RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3972
         (77 letters)



>gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase.  This enzyme plays a
            role in gluconeogensis but not glycolysis [Energy
            metabolism, Glycolysis/gluconeogenesis].
          Length = 1143

 Score = 67.5 bits (165), Expect = 4e-15
 Identities = 24/48 (50%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 12   VTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASK 59
            V IEKGKTL IK  A        GEREVFFE+NGQ R + + D+    
Sbjct: 1015 VDIEKGKTLIIKLQAVG-ATDSQGEREVFFELNGQPRRIKVPDRSHKA 1061


>gnl|CDD|223968 COG1038, PycA, Pyruvate carboxylase [Energy production and
            conversion].
          Length = 1149

 Score = 57.7 bits (140), Expect = 1e-11
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 10/63 (15%)

Query: 12   VTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKE---ASKVR------N 62
            V IEKGKTL IK  A   +  + G R V+FE+NGQ R + ++D+    +   R      N
Sbjct: 1020 VEIEKGKTLIIKLQAIG-EPDEKGMRTVYFELNGQPREIKVKDRSVGSSVVARRKADPGN 1078

Query: 63   PSH 65
            P H
Sbjct: 1079 PGH 1081


>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
          Length = 1146

 Score = 57.1 bits (139), Expect = 2e-11
 Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 12/64 (18%)

Query: 12   VTIEKGKTLGIKALA-TAADLTKNGEREVFFEMNGQLRSVFIRDKEA---SKVR------ 61
            V IE GKTL IK  A    D  ++G R V+FE+NGQ R V +RD+        R      
Sbjct: 1017 VEIEPGKTLIIKLEAIGEPD--EDGMRTVYFELNGQPREVQVRDRSVKSTVAAREKADPG 1074

Query: 62   NPSH 65
            NP H
Sbjct: 1075 NPGH 1078


>gnl|CDD|240072 cd04721, BAH_plant_1, BAH, or Bromo Adjacent Homology domain,
           plant-specific sub-family with unknown function. BAH
           domains are found in a variety of proteins playing roles
           in transcriptional silencing and the remodeling of
           chromatin. It is assumed that in most or all of these
           instances the BAH domain mediates protein-protein
           interactions.
          Length = 130

 Score = 28.9 bits (65), Expect = 0.12
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 35  GEREVFFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFN 74
             RE+F   N Q+ SV   D  A+ V    H+ K  SV  
Sbjct: 62  NPREIFLSPNLQVISVECIDGLAT-VLTREHYEKFQSVPK 100


>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular
          activities (AAA).  AAA family proteins often perform
          chaperone-like functions that assist in the assembly,
          operation, or disassembly of protein complexes.
          Length = 131

 Score = 26.4 bits (59), Expect = 1.0
 Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 9/47 (19%)

Query: 17 GKTLGIKALATAADLTKNGEREVFFEMNG-QLRSVFIRDKEASKVRN 62
          GKT   KA+A             F E++G +L S ++ + E  ++R 
Sbjct: 10 GKTTLAKAVAKELGAP-------FIEISGSELVSKYVGESE-KRLRE 48


>gnl|CDD|233572 TIGR01779, TonB-B12, TonB-dependent vitamin B12 receptor.  This
          model represents the TonB-dependent outer membrane
          receptor found in gamma proteobacteria responsible for
          translocating the cobalt-containing vitamin B12
          (cobalamin) [Transport and binding proteins, Other,
          Transport and binding proteins, Porins].
          Length = 614

 Score = 26.4 bits (58), Expect = 1.8
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 10/57 (17%)

Query: 7  TLLTKVTIEKGKTLGIKAL---ATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKV 60
          T++T+  IE+ +   +  L        + +NG R       GQ  S+F+R  E+  V
Sbjct: 50 TIITRQDIERTQAKSLPELLRRLPGVSIAQNGGR-------GQNTSLFLRGTESDHV 99


>gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain.
           LOX is a member of the family of FMN-containing
           alpha-hydroxyacid oxidases and catalyzes the oxidation
           of l-lactate using molecular oxygen to generate pyruvate
           and H2O2.  This family occurs in both prokaryotes and
           eukaryotes. Members of this family include
           flavocytochrome b2 (FCB2), glycolate oxidase (GOX),
           lactate monooxygenase (LMO), mandelate dehydrogenase
           (MDH), and long chain hydroxyacid oxidase (LCHAO).
          Length = 351

 Score = 26.3 bits (58), Expect = 1.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 14  IEKGKTLGIKALATAADLTKNGEREVFFEMNGQ 46
           +++ K  G KA+   AD T  G RE       Q
Sbjct: 144 LDRAKAAGAKAIILTADATVGGNREADIRNKFQ 176


>gnl|CDD|132595 TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase,
           8-HDF type.  This model describes a narrow clade of
           cyanobacterial deoxyribodipyrimidine photo-lyase. This
           group, in contrast to several closely related proteins,
           uses a chromophore that, in other lineages is modified
           further to become coenzyme F420. This chromophore is
           called 8-HDF in most articles on the DNA photolyase and
           FO in most literature on coenzyme F420 [DNA metabolism,
           DNA replication, recombination, and repair].
          Length = 471

 Score = 26.0 bits (57), Expect = 2.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 9   LTKVTIEKGKTLGIKALATAADL 31
           LT+  +E    LG+ AL TA DL
Sbjct: 172 LTEAELEAAAPLGVIALPTAKDL 194


>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
          Length = 557

 Score = 25.8 bits (57), Expect = 2.4
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 5/50 (10%)

Query: 4   ELTTLLTKVTIEKGKTLGIKALATAADLTKNGEREVF-----FEMNGQLR 48
            L T LT + +E G+  G+ A  +         R V      FE N Q+R
Sbjct: 226 LLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMR 275


>gnl|CDD|236730 PRK10641, btuB, vitamin B12/cobalamin outer membrane transporter;
          Provisional.
          Length = 614

 Score = 25.3 bits (56), Expect = 4.0
 Identities = 9/16 (56%), Positives = 11/16 (68%)

Query: 45 GQLRSVFIRDKEASKV 60
          GQL S+FIR   +S V
Sbjct: 81 GQLSSLFIRGTNSSHV 96


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.315    0.129    0.339 

Gapped
Lambda     K      H
   0.267   0.0779    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,607,184
Number of extensions: 274472
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 287
Number of HSP's successfully gapped: 15
Length of query: 77
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 31
Effective length of database: 8,897,318
Effective search space: 275816858
Effective search space used: 275816858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)