecCC
Q psy3972 40 FFEMNGQLRSVFIRDKEASKV--RNPSHFLKISSVFNGAK 77 (77)
Q Consensus 40 ~FELNGq~R~V~V~D~sa~~~--~~~~~~~~~~~~~~~~~ 77 (77)
++++||+|+.|.=...+.... .++ --+|+-.+|+|.+
T Consensus 41 ~I~idG~p~~Vve~~~~KpGKgG~A~-vr~k~kni~TG~k 79 (174)
T 1x6o_A 41 YVCINGRPCKVIDLSVSKTGKHGHAK-VSIVATDIFTGNR 79 (174)
T ss_dssp EEEETTEEEEEEEEEECCC----CCE-EEEEEEETTTCCE
T ss_pred EEEECCEEEEEEEEEecCCCCCCceE-EEEEEEECCCCCE
Confidence 568999998875444432222 222 2366777777753
No 19
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=36.44 E-value=67 Score=24.69 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=27.0
Q ss_pred EEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEee
Q psy3972 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD 54 (77)
Q Consensus 11 ~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D 54 (77)
.+++++||++-++|+..+ . .+...|.+.|....|.-.|
T Consensus 205 ~~~v~~G~~~RlRliNa~-~-----~~~~~~~i~gh~~~vi~~D 242 (552)
T 1aoz_A 205 IFHVSPKKTYRIRIASTT-A-----LAALNFAIGNHQLLVVEAD 242 (552)
T ss_dssp CEEECTTCEEEEEEEECC-S-----SCEEEEEETTCCEEEEEET
T ss_pred EEEEcCCCEEEEEEEccc-c-----cceEEEEEcCcEEEEEEEC
Confidence 578899999999998877 2 3466677777665554444
No 20
>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V
Probab=36.19 E-value=45 Score=22.94 Aligned_cols=38 Identities=16% Similarity=0.136 Sum_probs=21.1
Q ss_pred EEEECCeeeEEEEeecCceeccccceeeEEeeeeecCC
Q psy3972 40 FFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFNGAK 77 (77)
Q Consensus 40 ~FELNGq~R~V~V~D~sa~~~~~~~~~~~~~~~~~~~~ 77 (77)
++++||+++.|.=-..+....-..---+|+-.+|+|.+
T Consensus 12 ~i~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~TG~~ 49 (184)
T 1ueb_A 12 KVKMDGGLWECVEYQHQKLGRGGAKVVAKFKNLETGAT 49 (184)
T ss_dssp EEEETTEEEEEEEEEEEEETTSCCEEEEEEEESSSSCE
T ss_pred EEEECCEEEEEEEEEEeeCCCCceEEEEEEEECCCCCE
Confidence 56889998877655443322211112245667777753
No 21
>2ww2_A Mannosidase, alpha-1,2-mannosidase; hydrolase, glycoside hydrolase family 92, BT2199; HET: SWA; 1.90A {Bacteroides thetaiotaomicron} PDB: 2wvy_A*
Probab=36.06 E-value=37 Score=28.17 Aligned_cols=37 Identities=19% Similarity=0.112 Sum_probs=25.7
Q ss_pred eEEEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeee
Q psy3972 8 LLTKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLR 48 (77)
Q Consensus 8 ~ei~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R 48 (77)
.+++|.++.||++.|+-..-+ ++..=.=-..|||++.
T Consensus 660 ~~v~i~l~~Gk~~~I~a~~~s----~~n~YIqs~~lNGk~~ 696 (737)
T 2ww2_A 660 KKVTLHLPEGKNFVVSAADNA----ADRPYIRKALLNGQEF 696 (737)
T ss_dssp SEEEEECGGGCEEEEECTTCC----TTCCEEEEEEETTEEC
T ss_pred CeEEEECCCCCEEEEEecCCC----CCCceEEEEEECCeEC
Confidence 478999999999998765555 2222233457899883
No 22
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=35.44 E-value=64 Score=22.09 Aligned_cols=64 Identities=11% Similarity=0.149 Sum_probs=28.1
Q ss_pred eeEEEEEe-CCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEeecCceec--cccceeeEEeeeeecCC
Q psy3972 7 TLLTKVTI-EKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKV--RNPSHFLKISSVFNGAK 77 (77)
Q Consensus 7 ~~ei~Vei-e~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D~sa~~~--~~~~~~~~~~~~~~~~~ 77 (77)
.+|.+++- +.|-+..+-+.+ + +. ..|+ ++++||+|+.|.=...+.... .++. -+|.-.+|+|.+
T Consensus 13 ~~~~~~~~~~~~as~t~pi~a-~-dl-rkG~---~I~idG~p~~Vve~~~~KpGKHG~A~v-r~k~knl~TG~k 79 (167)
T 3er0_A 13 DEEHTFETADAGSSATYPMQC-S-AL-RKNG---FVVIKSRPCKIVDMSTSKTGKHGHAKV-HLVAIDIFTGKK 79 (167)
T ss_dssp ---------CCCCCCCEEEET-T-TC-CTTC---EEEETTEEEEEEEEEEECCSSSSCCEE-EEEEEESSSCCC
T ss_pred cccccccccCCCCcceEEEEH-H-Hc-cCCC---EEEECCEEEEEEEEEEeCCCCcCceEE-EEEEEEcCCCCE
Confidence 44555552 444444443322 2 23 2355 567899998764433322211 1221 356677887764
No 23
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=34.90 E-value=43 Score=22.30 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=14.7
Q ss_pred EEEEEEECCeeeEEEEee
Q psy3972 37 REVFFEMNGQLRSVFIRD 54 (77)
Q Consensus 37 R~V~FELNGq~R~V~V~D 54 (77)
..+.|.+||+...+.+..
T Consensus 3 ~~i~~~vNG~~~~v~~~~ 20 (161)
T 1rm6_C 3 NILRLTLNGRAREDLVPD 20 (161)
T ss_dssp EEEEEEETTEEEEEEEET
T ss_pred ceEEEEECCEEEEEecCC
Confidence 368899999999997653
No 24
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=34.73 E-value=63 Score=24.95 Aligned_cols=34 Identities=9% Similarity=0.124 Sum_probs=23.3
Q ss_pred EEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEE
Q psy3972 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSV 50 (77)
Q Consensus 11 ~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V 50 (77)
.+++++||++-++|+..| . .|...|.++|....|
T Consensus 179 ~~~v~~g~~~RlRliNa~-~-----~~~~~~~i~gh~~~v 212 (534)
T 1zpu_A 179 TWEVQPDTTYLLRIVNVG-G-----FVSQYFWIEDHEMTV 212 (534)
T ss_dssp EEECCSSCEEEEEEEECC-S-----SCCEEEEETTBCEEE
T ss_pred EEEEECCCEEEEEEEecc-C-----CceEEEEEcCCeeEE
Confidence 578899999999998887 2 234555555554433
No 25
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=34.53 E-value=60 Score=25.80 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=27.3
Q ss_pred EEEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEee
Q psy3972 9 LTKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD 54 (77)
Q Consensus 9 ei~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D 54 (77)
.-.+.+++||++.++|+..+ . .+...|.++|....|.-.|
T Consensus 252 ~~~~~v~~G~~yRlRlINa~-~-----~~~~~~~i~gh~~~VIa~D 291 (580)
T 3sqr_A 252 KFELTFVEGTKYRLRLINVG-I-----DSHFEFAIDNHTLTVIAND 291 (580)
T ss_dssp CCEEECCTTCEEEEEEEECC-S-----SCCEEEEETTCCEEEEEET
T ss_pred ceeEEEcCCCEEEEEEEecc-C-----CceeeEEeCCceEEEEEeC
Confidence 35788899999999998887 2 2355666666655544444
No 26
>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A
Probab=34.45 E-value=67 Score=20.89 Aligned_cols=36 Identities=6% Similarity=0.004 Sum_probs=18.7
Q ss_pred EEEECCeeeEEEEeecCceec--cccceeeEEeeeeecC
Q psy3972 40 FFEMNGQLRSVFIRDKEASKV--RNPSHFLKISSVFNGA 76 (77)
Q Consensus 40 ~FELNGq~R~V~V~D~sa~~~--~~~~~~~~~~~~~~~~ 76 (77)
++++||+|+.|.=-..+.... .++ --+|+-.+++|.
T Consensus 21 ~I~~~g~p~~V~e~~~~KpGKhG~A~-vr~k~knl~tG~ 58 (136)
T 2eif_A 21 YVMIDGVPCEIVDISVSKPGKHGGAK-ARVVGIGIFEKV 58 (136)
T ss_dssp EEEETTEEEEEEEEEECCCCSSSCCE-EEEEEEESSSCC
T ss_pred EEEECCEEEEEEEEEeecCCCCCceE-EEEEEEEcCCCC
Confidence 468899988754333222111 111 125666677765
No 27
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=33.09 E-value=82 Score=20.54 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=19.5
Q ss_pred CCCCCceEEEEEEECCeeeEEEEe
Q psy3972 30 DLTKNGEREVFFEMNGQLRSVFIR 53 (77)
Q Consensus 30 e~de~G~R~V~FELNGq~R~V~V~ 53 (77)
.|.......|-||..|+.|-+.+.
T Consensus 2 ~~~~~~dvRiKfE~~GEkRIi~f~ 25 (103)
T 2cu1_A 2 SSGSSGDVRVKFEHRGEKRILQFP 25 (103)
T ss_dssp CSSSSCEEEEEEEETTEEEEEEEE
T ss_pred CCcccCcEEEEEEecCeEEEEecc
Confidence 344556778999999999999987
No 28
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=33.01 E-value=66 Score=23.86 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=32.0
Q ss_pred eEEEEEeCCC-CEEEEEEeeeccCCCCCceEEEEEEECCee
Q psy3972 8 LLTKVTIEKG-KTLGIKALATAADLTKNGEREVFFEMNGQL 47 (77)
Q Consensus 8 ~ei~Veie~G-KtLiIkL~aIg~e~de~G~R~V~FELNGq~ 47 (77)
-+.+|++.+| ..|.|+..+-| .|+.|+=.+--+++|+.
T Consensus 136 r~s~v~F~~g~e~l~i~q~~~G--lD~~g~L~~~~~i~G~v 174 (285)
T 1gl4_A 136 RQAEVTFLGHPGKLVLKQQFSG--IDEHGHLTISTELEGRV 174 (285)
T ss_dssp EEEEEEETTSSSCEEEEEEEEC--BCTTSCEECEEEEEEEE
T ss_pred EEEEEEEcCCCeEEEEEEEEEc--cCcCCcEEEEEEEeeec
Confidence 5778999988 79999998887 78889888888899943
No 29
>4e1p_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 1.73A {Mycobacterium tuberculosis}
Probab=32.44 E-value=22 Score=21.03 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=18.7
Q ss_pred EEEEEEECCeeeEEEEeecCce
Q psy3972 37 REVFFEMNGQLRSVFIRDKEAS 58 (77)
Q Consensus 37 R~V~FELNGq~R~V~V~D~sa~ 58 (77)
-+|.|.|||....|-..+.++.
T Consensus 21 eTV~F~ldG~~YeIDLs~~nA~ 42 (61)
T 4e1p_A 21 ETVEFGLDGVTYEIDLSTKNAT 42 (61)
T ss_dssp EEEEEEETTEEEEEEECHHHHH
T ss_pred cEEEEEECCEEEEEECCHHHHH
Confidence 5999999999999988776654
No 30
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=31.60 E-value=79 Score=24.03 Aligned_cols=37 Identities=16% Similarity=0.362 Sum_probs=24.8
Q ss_pred EEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEE
Q psy3972 10 TKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFI 52 (77)
Q Consensus 10 i~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V 52 (77)
-.+++++||++-++|+..| . .|...|.++|....|.-
T Consensus 185 ~~~~v~~g~~~RlRliN~~-~-----~~~~~~~i~gh~~~vi~ 221 (503)
T 1hfu_A 185 SIVNVEQGKKYRMRLISLS-C-----DPNWQFSIDGHELTIIE 221 (503)
T ss_dssp CEEEECTTCEEEEEEEECC-S-----SCCEEEEETTCCEEEEE
T ss_pred eEEEEcCCCEEEEEEEecC-C-----cccEEEEEcCceEEEEe
Confidence 3578899999999998887 2 23455555555544433
No 31
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=31.38 E-value=55 Score=21.72 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=14.9
Q ss_pred EEEEEEECCeeeEEEEee
Q psy3972 37 REVFFEMNGQLRSVFIRD 54 (77)
Q Consensus 37 R~V~FELNGq~R~V~V~D 54 (77)
..+.|.|||+.+.+.+..
T Consensus 10 m~i~~~ing~~~~~~v~~ 27 (168)
T 1t3q_A 10 MRISATINGKPRVFYVEP 27 (168)
T ss_dssp EEEEEEETTEEEEEEECT
T ss_pred ceEEEEECCEEEEEecCC
Confidence 368999999999987753
No 32
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=31.28 E-value=79 Score=24.18 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=26.2
Q ss_pred EEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEee
Q psy3972 10 TKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD 54 (77)
Q Consensus 10 i~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D 54 (77)
-.+++++||++-++|+..| . .|...|.++|....|.-.|
T Consensus 212 ~~~~v~~G~~~RlRliNa~-~-----~~~~~~~i~gh~~~vi~~D 250 (521)
T 1v10_A 212 AVVSVQSGKRYRFRIVSTS-C-----FPNYAFSIDGHRMTVIEVD 250 (521)
T ss_dssp CEEEECTTCEEEEEEEECC-S-----SCCEEEEETTCCEEEEEET
T ss_pred eEEEECCCCEEEEEEEecC-C-----cccEEEEECCCeEEEEecC
Confidence 3678899999999998887 2 2345566666555444343
No 33
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=30.99 E-value=47 Score=22.38 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=14.8
Q ss_pred EEEEEEECCeeeEEEEee
Q psy3972 37 REVFFEMNGQLRSVFIRD 54 (77)
Q Consensus 37 R~V~FELNGq~R~V~V~D 54 (77)
..+.|.|||+.+.+.+..
T Consensus 4 ~~i~~~vNG~~~~~~v~~ 21 (163)
T 1ffv_A 4 KIITVNVNGKAQEKAVEP 21 (163)
T ss_dssp EEEEEEETTEEEEEEECT
T ss_pred ceEEEEECCEEEEEecCC
Confidence 368899999999987653
No 34
>3cq9_A Uncharacterized protein LP_1622; Q88WK7_lacpl, transferase, thiamine pyrophosphokinase, NESG, LPR114, structural genomics, PSI-2; 2.20A {Lactobacillus plantarum WCFS1}
Probab=30.97 E-value=36 Score=23.80 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=14.9
Q ss_pred cceeeeeEEEEEeCCCCEEEEEEeee
Q psy3972 2 STELTTLLTKVTIEKGKTLGIKALAT 27 (77)
Q Consensus 2 ~~~~~~~ei~Veie~GKtLiIkL~aI 27 (77)
|.|+++.+++|+++.|.-++|.....
T Consensus 189 SNe~~~~~~~I~~~~G~llvi~s~d~ 214 (227)
T 3cq9_A 189 SNEFSGNTGHFSFDAGVLAVIQSRDD 214 (227)
T ss_dssp EECBSSSEEEEEECSSCEEEEEECC-
T ss_pred ceeEECCeEEEEEcCCEEEEEEECCC
Confidence 34555566666666666666665444
No 35
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=30.73 E-value=73 Score=20.67 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=23.3
Q ss_pred eEEEEEeCCCCEEEEEEeeeccCC-----CCCceEEEEEEECCeeeE
Q psy3972 8 LLTKVTIEKGKTLGIKALATAADL-----TKNGEREVFFEMNGQLRS 49 (77)
Q Consensus 8 ~ei~Veie~GKtLiIkL~aIg~e~-----de~G~R~V~FELNGq~R~ 49 (77)
+++.+++.+|..+.=.+ ++- +. |++|.--. |||.|.
T Consensus 29 ~~v~i~l~DGs~l~GTv-avr-PTiQ~y~d~~~~eG~----NGqlRl 69 (101)
T 2e12_A 29 ERVRIELDDGSMIAGTV-AVR-PTIQTYRDEQEREGS----NGQLRI 69 (101)
T ss_dssp CEEEEEETTSCEEEEEE-SSC-CCEEEEECTTCCEEE----EEEEEE
T ss_pred eEEEEEEcCCCeEeeee-ccC-chHHHhhCcccccCc----cceEEe
Confidence 57899999998765443 332 32 45554433 999885
No 36
>3cwx_A Protein CAGD, HP0525, CAG24; CAG-pathogenicity island, type IV secretion system, T4SS, unknown function; 2.30A {Helicobacter pylori} PDB: 3cwy_A
Probab=29.63 E-value=81 Score=21.80 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=31.3
Q ss_pred eeEEEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEe
Q psy3972 7 TLLTKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIR 53 (77)
Q Consensus 7 ~~ei~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~ 53 (77)
|+.+++.|.|--.-.....+|+ .. ....+|..|-|+.|.|.--
T Consensus 92 glnveiqinpevkdfftfksis-tt---nkqrcflslrgetreilcd 134 (176)
T 3cwx_A 92 GLNVEIQINPEVKDFFTFKSIS-TT---NKQRCFLSLRGETREILCD 134 (176)
T ss_dssp EEEEEEESSTTSTTSEEEEEEE-ES---SCEEEEEEETTEEEEECCS
T ss_pred CceEEEEECcchhcceEeeeec-cc---ccceeEEEeccccceeeec
Confidence 5566777777666667777787 43 3458999999999998643
No 37
>4ubp_B Protein (urease (chain B)); bacillus pasteurii, nickel, acetohydroxamic acid, metalloenzyme, hydrolase; HET: KCX; 1.55A {Sporosarcina pasteurii} SCOP: b.85.3.1 PDB: 1s3t_B* 3ubp_B* 1ie7_B* 1ubp_B* 2ubp_B*
Probab=29.43 E-value=42 Score=22.61 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=16.4
Q ss_pred EEEeCCCCEEEEEEeeec
Q psy3972 11 KVTIEKGKTLGIKALATA 28 (77)
Q Consensus 11 ~Veie~GKtLiIkL~aIg 28 (77)
.|.+|||.+--|.|+.++
T Consensus 74 avRFEPG~~k~V~LV~~~ 91 (126)
T 4ubp_B 74 AARFEPGEEMEVELTELG 91 (126)
T ss_dssp EEEECTTCEEEEEEEECC
T ss_pred eEeeCCCCeEEEEEEEcc
Confidence 578899999999999997
No 38
>4ac7_B Urease subunit beta; hydrolase, bacillus pasteurii; HET: CXM KCX FLC; 1.50A {Sporosarcina pasteurii} PDB: 1s3t_B* 3ubp_B* 1ie7_B* 4ubp_B* 1ubp_B* 2ubp_B*
Probab=29.43 E-value=42 Score=22.61 Aligned_cols=18 Identities=11% Similarity=0.265 Sum_probs=16.4
Q ss_pred EEEeCCCCEEEEEEeeec
Q psy3972 11 KVTIEKGKTLGIKALATA 28 (77)
Q Consensus 11 ~Veie~GKtLiIkL~aIg 28 (77)
.|.+|||.+--|.|+.++
T Consensus 74 avRFEPG~~k~V~LV~~~ 91 (126)
T 4ac7_B 74 AARFEPGEEMEVELTELG 91 (126)
T ss_dssp EEEECTTCEEEEEEEECC
T ss_pred eEeeCCCCeEEEEEEEcc
Confidence 578899999999999997
No 39
>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}
Probab=29.02 E-value=60 Score=22.53 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=20.1
Q ss_pred EEEECCeeeEEEEeecCceecccccee--eEEeeeeecC
Q psy3972 40 FFEMNGQLRSVFIRDKEASKVRNPSHF--LKISSVFNGA 76 (77)
Q Consensus 40 ~FELNGq~R~V~V~D~sa~~~~~~~~~--~~~~~~~~~~ 76 (77)
++++||+++.|.=-..+.... -+-| .|+-.+++|.
T Consensus 17 ~I~~dg~p~~Vve~~~~KpGK--G~A~vr~klknl~TG~ 53 (191)
T 3a5z_B 17 KIMLDGEPYAVEASEFVKPGK--GQAFARVKLRRLLTGT 53 (191)
T ss_dssp EEEETTEEEEEEEEEEECCTT--CCCEEEEEEEEGGGTE
T ss_pred EEEECCEEEEEEEEEEEcCCC--CcEEEEEEEEECCCCC
Confidence 568899988776554432222 2333 4556666664
No 40
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=28.74 E-value=49 Score=22.38 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=14.3
Q ss_pred EEEEEECCeeeEEEEee
Q psy3972 38 EVFFEMNGQLRSVFIRD 54 (77)
Q Consensus 38 ~V~FELNGq~R~V~V~D 54 (77)
.+.|.|||+.+.+.+..
T Consensus 5 ~i~~~vNG~~~~~~v~~ 21 (166)
T 1n62_A 5 HIELTINGHPVEALVEP 21 (166)
T ss_dssp EEEEEETTEEEEEEECT
T ss_pred eEEEEECCEEEEEecCC
Confidence 68899999999987653
No 41
>2y5p_A Internalin B, INLB; protein binding, virulence factor, pathogenicity factor, BET fold; 1.30A {Listeria monocytogenes}
Probab=26.83 E-value=97 Score=17.88 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=15.8
Q ss_pred eEEEEEEECCeeeEEEEeec
Q psy3972 36 EREVFFEMNGQLRSVFIRDK 55 (77)
Q Consensus 36 ~R~V~FELNGq~R~V~V~D~ 55 (77)
.-+|.|+.||-.....|...
T Consensus 4 ~ytVtFd~nGg~~~~~v~~g 23 (74)
T 2y5p_A 4 VYTVSYDVDGTVIKTKVEAG 23 (74)
T ss_dssp EEEEEEEETTEEEEEEEETT
T ss_pred EEEEEEECCCCEeeEEEcCC
Confidence 35899999999887777654
No 42
>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}
Probab=25.89 E-value=75 Score=22.53 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=20.1
Q ss_pred EEEECCeeeEEEEeecCceeccccceeeEEeeeeecC
Q psy3972 40 FFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFNGA 76 (77)
Q Consensus 40 ~FELNGq~R~V~V~D~sa~~~~~~~~~~~~~~~~~~~ 76 (77)
++++||+++.|.=...+....-..---+|+-.+++|.
T Consensus 42 ~I~idG~p~~Vve~~hvKPGKG~A~vr~klknl~TG~ 78 (215)
T 1yby_A 42 TFELDGQIFQVIEFQHVKPGKGAAFVRTKLKNIVTGA 78 (215)
T ss_dssp EEEETTEEEEEEEEEEECCC--CCEEEEEEEETTTCC
T ss_pred EEEECCEEEEEEEEEEEcCCCCceEEEEEEEECCCCC
Confidence 5788999987765544222221111224566667665
No 43
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=25.82 E-value=90 Score=20.44 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=15.9
Q ss_pred ceEEEEEEECCeeeEEEEee
Q psy3972 35 GEREVFFEMNGQLRSVFIRD 54 (77)
Q Consensus 35 G~R~V~FELNGq~R~V~V~D 54 (77)
...+|+|.+||+..-+.-.+
T Consensus 119 ~~~~i~Ft~NG~~lg~af~~ 138 (171)
T 2yyo_A 119 QTAQIFFTKNGKRVGSTIMP 138 (171)
T ss_dssp SCEEEEEEETTEEEEEEEES
T ss_pred CcEEEEEEECCEEcCceecC
Confidence 35799999999998766554
No 44
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=25.82 E-value=1.1e+02 Score=19.14 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=22.3
Q ss_pred CCCCEEEEEEeeeccCCCCCceE--------------EEEEEECCee
Q psy3972 15 EKGKTLGIKALATAADLTKNGER--------------EVFFEMNGQL 47 (77)
Q Consensus 15 e~GKtLiIkL~aIg~e~de~G~R--------------~V~FELNGq~ 47 (77)
..|...-|+++ |+ .|.+.|+| ++-+..||++
T Consensus 14 ~~g~~~~vk~~-I~-HPmetGl~~D~~g~~iPa~~I~~v~~~~ng~~ 58 (107)
T 1v8h_A 14 KAGEEFRLQVV-AQ-HPNEPGTRRDAEGKLIPAKYINLVEVYFEGEK 58 (107)
T ss_dssp CTTCEEEEEEE-EC-CCCBCSCCBCTTSCBCCCBCEEEEEEEETTEE
T ss_pred cCCCcEEEEEE-eE-CCCCccccccccCCcCchHheEEEEEEECCEE
Confidence 46777778885 77 88888865 3566678764
No 45
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=25.39 E-value=1.2e+02 Score=23.46 Aligned_cols=39 Identities=23% Similarity=0.331 Sum_probs=26.3
Q ss_pred EEEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEee
Q psy3972 10 TKVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRD 54 (77)
Q Consensus 10 i~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D 54 (77)
-.+.+.+||++-++|+..| . .+...|.+.|....|.-.|
T Consensus 215 ~~~~v~~g~~~RlRliNa~-~-----~~~~~~~i~gh~~~vi~~D 253 (559)
T 2q9o_A 215 ANVTLTPGKRHRLRILNTS-T-----ENHFQVSLVNHTMTVIAAD 253 (559)
T ss_dssp CEEEECTTCEEEEEEEECC-S-----SCCEEEEETTBCEEEEEET
T ss_pred eEEEEcCCCEEEEEEEecC-C-----CceEEEEECCCceEEEecC
Confidence 3578899999999998887 2 2345566666655444443
No 46
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=24.70 E-value=84 Score=21.51 Aligned_cols=36 Identities=6% Similarity=0.061 Sum_probs=19.6
Q ss_pred EEEECCeeeEEEEeecCceec--cccceeeEEeeeeecC
Q psy3972 40 FFEMNGQLRSVFIRDKEASKV--RNPSHFLKISSVFNGA 76 (77)
Q Consensus 40 ~FELNGq~R~V~V~D~sa~~~--~~~~~~~~~~~~~~~~ 76 (77)
++++||+|+.|.=...+.... .++. -+|.-.+|+|.
T Consensus 39 ~I~idG~P~~Vve~~~~KpGKhG~A~v-r~k~knl~TGk 76 (167)
T 3hks_A 39 HIVIKNRPCKVVEVSTSKTGKHGHAKC-HFVAIDIFTAK 76 (167)
T ss_dssp EEEETTEEEEEEEEEEECSSTTCCCEE-EEEEEETTTCC
T ss_pred EEEECCEEEEEEEEEEeCCCCCCceEE-EEEEEEcCCCC
Confidence 567899998874433322211 1222 34566677664
No 47
>2uur_A Collagen alpha-1(IX) chain; glycoprotein, hydroxylation, structural protein, NC4, collagen IX, polymorphism, extracellular matrix; 1.8A {Homo sapiens}
Probab=24.58 E-value=44 Score=23.48 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=12.9
Q ss_pred CCceEEEEEEECCeeeEEEEe
Q psy3972 33 KNGEREVFFEMNGQLRSVFIR 53 (77)
Q Consensus 33 e~G~R~V~FELNGq~R~V~V~ 53 (77)
++|.+.+=.++||..+.+...
T Consensus 113 ~~~~~qlgv~l~g~~~~l~~~ 133 (245)
T 2uur_A 113 SSGKEQVGIKINGQTQSVVFS 133 (245)
T ss_dssp TTSCEEEEEEEEGGGTEEEEE
T ss_pred CCCcEEEEEEEcCCCCEEEEE
Confidence 446667777777665555553
No 48
>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}
Probab=24.48 E-value=60 Score=22.70 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=20.5
Q ss_pred cceeeeeEEEEEeCCCCEEEEEEe
Q psy3972 2 STELTTLLTKVTIEKGKTLGIKAL 25 (77)
Q Consensus 2 ~~~~~~~ei~Veie~GKtLiIkL~ 25 (77)
++.|++.++.+..+.|+.++|.+.
T Consensus 22 d~~~~~i~l~~~D~~gR~H~l~v~ 45 (186)
T 3zqs_A 22 DTCFSTIKLKAEDASGREHLITLK 45 (186)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEE
T ss_pred cCCccEEEEEEEeCCCCeEEEEEE
Confidence 567888999999999999998875
No 49
>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}
Probab=24.37 E-value=86 Score=21.67 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=18.8
Q ss_pred EEEECCeeeEEEEeecCceecccccee--eEEeeeeecC
Q psy3972 40 FFEMNGQLRSVFIRDKEASKVRNPSHF--LKISSVFNGA 76 (77)
Q Consensus 40 ~FELNGq~R~V~V~D~sa~~~~~~~~~--~~~~~~~~~~ 76 (77)
++++||+++.|.=...+.... -+-| +|+-.+++|.
T Consensus 17 ~I~~dG~p~~Vve~~~~KpGK--G~A~vr~klknl~tG~ 53 (191)
T 3tre_A 17 KVMVDGDPCSIIDNEFVKPGK--GQAFNRVKFRNLKTGR 53 (191)
T ss_dssp EEEETTEEEEEEEEEEECCSS--SCCEEEEEEEETTTCC
T ss_pred EEEECCEEEEEEEEEEeeCCC--CceEEEEEEEECCCCC
Confidence 467899998765443322221 2222 4555666664
No 50
>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}
Probab=23.82 E-value=86 Score=21.72 Aligned_cols=37 Identities=16% Similarity=0.186 Sum_probs=18.4
Q ss_pred EEEECCeeeEEEEeecCceeccccceeeEEeeeeecC
Q psy3972 40 FFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFNGA 76 (77)
Q Consensus 40 ~FELNGq~R~V~V~D~sa~~~~~~~~~~~~~~~~~~~ 76 (77)
++++||+++.|.=...+....-..---+|+-.+++|.
T Consensus 15 ~I~~dg~p~~Vve~~~~KpGKG~A~vr~klknl~tG~ 51 (191)
T 3oyy_A 15 VANINGAPWVIQKAEFNKSGRNAAVVKMKLKNLLTGA 51 (191)
T ss_dssp EEEETTEEEEEEEEEEECCTTSCCEEEEEEEETTTCC
T ss_pred EEEECCEEEEEEEEEeeeCCCCcEEEEEEEEECCCCC
Confidence 4578999877654433222221111114555666664
No 51
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=22.75 E-value=64 Score=22.39 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.1
Q ss_pred cceeeeeEEEEEeCCCCEEEEEE
Q psy3972 2 STELTTLLTKVTIEKGKTLGIKA 24 (77)
Q Consensus 2 ~~~~~~~ei~Veie~GKtLiIkL 24 (77)
|.|+++.+++|++++|.-++|.-
T Consensus 190 SNe~~~~~~~I~~~~G~llvi~s 212 (222)
T 3lm8_A 190 SNELIHSRGTFSFVKGILIMIRS 212 (222)
T ss_dssp SBCBSSSEEEEEESBSCEEEEEE
T ss_pred eeEEECCeEEEEEccCEEEEEEe
Confidence 67888999999999999988864
No 52
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=21.78 E-value=1.4e+02 Score=20.90 Aligned_cols=38 Identities=24% Similarity=0.275 Sum_probs=25.9
Q ss_pred eeeeeEEE--EEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCe
Q psy3972 4 ELTTLLTK--VTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQ 46 (77)
Q Consensus 4 ~~~~~ei~--Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq 46 (77)
.|.|-||. |.+..+|-. |||. |. .++||.++++..+-+
T Consensus 75 nLrGCEVtPDVnva~~Kf~-ikL~-ip---~~~gm~e~~LrcdsE 114 (165)
T 4bbk_A 75 NLRGCEIVPDVNVSGRKFG-IKLL-IP---VADGMNEVYLRCDHE 114 (165)
T ss_dssp ECTTCEEEEEEETTTTEEE-EEEE-EE---ETTEEEEEEEEESSH
T ss_pred ecCccEEecccccccceee-EEEe-cC---CCCcceeeeeecCCH
Confidence 46788888 556666654 7773 32 256999999987743
No 53
>3rtl_A Iron-regulated surface determinant protein B; heme protein, NEAT domain, heme uptake, heme binding, cell W metal transport; HET: HEM; 1.45A {Staphylococcus aureus subsp} PDB: 3rur_A*
Probab=21.50 E-value=1.8e+02 Score=19.01 Aligned_cols=49 Identities=16% Similarity=-0.006 Sum_probs=33.4
Q ss_pred eccCCCCCceEEEEEEECCeeeEEEEeecCceeccccceeeEEeeeeecC
Q psy3972 27 TAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFNGA 76 (77)
Q Consensus 27 Ig~e~de~G~R~V~FELNGq~R~V~V~D~sa~~~~~~~~~~~~~~~~~~~ 76 (77)
++ +-.+...|+|-|+++--...+..+-+=.-++..-.|...+--+||.+
T Consensus 67 is-eD~~~nTR~v~F~v~dl~k~ina~v~I~Ip~i~Ydh~Y~vq~~f~~~ 115 (121)
T 3rtl_A 67 IS-KDAKNNTRTIIFPYVEGKTLYDAIVKVHVKTIDYDGQYHVRIVDKEA 115 (121)
T ss_dssp EE-EETTTTEEEEEEECCTTCCEEEEEEEEEEGGGTEEEEEEEEEEECC-
T ss_pred EE-cccCCCEEEEEEEeccCcceEEEEEEEEecccCCcceEEEEEEeccc
Confidence 45 33344599999999877766665544334456677888888888764
No 54
>2o1a_A Iron-regulated surface determinant protein A; surface protein staphylococcus aureus, structural genomics, PSI-2; 1.60A {Staphylococcus aureus} SCOP: b.1.28.1
Probab=21.22 E-value=1.9e+02 Score=19.15 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=39.1
Q ss_pred EEEeCCCCEEEEEEeeeccCCCCCceEEEEEEECCeeeEEEEeecCceeccccceeeEEeeeeecC
Q psy3972 11 KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFNGA 76 (77)
Q Consensus 11 ~Veie~GKtLiIkL~aIg~e~de~G~R~V~FELNGq~R~V~V~D~sa~~~~~~~~~~~~~~~~~~~ 76 (77)
.|+-..|+.+=++.++-. ...+.|+|.|+++--...+..+-.=.-++..-.|...|.-+|+.+
T Consensus 71 kv~~~nG~~~~~~vvS~D---~~~ntr~v~F~V~~l~~~i~~kv~V~Ip~inYdh~Y~v~~~fd~~ 133 (142)
T 2o1a_A 71 KFYNANNQELATTVVNDN---KKADTRTINVAVEPGYKSLTTKVHIVVPQINYNHRYTTHLEFEKA 133 (142)
T ss_dssp EEECTTCCEECEEEEEEE---TTTTEEEEEEEECTTCCEEEEEEEEEEGGGTEEEEEEEEEEESSC
T ss_pred EEeccCCcEEeeEEEecc---CCCCEEEEEEEecCCCceEEEEEEEEecccccccceeEEEEecCc
Confidence 333346777555553332 346899999999866666655544223345567777777777653
No 55
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=20.93 E-value=1.3e+02 Score=17.24 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=19.2
Q ss_pred CCCceEEEEEEEC--CeeeEEEEeec
Q psy3972 32 TKNGEREVFFEMN--GQLRSVFIRDK 55 (77)
Q Consensus 32 de~G~R~V~FELN--Gq~R~V~V~D~ 55 (77)
..+|...|.|.+| |+...+.|...
T Consensus 22 ~~~G~V~v~~~i~~~G~v~~~~v~~s 47 (90)
T 1u07_A 22 RIEGQVKVKFDVTPDGRVDNVQILSA 47 (90)
T ss_dssp TCCEEEEEEEEECTTSCEEEEEEEEE
T ss_pred CCceEEEEEEEECCCCCEEEEEEEec
Confidence 3568999999986 88888888744
Done!