RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy3972
         (77 letters)



>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A
            {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A*
            3hb9_A*
          Length = 1150

 Score = 66.9 bits (164), Expect = 4e-15
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 10/63 (15%)

Query: 12   VTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVR---------N 62
            + I+KGK L IK    + +  +NG R +++ MNGQ R ++I+D+               N
Sbjct: 1018 IEIDKGKRLIIKLETIS-EPDENGNRTIYYAMNGQARRIYIKDENVHTNANVKPKADKSN 1076

Query: 63   PSH 65
            PSH
Sbjct: 1077 PSH 1079


>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional,
            biotin-dependent, ligase; HET: KCX COA AGS; 2.00A
            {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
          Length = 1165

 Score = 65.0 bits (159), Expect = 2e-14
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 12   VTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASKVRNPSH 65
              IEKGKTL I   A +      G   VFFE+NGQ R + + D+          
Sbjct: 1035 ADIEKGKTLVIVNQAVS-ATDSQGMVTVFFELNGQPRRIKVPDRAHGATGAAVR 1087


>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding,
           biotin, disease mutation, gluconeogenesis, ligase, lipid
           synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens}
           PDB: 3bg9_A
          Length = 718

 Score = 60.8 bits (148), Expect = 6e-13
 Identities = 28/49 (57%), Positives = 40/49 (81%), Gaps = 1/49 (2%)

Query: 11  KVTIEKGKTLGIKALATAADLTKNGEREVFFEMNGQLRSVFIRDKEASK 59
           +V +E+GKTL IKALA + DL + G+R+VFFE+NGQLRS+ ++D +A K
Sbjct: 589 EVELERGKTLHIKALAVS-DLNRAGQRQVFFELNGQLRSILVKDTQAMK 636


>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine,
           transfera; HET: KCX; 1.90A {Propionibacterium
           freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5
           PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*
          Length = 539

 Score = 35.3 bits (82), Expect = 7e-04
 Identities = 4/26 (15%), Positives = 9/26 (34%)

Query: 34  NGEREVFFEMNGQLRSVFIRDKEASK 59
            G       + G +R V ++    + 
Sbjct: 495 AGPVTYNVNVGGTVREVTVQQATRAS 520


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.050
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 25/88 (28%)

Query: 9   LTKVTIEK-----------GKTLGIKALATAAD---LTKNGEREVFFEMNGQLRSVFIR- 53
           LT+  ++            GK + I +L   A    ++  G  +  + +N  LR      
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEI-SLVNGAKNLVVS--GPPQSLYGLNLTLRKAKAPS 400

Query: 54  DKEASKV----RNP--SH-FLKISSVFN 74
             + S++    R    S+ FL ++S F+
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFH 428


>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
           {Saccharomyces cerevisiae}
          Length = 956

 Score = 25.4 bits (54), Expect = 2.2
 Identities = 7/35 (20%), Positives = 14/35 (40%)

Query: 40  FFEMNGQLRSVFIRDKEASKVRNPSHFLKISSVFN 74
           F ++   LR  F+ +        P+H +    +F 
Sbjct: 457 FLDLMEVLRERFLSNLPWIYKFFPNHDIFQDPIFG 491


>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
           CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
           1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
          Length = 806

 Score = 24.8 bits (54), Expect = 3.1
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 20/55 (36%)

Query: 17  GKTLGIKALATAADLTKNGEREVFFEMNG-------------QLRSVFIRDKEAS 58
           GKTL  KA+A             F  + G              +R +F + ++A+
Sbjct: 523 GKTLLAKAIANECQAN-------FISIKGPELLTMWFGESEANVREIFDKARQAA 570


>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
          variant of the BAB rossmann fold, oxidoreductase; 1.98A
          {Acidaminococcus fermentans}
          Length = 331

 Score = 23.7 bits (52), Expect = 8.4
 Identities = 6/23 (26%), Positives = 10/23 (43%)

Query: 6  TTLLTKVTIEKGKTLGIKALATA 28
               K  ++  K LG+K + T 
Sbjct: 54 NCFANKQNLDIYKKLGVKYILTR 76


>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG
          structure initiative, PSI, joint center for structural
          GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga
          maritima} SCOP: c.2.1.2
          Length = 267

 Score = 23.6 bits (52), Expect = 8.9
 Identities = 5/34 (14%), Positives = 15/34 (44%)

Query: 9  LTKVTIEKGKTLGIKALATAADLTKNGEREVFFE 42
           ++   +  +  G++ +A   D++   E +   E
Sbjct: 58 ASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLE 91


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.315    0.129    0.339 

Gapped
Lambda     K      H
   0.267   0.0403    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,062,042
Number of extensions: 52229
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 12
Length of query: 77
Length of database: 6,701,793
Length adjustment: 46
Effective length of query: 31
Effective length of database: 5,417,427
Effective search space: 167940237
Effective search space used: 167940237
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)