Query psy3973
Match_columns 285
No_of_seqs 207 out of 1641
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 22:03:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3973.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3973hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dh4_A Sodium/glucose cotransp 99.8 7.3E-19 2.5E-23 174.3 15.3 140 14-216 335-474 (530)
2 2xq2_A Sodium/glucose cotransp 99.7 4.5E-17 1.5E-21 163.5 14.7 138 15-215 365-502 (593)
3 2jln_A MHP1; hydantoin, transp 84.1 4.1 0.00014 39.4 9.3 46 55-102 338-383 (501)
4 3rlb_A THIT; S-component, ECF 47.5 1.2E+02 0.004 25.7 9.4 26 97-122 104-132 (192)
5 3p5n_A RIBU, riboflavin uptake 19.9 2.8E+02 0.0097 22.8 7.0 28 97-124 98-126 (189)
6 1qle_D Cytochrome AA3, ccytoch 13.9 1.6E+02 0.0055 19.0 3.1 21 50-70 21-41 (43)
7 1m56_D Cytochrome C oxidase; m 13.9 1.9E+02 0.0064 19.4 3.5 21 50-70 29-49 (51)
8 2k1k_A Ephrin type-A receptor 12.0 1.6E+02 0.0053 18.4 2.5 14 107-120 9-22 (38)
9 3mp7_B Preprotein translocase 11.1 4.1E+02 0.014 18.3 5.5 22 43-64 24-45 (61)
10 3iyz_A Aquaporin-4; water tran 11.1 2E+02 0.0069 26.6 4.0 24 191-214 245-269 (340)
No 1
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=99.79 E-value=7.3e-19 Score=174.35 Aligned_cols=140 Identities=19% Similarity=0.227 Sum_probs=120.2
Q ss_pred cchhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHH
Q psy3973 14 FSKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVL 93 (285)
Q Consensus 14 ~~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpll 93 (285)
+|.|+..|+.|+++++|+||++.+ |+++|||.++++|+.+++++++++++|+.....+.++++.+.+.|++++|++
T Consensus 335 ST~ss~l~s~st~~~~Diy~~~~~----~~~s~~~~~~v~R~~~v~~~i~a~~~a~~~~~~~~~~~~~~~~~g~~~~~~~ 410 (530)
T 3dh4_A 335 SSLASMLNSTATIFTMDIYKEYIS----PDSGDHKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGIL 410 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCC----SCSCSSHHHHHHHHHHHHHHHHHHHHGGGGGGCSCHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHhHHHHHhHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHH
Confidence 344555556679999999999866 5899999999999999999999999997766667788889999999999999
Q ss_pred HHHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCcccccccccc
Q psy3973 94 GVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIR 173 (285)
Q Consensus 94 gvFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (285)
++|++|+||||+|++||++|+++|+++.++..+..
T Consensus 411 ~~~llgl~wkr~~~~gA~~g~i~G~~~~~~~~~~~--------------------------------------------- 445 (530)
T 3dh4_A 411 AVFLLGLFWKKTTSKGAIIGVVASIPFALFLKFMP--------------------------------------------- 445 (530)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHTSS---------------------------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHc---------------------------------------------
Confidence 99999999999999999999999999977653210
Q ss_pred cccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhccCC
Q psy3973 174 YTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDT 216 (285)
Q Consensus 174 ~~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt~~ 216 (285)
..++++|...+++++++++.+++|+++++
T Consensus 446 --------------~~~~~~~~~~~~~~~~~i~~v~vSl~t~~ 474 (530)
T 3dh4_A 446 --------------LSMPFMDQMLYTLLFTMVVIAFTSLSTSI 474 (530)
T ss_dssp --------------SCCCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred --------------CCccHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 02457899999999999999999999933
No 2
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=99.72 E-value=4.5e-17 Score=163.48 Aligned_cols=138 Identities=19% Similarity=0.239 Sum_probs=116.8
Q ss_pred chhHHHHHHHHHHHHHhhhcccCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHH
Q psy3973 15 SKSADQELETAELSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLG 94 (285)
Q Consensus 15 ~sS~dsns~Sav~~~D~yk~~~~~~~~~~~se~~~l~vsRi~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~Gpllg 94 (285)
|.|+..|+.|+++++|+|+++.+ |+++||+.++++|+.++++|++++++|+.....++++++.+.+.|++++|+++
T Consensus 365 T~~s~l~a~st~~~~Diy~~~~~----~~~s~~~~l~v~Ri~~v~~~~ia~~~a~~~~~~~~i~~~~~~~~g~~~~~~~~ 440 (593)
T 2xq2_A 365 SLASMLNSTATIFTMDIYKEYIS----PDSGDHKLVNVGRTAAVVALIIAALIAPMLGGIGQCFQYIQEYTGLVSPGILA 440 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTC----SCCCHHHHHHHHHHHHHHHHHHHHHHGGGGGGCBCHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHhhHHHH
Confidence 33444555679999999999876 58999999999999999999999999987665567888888888999999999
Q ss_pred HHhhhhccccCChhhHHHHHHHHHHHHHHHhhCCCCCCCCCCCCccCCCCCCCCCccchhcccCCCCCCccccccccccc
Q psy3973 95 VFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNNFIDEDATTIRY 174 (285)
Q Consensus 95 vFlLGlf~kran~~GAl~G~i~G~lv~~wv~iga~~~~~~~lP~s~~gC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (285)
+|++|+||||+|++||++|+++|+++.++..+..
T Consensus 441 ~~llglfwkr~~~~gA~~g~i~G~~~~~~~~~~~---------------------------------------------- 474 (593)
T 2xq2_A 441 VFLLGLFWKKTTSKGAIIGVVASIPFALFLKFMP---------------------------------------------- 474 (593)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHSS----------------------------------------------
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHc----------------------------------------------
Confidence 9999999999999999999999999876553210
Q ss_pred ccCCCCccchhhccccchhHHHHHHHHHHHHHHHHhhhccC
Q psy3973 175 TDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFD 215 (285)
Q Consensus 175 ~~~~~~~~~~~~ly~ISyl~ys~iG~~itivVG~lvS~lt~ 215 (285)
..++++|...+++++++++.+++|++++
T Consensus 475 -------------~~~~~~~~~~~~~~~~~iv~v~vSl~t~ 502 (593)
T 2xq2_A 475 -------------LSMPFMDQMLYTLLFTMVVIAFTSLSTS 502 (593)
T ss_dssp -------------CCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -------------CCccHHHHHHHHHHHHHHHHHhheeecC
Confidence 0134677888999999999999999993
No 3
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=84.11 E-value=4.1 Score=39.45 Aligned_cols=46 Identities=17% Similarity=0.277 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhHHHHHhhhhcc
Q psy3973 55 VLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTV 102 (285)
Q Consensus 55 i~~li~Gvl~i~~A~~~~~~g~vl~~~~si~g~~~GpllgvFlLGlf~ 102 (285)
..+++.+++++++++.. ..+.++-++.+.|++.+|+.|+.+.-.|.
T Consensus 338 ~~~~i~~vi~~~i~~~~--~~~~f~~FL~~lg~~l~P~~gI~l~Dy~i 383 (501)
T 2jln_A 338 TGVIVSAVVGLLMMPWQ--FAGVLNTFLNLLASALGPLAGIMISDYFL 383 (501)
T ss_dssp HHHHHHHHHHHHTCGGG--THHHHHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677666665543 23567777788889999999999888764
No 4
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=47.54 E-value=1.2e+02 Score=25.74 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=17.6
Q ss_pred hhhhccccCCh---hhHHHHHHHHHHHHH
Q psy3973 97 TLGMTVTFANQ---QGALAGIVSGLLFCS 122 (285)
Q Consensus 97 lLGlf~kran~---~GAl~G~i~G~lv~~ 122 (285)
+.|+|.++-.. ++++.|.++|.+...
T Consensus 104 laG~f~~~~~~~~~~~~~lg~~ig~~~r~ 132 (192)
T 3rlb_A 104 IAGLFRQKTAPLKLAPVLLGTFVAVLLKY 132 (192)
T ss_dssp GGGGGCCCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhheeccccccHHHHHHHHHHHHHHHH
Confidence 34788876433 567888888877643
No 5
>3p5n_A RIBU, riboflavin uptake protein; transporter, alpha-helical bundle, transport protein; HET: RBF; 3.60A {Staphylococcus aureus}
Probab=19.91 E-value=2.8e+02 Score=22.76 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=19.2
Q ss_pred hhhhcccc-CChhhHHHHHHHHHHHHHHH
Q psy3973 97 TLGMTVTF-ANQQGALAGIVSGLLFCSLV 124 (285)
Q Consensus 97 lLGlf~kr-an~~GAl~G~i~G~lv~~wv 124 (285)
..|++.|| -+.++++.|.++|.+++...
T Consensus 98 ~~~~~y~k~~~~~~~~~~~i~G~~~~~i~ 126 (189)
T 3p5n_A 98 TAYAIYKNKRSTKSLITGLIIATIVMTIV 126 (189)
T ss_dssp HHHHHHSSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 44666654 46678999999988775443
No 6
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=13.93 E-value=1.6e+02 Score=18.98 Aligned_cols=21 Identities=10% Similarity=-0.036 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3973 50 GQLSKVLTFIYGLVCLCIAYL 70 (285)
Q Consensus 50 l~vsRi~~li~Gvl~i~~A~~ 70 (285)
++..|+.+++..++.+++|++
T Consensus 21 i~~~k~gt~~~~~~ll~maif 41 (43)
T 1qle_D 21 IKGATWVSILSIAVLVFLALA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777888888877777777754
No 7
>1m56_D Cytochrome C oxidase; membrane protein, oxidoreductase; HET: HEA PEH; 2.30A {Rhodobacter sphaeroides} SCOP: f.23.8.1 PDB: 1m57_D*
Probab=13.90 E-value=1.9e+02 Score=19.35 Aligned_cols=21 Identities=5% Similarity=-0.005 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3973 50 GQLSKVLTFIYGLVCLCIAYL 70 (285)
Q Consensus 50 l~vsRi~~li~Gvl~i~~A~~ 70 (285)
+++.|+.+++..++.+++|++
T Consensus 29 i~~~k~gt~~~~~~ll~laif 49 (51)
T 1m56_D 29 VRMVTWAAVVIVAALIFLALA 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888877777765
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=12.04 E-value=1.6e+02 Score=18.45 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=8.5
Q ss_pred hhhHHHHHHHHHHH
Q psy3973 107 QQGALAGIVSGLLF 120 (285)
Q Consensus 107 ~~GAl~G~i~G~lv 120 (285)
+.||++|+++|.++
T Consensus 9 s~GaIAGiVvG~v~ 22 (38)
T 2k1k_A 9 TGGEIVAVIFGLLL 22 (38)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CCCceeeeehHHHH
Confidence 35666666666554
No 9
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=11.14 E-value=4.1e+02 Score=18.25 Aligned_cols=22 Identities=9% Similarity=-0.148 Sum_probs=16.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHH
Q psy3973 43 TISDRRGGQLSKVLTFIYGLVC 64 (285)
Q Consensus 43 ~~se~~~l~vsRi~~li~Gvl~ 64 (285)
+++.++..+++|...+.+.++.
T Consensus 24 KPd~~Ef~~iak~~~iG~~i~G 45 (61)
T 3mp7_B 24 KPNWATYKRAAKITGLGIILIG 45 (61)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 5678888999998777666544
No 10
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=11.14 E-value=2e+02 Score=26.56 Aligned_cols=24 Identities=8% Similarity=0.189 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHHHHHHh-hhcc
Q psy3973 191 SYMYYIVLGFCVTMLVGAIV-SRFF 214 (285)
Q Consensus 191 Syl~ys~iG~~itivVG~lv-S~lt 214 (285)
+|.|.-.+|=++.-++|.++ -++.
T Consensus 245 ~~~WVywvgPiiGailaallY~~l~ 269 (340)
T 3iyz_A 245 ENHWIYWVGPIIGAVLAGALYEYVF 269 (340)
T ss_pred CcEeehhHHHHHHHHHHHHHHHHHh
Confidence 45555556655555554443 3444
Done!