Query psy3973
Match_columns 285
No_of_seqs 207 out of 1641
Neff 6.1
Searched_HMMs 13730
Date Fri Aug 16 22:03:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3973.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3973hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hi7b1 a.29.15.1 (B:14-162) D 32.8 85 0.0062 22.9 8.8 28 182-209 119-146 (149)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 18.1 29 0.0021 19.0 1.7 17 88-104 9-25 (30)
3 d1h3ga1 b.1.18.2 (A:3-95) Cycl 12.6 22 0.0016 25.0 0.2 19 251-269 2-20 (93)
4 d3b45a1 f.51.1.1 (A:91-270) Gl 8.9 1.8E+02 0.013 21.2 4.6 27 98-124 152-178 (180)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 8.6 1.7E+02 0.012 16.5 3.0 15 86-100 12-26 (34)
6 d1dlca3 f.1.3.1 (A:61-289) del 7.2 1.1E+02 0.008 24.1 2.6 14 97-110 35-48 (229)
7 d2pila_ d.24.1.1 (A:) Pilin Gc 7.1 2E+02 0.015 19.4 3.9 18 57-74 7-24 (158)
8 d1rh5b_ f.23.28.1 (B:) Preprot 6.9 2.9E+02 0.021 17.2 4.6 22 43-64 17-38 (56)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 6.8 5.1E+02 0.037 20.0 10.1 29 82-110 63-91 (447)
10 d1hnra_ a.155.1.1 (A:) H1 prot 6.4 1.1E+02 0.0082 18.6 1.7 23 255-277 12-34 (47)
No 1
>d2hi7b1 a.29.15.1 (B:14-162) Disulfide bond formation protein DsbB {Escherichia coli [TaxId: 562]}
Probab=32.82 E-value=85 Score=22.90 Aligned_cols=28 Identities=7% Similarity=0.231 Sum_probs=13.0
Q ss_pred cchhhccccchhHHHHHHHHHHHHHHHH
Q psy3973 182 DQYFYLYRISYMYYIVLGFCVTMLVGAI 209 (285)
Q Consensus 182 ~~~~~ly~ISyl~ys~iG~~itivVG~l 209 (285)
+....+..+|.--++++.++...++..+
T Consensus 119 e~~w~~lGlSma~wn~i~~~~~~~~~~~ 146 (149)
T d2hi7b1 119 ERQWDFLGLEMPQWLLGIFIAYLIVAVL 146 (149)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH
T ss_pred cccchhcccCHHHHHHHHHHHHHHHHHH
Confidence 3445677888888888887776666543
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=18.08 E-value=29 Score=19.00 Aligned_cols=17 Identities=6% Similarity=0.141 Sum_probs=12.9
Q ss_pred hhhhHHHHHhhhhcccc
Q psy3973 88 VGGPVLGVFTLGMTVTF 104 (285)
Q Consensus 88 ~~GpllgvFlLGlf~kr 104 (285)
....+.|+|..++|++-
T Consensus 9 ifac~i~lfffaiffre 25 (30)
T d2axtt1 9 IFACIIALFFFAIFFRE 25 (30)
T ss_dssp HHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45678888898888864
No 3
>d1h3ga1 b.1.18.2 (A:3-95) Cyclomaltodextrinase, N-terminal domain {Flavobacterium sp. 92 [TaxId: 197856]}
Probab=12.65 E-value=22 Score=25.03 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.8
Q ss_pred ccCCCCCCCcceeccCCCc
Q psy3973 251 AANDKREPGMSCCGVGRQT 269 (285)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~ 269 (285)
|+.++.||-.+|.||+..+
T Consensus 2 q~i~rvEPp~WW~GM~~~~ 20 (93)
T d1h3ga1 2 TAIEHMEPPFWWAGMQHKG 20 (93)
T ss_dssp CSSCEEESSCEETTCSSCE
T ss_pred CccCCcCCChhHcCCCCCc
Confidence 5677888999999998765
No 4
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=8.91 E-value=1.8e+02 Score=21.21 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=19.2
Q ss_pred hhhccccCChhhHHHHHHHHHHHHHHH
Q psy3973 98 LGMTVTFANQQGALAGIVSGLLFCSLV 124 (285)
Q Consensus 98 LGlf~kran~~GAl~G~i~G~lv~~wv 124 (285)
.....++.+..|-+.|+++|++...+.
T Consensus 152 ~~~~~~~v~~~aHlgG~l~G~~~~~~~ 178 (180)
T d3b45a1 152 FDLFGMSMANGAHIAGLAVGLAMAFVD 178 (180)
T ss_dssp TTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 334456777777888888888876553
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=8.59 E-value=1.7e+02 Score=16.51 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=6.4
Q ss_pred HhhhhhHHHHHhhhh
Q psy3973 86 GVVGGPVLGVFTLGM 100 (285)
Q Consensus 86 g~~~GpllgvFlLGl 100 (285)
|+.--.++|+|+-|-
T Consensus 12 G~~vi~~vG~FfYGs 26 (34)
T d2axtj1 12 GMGVIVIVGLFFYGA 26 (34)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hhhhHhheeeeeeee
Confidence 333334445554443
No 6
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide), N-terminal domain {Bacillus thuringiensis tenebrionis, CRYIIIA (BT13) [TaxId: 1444]}
Probab=7.16 E-value=1.1e+02 Score=24.14 Aligned_cols=14 Identities=14% Similarity=-0.085 Sum_probs=8.9
Q ss_pred hhhhccccCChhhH
Q psy3973 97 TLGMTVTFANQQGA 110 (285)
Q Consensus 97 lLGlf~kran~~GA 110 (285)
++|++||.-+.+.+
T Consensus 35 i~~~lwP~~~~w~~ 48 (229)
T d1dlca3 35 FLNTIWPSEDPWKA 48 (229)
T ss_dssp HHHHTSSSHHHHHH
T ss_pred HHHHhCCCCcHHHH
Confidence 57888986543333
No 7
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=7.10 E-value=2e+02 Score=19.42 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhH
Q psy3973 57 TFIYGLVCLCIAYLAKYL 74 (285)
Q Consensus 57 ~li~Gvl~i~~A~~~~~~ 74 (285)
.+++.+++|+.++.+..+
T Consensus 7 lVViaIIgILaaia~P~~ 24 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAY 24 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 8
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=6.88 E-value=2.9e+02 Score=17.19 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=14.6
Q ss_pred CCChhhHHHHHHHHHHHHHHHH
Q psy3973 43 TISDRRGGQLSKVLTFIYGLVC 64 (285)
Q Consensus 43 ~~se~~~l~vsRi~~li~Gvl~ 64 (285)
+.+-++..++++...+.+.++.
T Consensus 17 KP~~~Ef~~ia~v~~iG~~i~G 38 (56)
T d1rh5b_ 17 KPTKDEYLAVAKVTALGISLLG 38 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH
Confidence 5677788888887665554433
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.80 E-value=5.1e+02 Score=19.99 Aligned_cols=29 Identities=14% Similarity=0.145 Sum_probs=18.6
Q ss_pred HHHHHhhhhhHHHHHhhhhccccCChhhH
Q psy3973 82 LTIFGVVGGPVLGVFTLGMTVTFANQQGA 110 (285)
Q Consensus 82 ~si~g~~~GpllgvFlLGlf~kran~~GA 110 (285)
+.......+-.++.++.|.+..|.+.+-.
T Consensus 63 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~ 91 (447)
T d1pw4a_ 63 FALSGISIAYGFSKFIMGSVSDRSNPRVF 91 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence 33334444556777788888888877643
No 10
>d1hnra_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli [TaxId: 562]}
Probab=6.38 E-value=1.1e+02 Score=18.56 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=16.6
Q ss_pred CCCCCcceeccCCCchhhhhhhh
Q psy3973 255 KREPGMSCCGVGRQTETKEKYIR 277 (285)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~ 277 (285)
+..+...|.|+||.----+++|+
T Consensus 12 ~~g~~~tWTGrGR~P~w~~~~l~ 34 (47)
T d1hnra_ 12 ENGETKTWTGQGRTPAVIKKAMD 34 (47)
T ss_dssp SSCCCEECCTTSSCCSHHHHHHH
T ss_pred CCCCcceeecCCcCCHHHHHHHH
Confidence 33455689999998776666664
Done!