RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3972
         (77 letters)



>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
          {Myxococcus xanthus [TaxId: 34]}
          Length = 347

 Score = 25.1 bits (53), Expect = 1.0
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 4/36 (11%)

Query: 21 GIKALATAADLTKNGEREVFFEMN----GQLRSVFI 52
          GI  LA A  L   G   V  E +    G + +  +
Sbjct: 9  GISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHAL 44


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.129    0.339 

Gapped
Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 246,034
Number of extensions: 8872
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.8 bits)