Query psy3973
Match_columns 285
No_of_seqs 207 out of 1641
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 22:03:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3973.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3973hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2349|consensus 100.0 5.2E-30 1.1E-34 255.9 6.5 212 11-234 344-566 (585)
2 PRK10484 putative transporter; 99.7 7E-17 1.5E-21 161.5 17.0 141 14-216 342-483 (523)
3 TIGR03648 Na_symport_lg probab 99.7 7.3E-16 1.6E-20 155.1 14.0 158 13-216 380-537 (552)
4 PRK15419 proline:sodium sympor 99.6 5E-14 1.1E-18 140.3 14.6 101 16-123 340-443 (502)
5 TIGR02121 Na_Pro_sym sodium/pr 99.5 1.3E-13 2.9E-18 136.7 15.1 102 14-121 333-434 (487)
6 PRK12488 acetate permease; Pro 99.5 1.7E-13 3.6E-18 138.2 14.6 103 19-125 374-476 (549)
7 PRK09395 actP acetate permease 99.5 1.9E-13 4.1E-18 137.8 14.5 102 18-125 375-478 (551)
8 COG4147 DhlC Predicted symport 99.5 1.2E-13 2.5E-18 135.3 9.3 146 24-220 368-514 (529)
9 PRK09442 panF sodium/panthothe 99.4 2.6E-12 5.6E-17 127.3 15.0 105 16-125 334-440 (483)
10 TIGR02711 symport_actP cation/ 99.4 1.4E-12 2.9E-17 131.6 12.4 99 21-125 376-476 (549)
11 COG0591 PutP Na+/proline sympo 99.4 8.2E-12 1.8E-16 124.6 15.0 143 14-216 340-485 (493)
12 TIGR02119 panF sodium/pantothe 99.4 1.3E-11 2.8E-16 121.8 14.8 105 14-124 333-437 (471)
13 PF00474 SSF: Sodium:solute sy 99.3 2.4E-12 5.3E-17 124.0 8.3 97 16-117 307-406 (406)
14 TIGR00813 sss transporter, SSS 99.2 3.9E-11 8.4E-16 116.1 9.1 96 16-117 309-407 (407)
15 COG4146 Predicted symporter [G 98.9 3.6E-09 7.9E-14 101.6 8.8 139 14-214 343-482 (571)
16 KOG2348|consensus 98.6 5.9E-09 1.3E-13 102.1 -0.4 106 16-125 366-473 (667)
17 COG4145 PanF Na+/panthothenate 98.2 3.2E-06 6.8E-11 81.6 8.1 101 16-122 332-434 (473)
18 KOG3761|consensus 98.1 4.8E-07 1E-11 86.2 0.0 98 16-120 356-455 (591)
19 PF12670 DUF3792: Protein of u 76.0 18 0.00039 29.3 7.8 36 90-125 46-82 (116)
20 TIGR02358 thia_cytX probable h 67.7 73 0.0016 30.9 11.3 65 56-122 284-354 (386)
21 PRK11017 codB cytosine permeas 63.9 72 0.0016 31.1 10.5 64 56-122 294-370 (404)
22 PLN02776 prenyltransferase 62.0 85 0.0018 30.5 10.4 29 102-130 119-149 (341)
23 PRK12895 ubiA prenyltransferas 61.9 56 0.0012 30.8 8.9 97 23-129 51-154 (286)
24 COG3302 DmsC DMSO reductase an 55.0 1.2E+02 0.0026 28.7 9.7 48 85-132 86-133 (281)
25 COG4709 Predicted membrane pro 51.8 76 0.0016 28.4 7.4 40 56-95 97-137 (195)
26 PF02417 Chromate_transp: Chro 49.7 1E+02 0.0022 26.4 7.9 86 26-117 26-112 (169)
27 PF11990 DUF3487: Protein of u 47.1 87 0.0019 25.8 6.7 63 43-111 20-85 (121)
28 PF13829 DUF4191: Domain of un 46.9 41 0.00089 30.8 5.2 53 45-102 23-75 (224)
29 PLN02878 homogentisate phytylt 46.6 68 0.0015 30.3 6.7 31 43-73 60-90 (280)
30 PF13121 DUF3976: Domain of un 44.9 26 0.00057 23.1 2.6 19 193-211 19-37 (41)
31 KOG2466|consensus 43.7 98 0.0021 31.8 7.7 28 75-102 404-431 (572)
32 PF06295 DUF1043: Protein of u 43.7 16 0.00034 30.3 1.9 20 195-214 1-20 (128)
33 PRK10739 putative antibiotic t 41.8 1E+02 0.0022 27.5 6.8 62 43-104 30-91 (197)
34 PF13829 DUF4191: Domain of un 41.8 71 0.0015 29.3 5.9 40 83-123 30-69 (224)
35 PRK10995 inner membrane protei 41.1 1.1E+02 0.0023 27.6 7.0 59 43-101 34-92 (221)
36 PF05525 Branch_AA_trans: Bran 40.8 1.3E+02 0.0028 30.1 8.1 33 75-107 331-363 (427)
37 COG2059 ChrA Chromate transpor 40.3 2.1E+02 0.0045 25.6 8.6 78 42-119 41-119 (195)
38 PF11712 Vma12: Endoplasmic re 39.7 95 0.0021 25.9 6.0 25 97-121 99-124 (142)
39 PF01914 MarC: MarC family int 38.6 1.2E+02 0.0027 26.9 6.9 60 43-102 30-89 (203)
40 COG3763 Uncharacterized protei 35.9 29 0.00062 26.2 2.0 22 193-214 3-24 (71)
41 PRK11375 allantoin permease; P 35.5 75 0.0016 32.0 5.6 49 56-104 350-400 (484)
42 COG5346 Predicted membrane pro 35.0 77 0.0017 26.5 4.6 22 43-64 80-101 (136)
43 TIGR00427 membrane protein, Ma 34.9 1.5E+02 0.0033 26.3 6.9 51 43-93 33-83 (201)
44 COG2205 KdpD Osmosensitive K+ 34.6 2E+02 0.0042 31.5 8.5 17 198-214 476-492 (890)
45 PF12732 YtxH: YtxH-like prote 34.2 30 0.00064 25.6 1.9 14 109-122 4-17 (74)
46 PRK15083 PTS system mannitol-s 33.7 1.2E+02 0.0026 31.7 6.9 77 193-271 313-393 (639)
47 PRK01844 hypothetical protein; 31.2 37 0.0008 25.7 1.9 34 193-226 3-46 (72)
48 PRK11111 hypothetical protein; 30.9 1.9E+02 0.0042 26.0 6.9 32 43-74 36-67 (214)
49 PRK10263 DNA translocase FtsK; 29.1 2.6E+02 0.0056 32.2 8.7 34 88-121 141-174 (1355)
50 PRK11677 hypothetical protein; 28.9 52 0.0011 27.7 2.7 21 194-214 4-24 (134)
51 PF10225 DUF2215: Uncharacteri 28.5 1.6E+02 0.0036 27.1 6.2 54 50-103 9-62 (249)
52 PRK00523 hypothetical protein; 28.2 46 0.00099 25.2 2.0 34 193-226 4-47 (72)
53 PLN03140 ABC transporter G fam 27.3 2.1E+02 0.0046 33.1 7.9 40 86-130 1337-1376(1470)
54 TIGR01185 devC DevC protein. T 26.8 5.9E+02 0.013 24.6 10.8 28 194-221 347-376 (380)
55 TIGR00955 3a01204 The Eye Pigm 26.2 2.3E+02 0.0049 29.3 7.4 22 183-204 530-551 (617)
56 PRK11089 PTS system glucose-sp 26.1 3E+02 0.0065 28.0 8.0 17 89-105 189-205 (477)
57 PF11744 ALMT: Aluminium activ 26.1 3.6E+02 0.0078 26.8 8.4 42 58-99 41-82 (406)
58 PRK10110 bifunctional PTS syst 25.1 3.2E+02 0.0069 28.1 8.1 50 54-103 181-232 (530)
59 TIGR00800 ncs1 NCS1 nucleoside 25.0 1.7E+02 0.0037 28.7 6.0 47 56-102 336-383 (442)
60 TIGR01998 PTS-II-BC-nag PTS sy 24.9 2.9E+02 0.0064 27.9 7.7 79 21-105 118-201 (476)
61 COG3105 Uncharacterized protei 24.9 66 0.0014 27.1 2.6 21 194-214 9-29 (138)
62 TIGR02002 PTS-II-BC-glcB PTS s 24.1 3.4E+02 0.0073 27.7 8.0 16 90-105 207-222 (502)
63 COG3859 Predicted membrane pro 23.5 5.2E+02 0.011 22.9 9.4 42 46-87 49-92 (185)
64 TIGR03750 conj_TIGR03750 conju 22.9 3.6E+02 0.0078 22.0 6.4 31 86-116 54-87 (111)
65 PRK12821 aspartyl/glutamyl-tRN 22.8 2.7E+02 0.0058 28.3 6.7 41 79-119 99-151 (477)
66 COG5006 rhtA Threonine/homoser 22.8 6.1E+02 0.013 24.1 8.7 98 23-130 50-170 (292)
67 COG4591 LolE ABC-type transpor 22.5 7.7E+02 0.017 24.5 10.9 39 84-125 307-346 (408)
68 PF09608 Alph_Pro_TM: Putative 22.4 82 0.0018 28.9 3.0 30 186-215 202-234 (236)
69 TIGR00937 2A51 chromate transp 21.9 3.5E+02 0.0076 26.3 7.4 65 43-107 238-302 (368)
70 TIGR00852 pts-Glc PTS system, 21.8 3.4E+02 0.0074 25.2 7.1 76 24-104 72-150 (289)
71 TIGR02357 thia_yuaJ probable p 21.3 4E+02 0.0086 23.3 7.0 8 98-105 90-97 (183)
72 TIGR00937 2A51 chromate transp 21.1 2.5E+02 0.0055 27.3 6.2 65 42-106 28-93 (368)
73 PF07694 5TM-5TMR_LYT: 5TMR of 20.5 1.4E+02 0.003 24.9 3.8 25 76-100 45-69 (169)
74 TIGR02004 PTS-IIBC-malX PTS sy 20.5 4.2E+02 0.0091 27.1 7.9 19 54-72 172-190 (517)
75 PF09955 DUF2189: Predicted in 20.1 4.9E+02 0.011 21.3 8.3 38 86-123 77-114 (128)
76 PF14340 DUF4395: Domain of un 20.1 4E+02 0.0086 22.0 6.4 50 47-112 3-53 (131)
77 PRK15433 branched-chain amino 20.1 7.2E+02 0.016 25.0 9.2 33 75-107 334-366 (439)
No 1
>KOG2349|consensus
Probab=99.96 E-value=5.2e-30 Score=255.93 Aligned_cols=212 Identities=30% Similarity=0.455 Sum_probs=171.7
Q ss_pred cCccchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Q psy3973 11 RSKFSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGG 90 (285)
Q Consensus 11 ~~~~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~G 90 (285)
-.++|.|+.-||+|++++||++||++| +++|++..+++|+++++.|++|++++++++.+++++|+.++++|+.+|
T Consensus 344 A~LSsLSS~~NS~s~v~~eD~ik~~~k-----~~se~~~~~~~r~~vvv~G~~si~~~fvv~~~~~vlq~~~si~g~~~g 418 (585)
T KOG2349|consen 344 AALSSLSSIFNSLSTVFLEDYIKPLRK-----PLSERELNIAMRLFVVVLGLISIGLAFVVELLQQVLQYSQSIFGYLGG 418 (585)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhcC-----CcChHHHhhhhheeeeeehhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 467899999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCC------CCCCCCccCCCCCC-CCCcc-chhcccCCCCC
Q psy3973 91 PVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPA------PKKLPSTIEGCPNL-VPSLS-SILRLDNSVDN 162 (285)
Q Consensus 91 pllgvFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~------~~~lP~s~~gC~~~-~~~~~-~~~~~~~~~~~ 162 (285)
|++|+|+||||+||+|++||++|+++|+++++|+.+++|... +..+|.++++|... ..+.. ......+...
T Consensus 419 P~~gvF~Lgmf~pr~N~kgA~~Gli~~~~~~~wi~i~~~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~~~~~l~~~~~- 497 (585)
T KOG2349|consen 419 PLLGVFVLGMFVPRVNEKGALVGLIAGLLLMLWISIGAQIVIAPGCILPDTLPVSVEGCHYLYFAIILFTVTGLVTLLV- 497 (585)
T ss_pred cHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHhhhhhccCCccccCCCCCCccccccchhhhhhhhhccccccccC-
Confidence 999999999999999999999999999999999999988732 24689999999732 11110 0000000000
Q ss_pred CcccccccccccccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhcc---CCCCCCCCcccHHHHHHHhh
Q psy3973 163 NFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFF---DTPSYDVNLLTPWVAARARR 234 (285)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt---~~~~~d~~Ll~p~~~~~~~~ 234 (285)
..... + . .....++..+.+|++||+||+.+|+.+++++|++.|+.+ +.++.+|++++|..+++...
T Consensus 498 ~~~~~--~---~-~~~~~~~~~~~~y~is~~~y~~~g~~~~~~~~~~~s~~~~~~~~~k~~p~l~~~~~~~~~~~ 566 (585)
T KOG2349|consen 498 PSQDA--H---R-LTTSLPNSEFSFYDISELWYSVLGFLTVIVVGILLSCGLGPDGKEKLNPILLSPVEAKFLSL 566 (585)
T ss_pred ccccc--c---c-cccccccchhhhcchhhheeeecCcceEEEEEeeeeeecCcCCcCcCChhhcchhhhhhhcc
Confidence 00000 0 0 001112236789999999999999999999999999999 45789999999998877665
No 2
>PRK10484 putative transporter; Provisional
Probab=99.73 E-value=7e-17 Score=161.46 Aligned_cols=141 Identities=14% Similarity=0.283 Sum_probs=116.4
Q ss_pred cchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhhH
Q psy3973 14 FSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYL-GSVLQASLTIFGVVGGPV 92 (285)
Q Consensus 14 ~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~-g~vl~~~~si~g~~~Gpl 92 (285)
++.++..|+.|+++++|+||++.+ |+.+|+|.++++|+.++++|++++++|+..... ++++++.+...+.+.+|+
T Consensus 342 ST~~s~l~s~st~~t~Diy~~~~~----~~~s~~~~l~v~Ri~~vv~~ii~~~~a~~~~~~~~~i~~~~~~~~~~~~~pl 417 (523)
T PRK10484 342 STFNGFLNSASTLFSLDIYKPIIN----PNASEKQLVKVGKKFGFVLAIISMIVAPLIANAPQGLYSYLQQLNGIYNVPI 417 (523)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhHH
Confidence 344445555678999999999876 689999999999999999999999999766433 578888888889999999
Q ss_pred HHHHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCccccccccc
Q psy3973 93 LGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTI 172 (285)
Q Consensus 93 lgvFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (285)
+++|++|+||||+|++||++|+++|+++.++..+. |
T Consensus 418 ~~~~llgl~wkr~n~~ga~~g~i~G~~~~~~~~~~---------~----------------------------------- 453 (523)
T PRK10484 418 LAIIIVGFFTKRVPALAAKVALGFGIILYIIINFV---------L----------------------------------- 453 (523)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHHHH---------h-----------------------------------
Confidence 99999999999999999999999999875433210 0
Q ss_pred ccccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhccCC
Q psy3973 173 RYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDT 216 (285)
Q Consensus 173 ~~~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt~~ 216 (285)
+ .+++|+|...+++++++++.+++|+++++
T Consensus 454 --------~------~~~~~~~~~~~~~~~~~~v~v~vsl~~~~ 483 (523)
T PRK10484 454 --------K------FDIHFLYVLAILFVINVVVMLIIGKIKPR 483 (523)
T ss_pred --------C------CCccHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 0 12457888999999999999999999843
No 3
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=99.66 E-value=7.3e-16 Score=155.13 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=120.4
Q ss_pred ccchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH
Q psy3973 13 KFSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPV 92 (285)
Q Consensus 13 ~~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpl 92 (285)
.++.|+..|+.|+++++|+|+++.+ |+.+|++.++++|+.+++++++++.+|+.. .+.++++.....++.++++
T Consensus 380 mSt~~s~l~a~st~~~~Di~~~~~~----~~~s~~~~l~~~R~~~v~~~~~~~~~a~~~--~~~i~~l~~~~~~~~~~~~ 453 (552)
T TIGR03648 380 LSTAAGLLLVISSAISHDLYYRIIN----PNASEKQRLLVARIALVVAAVIAGYFGLNP--PGFIAQVVAFAFGLAAASF 453 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC----CCCCchhhHHHHHHHHHHHHHHHHHHHHcc--ccHHHHHHHHHHHHHHHHH
Confidence 3455555566689999999999876 588999999999999999999988887543 2457777777778888999
Q ss_pred HHHHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCccccccccc
Q psy3973 93 LGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTI 172 (285)
Q Consensus 93 lgvFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (285)
+++|++|+||||+|++||++|+++|+++.++..+..+. .| .++|+... .
T Consensus 454 ~~~~llgl~w~r~~~~ga~~g~i~G~~~~~~~~~~~~~-----~~--~~~~~~~~--~---------------------- 502 (552)
T TIGR03648 454 FPALVLGIFWKRMNREGAIAGMLTGLGFTFSYIVYFKP-----WG--FIGTNPGA--N---------------------- 502 (552)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHhccc-----cc--cccccccc--c----------------------
Confidence 99999999999999999999999999987765443211 01 12342100 0
Q ss_pred ccccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhccCC
Q psy3973 173 RYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDT 216 (285)
Q Consensus 173 ~~~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt~~ 216 (285)
. ....++.++...++++|..+++++++++|+++++
T Consensus 503 ------~---~~~~~~~~~~~~~~~i~~~v~~~v~~~vS~~t~~ 537 (552)
T TIGR03648 503 ------V---PENWWFGISPEGIGLIGMPVNFAVAIVVSLVTPP 537 (552)
T ss_pred ------C---CccccccCCcccchHHHHHHHHHHheeeecCCCC
Confidence 0 0113566778889999999999999999999843
No 4
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=99.56 E-value=5e-14 Score=140.30 Aligned_cols=101 Identities=15% Similarity=0.217 Sum_probs=78.0
Q ss_pred hhHHH--HHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhhH
Q psy3973 16 KSADQ--ELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKY-LGSVLQASLTIFGVVGGPV 92 (285)
Q Consensus 16 sS~ds--ns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~-~g~vl~~~~si~g~~~Gpl 92 (285)
||+|| |+.|+++++|+||++.+ ++.+|++.++++|+.++++|++++.+|+.... +..++..++...+ +.+
T Consensus 340 ST~~s~l~a~ss~~~~Diy~~~~~----~~~s~~~~l~~~Ri~~v~~~~~a~~~a~~~~~~i~~l~~~~~~~~~---~~~ 412 (502)
T PRK15419 340 STLSCQLLVCSSAITEDLYKAFLR----KHASQKELVWVGRVMVLVVALVAIALAANPENRVLGLVSYAWAGFG---AAF 412 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----CCCChHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHH---HHH
Confidence 44455 55578999999999876 58999999999999999999999988865433 2344444444432 333
Q ss_pred HHHHhhhhccccCChhhHHHHHHHHHHHHHH
Q psy3973 93 LGVFTLGMTVTFANQQGALAGIVSGLLFCSL 123 (285)
Q Consensus 93 lgvFlLGlf~kran~~GAl~G~i~G~lv~~w 123 (285)
..+|++|+||||+|++||++|+++|+++.++
T Consensus 413 ~p~~llgl~wkr~t~~ga~~g~i~G~~~~~~ 443 (502)
T PRK15419 413 GPVVLFSVMWSRMTRNGALAGMIIGALTVIV 443 (502)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 3357899999999999999999999987643
No 5
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=99.53 E-value=1.3e-13 Score=136.75 Aligned_cols=102 Identities=15% Similarity=0.225 Sum_probs=79.7
Q ss_pred cchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973 14 FSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL 93 (285)
Q Consensus 14 ~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll 93 (285)
+|.|+..|+.|+++++|+||++.+ ++.+|||.++++|+.++++|++++++|+.... .+++......+.+++.+.
T Consensus 333 ST~~s~l~s~ss~~~~Diy~~~~~----~~~s~~~~l~v~R~~~v~~~~~~~~~a~~~~~--~i~~l~~~~~~~~~~~~~ 406 (487)
T TIGR02121 333 STISSQLLVSSSALTEDFYKAFFK----REASQKELVMVGRLSVLVIAIIAIILAMNPNS--SILNLVGYAWAGFGAAFG 406 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC----CCCChHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHH
Confidence 444555555678999999999876 68999999999999999999999998875432 234333222233456666
Q ss_pred HHHhhhhccccCChhhHHHHHHHHHHHH
Q psy3973 94 GVFTLGMTVTFANQQGALAGIVSGLLFC 121 (285)
Q Consensus 94 gvFlLGlf~kran~~GAl~G~i~G~lv~ 121 (285)
.+|++|+||||+|++||++|+++|+++.
T Consensus 407 p~~llgl~w~r~t~~ga~~g~i~G~~~~ 434 (487)
T TIGR02121 407 PVVLFSLYWKRMTRNGALAGMIIGAVTV 434 (487)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999875
No 6
>PRK12488 acetate permease; Provisional
Probab=99.52 E-value=1.7e-13 Score=138.22 Aligned_cols=103 Identities=17% Similarity=0.157 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhh
Q psy3973 19 DQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTL 98 (285)
Q Consensus 19 dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlL 98 (285)
-.++.|+.+++|+|+++.+ +++.+|+|.++++|+.++++|++++++|+..... .+.++.....++.+++++.+|++
T Consensus 374 ~lls~st~is~Diy~~~~~---~~~~s~~~~l~v~Ri~~vvvgv~a~~~a~~~~~~-~i~~l~~~~~~~~a~~~~p~lll 449 (549)
T PRK12488 374 LALSGASAVSHDLYACVIR---KGQASEAQEMRVSKIATLGIGLLAVVLGLMFESQ-NIAFLSGLVLAIAASVNFPVLFL 449 (549)
T ss_pred HHHHHHHHHHHHHHHHhcC---CCCCChHHhhHHHHHHHHHHHHHHHHHHHccCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345578999999998764 1478999999999999999999999999865431 23333333345556777778999
Q ss_pred hhccccCChhhHHHHHHHHHHHHHHHh
Q psy3973 99 GMTVTFANQQGALAGIVSGLLFCSLVG 125 (285)
Q Consensus 99 Glf~kran~~GAl~G~i~G~lv~~wv~ 125 (285)
|+||||+|++||++|+++|+++.+++.
T Consensus 450 gl~wkr~t~~ga~ag~i~G~~~~~~~~ 476 (549)
T PRK12488 450 SMFWKGLTTRGAVAGSYAGLVSAVVLV 476 (549)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876544
No 7
>PRK09395 actP acetate permease; Provisional
Probab=99.51 E-value=1.9e-13 Score=137.76 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhhhHHHH
Q psy3973 18 ADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKY--LGSVLQASLTIFGVVGGPVLGV 95 (285)
Q Consensus 18 ~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~--~g~vl~~~~si~g~~~Gpllgv 95 (285)
...++.|+++++|+|+++.+ +++.+|++.++++|+.++++|++++++|+.... +..+++..++ +.++.++.+
T Consensus 375 s~lla~st~~~~Diy~~~~~---~~~~s~~~~l~v~Ri~~v~igi~a~~~a~~~~~~~i~~~~~~~~~---~~~~~~~p~ 448 (551)
T PRK09395 375 GLTLAGASAVSHDLYANVIK---KGKATERDELRVSKITTLVLGVVAIILGILFEKQNIAFMVGLAFA---IAASANFPV 448 (551)
T ss_pred HHHHHHHHHHHHHHHHHhcc---CccccchhhhhHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHH---HHHHHHHHH
Confidence 33444578999999999874 136899999999999999999999999976432 2345555444 445556666
Q ss_pred HhhhhccccCChhhHHHHHHHHHHHHHHHh
Q psy3973 96 FTLGMTVTFANQQGALAGIVSGLLFCSLVG 125 (285)
Q Consensus 96 FlLGlf~kran~~GAl~G~i~G~lv~~wv~ 125 (285)
+++|+||||+|++||++|+++|+++.++..
T Consensus 449 lllglfwkr~~~~gA~ag~i~G~~~~l~~~ 478 (551)
T PRK09395 449 LLLSMYWKGLTTRGAVIGGWLGLISAVVLM 478 (551)
T ss_pred HHHHHhcCCCchhhHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999876554
No 8
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=99.47 E-value=1.2e-13 Score=135.26 Aligned_cols=146 Identities=18% Similarity=0.217 Sum_probs=114.2
Q ss_pred HHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhhHHHHHhhhhcc
Q psy3973 24 TAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYL-GSVLQASLTIFGVVGGPVLGVFTLGMTV 102 (285)
Q Consensus 24 Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~-g~vl~~~~si~g~~~GpllgvFlLGlf~ 102 (285)
|+.+++|+|.+.+| ++++|||.++++|+.+++.|++++.++...+.. -.++.+++++..-...|.+ +||+||
T Consensus 368 asavsHDiY~~vik----~~ase~~~v~vaRi~~v~~~vva~~lgi~~~gnVaflVa~AF~lAaSa~fPvi---vlglfW 440 (529)
T COG4147 368 ASAVSHDLYAMVIK----KGATEKKEVRVARIAVVILGVVAILLGILPPGNVAFLVALAFALAASANFPVI---VLGLFW 440 (529)
T ss_pred HHHHHhHHHHHHhC----CCCCccceehhHHHHHHHHHHHHHHheecCCccHHHHHHHHHHHHHHcccchh---hHHHHH
Confidence 68899999999988 679999999999999999999999999888753 5666677777666666655 999999
Q ss_pred ccCChhhHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCcccccccccccccCCCCcc
Q psy3973 103 TFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIRYTDMSSSQD 182 (285)
Q Consensus 103 kran~~GAl~G~i~G~lv~~wv~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (285)
||.|.+||++|++.|+++.+...+.+..-..... +.
T Consensus 441 Kr~n~~GAi~G~~~GL~~tlv~i~l~~~i~~~~~--------------------------------------------~~ 476 (529)
T COG4147 441 KRLNTAGAIAGMLLGLIVTLVLIILSPTIWVVIL--------------------------------------------GH 476 (529)
T ss_pred hhccHHhHHHHHHHHHHHHHHHHHhCcccccccc--------------------------------------------Cc
Confidence 9999999999999999998877765421000000 00
Q ss_pred chhhccccchhHHHHHHHHHHHHHHHHhhhccCCCCCC
Q psy3973 183 QYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYD 220 (285)
Q Consensus 183 ~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt~~~~~d 220 (285)
..+.+..+++-.-+++|..+.+++.+++|+++++++-|
T Consensus 477 ~~~~~~~~~~~~~g~~sipv~F~~~~ivSllt~~~~~~ 514 (529)
T COG4147 477 PGFGWAGFPYEGPGLFSIPVGFLGAWIVSLLTKPPEED 514 (529)
T ss_pred cccccccCCCCCcchhhhhHHHHHhHheeccCCCCchH
Confidence 12334556777778899999999999999999655444
No 9
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=99.42 E-value=2.6e-12 Score=127.26 Aligned_cols=105 Identities=23% Similarity=0.345 Sum_probs=78.0
Q ss_pred hhHHHHH--HHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973 16 KSADQEL--ETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL 93 (285)
Q Consensus 16 sS~dsns--~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll 93 (285)
||+|+.+ .|+++++|+|+++.| +++.+||+.++++|+.++++|++++++|+...+. +.....-..+...++++
T Consensus 334 ST~~s~l~~~ss~~~~Di~~~~~~---~~~~s~~~~~~v~r~~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~ 408 (483)
T PRK09442 334 STVDSQLLQSSSTIIKDLYLNIRP---DQIANEKKLKRISLIITLILGLLVLLAALKPPDM--IIWLNLFAFGGLEAVFL 408 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---CCCCChHHHHHHHHHHHHHHHHHHHHHHhCCchH--HHHHHHHHHHHHHHHHH
Confidence 4555544 468899999999554 0127999999999999999999999999765432 12111111223456677
Q ss_pred HHHhhhhccccCChhhHHHHHHHHHHHHHHHh
Q psy3973 94 GVFTLGMTVTFANQQGALAGIVSGLLFCSLVG 125 (285)
Q Consensus 94 gvFlLGlf~kran~~GAl~G~i~G~lv~~wv~ 125 (285)
.++++|+||||.|++||++|+++|+++.++..
T Consensus 409 ~p~~lgl~w~r~~~~ga~~~~i~G~~~~~~~~ 440 (483)
T PRK09442 409 WPIVLGLYWERANATGALASMIVGLVSYLLLA 440 (483)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999998865543
No 10
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=99.41 E-value=1.4e-12 Score=131.64 Aligned_cols=99 Identities=14% Similarity=0.217 Sum_probs=78.4
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhhhHHHHHhh
Q psy3973 21 ELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKY--LGSVLQASLTIFGVVGGPVLGVFTL 98 (285)
Q Consensus 21 ns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~--~g~vl~~~~si~g~~~GpllgvFlL 98 (285)
|+.|+.+++|+|+++.+ +++.+|++.++++|+.++++|++++++|+.... +..+++.+++ +.+++++.+|++
T Consensus 376 ~a~st~i~~Diy~~~~~---~~~~s~~~~~~v~Ri~~vv~g~ia~~~a~~~~~~~i~~l~~~~~~---~~a~~~~p~lll 449 (549)
T TIGR02711 376 LAGASAVSHDLYANVIK---KGKATERDELRVSKITVLILGVIAIGLGILFENQNIAFMVGLAFS---IAASCNFPIILL 449 (549)
T ss_pred HHHHHHHHHHHHHHhcC---CCCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH---HHHHHHHHHHHH
Confidence 44578999999999874 146899999999999999999999999987543 2344444444 444556666899
Q ss_pred hhccccCChhhHHHHHHHHHHHHHHHh
Q psy3973 99 GMTVTFANQQGALAGIVSGLLFCSLVG 125 (285)
Q Consensus 99 Glf~kran~~GAl~G~i~G~lv~~wv~ 125 (285)
|+||||+|++||++|+++|+++.+...
T Consensus 450 gl~Wkr~n~~GA~ag~i~G~~~~~~~~ 476 (549)
T TIGR02711 450 SMYWSKLTTRGAMIGGWLGLITAVVLM 476 (549)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998866544
No 11
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=99.37 E-value=8.2e-12 Score=124.55 Aligned_cols=143 Identities=22% Similarity=0.332 Sum_probs=108.6
Q ss_pred cchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhhH
Q psy3973 14 FSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYL-GSVLQASLTIFGVVGGPV 92 (285)
Q Consensus 14 ~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~-g~vl~~~~si~g~~~Gpl 92 (285)
++-|+..++.|+++++|+||++.| ++++||+.++++|+.+++++++++++++..... ..+..+.+.. +++|+
T Consensus 340 St~ss~ll~~ss~~t~Diyk~~~~----~~a~~k~l~~i~r~~v~vi~~~a~~~a~~~~~~i~~l~~~~~~g---~~a~~ 412 (493)
T COG0591 340 STASSQLLVASSAITRDIYKRFLR----KNASEKELVRIGRVVVLVIALLALLLALLPPSSILGLVSLALAG---FGAQF 412 (493)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhC----CCCChhHhhHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHH---HHHHH
Confidence 344555555679999999999988 589999999999999999999999877776544 3455555544 34488
Q ss_pred HHHHhhhhccccCChhhHHHHHHHHHHHHHHH--hhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCccccccc
Q psy3973 93 LGVFTLGMTVTFANQQGALAGIVSGLLFCSLV--GFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDAT 170 (285)
Q Consensus 93 lgvFlLGlf~kran~~GAl~G~i~G~lv~~wv--~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (285)
++.+++|+||||+|++|++.|+++|+++.++. ......
T Consensus 413 ~p~~~~~L~wkr~t~~ga~agmi~G~i~~~~~~~~~~~~~---------------------------------------- 452 (493)
T COG0591 413 LPALLLGLFWKRATKRGAIAGMIAGLIVVLLTWLLFLKSF---------------------------------------- 452 (493)
T ss_pred HHHHhheeeeccchHhHHHHHHHHHHHHHHHHHHhhcCcc----------------------------------------
Confidence 88899999999999999999999999986553 211100
Q ss_pred ccccccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhccCC
Q psy3973 171 TIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDT 216 (285)
Q Consensus 171 ~~~~~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt~~ 216 (285)
+...+ ....+|-.+.+++++.++..++|+++++
T Consensus 453 ----------~~~~~---~~~~~~~~v~~fiv~~~~~~~~sl~~~~ 485 (493)
T COG0591 453 ----------PYGAF---ALGGLYEVVPGFIVNLLVTVVVSLLTKA 485 (493)
T ss_pred ----------ccchh---cchhHHHHHHHHHHHHHHHHhhcccCCC
Confidence 00001 3556777889999999999999999844
No 12
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=99.35 E-value=1.3e-11 Score=121.77 Aligned_cols=105 Identities=18% Similarity=0.177 Sum_probs=78.3
Q ss_pred cchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973 14 FSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL 93 (285)
Q Consensus 14 ~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll 93 (285)
++.++..|+.|+++++|+||++.+ |+.+|++.++++|+.++++|++++++|+........+. ... .+...++.+
T Consensus 333 ST~~s~l~~~ss~~~~Diy~~~~~----~~~~~~~~~~~~r~~~~~~g~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~~~ 406 (471)
T TIGR02119 333 STVNSLLLQSSSTIIKDLYLNYIP----KEAKESKIKKISMCITLIIGLLVIIAAIKPPDLIIWLN-LFA-FGGLEAAFI 406 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC----CCCChHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHH-HHH-HHHHHHHHH
Confidence 344444455678999999999987 58899999999999999999999888875443211111 111 223345566
Q ss_pred HHHhhhhccccCChhhHHHHHHHHHHHHHHH
Q psy3973 94 GVFTLGMTVTFANQQGALAGIVSGLLFCSLV 124 (285)
Q Consensus 94 gvFlLGlf~kran~~GAl~G~i~G~lv~~wv 124 (285)
.++++|+||||+|++||++|+++|++..+..
T Consensus 407 ~plllgl~w~r~t~~ga~~~~i~G~~~~~~~ 437 (471)
T TIGR02119 407 WPIVLGLYWKRANATGALASMIVGVGSYITL 437 (471)
T ss_pred HHHHHHHhcCcCcHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999999999998875443
No 13
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=99.34 E-value=2.4e-12 Score=124.03 Aligned_cols=97 Identities=23% Similarity=0.427 Sum_probs=76.8
Q ss_pred hhHHHHHH--HHHHHHHhhhcccCCCCCCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH
Q psy3973 16 KSADQELE--TAELSLSHCQPLYSYSTNRT-ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPV 92 (285)
Q Consensus 16 sS~dsns~--Sav~~~D~yk~~~~~~~~~~-~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpl 92 (285)
||+|+.++ |+.+++|+|++++| ++ .+|++.++++|+.++++|++++.+++.....+ +++......+.+.+++
T Consensus 307 ST~~s~l~a~ss~~~~Di~~~~~~----~~~~s~~~~~~~~ri~~~v~~~i~~~la~~~~~~~-i~~~~~~~~~~~~~~~ 381 (406)
T PF00474_consen 307 STADSLLLAISSIFSRDIYKPFIK----PNSASEKQLLRVSRIAIVVIGIIAILLALFFPDSG-IIDLILFAFGILAAPF 381 (406)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCC-----SS-S-SSHHHHHHHHHHHHHHHHHHHHGGGGGGSS-HHHHHHHHHTTTHHHH
T ss_pred HHHHHHHhhhhhhhhHHhhhcccc----ccccchhhhhhccceeEEeeHHhHHHHHhccccch-HHHHHHHHHHHHHHHH
Confidence 55555554 68999999999887 35 89999999999999999999988887665433 7777777778888999
Q ss_pred HHHHhhhhccccCChhhHHHHHHHH
Q psy3973 93 LGVFTLGMTVTFANQQGALAGIVSG 117 (285)
Q Consensus 93 lgvFlLGlf~kran~~GAl~G~i~G 117 (285)
++++++|+||||+|++||++|+++|
T Consensus 382 ~~~~~~gl~wkr~t~~ga~~~~i~G 406 (406)
T PF00474_consen 382 FPPLLLGLYWKRATKRGAIAGMIVG 406 (406)
T ss_dssp HHHHHHHHH-TT--HHHHHHHHH--
T ss_pred HHHHHHhhccCCCCHHHHhhheeeC
Confidence 9999999999999999999999987
No 14
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=99.21 E-value=3.9e-11 Score=116.08 Aligned_cols=96 Identities=24% Similarity=0.388 Sum_probs=79.9
Q ss_pred hhHHHHH--HHHHHHHHhhhcccCCCCCCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhH
Q psy3973 16 KSADQEL--ETAELSLSHCQPLYSYSTNRTIS-DRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPV 92 (285)
Q Consensus 16 sS~dsns--~Sav~~~D~yk~~~~~~~~~~~s-e~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpl 92 (285)
|++|+.+ .|+++++|+||++.+ |+.+ |++.++++|+.++++++++++++.. ..+++++......+..++++
T Consensus 309 ST~~s~l~a~ss~~~~Di~~~~~~----~~~~~~~~~~~~~r~~~~~~~~i~~~~~~~--~~~~i~~~~~~~~~~~~~~~ 382 (407)
T TIGR00813 309 STLSSQLNSASTVFTMDLYKKIIR----PNASGEKKIVMRGRIAVLVAAVIAGFVAAA--QGGQVLQYVQEAFGGLGAPF 382 (407)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhcC----CccchhhhhhHHHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHhcchH
Confidence 4455544 468999999999877 4666 8889999999999999999875433 23567777777788889999
Q ss_pred HHHHhhhhccccCChhhHHHHHHHH
Q psy3973 93 LGVFTLGMTVTFANQQGALAGIVSG 117 (285)
Q Consensus 93 lgvFlLGlf~kran~~GAl~G~i~G 117 (285)
++++++|+||||+|++||++|+++|
T Consensus 383 ~~pl~lgl~w~r~~~~ga~~~~i~G 407 (407)
T TIGR00813 383 LPVFLLGIFWKRMNAKGALAGMIAG 407 (407)
T ss_pred HHHHHHHHhcCcCChHhHHHHhhcC
Confidence 9999999999999999999999876
No 15
>COG4146 Predicted symporter [General function prediction only]
Probab=98.92 E-value=3.6e-09 Score=101.61 Aligned_cols=139 Identities=9% Similarity=0.187 Sum_probs=118.3
Q ss_pred cchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhhH
Q psy3973 14 FSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYL-GSVLQASLTIFGVVGGPV 92 (285)
Q Consensus 14 ~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~-g~vl~~~~si~g~~~Gpl 92 (285)
++=....||.++.++.|+|+|.++ ++++|+|++.++|.+..+.+++++.+|+....- ++++.+...+.|+..-|+
T Consensus 343 StFN~fLNSa~Tlf~~diy~~I~k----~na~e~eLv~~grkf~a~~Ai~sv~iaP~i~~apqGly~~~k~~nGfynvPi 418 (571)
T COG4146 343 STFNGFLNSASTLFSMDIYRRIIK----QNAEEQELVTVGRKFGAFIAIVSVLIAPWIANAPQGLYSWMKQLNGFYNVPI 418 (571)
T ss_pred HHHHHHhhhhhHHhhhhhhhHhhc----CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcccchh
Confidence 344556788889999999999988 799999999999999999999999999998776 789999999999999999
Q ss_pred HHHHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCccccccccc
Q psy3973 93 LGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTI 172 (285)
Q Consensus 93 lgvFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (285)
.++++.|+|.||+.+.+|-+.+..+++. |..+
T Consensus 419 va~~ivGfF~k~vpalAakva~~ihvil--Y~~i---------------------------------------------- 450 (571)
T COG4146 419 VAIIIVGFFFKRVPALAAKVAMGIHVIL--YITI---------------------------------------------- 450 (571)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHhhhee--EeeE----------------------------------------------
Confidence 9999999999999999999888877654 1110
Q ss_pred ccccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhcc
Q psy3973 173 RYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFF 214 (285)
Q Consensus 173 ~~~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt 214 (285)
..-..++++|+|.-..-|++.++|.+++.++-
T Consensus 451 ----------~~vv~~~vnFlYVla~lF~inVvVMLviGflK 482 (571)
T COG4146 451 ----------NYVVKFDVNFLYVLACLFCINVVVMLVIGFLK 482 (571)
T ss_pred ----------EEEEEEEeeeehhHHHHHHHHhHHHHhhhccc
Confidence 00123578999999999999999999999664
No 16
>KOG2348|consensus
Probab=98.62 E-value=5.9e-09 Score=102.08 Aligned_cols=106 Identities=19% Similarity=0.160 Sum_probs=90.0
Q ss_pred hhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHH
Q psy3973 16 KSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGV 95 (285)
Q Consensus 16 sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpllgv 95 (285)
.|+.....|++++.|+||.|++ +++|.||++++++..++++|+.+-++|....+.|--+.+....+|+.-||..-.
T Consensus 366 ~SaELIAvSSvfTYDIYr~Yi~----PrAsGkell~~sh~avi~Fg~~M~~~av~l~y~gismg~iy~~mGili~~AV~p 441 (667)
T KOG2348|consen 366 TSAELIAVSSVFTYDIYRNYIR----PRASGKELLYTSHVAVIIFGVAMGGLAVGLNYGGISMGWIYLFMGILIGPAVFP 441 (667)
T ss_pred cchhheeehhhhehHHHHhhcC----CccCcceeEEEeeeeeehhHHHHHhHhhhhhhcceeHHHHHHHHHHHhcchhHh
Confidence 3445555589999999999988 799999999999999999999998888887766655667777888999998888
Q ss_pred HhhhhccccCChhhHHHHHHHHHHH--HHHHh
Q psy3973 96 FTLGMTVTFANQQGALAGIVSGLLF--CSLVG 125 (285)
Q Consensus 96 FlLGlf~kran~~GAl~G~i~G~lv--~~wv~ 125 (285)
..+-++|+|+|..||.+|-..|.+. +.|+.
T Consensus 442 it~~l~~kkmn~~~~iv~~~lG~i~~IitWl~ 473 (667)
T KOG2348|consen 442 ITLTLLWKKMNKYGAIVGPPLGSITGIITWLV 473 (667)
T ss_pred HHHHHHHHHhhhhhEeecCcccchhhhhhhhh
Confidence 8999999999999999998888765 45654
No 17
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=98.25 E-value=3.2e-06 Score=81.61 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=76.6
Q ss_pred hhHHHHHH--HHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973 16 KSADQELE--TAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL 93 (285)
Q Consensus 16 sS~dsns~--Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll 93 (285)
|++||++. |+++..|+|..... +..+|++..+++++.++++|.+-+..|+-...+ +.+.-.--.|..-...+
T Consensus 332 STIds~L~~~sstliKdLy~~~~~----~~~~E~ki~~is~~~t~i~~~l~~i~al~Pp~~--iiwlnlfAfggle~~Fl 405 (473)
T COG4145 332 STINSQLLQSSSTLIKDLYLNVRD----KLKNERKIKRISMIATLIFGALLLIAALNPPEM--IIWLNLFAFGGLEAVFL 405 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHhhCCcce--eeeeehhhhcchhhHHH
Confidence 78899886 78999999998763 377999999999999999999988888766543 11111111122233445
Q ss_pred HHHhhhhccccCChhhHHHHHHHHHHHHH
Q psy3973 94 GVFTLGMTVTFANQQGALAGIVSGLLFCS 122 (285)
Q Consensus 94 gvFlLGlf~kran~~GAl~G~i~G~lv~~ 122 (285)
-+.++|++|.++|+.||++.|++|++...
T Consensus 406 ~plvlgLYw~kaNa~ga~aSMi~g~~~y~ 434 (473)
T COG4145 406 WPLVLGLYWEKANAAGALASMIVGLVLYV 434 (473)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 55689999999999999999999998843
No 18
>KOG3761|consensus
Probab=98.14 E-value=4.8e-07 Score=86.20 Aligned_cols=98 Identities=20% Similarity=0.225 Sum_probs=79.9
Q ss_pred hhHHHHHHH--HHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973 16 KSADQELET--AELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL 93 (285)
Q Consensus 16 sS~dsns~S--av~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll 93 (285)
||+||..+| +.+.+++||--+| +++|||+.++++|+.++.+|+.++.||++...+-+++-+. ..+.+--++
T Consensus 356 ssadssilsaasmfa~ni~kls~r----~~asdkeii~vmriai~~~g~~at~mal~~ksiyglwyl~---adlvyiiif 428 (591)
T KOG3761|consen 356 SSADSSILSAASMFAHNIWKLSFR----PHASDKEIIIVMRIAIFCFGAMATAMALLIKSIYGLWYLC---ADLVYIIIF 428 (591)
T ss_pred hccchHhhhHHHHHhhhhheeeec----cCCCCceEEEEEEehhhhhhHHHHHHHHHHHHHHHHHHHh---hceeEeEec
Confidence 678887664 6789999997666 6999999999999999999999999999987655544433 344555566
Q ss_pred HHHhhhhccccCChhhHHHHHHHHHHH
Q psy3973 94 GVFTLGMTVTFANQQGALAGIVSGLLF 120 (285)
Q Consensus 94 gvFlLGlf~kran~~GAl~G~i~G~lv 120 (285)
.-.+.-+|.|+.|..|+++|-..|+.+
T Consensus 429 pqllcvl~m~~sntygalagy~~gl~l 455 (591)
T KOG3761|consen 429 PQLLCVLFMKGSNTYGALAGYASGLFL 455 (591)
T ss_pred cceeeEEEecCCCcchhhhhhheeeEE
Confidence 666888899999999999999999754
No 19
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=76.01 E-value=18 Score=29.28 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=26.8
Q ss_pred hhHHHHHhhhhc-cccCChhhHHHHHHHHHHHHHHHh
Q psy3973 90 GPVLGVFTLGMT-VTFANQQGALAGIVSGLLFCSLVG 125 (285)
Q Consensus 90 GpllgvFlLGlf-~kran~~GAl~G~i~G~lv~~wv~ 125 (285)
...+++|+-|++ -||+.+||-++|+++|++..+.+.
T Consensus 46 i~~ls~~~GG~~a~~~~~~kG~l~G~~~Gl~y~~il~ 82 (116)
T PF12670_consen 46 IYILSVFIGGFYAGRKAGSKGWLHGLLVGLLYFLILL 82 (116)
T ss_pred HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 344555666665 489999999999999988755443
No 20
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=67.75 E-value=73 Score=30.93 Aligned_cols=65 Identities=22% Similarity=0.238 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhhcc-ccCC-h----hhHHHHHHHHHHHHH
Q psy3973 56 LTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTV-TFAN-Q----QGALAGIVSGLLFCS 122 (285)
Q Consensus 56 ~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLGlf~-kran-~----~GAl~G~i~G~lv~~ 122 (285)
.+++.++++++++.... -+.++-.++..|++.+|+.|+.+.-.|. ||.+ . .-|+.+.++|+++..
T Consensus 284 ~~~i~~ii~~~l~~~~~--~~~f~~FL~~lg~~~~P~~gI~i~Dy~l~rr~~~~~g~N~~a~~a~~ig~~~~~ 354 (386)
T TIGR02358 284 LAIGVGVLGTLIALLFP--VDKYENFLLLIGSVFAPLYAVVFVDFFVVKRRRLSGYLNFQALVSWIIGFILYH 354 (386)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHheeecccccCCCcHHHHHHHHHHHHHHH
Confidence 34456666666665432 2446667788899999999999999986 5433 1 456667777777643
No 21
>PRK11017 codB cytosine permease; Provisional
Probab=63.88 E-value=72 Score=31.14 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhhcc-ccCCh------------hhHHHHHHHHHHHHH
Q psy3973 56 LTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTV-TFANQ------------QGALAGIVSGLLFCS 122 (285)
Q Consensus 56 ~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLGlf~-kran~------------~GAl~G~i~G~lv~~ 122 (285)
.+++.|++++++++. -... ++.++...|.+.+|+.|+.+.-.|. ||.+- .-|++..++|+++..
T Consensus 294 ~~ii~~vi~~~i~~~--~~~~-~~~FL~~lg~~l~P~~gI~i~Dy~l~rr~~~~~~~~~~~~g~N~~a~~a~~ig~~~~~ 370 (404)
T PRK11017 294 LTVVNGIIGTVLALW--LYNN-FVGWLTLLGSAIPPVGGVIIADYFMNRRGRYPDFATARLPRVNWAAILAVALGAAAGH 370 (404)
T ss_pred HHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHhhhhHhhhhhheeeeeccCccchhhccccCcCHHHHHHHHHHHHHHH
Confidence 456778888877776 2233 5677777889999999999999886 44221 236667777776654
No 22
>PLN02776 prenyltransferase
Probab=61.97 E-value=85 Score=30.46 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=21.9
Q ss_pred cccCChhhHHHHHHHHH--HHHHHHhhCCCC
Q psy3973 102 VTFANQQGALAGIVSGL--LFCSLVGFGGPK 130 (285)
Q Consensus 102 ~kran~~GAl~G~i~G~--lv~~wv~iga~~ 130 (285)
.||.+....+.|.+.|. .++.|..+...+
T Consensus 119 lKR~t~~~~~lG~~~Ga~ppL~Gw~Avtg~~ 149 (341)
T PLN02776 119 LKQIHPANTWVGAVVGAIPPLMGWAAASGQL 149 (341)
T ss_pred HccCCchhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 78888888888999883 346787776554
No 23
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=61.91 E-value=56 Score=30.77 Aligned_cols=97 Identities=13% Similarity=0.057 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhccc-CCC---CC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHh
Q psy3973 23 ETAELSLSHCQPLY-SYS---TN-RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFT 97 (285)
Q Consensus 23 ~Sav~~~D~yk~~~-~~~---~~-~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFl 97 (285)
.|+...+|++.+-. ++. ++ +-++.+-..+-+.++.++..+++++.++..+.. -. .++...+.+++
T Consensus 51 sag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~~~~ln~l----~~------~l~~~~~~l~~ 120 (286)
T PRK12895 51 TSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFLLNRL----VF------ILSPIVIFLFI 120 (286)
T ss_pred HHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHH----HH------HHHHHHHHHHH
Confidence 46788999987643 211 00 111222223334444444444443333322211 11 12222344455
Q ss_pred hhhccccCChhh-HHHHHHHHHHH-HHHHhhCCC
Q psy3973 98 LGMTVTFANQQG-ALAGIVSGLLF-CSLVGFGGP 129 (285)
Q Consensus 98 LGlf~kran~~G-Al~G~i~G~lv-~~wv~iga~ 129 (285)
.--+.||.+..+ ++.|+..|... ..|..+...
T Consensus 121 ~yp~~KR~t~~~~~~lG~~~g~~~l~g~~Av~g~ 154 (286)
T PRK12895 121 IDPFLKRYTAWRHIYMGSIIGLGVLAGYLAVIPA 154 (286)
T ss_pred HHHHHHhCccccHHHHHHHHHhHHHHHHHHHcCC
Confidence 556789999888 67888888655 567666543
No 24
>COG3302 DmsC DMSO reductase anchor subunit [General function prediction only]
Probab=55.03 E-value=1.2e+02 Score=28.74 Aligned_cols=48 Identities=15% Similarity=-0.032 Sum_probs=29.4
Q ss_pred HHhhhhhHHHHHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCC
Q psy3973 85 FGVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPA 132 (285)
Q Consensus 85 ~g~~~GpllgvFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~ 132 (285)
+|..++.+.|++.|+.+.++..+-+..+-+++.++-.+.+...+|+|.
T Consensus 86 ~~~lf~a~~Gl~~L~~~l~k~~~~~~~~l~laav~Gvvfv~~m~~VY~ 133 (281)
T COG3302 86 AGSLFFALAGLGWLLAVLKKMTALGNLWLLLAAVLGVVFVWMMAQVYS 133 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHhhhc
Confidence 355566677999999999887666664433333333334444456653
No 25
>COG4709 Predicted membrane protein [Function unknown]
Probab=51.79 E-value=76 Score=28.43 Aligned_cols=40 Identities=33% Similarity=0.533 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHhhhhhHHHH
Q psy3973 56 LTFIYGLVCLCIAYLAKYLG-SVLQASLTIFGVVGGPVLGV 95 (285)
Q Consensus 56 ~~li~Gvl~i~~A~~~~~~g-~vl~~~~si~g~~~Gpllgv 95 (285)
+.+++|+++.++|+++.... -+--++...+|+++|+++|+
T Consensus 97 Lpl~~~vi~~viailv~~lt~if~~~a~~~agil~g~~~~~ 137 (195)
T COG4709 97 LPLLIGVILFVIAILVAALTLIFSGWALVAAGILGGVILGV 137 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhH
Confidence 34455666666666655432 22333444456666655554
No 26
>PF02417 Chromate_transp: Chromate transporter; InterPro: IPR003370 This entry represents chromate transporters (CHR) [, ]. These proteins reduce chromate accumulation and are essential for chromate resistance. They are composed of one or two copies of this region. The short-chain CHR proteins form heterodimer transporters which efflux chromate ions from the cytoplasm, while the long chain CHR proteins appear to have arisen from a gene fusion event of two short chain transporters[].; GO: 0015109 chromate transmembrane transporter activity, 0015703 chromate transport
Probab=49.70 E-value=1e+02 Score=26.36 Aligned_cols=86 Identities=10% Similarity=0.066 Sum_probs=59.6
Q ss_pred HHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhhhhHHHHHhhhhcccc
Q psy3973 26 ELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLA-KYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTF 104 (285)
Q Consensus 26 v~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~-~~~g~vl~~~~si~g~~~GpllgvFlLGlf~kr 104 (285)
.+-+++.+++ +-.||+|....--+.-..=|-.++=+|.++ .+..+..-...+..+.+.+|.+-+.+++.++.+
T Consensus 26 ~~~~~~V~~~------~wlt~~~f~~~~al~q~~PGP~~~n~a~~iG~~~~G~~Gai~a~~~~~lP~~l~~~~~~~~~~~ 99 (169)
T PF02417_consen 26 LIQREFVERR------GWLTEEEFLEGLALAQALPGPIAINLATFIGYRLAGFLGAIVATIGFILPSFLLILLLSPLYSR 99 (169)
T ss_pred HHHHHHhHcc------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555543 368999988777776666677766444444 345778888888899999999999999999988
Q ss_pred CChhhHHHHHHHH
Q psy3973 105 ANQQGALAGIVSG 117 (285)
Q Consensus 105 an~~GAl~G~i~G 117 (285)
......+-+++-|
T Consensus 100 ~~~~~~v~~~l~g 112 (169)
T PF02417_consen 100 FRENPWVQAFLKG 112 (169)
T ss_pred HcccHHHHHHHHH
Confidence 7654444433333
No 27
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=47.10 E-value=87 Score=25.84 Aligned_cols=63 Identities=25% Similarity=0.286 Sum_probs=36.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhhcc---ccCChhhHH
Q psy3973 43 TISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTV---TFANQQGAL 111 (285)
Q Consensus 43 ~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLGlf~---kran~~GAl 111 (285)
.+|..|...+.-...++..++++.+|++... .+....+.+-+|++++|+.|-+. ||..+.+-+
T Consensus 20 GlT~~El~~~a~~~~~~g~~~gl~la~~~g~------~a~~pt~~ll~~~~~v~~gg~~l~rlKRGKP~~yl 85 (121)
T PF11990_consen 20 GLTADELGLAAGVGFVAGLVVGLPLALLTGW------WAMIPTGALLGPILGVFVGGKLLARLKRGKPEGYL 85 (121)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHcCCchhHH
Confidence 6788888777777776666666666666432 11223334556666666665543 344444444
No 28
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=46.93 E-value=41 Score=30.79 Aligned_cols=53 Identities=17% Similarity=-0.004 Sum_probs=28.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhhcc
Q psy3973 45 SDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTV 102 (285)
Q Consensus 45 se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLGlf~ 102 (285)
+|+...++.=...++..++.++++++.. -.+.+.+.|+..|-+++.|+++--.
T Consensus 23 ~dp~l~~~ml~a~l~~~~v~v~ig~l~~-----~~~~~~i~gi~~g~l~am~vl~rra 75 (224)
T PF13829_consen 23 EDPKLPWLMLGAFLGPIAVFVLIGLLFG-----SWWYWLIIGILLGLLAAMIVLSRRA 75 (224)
T ss_pred HCcchHHHHHHHHHHHHHHHHHHHHHHc-----cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444444444444444443 2355566677777777777665433
No 29
>PLN02878 homogentisate phytyltransferase
Probab=46.62 E-value=68 Score=30.35 Aligned_cols=31 Identities=3% Similarity=0.085 Sum_probs=23.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3973 43 TISDRRGGQLSKVLTFIYGLVCLCIAYLAKY 73 (285)
Q Consensus 43 ~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~ 73 (285)
=+|.+-..+.+++.++++++++.++|++...
T Consensus 60 IpSG~iS~~~a~~~~~~~~~lg~~la~~~g~ 90 (280)
T PLN02878 60 LASGEFSVATGVAIVTSFAIMSFGMGWIVGS 90 (280)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 4566666777888888888888888877653
No 30
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=44.89 E-value=26 Score=23.10 Aligned_cols=19 Identities=37% Similarity=0.716 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy3973 193 MYYIVLGFCVTMLVGAIVS 211 (285)
Q Consensus 193 l~ys~iG~~itivVG~lvS 211 (285)
=+|-++|+++.+.+|+++-
T Consensus 19 gfykligclvvmfigiivm 37 (41)
T PF13121_consen 19 GFYKLIGCLVVMFIGIIVM 37 (41)
T ss_pred hHHHHHHHHHHHHHHHHhe
Confidence 3577899999999998873
No 31
>KOG2466|consensus
Probab=43.70 E-value=98 Score=31.85 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhhhcc
Q psy3973 75 GSVLQASLTIFGVVGGPVLGVFTLGMTV 102 (285)
Q Consensus 75 g~vl~~~~si~g~~~GpllgvFlLGlf~ 102 (285)
++-+-.+++-.+++-+|+.|+++.=-|.
T Consensus 404 Ss~F~t~LssysvfLspiagViiaDyF~ 431 (572)
T KOG2466|consen 404 SSKFLTALSSYSVFLSPIAGVIIADYFL 431 (572)
T ss_pred ccHHHHHHHHHHHHHhhccceEeehhhe
Confidence 3444477777888999999997765443
No 32
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.65 E-value=16 Score=30.27 Aligned_cols=20 Identities=25% Similarity=0.793 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q psy3973 195 YIVLGFCVTMLVGAIVSRFF 214 (285)
Q Consensus 195 ys~iG~~itivVG~lvS~lt 214 (285)
|+++|+++.++||+++..++
T Consensus 1 y~~i~lvvG~iiG~~~~r~~ 20 (128)
T PF06295_consen 1 YAIIGLVVGLIIGFLIGRLT 20 (128)
T ss_pred ChHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999998
No 33
>PRK10739 putative antibiotic transporter; Provisional
Probab=41.80 E-value=1e+02 Score=27.47 Aligned_cols=62 Identities=16% Similarity=0.194 Sum_probs=42.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhhcccc
Q psy3973 43 TISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTF 104 (285)
Q Consensus 43 ~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLGlf~kr 104 (285)
+.++++.-+++|-.++...++.+..++.-+.+-..+.....-.-+.+|-++-++-+-|..++
T Consensus 30 ~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fGIsl~afrIAGGilL~~ial~ml~~~ 91 (197)
T PRK10739 30 HLEPKRRRAIMIRELLIALLVMLVFLFAGEKILAFLNLRTETVSISGGIILFLIAIKMIFPS 91 (197)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67888888899988888888887777776655445555555555666666666666665544
No 34
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=41.79 E-value=71 Score=29.26 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=23.8
Q ss_pred HHHHhhhhhHHHHHhhhhccccCChhhHHHHHHHHHHHHHH
Q psy3973 83 TIFGVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSL 123 (285)
Q Consensus 83 si~g~~~GpllgvFlLGlf~kran~~GAl~G~i~G~lv~~w 123 (285)
.+.+.+-+|++..+++|+++. .-....+.|+++|+++..+
T Consensus 30 ~ml~a~l~~~~v~v~ig~l~~-~~~~~~i~gi~~g~l~am~ 69 (224)
T PF13829_consen 30 LMLGAFLGPIAVFVLIGLLFG-SWWYWLIIGILLGLLAAMI 69 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHHH
Confidence 334456677777778888876 2233455566666665443
No 35
>PRK10995 inner membrane protein; Provisional
Probab=41.12 E-value=1.1e+02 Score=27.61 Aligned_cols=59 Identities=10% Similarity=0.188 Sum_probs=36.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhhc
Q psy3973 43 TISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMT 101 (285)
Q Consensus 43 ~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLGlf 101 (285)
+.++++.-+++|-.++...++.+..++..+.+-..+.......-+.+|-++-.+-+-|.
T Consensus 34 ~~~~~~r~~ia~~~~~~a~~ill~f~~~G~~il~~fgIs~~a~rIaGGilL~~igi~ml 92 (221)
T PRK10995 34 NMTPEERNRQALMASVYVFAIMMVAFYAGQLVMSTFGISIPGLRIAGGLIVAFIGFRML 92 (221)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHh
Confidence 67888899999998888888887777665544333333333333444444444444443
No 36
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=40.82 E-value=1.3e+02 Score=30.13 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhhhccccCCh
Q psy3973 75 GSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQ 107 (285)
Q Consensus 75 g~vl~~~~si~g~~~GpllgvFlLGlf~kran~ 107 (285)
..+++++.=+..+.+++...+-+++++-|+.+.
T Consensus 331 ~~Ii~~s~PiL~~iYP~~IvLIll~l~~~~~~~ 363 (427)
T PF05525_consen 331 DQIIKISVPILMFIYPVAIVLILLNLFDKFIKN 363 (427)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC
Confidence 579999999999999999999999999887765
No 37
>COG2059 ChrA Chromate transport protein ChrA [Inorganic ion transport and metabolism]
Probab=40.34 E-value=2.1e+02 Score=25.56 Aligned_cols=78 Identities=18% Similarity=0.219 Sum_probs=62.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhhhhHHHHHhhhhccccCChhhHHHHHHHHHH
Q psy3973 42 RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYL-GSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLL 119 (285)
Q Consensus 42 ~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~-g~vl~~~~si~g~~~GpllgvFlLGlf~kran~~GAl~G~i~G~l 119 (285)
+-+||++...+--+.-++=|-.++=+|.++... ++..-......+.+.++++.+..+..+..+....-...+++-|+-
T Consensus 41 ~Wis~~ef~~~laisq~lPGP~a~~la~~vGy~~~G~~Ga~ia~lafvLPs~i~~~~l~~~~~~~~~~~~v~~~~~glk 119 (195)
T COG2059 41 KWISEEEFADALAISQLLPGPIATQLAIYVGYKLAGILGALIAGLAFVLPSILIMLGLALLLKRFGDLPLVKGILKGLK 119 (195)
T ss_pred cCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence 379999999999899999999999999888754 778888888888899999999999888888876655555555543
No 38
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=39.72 E-value=95 Score=25.89 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=15.0
Q ss_pred hhhhcc-ccCChhhHHHHHHHHHHHH
Q psy3973 97 TLGMTV-TFANQQGALAGIVSGLLFC 121 (285)
Q Consensus 97 lLGlf~-kran~~GAl~G~i~G~lv~ 121 (285)
..+..+ .+-....++.|+++|+++.
T Consensus 99 ~~~~~~~~~~~~~Rvllgl~~al~vl 124 (142)
T PF11712_consen 99 WAGYSFGGWSFPYRVLLGLFGALLVL 124 (142)
T ss_pred HHHHhhcccchHHHHHHHHHHHHHHH
Confidence 334333 4455567777777777764
No 39
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=38.58 E-value=1.2e+02 Score=26.87 Aligned_cols=60 Identities=20% Similarity=0.358 Sum_probs=38.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhhcc
Q psy3973 43 TISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTV 102 (285)
Q Consensus 43 ~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLGlf~ 102 (285)
+.++++..+++|-.++...++.+..++.-+.+-..+.......-+.+|-++.+.-+.|..
T Consensus 30 ~~~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL~~fgIsl~af~IaGGiiL~~ia~~ml~ 89 (203)
T PF01914_consen 30 GMSPKERRRIARRASIIAFIILLIFAFFGQLILNFFGISLPAFRIAGGIILFLIALEMLF 89 (203)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 678888999999888888888777777766543444444444444555555444444433
No 40
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.90 E-value=29 Score=26.17 Aligned_cols=22 Identities=23% Similarity=0.461 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcc
Q psy3973 193 MYYIVLGFCVTMLVGAIVSRFF 214 (285)
Q Consensus 193 l~ys~iG~~itivVG~lvS~lt 214 (285)
+|.++++.++++++|++..++.
T Consensus 3 l~lail~ivl~ll~G~~~G~fi 24 (71)
T COG3763 3 LWLAILLIVLALLAGLIGGFFI 24 (71)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5777788899999999888775
No 41
>PRK11375 allantoin permease; Provisional
Probab=35.53 E-value=75 Score=31.95 Aligned_cols=49 Identities=24% Similarity=0.236 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHhhhhhHHHHHhhhhcc-cc
Q psy3973 56 LTFIYGLVCLCIAYLAKY-LGSVLQASLTIFGVVGGPVLGVFTLGMTV-TF 104 (285)
Q Consensus 56 ~~li~Gvl~i~~A~~~~~-~g~vl~~~~si~g~~~GpllgvFlLGlf~-kr 104 (285)
.+++.|++++++++.... ..+-+.-+++..|.+.||+.|+++.-.|. ||
T Consensus 350 ~~~i~~iig~~~~pw~~~~~~~~f~~FL~~lg~~l~Pi~gImi~DY~i~rr 400 (484)
T PRK11375 350 GVLIASIISLLICPWKLMENQDSIYLFLDIIGGMLGPVIGVMMAHYFVVMR 400 (484)
T ss_pred HHHHHHHHHHHhccHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhheeEec
Confidence 555666666666654321 12336667777888899999999999874 44
No 42
>COG5346 Predicted membrane protein [Function unknown]
Probab=35.03 E-value=77 Score=26.51 Aligned_cols=22 Identities=18% Similarity=0.424 Sum_probs=16.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHH
Q psy3973 43 TISDRRGGQLSKVLTFIYGLVC 64 (285)
Q Consensus 43 ~~se~~~l~vsRi~~li~Gvl~ 64 (285)
+.++..+-++.|++.+++|+..
T Consensus 80 q~r~~~~~~~tril~liFgi~L 101 (136)
T COG5346 80 QRRGQLYAKLTRILLLIFGIFL 101 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567889999999999865
No 43
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=34.92 E-value=1.5e+02 Score=26.28 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=33.4
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973 43 TISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL 93 (285)
Q Consensus 43 ~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll 93 (285)
+.++++.-++.+-.++...++.+..++.-+.+-..+.......-+.+|-++
T Consensus 33 ~~~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL~~fgIsl~afrIaGGiiL 83 (201)
T TIGR00427 33 YYTAAERNKIAKKANISSFIILLIFLVFGDTILKLFGISIDAFRIAGGILL 83 (201)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 678888999999888888888877777655443344444444444444444
No 44
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=34.61 E-value=2e+02 Score=31.50 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHhhhcc
Q psy3973 198 LGFCVTMLVGAIVSRFF 214 (285)
Q Consensus 198 iG~~itivVG~lvS~lt 214 (285)
+.|.+.+++|+++|-++
T Consensus 476 vTf~vml~vai~t~~Lt 492 (890)
T COG2205 476 VTFAVMLAVALLTGNLT 492 (890)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56777777777777776
No 45
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=34.15 E-value=30 Score=25.61 Aligned_cols=14 Identities=36% Similarity=0.370 Sum_probs=6.5
Q ss_pred hHHHHHHHHHHHHH
Q psy3973 109 GALAGIVSGLLFCS 122 (285)
Q Consensus 109 GAl~G~i~G~lv~~ 122 (285)
|.++|.++|.++.+
T Consensus 4 g~l~Ga~~Ga~~gl 17 (74)
T PF12732_consen 4 GFLAGAAAGAAAGL 17 (74)
T ss_pred HHHHHHHHHHHHHH
Confidence 44445555544433
No 46
>PRK15083 PTS system mannitol-specific transporter subunit IICBA; Provisional
Probab=33.73 E-value=1.2e+02 Score=31.69 Aligned_cols=77 Identities=10% Similarity=0.086 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhcc--CCCCCCC-CcccHHHHHHHhhc-CCCCCCCccccccccccCCCCCCCcceeccCCC
Q psy3973 193 MYYIVLGFCVTMLVGAIVSRFF--DTPSYDV-NLLTPWVAARARRK-HNGPYKEPEGAVGENAANDKREPGMSCCGVGRQ 268 (285)
Q Consensus 193 l~ys~iG~~itivVG~lvS~lt--~~~~~d~-~Ll~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (285)
+|..++|.+++++++.+++++. ..+..++ +|=+- -++...-+ +.++.++.+....+ ..+++.+.=+-.|+-|++
T Consensus 313 ~~~~~i~~~v~~~v~~v~t~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kkilvVC~sG~G 390 (639)
T PRK15083 313 YFANIASVAAAMAVSFVVSAILLKTSKVKEEDDLEAA-TRRMQDMKAESKGASPLAAGDVT-NDLSHVRKIIVACDAGMG 390 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH-HHHHHHhhhcccccccccccccc-cchhccCEEEEECCCCcc
Confidence 5667778888888888888777 2222222 32221 22222111 22222222111111 223334444678999998
Q ss_pred chh
Q psy3973 269 TET 271 (285)
Q Consensus 269 ~~~ 271 (285)
+-+
T Consensus 391 sS~ 393 (639)
T PRK15083 391 SSA 393 (639)
T ss_pred HHH
Confidence 864
No 47
>PRK01844 hypothetical protein; Provisional
Probab=31.19 E-value=37 Score=25.70 Aligned_cols=34 Identities=18% Similarity=0.355 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhcc----------CCCCCCCCcccH
Q psy3973 193 MYYIVLGFCVTMLVGAIVSRFF----------DTPSYDVNLLTP 226 (285)
Q Consensus 193 l~ys~iG~~itivVG~lvS~lt----------~~~~~d~~Ll~p 226 (285)
+|..++-.++++++|++..++. +.+++|++.+.-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark~~~k~lk~NPpine~mir~ 46 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARKYMMNYLQKNPPINEQMLKM 46 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Confidence 4555555566777777766664 445666665433
No 48
>PRK11111 hypothetical protein; Provisional
Probab=30.93 E-value=1.9e+02 Score=25.98 Aligned_cols=32 Identities=6% Similarity=0.193 Sum_probs=24.5
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy3973 43 TISDRRGGQLSKVLTFIYGLVCLCIAYLAKYL 74 (285)
Q Consensus 43 ~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~ 74 (285)
+.++++.-+++|..++...++.+..++.-+.+
T Consensus 36 ~~s~~~r~~ia~~a~l~a~~ill~f~~~G~~i 67 (214)
T PRK11111 36 HQTAAERNKTNLTANLSVAIILLISLFLGDFI 67 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888899988888887777666665543
No 49
>PRK10263 DNA translocase FtsK; Provisional
Probab=29.06 E-value=2.6e+02 Score=32.18 Aligned_cols=34 Identities=12% Similarity=0.145 Sum_probs=22.5
Q ss_pred hhhhHHHHHhhhhccccCChhhHHHHHHHHHHHH
Q psy3973 88 VGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFC 121 (285)
Q Consensus 88 ~~GpllgvFlLGlf~kran~~GAl~G~i~G~lv~ 121 (285)
.+|+++|.++.+++.+..+..|+.+=+++.+++.
T Consensus 141 ~gGGIIG~lLs~lL~~LfG~vGa~LILLlllLIG 174 (1355)
T PRK10263 141 ASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAG 174 (1355)
T ss_pred cccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3688888888777777777777665554444443
No 50
>PRK11677 hypothetical protein; Provisional
Probab=28.94 E-value=52 Score=27.74 Aligned_cols=21 Identities=33% Similarity=0.722 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q psy3973 194 YYIVLGFCVTMLVGAIVSRFF 214 (285)
Q Consensus 194 ~ys~iG~~itivVG~lvS~lt 214 (285)
-++++|+++.+++|++++.++
T Consensus 4 ~~a~i~livG~iiG~~~~R~~ 24 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRFG 24 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 356799999999999999987
No 51
>PF10225 DUF2215: Uncharacterized conserved protein (DUF2215); InterPro: IPR024233 This entry represents a domain that is found in a number of different proteins, including a family of transmembrane proteins.
Probab=28.49 E-value=1.6e+02 Score=27.06 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhhccc
Q psy3973 50 GQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVT 103 (285)
Q Consensus 50 l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLGlf~k 103 (285)
...-|++.++.|++....|..+++.-..+=.+-...|++..-++-+|.+.=+.|
T Consensus 9 ~d~~r~~~~v~Gi~Lf~~A~~LS~s~~FyY~sg~~lGv~~s~li~~~~~~k~lP 62 (249)
T PF10225_consen 9 FDFWRVAQFVLGIVLFFLAPSLSRSVLFYYSSGISLGVLASLLILLFQLSKLLP 62 (249)
T ss_pred EcHHHHHHHHHHHHHHHHhHHhccChhHHHhhhHHHHHHHHHHHHHHHHHHHcc
Confidence 556788899999988888876654211111111123455555555555555555
No 52
>PRK00523 hypothetical protein; Provisional
Probab=28.16 E-value=46 Score=25.20 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhcc----------CCCCCCCCcccH
Q psy3973 193 MYYIVLGFCVTMLVGAIVSRFF----------DTPSYDVNLLTP 226 (285)
Q Consensus 193 l~ys~iG~~itivVG~lvS~lt----------~~~~~d~~Ll~p 226 (285)
.|..++-.++++++|++..++. +.+++|++.+.-
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffiark~~~k~l~~NPpine~mir~ 47 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVSKKMFKKQIRENPPITENMIRA 47 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCHHHHHH
Confidence 4555555666677777776664 445666665433
No 53
>PLN03140 ABC transporter G family member; Provisional
Probab=27.33 E-value=2.1e+02 Score=33.14 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=24.1
Q ss_pred HhhhhhHHHHHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCC
Q psy3973 86 GVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPK 130 (285)
Q Consensus 86 g~~~GpllgvFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~ 130 (285)
..+.+-.+|.++.+ +.+.-..+..++++++.+|..++...
T Consensus 1337 ~~~~~~~~g~~~~a-----~~p~~~~A~~~~~~~~~~~~lf~Gf~ 1376 (1470)
T PLN03140 1337 SFLYFTYYGMMTVS-----LTPNQQVAAIFAAAFYGLFNLFSGFF 1376 (1470)
T ss_pred HHHHHHHHHHHHHH-----HCCcHHHHHHHHHHHHHHHHHHeeec
Confidence 34445555555544 33345566777777777788776654
No 54
>TIGR01185 devC DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids.
Probab=26.81 E-value=5.9e+02 Score=24.60 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--CCCCCCC
Q psy3973 194 YYIVLGFCVTMLVGAIVSRFF--DTPSYDV 221 (285)
Q Consensus 194 ~ys~iG~~itivVG~lvS~lt--~~~~~d~ 221 (285)
+..++++++++++|++.+++. +-.++||
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~dP 376 (380)
T TIGR01185 347 DRAITVLILTMIMCFVSGSIAVRKLRSADP 376 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 345567778888888888887 3355555
No 55
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=26.24 E-value=2.3e+02 Score=29.33 Aligned_cols=22 Identities=18% Similarity=0.325 Sum_probs=16.7
Q ss_pred chhhccccchhHHHHHHHHHHH
Q psy3973 183 QYFYLYRISYMYYIVLGFCVTM 204 (285)
Q Consensus 183 ~~~~ly~ISyl~ys~iG~~iti 204 (285)
...+++.+|+++|+.-+.++.-
T Consensus 530 ~~~W~~~isp~~ya~~al~~ne 551 (617)
T TIGR00955 530 YFKWLSYLSWFRYGNEGLLINQ 551 (617)
T ss_pred HHHHHHHcCHHHHHHHHHHHHH
Confidence 3456778999999998876664
No 56
>PRK11089 PTS system glucose-specific transporter subunits IIBC; Provisional
Probab=26.09 E-value=3e+02 Score=28.00 Aligned_cols=17 Identities=18% Similarity=0.180 Sum_probs=12.3
Q ss_pred hhhHHHHHhhhhccccC
Q psy3973 89 GGPVLGVFTLGMTVTFA 105 (285)
Q Consensus 89 ~GpllgvFlLGlf~kra 105 (285)
.||.+|.|+.|.++|-.
T Consensus 189 ~g~~~g~~iyG~l~rlL 205 (477)
T PRK11089 189 QNPVVAFGIYGFVERSL 205 (477)
T ss_pred cCchHHHHHHHHHHHHH
Confidence 36777888888877643
No 57
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=26.07 E-value=3.6e+02 Score=26.84 Aligned_cols=42 Identities=5% Similarity=0.044 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhh
Q psy3973 58 FIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLG 99 (285)
Q Consensus 58 li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLG 99 (285)
.+|+++.+.+.+-..--..+..-..-+.|-+.|+.+|+.+.-
T Consensus 41 ~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~ 82 (406)
T PF11744_consen 41 AMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSW 82 (406)
T ss_pred chHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455655555444332213556666666666667766655533
No 58
>PRK10110 bifunctional PTS system maltose and glucose-specific transporter subunits IICB; Provisional
Probab=25.08 E-value=3.2e+02 Score=28.09 Aligned_cols=50 Identities=12% Similarity=0.189 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhhhHHHHHhhhhccc
Q psy3973 54 KVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGV--VGGPVLGVFTLGMTVT 103 (285)
Q Consensus 54 Ri~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~--~~GpllgvFlLGlf~k 103 (285)
|..-++..++++.+++++..++.+.+......+. -..+.+|.|+.|.++|
T Consensus 181 rfvPiit~lv~~~l~~i~~~iwP~~~~~~~~~~~~~~~~g~ig~~i~G~l~r 232 (530)
T PRK10110 181 RFVPIISSLVMGLVGLVIPLVWPIFAMGISGLGHMINSAGDFGPMLFGTGER 232 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4445555555555555553333322222211111 1123456666665555
No 59
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=25.01 E-value=1.7e+02 Score=28.70 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhhhhHHHHHhhhhcc
Q psy3973 56 LTFIYGLVCLCIAYLAK-YLGSVLQASLTIFGVVGGPVLGVFTLGMTV 102 (285)
Q Consensus 56 ~~li~Gvl~i~~A~~~~-~~g~vl~~~~si~g~~~GpllgvFlLGlf~ 102 (285)
.+++.++++++.++... +..+.++-++.+.|++.+|+.|+.+.-.|.
T Consensus 336 ~~~i~~ii~~~~~~~~~~~~~~~~~~FL~~lg~~~~P~~gI~l~Dy~~ 383 (442)
T TIGR00800 336 GSLICAIIALLICPWNLYNSSSKFTTFLSSIGGFLSPIAGVMIADYFV 383 (442)
T ss_pred HHHHHHHHHHHhccHHHHhchHHHHHHHHHHHHHHHHHHHHHHhheeE
Confidence 44455565655554432 234457778888899999999999998876
No 60
>TIGR01998 PTS-II-BC-nag PTS system, N-acetylglucosamine-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for N-acetylglucosamine transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, N-acetylglucosamine-specific IIABC component". This family is most closely related to the glucose-specific PTS enzymes.
Probab=24.94 E-value=2.9e+02 Score=27.90 Aligned_cols=79 Identities=14% Similarity=0.061 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhhcccCCCCCCCCChhhHHH-HHHHHHHHHHHHHHHHHHHH----hhHHHHHHHHHHHHHhhhhhHHHH
Q psy3973 21 ELETAELSLSHCQPLYSYSTNRTISDRRGGQ-LSKVLTFIYGLVCLCIAYLA----KYLGSVLQASLTIFGVVGGPVLGV 95 (285)
Q Consensus 21 ns~Sav~~~D~yk~~~~~~~~~~~se~~~l~-vsRi~~li~Gvl~i~~A~~~----~~~g~vl~~~~si~g~~~Gpllgv 95 (285)
-..++.++--+|+++.+ +++.|.-... =.|..-++..++++.+++++ ..++..+........ ..+.+|.
T Consensus 118 gIi~g~i~a~iy~k~~~----iklP~~l~~f~G~rfvPiit~li~~~l~~~~~~iwp~i~~~I~~~~~~i~--~~g~~g~ 191 (476)
T TIGR01998 118 GILAGLIAGALYNRFSE----IKLPEALSFFSGKRLVPIMAGFVGLVLAALLGYVWPTLYGGIVAFGESIS--GLGALGA 191 (476)
T ss_pred HHHHHHHHHHHHHHHhe----eECcchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcchHHH
Confidence 34456666667666654 2333332221 12333333344444444433 223222222221111 2456888
Q ss_pred HhhhhccccC
Q psy3973 96 FTLGMTVTFA 105 (285)
Q Consensus 96 FlLGlf~kra 105 (285)
|+.|.++|-.
T Consensus 192 ~iyG~l~rlL 201 (476)
T TIGR01998 192 GIYGFLNRLL 201 (476)
T ss_pred HHHHHHHHHH
Confidence 8888887754
No 61
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.86 E-value=66 Score=27.12 Aligned_cols=21 Identities=29% Similarity=0.773 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q psy3973 194 YYIVLGFCVTMLVGAIVSRFF 214 (285)
Q Consensus 194 ~ys~iG~~itivVG~lvS~lt 214 (285)
-|+.||+++.++||+++-.++
T Consensus 9 ~~a~igLvvGi~IG~li~Rlt 29 (138)
T COG3105 9 EYALIGLVVGIIIGALIARLT 29 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 468899999999999999988
No 62
>TIGR02002 PTS-II-BC-glcB PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998).
Probab=24.11 E-value=3.4e+02 Score=27.69 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=11.4
Q ss_pred hhHHHHHhhhhccccC
Q psy3973 90 GPVLGVFTLGMTVTFA 105 (285)
Q Consensus 90 GpllgvFlLGlf~kra 105 (285)
+|.+|.|+.|.++|-.
T Consensus 207 ~~~~g~~i~G~l~r~L 222 (502)
T TIGR02002 207 NPVVAFFIFGFIERSL 222 (502)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 5667888888777644
No 63
>COG3859 Predicted membrane protein [Function unknown]
Probab=23.49 E-value=5.2e+02 Score=22.89 Aligned_cols=42 Identities=19% Similarity=0.301 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHh
Q psy3973 46 DRRGGQLSKVLTFIYGLVCLCIAY--LAKYLGSVLQASLTIFGV 87 (285)
Q Consensus 46 e~~~l~vsRi~~li~Gvl~i~~A~--~~~~~g~vl~~~~si~g~ 87 (285)
=|.-.+.+-...++||++.+...- +..-..-++|+......+
T Consensus 49 fRrG~kaG~~tGLl~Gll~~i~G~~Y~lhpsQ~~ldYilaf~~i 92 (185)
T COG3859 49 FRRGLKAGLLTGLLWGLLHLILGKAYILHPSQVLLDYILAFMAI 92 (185)
T ss_pred HHhhhHHHHHHHHHHHHHHHHhCchhhccHHHHHHHhhHHHHHH
Confidence 344566777788999999888773 333335677777766544
No 64
>TIGR03750 conj_TIGR03750 conjugative transfer region protein, TIGR03750 family. Members of this protein family are found occasionally on plasmids. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=22.86 E-value=3.6e+02 Score=22.00 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=16.7
Q ss_pred HhhhhhHHHHHhhhhcc---ccCChhhHHHHHHH
Q psy3973 86 GVVGGPVLGVFTLGMTV---TFANQQGALAGIVS 116 (285)
Q Consensus 86 g~~~GpllgvFlLGlf~---kran~~GAl~G~i~ 116 (285)
++.-||++++|+-|-+. ||..+.+-++--+-
T Consensus 54 ~~lig~~l~v~~gg~~l~rlKRGrPe~yl~r~l~ 87 (111)
T TIGR03750 54 GALLGPILVVLIGGKLLARLKRGKPEGYLYRKLE 87 (111)
T ss_pred HHHHHHHHHHHHhHHHHHHHHcCCCchHHHHHHH
Confidence 44556666666666543 45555555544433
No 65
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=22.84 E-value=2.7e+02 Score=28.34 Aligned_cols=41 Identities=27% Similarity=0.500 Sum_probs=24.5
Q ss_pred HHHHHHHHhhhhhHHHHHhh------------hhccccCChhhHHHHHHHHHH
Q psy3973 79 QASLTIFGVVGGPVLGVFTL------------GMTVTFANQQGALAGIVSGLL 119 (285)
Q Consensus 79 ~~~~si~g~~~GpllgvFlL------------Glf~kran~~GAl~G~i~G~l 119 (285)
-+...+.|+.+||+.|...- |.|.|.-+=.+++.|++.|++
T Consensus 99 fIpi~l~G~LFGP~~G~l~g~lsDlLg~if~~G~fFpGFTLsA~L~GlIyGl~ 151 (477)
T PRK12821 99 LILVKISGLLFGPIIGIFSAATIDFLTVIFSGGVFNYGYVLGAILTGMIAGIL 151 (477)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHH
Confidence 34567778888888877542 333333344455666666654
No 66
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=22.75 E-value=6.1e+02 Score=24.06 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=55.1
Q ss_pred HHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh----h-----------HHHHHHHHHHH---
Q psy3973 23 ETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAK----Y-----------LGSVLQASLTI--- 84 (285)
Q Consensus 23 ~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~----~-----------~g~vl~~~~si--- 84 (285)
.++.+..-++||+++ +.+.++ +...+++|+..-+|=+.+. + .|.+.-...+-
T Consensus 50 ~aaLIll~l~RPwr~-----r~~~~~-----~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~GPL~vA~~~sRr~ 119 (292)
T COG5006 50 IAALILLALFRPWRR-----RLSKPQ-----RLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFTGPLAVALLSSRRL 119 (292)
T ss_pred HHHHHHHHHhhHHHh-----ccChhh-----hHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccHHHHHHHhccch
Confidence 467777788999876 555554 3445566665544433321 1 12111111100
Q ss_pred --HHhhhhhHHHHHhhhhcc---ccCChhhHHHHHHHHHHHHHHHhhCCCC
Q psy3973 85 --FGVVGGPVLGVFTLGMTV---TFANQQGALAGIVSGLLFCSLVGFGGPK 130 (285)
Q Consensus 85 --~g~~~GpllgvFlLGlf~---kran~~GAl~G~i~G~lv~~wv~iga~~ 130 (285)
+.-..=.++|+-++...- ...++.|+.+++.+|.....|+..|...
T Consensus 120 ~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~ 170 (292)
T COG5006 120 RDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRA 170 (292)
T ss_pred hhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchh
Confidence 001122334444444444 4568889999999999999999887654
No 67
>COG4591 LolE ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]
Probab=22.48 E-value=7.7e+02 Score=24.45 Aligned_cols=39 Identities=26% Similarity=0.558 Sum_probs=20.9
Q ss_pred HHHhhhhhHHHHHhh-hhccccCChhhHHHHHHHHHHHHHHHh
Q psy3973 84 IFGVVGGPVLGVFTL-GMTVTFANQQGALAGIVSGLLFCSLVG 125 (285)
Q Consensus 84 i~g~~~GpllgvFlL-Glf~kran~~GAl~G~i~G~lv~~wv~ 125 (285)
.+|..-+-+.-+|++ |++. .-.|++.|.+.|.+++.++-
T Consensus 307 tmGa~~~~I~~iFl~~G~~i---G~iG~llG~iLG~~~~~~i~ 346 (408)
T COG4591 307 AMGASPSHIMRIFLLQGLII---GLIGALLGVILGVLLALNLN 346 (408)
T ss_pred HcCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 345555555555553 2221 11366777777777666653
No 68
>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids. They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.
Probab=22.38 E-value=82 Score=28.92 Aligned_cols=30 Identities=20% Similarity=0.559 Sum_probs=24.7
Q ss_pred hccccc---hhHHHHHHHHHHHHHHHHhhhccC
Q psy3973 186 YLYRIS---YMYYIVLGFCVTMLVGAIVSRFFD 215 (285)
Q Consensus 186 ~ly~IS---yl~ys~iG~~itivVG~lvS~lt~ 215 (285)
.+|+++ -+.|+++..+++++.|+++|.+++
T Consensus 202 ~i~~~A~~~~~lYGl~av~iAi~~Gw~a~~iFr 234 (236)
T PF09608_consen 202 WIYNLAHEQPLLYGLLAVLIAIFAGWLASAIFR 234 (236)
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcc
Confidence 444444 488999999999999999999983
No 69
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=21.91 E-value=3.5e+02 Score=26.32 Aligned_cols=65 Identities=6% Similarity=-0.053 Sum_probs=45.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhhccccCCh
Q psy3973 43 TISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQ 107 (285)
Q Consensus 43 ~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLGlf~kran~ 107 (285)
-++|+|.+..--+.-..=|-+.+..+++-.+++++.-...+..|++.+|.+-++.++.++.|...
T Consensus 238 Wlt~~eF~~~~alaq~~PGP~~~~a~~iG~~~~G~~Ga~~A~~g~~lP~~lli~~l~~~~~~~~~ 302 (368)
T TIGR00937 238 WLTAGQFLDGIALAQITPGPLFITATFIGYLVAGFPGAIAATVAIFLPSFLLVLGVLPYFKKLGK 302 (368)
T ss_pred CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 57888876665555555555554223333345778888888889999999999999999976643
No 70
>TIGR00852 pts-Glc PTS system, maltose and glucose-specific subfamily, IIC component. permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the E. coli PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-cellobiose (ASC), trehalose (Tre), putative glucoside (Glv) and sucrose (Scr) permeases of E. coli. Most, but not all Scr permeases of other bacteria also lack a IIA domain. This model is specific for the IIC domain of the Glc family PTS transporters.
Probab=21.83 E-value=3.4e+02 Score=25.21 Aligned_cols=76 Identities=17% Similarity=0.200 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHH-HHHHHHHHHHHHhhH-HH-HHHHHHHHHHhhhhhHHHHHhhhh
Q psy3973 24 TAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFI-YGLVCLCIAYLAKYL-GS-VLQASLTIFGVVGGPVLGVFTLGM 100 (285)
Q Consensus 24 Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li-~Gvl~i~~A~~~~~~-g~-vl~~~~si~g~~~GpllgvFlLGl 100 (285)
.+++..-+++|+.+ +.+.|--...+.+.++++ .+.+++.+...+... +. .+........ -.++.+|.|++|.
T Consensus 72 ~~~~~~~~~~k~~~----~~lP~~l~~~~~p~~~~li~~~~~~~v~~p~~~~~~~~~i~~~~~~i~-~~~~~~g~~i~g~ 146 (289)
T TIGR00852 72 VGAIALALHERFLD----KKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPVGISALLHWLY-SAGGALGGAIFGF 146 (289)
T ss_pred HHHHHHHHHHHHhh----hhCchhhhhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HcchHHHHHHHHH
Confidence 45555555666655 345454444444444444 444444333333322 22 1111111111 1344677788887
Q ss_pred cccc
Q psy3973 101 TVTF 104 (285)
Q Consensus 101 f~kr 104 (285)
+++-
T Consensus 147 l~~l 150 (289)
T TIGR00852 147 LYRL 150 (289)
T ss_pred HHHH
Confidence 7763
No 71
>TIGR02357 thia_yuaJ probable proton-coupled thiamine transporter YuaJ. Members of this protein family have been assigned as thiamine transporters by a phylogenomic analysis of families of genes regulated by the THI element, a broadly conserved RNA secondary structure element through which thiamine pyrophosphate (TPP) levels can regulate transcription of many genes related to thiamine transport, salvage, and de novo biosynthesis. Species with this protein always lack the ThiBPQ ABC transporter. In some species (e.g. Steptococcus mutans and Streptoccus pyogenes), yuaJ is the only THI-regulated gene. Evidence from Bacillus cereus indicates thiamine uptake is coupled to proton translocation.
Probab=21.34 E-value=4e+02 Score=23.34 Aligned_cols=8 Identities=13% Similarity=-0.060 Sum_probs=4.4
Q ss_pred hhhccccC
Q psy3973 98 LGMTVTFA 105 (285)
Q Consensus 98 LGlf~kra 105 (285)
.|+|.|+.
T Consensus 90 aGl~~~~~ 97 (183)
T TIGR02357 90 AGVFRIKK 97 (183)
T ss_pred HHHHHHHH
Confidence 56666544
No 72
>TIGR00937 2A51 chromate transporter, chromate ion transporter (CHR) family. Cutoffs for this model have now been lowered, compared to a previous version, giving the model a scope more similar to that of Pfam model pfam02417. Members of the original, more narrowly defined family score above 500.00 bits.
Probab=21.15 E-value=2.5e+02 Score=27.29 Aligned_cols=65 Identities=18% Similarity=0.165 Sum_probs=49.1
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhhhhhHHHHHhhhhccccCC
Q psy3973 42 RTISDRRGGQLSKVLTFIYGLVCLCIAYLAK-YLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFAN 106 (285)
Q Consensus 42 ~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~-~~g~vl~~~~si~g~~~GpllgvFlLGlf~kran 106 (285)
+-+||+|....--+.-.+=|-.++-+|.++. +.++..-...+..+.+.+|.+-+++++.++.+..
T Consensus 28 ~Wlt~~ef~~~~alaq~~PGP~~~n~a~~iG~~~~G~~Gal~a~~~~~lP~~ili~~l~~~~~~~~ 93 (368)
T TIGR00937 28 QWMSEASYNDLVALAQFLPGPASSQVAIYLGYLLGGIVGAILAGLAFTLPSFLLVVALAWAYVHYG 93 (368)
T ss_pred CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3689999888777776666766665665443 4467777888888899999999999999886653
No 73
>PF07694 5TM-5TMR_LYT: 5TMR of 5TMR-LYT; InterPro: IPR011620 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the transmembrane region of the 5TM-Lyt (5TM Receptors of the LytS-YhcK type) histidine kinase []. The two-component regulatory system LytS/LytT probably regulates genes involved in cell wall metabolism. ; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0007047 cellular cell wall organization, 0016021 integral to membrane
Probab=20.52 E-value=1.4e+02 Score=24.89 Aligned_cols=25 Identities=20% Similarity=0.436 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhhHHHHHhhhh
Q psy3973 76 SVLQASLTIFGVVGGPVLGVFTLGM 100 (285)
Q Consensus 76 ~vl~~~~si~g~~~GpllgvFlLGl 100 (285)
++-.....++++.+||..|+....+
T Consensus 45 DlR~i~iil~~lygG~~~~li~~~i 69 (169)
T PF07694_consen 45 DLRFIPIILAGLYGGPISGLIAGLI 69 (169)
T ss_pred ehHHHHHHHHHHHcChHHHHHHHHH
Confidence 5667778888899999888766544
No 74
>TIGR02004 PTS-IIBC-malX PTS system, maltose and glucose-specific IIBC component. This model represents a family of PTS enzyme II fused B and C components including and most closely related to the MalX maltose and glucose-specific transporter of E. coli. A pair of paralogous genes from E. coli strain CFT073 score between trusted and noise and may have diverged sufficiently to have an altered substrate specificity.
Probab=20.50 E-value=4.2e+02 Score=27.15 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy3973 54 KVLTFIYGLVCLCIAYLAK 72 (285)
Q Consensus 54 Ri~~li~Gvl~i~~A~~~~ 72 (285)
|..-++..++++.+++.+.
T Consensus 172 rfVPiit~li~~~l~~~~p 190 (517)
T TIGR02004 172 RFVPIISALVLAVVGLVIP 190 (517)
T ss_pred cchHHHHHHHHHHHHHHHH
Confidence 4455555555555555553
No 75
>PF09955 DUF2189: Predicted integral membrane protein (DUF2189); InterPro: IPR018692 This family includes several hypothetical prokaryotic proteins. Some are described as putative cytochrome c oxidases.
Probab=20.09 E-value=4.9e+02 Score=21.31 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=29.9
Q ss_pred HhhhhhHHHHHhhhhccccCChhhHHHHHHHHHHHHHH
Q psy3973 86 GVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSL 123 (285)
Q Consensus 86 g~~~GpllgvFlLGlf~kran~~GAl~G~i~G~lv~~w 123 (285)
|....|-+.-|+.+.|.+..|..=..+|.++|.++...
T Consensus 77 G~~~~~~~~~~~~~~~~t~~g~~~li~~~~vG~v~A~i 114 (128)
T PF09955_consen 77 GPLPIPDLSEFLAGVFFTPRGWGFLIVGTLVGGVFAAI 114 (128)
T ss_pred CCCCCCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence 44456677889999999999998888888888777543
No 76
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=20.08 E-value=4e+02 Score=22.01 Aligned_cols=50 Identities=16% Similarity=0.042 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhhcc-ccCChhhHHH
Q psy3973 47 RRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTV-TFANQQGALA 112 (285)
Q Consensus 47 ~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLGlf~-kran~~GAl~ 112 (285)
+..+|.....+++..++++..... .+...++..|.+|.+. ||.|+.+.+.
T Consensus 3 ~~~~R~~a~~~~~~~~~~l~~~~~----------------~ll~~l~~~f~~~~~~g~~~sP~~~~~ 53 (131)
T PF14340_consen 3 ERAVRFNAGLVVLLLALALVTGQP----------------WLLAILAVDFALRAFFGPRYSPFGLLA 53 (131)
T ss_pred cchhhHHHHHHHHHHHHHHHHhhH----------------HHHHHHHHHHHHHHHhCcCcChHHHHH
Confidence 456777777777777665544310 1234456678888887 8888877554
No 77
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=20.07 E-value=7.2e+02 Score=25.04 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHhhhhccccCCh
Q psy3973 75 GSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQ 107 (285)
Q Consensus 75 g~vl~~~~si~g~~~GpllgvFlLGlf~kran~ 107 (285)
..+++++.=+....+++...+-+++++-|+.+.
T Consensus 334 ~~II~~s~PiL~~iYP~~IvLill~l~~~~~~~ 366 (439)
T PRK15433 334 SQLIQISVPVLTAIYPPCIALVVLSFTRSWWHN 366 (439)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC
Confidence 578888888899999999999999999876654
Done!