RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3973
(285 letters)
>gnl|CDD|212061 cd11492, SLC5sbd_NIS-SMVT, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (encoded by the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (encoded by the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and -2. SMCT1(encoded by
the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (encoded by the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 522
Score = 168 bits (427), Expect = 2e-48
Identities = 67/168 (39%), Positives = 101/168 (60%), Gaps = 12/168 (7%)
Query: 44 ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVT 103
+S+R+ + K L ++GL+C+ +A+LA+ LG VLQA+L+IFG++GGP+LG+FTLGM
Sbjct: 365 LSERKATNIMKGLVLVFGLLCIGLAFLAELLGGVLQAALSIFGIIGGPLLGLFTLGMFFP 424
Query: 104 FANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRLDNSVDNN 163
+AN +GAL G++ GL F +G GG +PA P + P L N
Sbjct: 425 WANSKGALVGLLVGLAFSLWIGIGG-QPAYPPGPLSTPPLP-----------LSTEGCNY 472
Query: 164 FIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
+ TT T + + + F LYRISY+YY ++G +T++VG IVS
Sbjct: 473 TNNTTTTTSTTTTTTEDESELFSLYRISYLYYSLIGTLITVVVGLIVS 520
>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1
and 2 and related proteins; solute-binding domain.
SMCT1 is a high-affinity transporter of various
monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. Human SMCT1 (hSMCT1, also
called AIT) is encoded by the tumor suppressor gene
SLC5A8. SMCT1 is expressed in the colon, small
intestine, kidney, thyroid gland, retina, and brain.
SMCT1 may contribute to the intestinal/colonic and oral
absorption of monocarboxylate drugs. It also mediates
iodide transport from thyrocyte into the colloid lumen
in thyroid gland and, through transporting L-lactate and
ketone bodies, helps maintain the energy status and the
function of neurons. SMCT2 is a low-affinity transporter
for short-chain fatty acids, lactate, pyruvate, and
nicotinate. hSMCT2 is encoded by the SLC5A12 gene. SMCT2
is expressed in the kidney, small intestine, skeletal
muscle, and retina. In the kidney, SMCT2 may initiate
lactate absorption in the early parts of the tubule,
SMCT1 in the latter parts of the tubule. In the retina,
SMCT1 and SMCT2 may play a differential role in
monocarboxylate transport in a cell type-specific
manner. This subgroup belongs to the solute carrier 5
(SLC5) transporter family.
Length = 536
Score = 113 bits (285), Expect = 1e-28
Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 33/184 (17%)
Query: 42 RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMT 101
R++S+R+ +SK ++ +YG VC+ +A LA +G +LQA+L+IFG+VGGP+LG+F+LG+
Sbjct: 368 RSLSERKLSWISKGMSLLYGAVCIGMAGLASLMGGLLQAALSIFGMVGGPLLGLFSLGIL 427
Query: 102 VTFANQQGALAGIVSGLLFCSLVGFGG---PKPAPKKLPS--TIEGCPNLVPSLSSILRL 156
FAN +GAL+G+++G VG G P P + LP + EGC
Sbjct: 428 FPFANSKGALSGLLTGFAISLWVGIGAQIYPPPPERTLPLPLSTEGC------------- 474
Query: 157 DNSVDNNFIDEDATTIRYTDMSSSQDQYF---------YLYRISYMYYIVLGFCVTMLVG 207
NF + ++ T T+M ++ Y +SY+Y+ +G VT+LVG
Sbjct: 475 ------NFTNTESNTTTTTEMPTTIFPTQPSSRPPLADNWYSLSYLYFSTVGTLVTILVG 528
Query: 208 AIVS 211
IVS
Sbjct: 529 LIVS 532
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1
and related proteins; solute-binding domain. SMCT1 is a
high-affinity transporter of various monocarboxylates
including lactate and pyruvate, short-chain fatty acids,
ketone bodies, nicotinate and its structural analogs,
pyroglutamate, benzoate and its derivatives, and iodide.
Human SMCT1 (hSMCT1, also called AIT) is encoded by the
tumor suppressor gene SLC5A8. Its expression is under
the control of the C/EBP transcription factor. Its
tumor-suppressive role is related to uptake of butyrate,
propionate, and pyruvate, these latter are inhibitors of
histone deacetylases. SMCT1 is expressed in the colon,
small intestine, kidney, thyroid gland, retina, and
brain. SMCT1 may contribute to the intestinal/colonic
and oral absorption of monocarboxylate drugs. SMCT1 also
mediates iodide transport from thyrocyte into the
colloid lumen in thyroid gland and through transporting
l-lactate and ketone bodies helps maintain the energy
status and the function of neurons. In the kidney its
expression is limited to the S3 segment of the proximal
convoluted tubule (in contrast to the low-affinity
monocarboxylate transporter SMCT2, belonging to a
different family, which is expressed along the entire
length of the tubule). In the retina, SMCT1 and SMCT2
may play a differential role in monocarboxylate
transport in a cell type-specific manner, SMCT1 is
expressed predominantly in retinal neurons and in
retinal pigmented epithelial (RPE) cells. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 541
Score = 112 bits (283), Expect = 3e-28
Identities = 66/184 (35%), Positives = 96/184 (52%), Gaps = 33/184 (17%)
Query: 42 RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMT 101
R++S+R+ +S ++ YG +C+ +A LA +G++LQA+L+IFG+VGGP+LG+F LG+
Sbjct: 368 RSLSERKLSWISMGMSLFYGALCIGMAGLASLMGALLQAALSIFGMVGGPLLGLFALGIL 427
Query: 102 VTFANQQGALAGIVSGLLFCSLVGFGG---PKPAPKKLPS--TIEGCPNLVPSLSSILRL 156
FAN GAL G+VSG VG G P + LP + EGC
Sbjct: 428 FPFANSIGALVGLVSGFAISLWVGIGAQIYPPLPERTLPLPLSTEGC------------- 474
Query: 157 DNSVDNNFIDEDATTIRYTDMSSSQDQYF---------YLYRISYMYYIVLGFCVTMLVG 207
NF + ++ T T+M + Y +SY+Y+ LG VTMLVG
Sbjct: 475 ------NFTNTESNTTTTTEMPFTIFPTQPSPRPPLADSWYSLSYLYFSTLGTLVTMLVG 528
Query: 208 AIVS 211
IVS
Sbjct: 529 LIVS 532
>gnl|CDD|212073 cd11504, SLC5sbd_SMVT, Na(+)/multivitamin cotransporter SMVT and
related proteins; solute-binding domain. This
multivitamin transporter SMVT (product of the SLC5A6
gene) transports biotin, pantothenic acid and lipoate,
and is essential for mediating biotin uptake into
mammalian cells. SMVT is expressed in the placenta,
intestine, heart, brain, lung, liver, kidney and
pancreas. Biotin may regulate its own cellular uptake
through participation in holocarboxylase
synthetase-dependent chromatin remodeling events at SMVT
promoter loci. The cis regulatory elements, Kruppel-like
factor 4 and activator protein-2, regulate the activity
of the human SMVT promoter in the intestine.
Glycosylation of the hSMVT is important for its
transport function. This subgroup belongs to the solute
carrier 5 (SLC5) transporter family.
Length = 527
Score = 107 bits (268), Expect = 3e-26
Identities = 61/173 (35%), Positives = 90/173 (52%), Gaps = 21/173 (12%)
Query: 44 ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVT 103
+++ R LSK L YGL+CL +AYLA +GSVLQA+ +IFG++GGP+LG+F LGM
Sbjct: 367 MTEARATLLSKGLALGYGLLCLAMAYLASLMGSVLQAANSIFGMIGGPLLGLFCLGMFFP 426
Query: 104 FANQQGALAGIVSGLLFCSLVGFGG---PKPAPKKLPSTIEGC--PNLVPSLSSILRLDN 158
+AN GA+ G++SGL+ +G G +P K P I PN+ + ++
Sbjct: 427 WANSTGAVVGLLSGLVMAFWIGIGSFVFRMYSPTKSPP-INDTIFPNVTNATAATP---- 481
Query: 159 SVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
TT+ T LY +SYM+Y ++VG +VS
Sbjct: 482 -----------TTLFATPTDPRPPGLQALYSLSYMWYSAHNSATVVVVGLVVS 523
>gnl|CDD|212072 cd11503, SLC5sbd_NIS, Na(+)/iodide cotransporter NIS and related
proteins; solute-binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. NIS is expressed in the thyroid,
colon, ovary, and in human breast cancers. It mediates
the active transport and the concentration of iodide
from the blood into thyroid follicular cells, a
fundamental step in thyroid hormone biosynthesis, and is
the basis of radioiodine therapy for thyroid cancer.
Mutation in the SLC5A5 gene can result in a form of
thyroid hormone dysgenesis. Human NIS exists mainly as a
dimer stabilized by a disulfide bridge. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 535
Score = 106 bits (265), Expect = 8e-26
Identities = 58/178 (32%), Positives = 84/178 (47%), Gaps = 15/178 (8%)
Query: 42 RTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLG-SVLQASLTIFGVVGGPVLGVFTLGM 100
T+S R+ +SK L+ IYG C+ +A L+ LG VLQ S T+ GV+ GP+LG F LGM
Sbjct: 362 PTLSPRKLVFISKGLSLIYGSACITVAALSSLLGGGVLQGSFTVMGVISGPLLGAFALGM 421
Query: 101 TVTFANQQGALAGIVSGLLFCSLVGFGGP-KPAPKK----LPSTIEGCPNLVPSLSSILR 155
V N G +G+ GL V GG P + LP++ CP +LS+
Sbjct: 422 FVPACNTPGVFSGLAVGLALSLWVAVGGTLYPPSAQIMGVLPTSAAHCPLTNVTLSTTGS 481
Query: 156 LDNSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRF 213
++ S + + + Y ISY+YY LG T+L G ++S
Sbjct: 482 VNAS---------SPPQSSSMDNIRPALADDFYAISYLYYGALGTLSTVLCGVLISYL 530
>gnl|CDD|212089 cd11520, SLC5sbd_SMCT2, Na(+)/monocarboxylate cotransporter SMCT2
and related proteins; solute-binding domain. SMCT2 is a
low-affinity transporter for short-chain fatty acids,
lactate, pyruvate, and nicotinate. Human SMCT2 (hSMCT2)
is encoded by the SLC5A12 gene. SMCT2 is expressed in
the kidney, small intestine, skeletal muscle, and
retina. In the kidney, it is expressed in the apical
membrane of the proximal convoluted tubule, along the
entire length of the tubule (in contrast to the
high-affinity monocarboxylate transporter SMCT1,
belonging to a different family, which is limited to the
S3 segment of the tubule). SMCT2 may initiate lactate
absorption in the early parts of the tubule. In the
retina, SMCT1 and SMCT2 may play a differential role in
monocarboxylate transport in a cell type-specific
manner, SMCT2 is expressed exclusively in Muller cells.
Nicotine transport by hSMCT2 is inhibited by several
non-steroidal anti-inflammatory drugs. This subgroup
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 529
Score = 92.2 bits (229), Expect = 5e-21
Identities = 56/174 (32%), Positives = 89/174 (51%), Gaps = 24/174 (13%)
Query: 44 ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVT 103
+S++ +SK L ++G++C +A A +G V+QA+L+I G+ GGP+LG+FTLG+
Sbjct: 370 LSEKLSTWISKGLCILFGVMCTSMAVAASLMGGVVQAALSIHGMCGGPMLGLFTLGIVFP 429
Query: 104 FANQQGALAGIVSGLLFCSLVGFGG---PKPAPKKLP---STIEGCPNLVPSLSSILRLD 157
F N +GAL G+++G+ VG G P P+ K LP ST GC
Sbjct: 430 FVNWKGALGGLLTGITLSFWVGIGAFIYPAPSSKTLPLELST-AGC-------------- 474
Query: 158 NSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRISYMYYIVLGFCVTMLVGAIVS 211
++ AT I +D D + Y +SY+YY +G + G ++S
Sbjct: 475 ILANSTATPTPATPILTSDRPLLADTW---YSLSYLYYSAVGCLGCIAAGLLIS 525
>gnl|CDD|212036 cd10326, SLC5sbd_NIS-like, Na(+)/iodide (NIS) and
Na(+)/multivitamin (SMVT) cotransporters, and related
proteins; solute binding domain. NIS (product of the
SLC5A5 gene) transports I-, and other anions including
ClO4-, SCN-, and Br-. SMVT (product of the SLC5A6 gene)
transports biotin, pantothenic acid and lipoate. This
subfamily also includes SMCT1 and 2. SMCT1(the product
of the SLC5A8 gene) is a high-affinity transporter of
various monocarboxylates including lactate and pyruvate,
short-chain fatty acids, ketone bodies, nicotinate and
its structural analogs, pyroglutamate, benzoate and its
derivatives, and iodide. SMCT2 (product of the SLC5A12
gene) is a low-affinity transporter for short-chain
fatty acids, lactate, pyruvate, and nicotinate. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 477
Score = 76.0 bits (188), Expect = 1e-15
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 38 YSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFT 97
+ + +S+R+ +SK LT + G++C +A LA GSVLQA L I G GP+LG+F
Sbjct: 358 FKRSWQLSERKYVHISKSLTLLLGILCFGMALLASNNGSVLQAILKIAGYTYGPLLGLFA 417
Query: 98 LGMTVTFANQQ--GALAGIVSGLLFCSLVGFGG 128
G+ AN+ G L G+++ +L LVG
Sbjct: 418 FGLFTKRANKDSWGPLVGLLAPVLSYLLVGISA 450
>gnl|CDD|212064 cd11495, SLC5sbd_NIS-like_u3, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 477
Score = 59.1 bits (144), Expect = 5e-10
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 45 SDRRGGQLSKVLTFIYGLVCLCIA-YLAKY-LGSVLQASLTIFGVVGGPVLGVFTLGMTV 102
SD++ ++++++T + G++ A LA + S+L L + G+ GG + G+F LG+
Sbjct: 362 SDKKYLRVARLITLLVGILGTGGALLLAHSNVKSLLDLFLKLTGLFGGGLAGLFLLGIFT 421
Query: 103 TFANQQGALAGIVSGLLFCSLVGFGGPKPAP 133
AN +GALAGI+ +L +
Sbjct: 422 KRANNRGALAGIIVSVLVTFWISLSTGALYT 452
>gnl|CDD|212062 cd11493, SLC5sbd_NIS-like_u1, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 479
Score = 59.1 bits (144), Expect = 6e-10
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 27 LSLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLG-SVLQASLTIF 85
L+ S Q LY R +SD + +LS++LT ++ +V + IA L ++ V++ L+I
Sbjct: 347 LASSTVQDLYQPWLRRRLSDSKLLRLSRLLTLVWAVVLVAIALLFQHTDQPVVELGLSIA 406
Query: 86 GVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFG 127
G +LGVF LG+ A+Q+ A+A + G L L+ FG
Sbjct: 407 SFTYGGLLGVFLLGLLTKRASQRDAIAAFIVGFLVMLLLIFG 448
>gnl|CDD|233138 TIGR00813, sss, transporter, SSS family. The Solute:Sodium
Symporter (SSS) Family (TC 2.A.21) Members of the SSS
family catalyze solute:Na+ symport. The solutes
transported may be sugars, amino acids, nucleosides,
inositols, vitamins, urea or anions, depending on the
system. Members of the SSS family have been identified
in bacteria, archaea and animals, and all functionally
well characterized members catalyze solute uptake via
Na+ symport. Proteins of the SSS generally share a core
of 13 TMSs, but different members of the family may have
different numbers of TMSs. A 13 TMS topology with a
periplasmic N-terminus and a cytoplasmic C-terminus has
been experimentally determined for the proline:Na+
symporter, PutP, of E. coli [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 407
Score = 57.3 bits (139), Expect = 2e-09
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 51 QLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGA 110
+ + + + A G VLQ FG +G P L VF LG+ N +GA
Sbjct: 341 IVMRGRIAVLVAAVIAGFVAAAQGGQVLQYVQEAFGGLGAPFLPVFLLGIFWKRMNAKGA 400
Query: 111 LAGIVSG 117
LAG+++G
Sbjct: 401 LAGMIAG 407
>gnl|CDD|212032 cd10322, SLC5sbd, Solute carrier 5 family, sodium/glucose
transporters and related proteins; solute-binding
domain. This family represents the solute-binding
domain of SLC5 proteins (also called the sodium/glucose
cotransporter family or solute sodium symporter family)
that co-transport Na+ with sugars, amino acids,
inorganic ions or vitamins. Family members include: the
human glucose (SGLT1, 2, 4, 5), chiro-inositol (SGLT5),
myo-inositol (SMIT), choline (CHT), iodide (NIS),
multivitamin (SMVT), and monocarboxylate (SMCT)
cotransporters, as well as Vibrio parahaemolyticus
glucose/galactose (vSGLT), and Escherichia coli proline
(PutP) and pantothenate (PutF) cotransporters. Vibrio
parahaemolyticus Na(+)/galactose cotransporter (vSGLT)
has 13 transmembrane helices (TMs): TM-1, an inverted
topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs
numbered to conform to the solute carrier 6 family
Aquifex aeolicus LeuT). One member of this family, human
SGLT3, has been characterized as a glucose sensor and
not a transporter. Members of this family are important
in human physiology and disease.
Length = 455
Score = 53.7 bits (130), Expect = 3e-08
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 41 NRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGM 100
N SD++ ++ ++ T + G++ L +A + S++ G++ + LG+
Sbjct: 346 NPKASDKKLLRVGRIATVVVGVLALLLAL---FPPSIILLLSLAAGLLAAALFPPLLLGL 402
Query: 101 TVTFANQQGALAGIVSGLLFCSLVGFGGPKPAP 133
A + GA+A ++ GL+ + G
Sbjct: 403 FWKRATKAGAIASLIVGLIVTLVWLLLGLASPF 435
Score = 27.5 bits (62), Expect = 8.5
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 21/86 (24%)
Query: 43 TISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTV 102
T+ +R + ++L+ I ++ L YL + L I + G + G
Sbjct: 103 TLLERYYSKGVRILSAIIIIIFLIG-----YLAAQLIGGGIILSTLLG---IPYWTGA-- 152
Query: 103 TFANQQGALAGIVSGLLFCSLVGFGG 128
I+ ++ FGG
Sbjct: 153 -----------IILAVIVILYTVFGG 167
>gnl|CDD|212063 cd11494, SLC5sbd_NIS-like_u2, uncharacterized subgroup of the
Na(+)/iodide (NIS) cotransporter subfamily; putative
solute-binding domain. Proteins belonging to the same
subfamily as this uncharacterized subgroup include i)
NIS, which transports I-, and other anions including
ClO4-, SCN-, and Br-, ii) SMVT, which transports biotin,
pantothenic acid and lipoate, and iii) the
Na(+)/monocarboxylate cotransporters, SMCT1 and 2. SMCT1
is a high-affinity transporter while SMCT2 is a
low-affinity transporter. This subgroup belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 481
Score = 47.6 bits (114), Expect = 3e-06
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 45 SDRRGGQLSKVLTFIYGLVCLCIA-YLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVT 103
SD ++S++LT +GL+ + A + A LGS+++A I GP+LGVF L
Sbjct: 374 SDEHYLKVSRLLTVFWGLLAIVFALFFAGSLGSLIEAVNKIGSYFYGPILGVFLLAFFTK 433
Query: 104 FANQQGALAGIVSGLLFCSLVGF 126
N +G G + G++ L+
Sbjct: 434 KVNGKGVFIGAILGVIVVILLWL 456
Score = 29.5 bits (67), Expect = 2.0
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 186 YLYRISYMYYIVLGFCVTMLVGAIVS 211
+S+++ V+G V ++V ++S
Sbjct: 456 LFPDVSWLWLNVIGCLVVIVVAYLLS 481
>gnl|CDD|212048 cd11478, SLC5sbd_u2, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 45.7 bits (109), Expect = 1e-05
Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 35 LYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLG 94
+Y + SD+ ++ ++ T + L+ + AY+A +++ T+F P+
Sbjct: 355 IYQTYIRKDASDKHYLKVGRIATVVGVLISIGTAYIAMSFNNIMDYLQTLFSFFNAPLFA 414
Query: 95 VFTLGMTVTFANQQGALAGIVSGLLFCSLVGFG 127
F LGM A G G+++G ++V +G
Sbjct: 415 TFLLGMFWKRATPWGGFWGLLAGTAS-AIVLYG 446
>gnl|CDD|223664 COG0591, PutP, Na+/proline symporter [Amino acid transport and
metabolism / General function prediction only].
Length = 493
Score = 45.4 bits (108), Expect = 2e-05
Identities = 24/120 (20%), Positives = 46/120 (38%), Gaps = 6/120 (5%)
Query: 35 LYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLG 94
+Y + S++ ++ +V+ + L+ L +A L S+L G L
Sbjct: 357 IYKRFLRKNASEKELVRIGRVVVLVIALLALLLALLP--PSSILGLVSLALAGFGAQFLP 414
Query: 95 VFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSIL 154
LG+ A ++GA+AG+++GL +V K P L + +
Sbjct: 415 ALLLGLFWKRATKRGAIAGMIAGL----IVVLLTWLLFLKSFPYGAFALGGLYEVVPGFI 470
>gnl|CDD|234293 TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705
subfamily. This family belongs to a larger family of
transporters of the sodium:solute symporter superfamily,
TC 2.A.21. Members of this strictly bacterial protein
subfamily are found almost invariably immediately
downstream from a member of family TIGR03647.
Occasionally, the two genes are fused.
Length = 552
Score = 38.8 bits (91), Expect = 0.003
Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 28 SLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKY-LGSVLQASLTIFG 86
++SH LY N S+++ ++++ + + Y G + Q FG
Sbjct: 393 AISH--DLYYRIINPNASEKQRLLVARIALVV---AAVIAGYFGLNPPGFIAQVVAFAFG 447
Query: 87 VVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFC 121
+ LG+ N++GA+AG+++GL F
Sbjct: 448 LAAASFFPALVLGIFWKRMNREGAIAGMLTGLGFT 482
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 38.0 bits (89), Expect = 0.004
Identities = 18/98 (18%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
Query: 41 NRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGP-VLGVFTLG 99
S++ ++ ++ T ++GL+ + +A + +G L + +GGP +L
Sbjct: 361 KPDASEKELLRVGRLATVLFGLLSIVVALASDSIGGAFDIVLALGAGLGGPLLLPWL-WW 419
Query: 100 MTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLP 137
+ +A I+ GLL ++ G + + P
Sbjct: 420 RFNAWGEIWAMIASIIVGLLVSVVLKIGLGELFLLQFP 457
Score = 30.2 bits (69), Expect = 1.3
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 13/77 (16%)
Query: 44 ISDRRGGQLSKVLTFIYGL--VCLCIAYL---AKYLGSVLQASLTIFGVVGGPVLGVFTL 98
R G L + + + L A+L A + +V ++ +LG+ TL
Sbjct: 109 YGGRFGAPLRQFYAWYFALLSNVGIGAWLYLAAIKVAAVFGPWDITLTIL---ILGLITL 165
Query: 99 GMTVTFANQQGALAGIV 115
+V G L +V
Sbjct: 166 IYSVI-----GGLWAVV 177
>gnl|CDD|226625 COG4145, PanF, Na+/panthothenate symporter [Coenzyme metabolism].
Length = 473
Score = 37.7 bits (88), Expect = 0.006
Identities = 33/116 (28%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 35 LYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLG 94
LY ++ ++R+ ++S + T I+G + L A ++ +L FG + L
Sbjct: 349 LYLNVRDKLKNERKIKRISMIATLIFGALLLIAAL--NPPEMIIWLNLFAFGGLEAVFLW 406
Query: 95 VFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSL 150
LG+ AN GALA ++ GL+ L+ F G K I G +VPSL
Sbjct: 407 PLVLGLYWEKANAAGALASMIVGLVLYVLLAFLGIK---------ILGFHPIVPSL 453
>gnl|CDD|212045 cd11475, SLC5sbd_PutP, Na(+)/proline cotransporter PutP and related
proteins; solute binding domain. Escherichia coli PutP
catalyzes the Na+-coupled uptake of proline with a
stoichiometry of 1:1. The putP gene is part of the put
operon; this operon in addition encodes a proline
dehydrogenase, allowing the use of proline as a source
of nitrogen and/or carbon. This subfamily also includes
the Bacillus subtilis Na+/proline cotransporter (OpuE)
which has an osmoprotective instead of catabolic role.
Expression of the opuE gene is under osmotic control and
different sigma factors contribute to its regulation; it
is also a putative CcpA-activated gene. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 464
Score = 36.3 bits (85), Expect = 0.013
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 35 LYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVG---GP 91
LY + SD+ +S++ + L+ L IA SV + +G GP
Sbjct: 347 LYKAFLRKEASDKELVWVSRLAVLVIALIALIIALNPP--SSVFDLVSFAWAGLGAAFGP 404
Query: 92 V--LGVFTLGMTVTFANQQGALAGIVSGLL 119
+ L ++ T +QGALAG+++G +
Sbjct: 405 LLLLSLYWKRTT-----RQGALAGMIAGAV 429
>gnl|CDD|212050 cd11480, SLC5sbd_u4, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 484
Score = 33.3 bits (77), Expect = 0.15
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 19/110 (17%)
Query: 28 SLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKY--------LGSVLQ 79
+L+H LY+ S+R +++++ + G+V + +A LA L +
Sbjct: 349 ALAH--DLYAKVIRPGASEREELRVARIAAVVIGVVAILLALLAPPQNVAFLVALAFAIA 406
Query: 80 ASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGP 129
AS F V+ +LG+F T GA+AG++ GLL ++ P
Sbjct: 407 AS-AFFPVL---LLGIFWRRFTT-----AGAIAGMLVGLLSSLVLIVLSP 447
>gnl|CDD|109527 pfam00474, SSF, Sodium:solute symporter family. Membership of this
family is supported by a significant blast score.
Length = 406
Score = 33.1 bits (76), Expect = 0.16
Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 52 LSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGAL 111
S+++ + + + +A +G + F +G L V L + N+QGAL
Sbjct: 342 RSRIIVLVVISLAILLAVQPAQMG-IAFLVQLAFAGLGSAFLPVILLAIFWKRVNEQGAL 400
Query: 112 AGIVSG 117
G++ G
Sbjct: 401 WGMIIG 406
>gnl|CDD|219062 pfam06496, DUF1097, Protein of unknown function (DUF1097). This
family consists of several bacterial putative membrane
proteins.
Length = 140
Score = 31.4 bits (72), Expect = 0.24
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 14/85 (16%)
Query: 55 VLTFIYGLVC-LCIAYLAKYLGSVLQASLTIFGVVGG--------PVL----GVFTLGMT 101
+ T + G++ I + LG A + G+V P+L G F LG
Sbjct: 46 LATNLSGVLWAALIILGSGLLGGNPLAGYILTGIVAFVMCLQAKVPLLSFIPGTF-LGCA 104
Query: 102 VTFANQQGALAGIVSGLLFCSLVGF 126
TFA G ++ L +L+G+
Sbjct: 105 STFAAIGGDWLVVLPSLAVGALLGY 129
>gnl|CDD|226627 COG4147, DhlC, Predicted symporter [General function prediction
only].
Length = 529
Score = 32.3 bits (74), Expect = 0.25
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 28 SLSHCQPLYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGV 87
++SH LY+ + ++++ +++++ I G+V + + L G+V F +
Sbjct: 370 AVSH--DLYAMVIKKGATEKKEVRVARIAVVILGVVAILLGILPP--GNVAFLVALAFAL 425
Query: 88 VGGPVLGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGP 129
V LG+ N GA+AG++ GL+ ++ P
Sbjct: 426 AASANFPVIVLGLFWKRLNTAGAIAGMLLGLIVTLVLIILSP 467
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 32.3 bits (74), Expect = 0.26
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 44 ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVF------- 96
ISDR GG ++ L + V + + LG V SL +F +V L F
Sbjct: 284 ISDRLGG--ARKLLMSFLGVAMGAFLVV--LGLVSPLSLAVF-IVLFVALFFFSGAGNGS 338
Query: 97 TLGMT-VTFANQQGALAGIVSG 117
T + F GA++G+V
Sbjct: 339 TFALVPHIFRRATGAVSGLVGA 360
>gnl|CDD|212056 cd11487, SLC5sbd_SGLT2, Na(+)/glucose cotransporter SGLT2 and
related proteins; solute-binding domain. Human SGLT2
(hSGLT2) is a high-capacity, low-affinity glucose
transporter, that plays an important role in renal
glucose reabsorption. It is encoded by the SLC5A2 gene
and expressed almost exclusively in renal proximal
tubule cells. Mutations in hSGLT2 cause Familial Renal
Glucosuria (FRG), a rare autosomal defect in glucose
transport. hSGLT2 is a major drug target for regulating
blood glucose levels in diabetes. hSGLT2 is predicted to
have 14 membrane-spanning regions. This subgroup belongs
to the solute carrier 5 (SLC5) transporter family.
Length = 583
Score = 31.8 bits (72), Expect = 0.43
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 91 PVLGVFTLGMTVTFANQQGALAGIVSGLL--FCSLV---GFG-GPKPAPKKLPSTIEG 142
P+ VF L + V N+ GA G++ GLL C +V FG G AP P+ I G
Sbjct: 443 PIAAVFFLALFVKRVNEPGAFWGLIGGLLMGLCRMVPEFSFGSGSCVAPSSCPAIICG 500
>gnl|CDD|219921 pfam08592, DUF1772, Domain of unknown function (DUF1772). This
domain is of unknown function.
Length = 137
Score = 30.4 bits (69), Expect = 0.47
Identities = 8/52 (15%), Positives = 16/52 (30%)
Query: 53 SKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTF 104
+ G L AYLA + + + + + +T+ F
Sbjct: 34 PAFMPLFAGTSALLFAYLAVLALRGRGGPGSRLLLAAAALYLLGVVPVTLLF 85
>gnl|CDD|212060 cd11491, SLC5sbd_SMIT, Na(+)/myo-inositol cotransporter SMIT and
related proteins; solute-binding domain. Human SMIT is
a high-affinity myo-inositol transporter, and is
expressed in brain, heart, kidney, and lung. Inhibition
of myo-inositol uptake, through down-regulation of SMIT,
may be a common mechanism of action of mood stabilizers,
including lithium, carbamazepine, and valproate. SMIT is
encoded by the SLC5A3 gene, which is a candidate gene
for pathogenesis of nervous system dysfunction in Down
syndrome (DS). The SNP, 21q22 near SLC5A3-MRPS6-KCNE2,
has been associated with coronary heart disease,
cardiovascular disease, and myocardial infarction. SMIT
may also be involved in the pathogeneisis of congenital
cataract. SMIT also plays roles in osteogenesis, bone
formation, and bone mineral density determination. This
subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 600
Score = 30.9 bits (70), Expect = 0.93
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 190 ISYMYYIVLGFCVTMLVGAIVSRFFDTPSYDVNLLTPWVAARARR 234
I YMY+ ++ F + L+ IVS P + T W + R
Sbjct: 494 IHYMYFAIVLFWTSGLIVVIVSLLTKPPPKENISRTTWWTRQNSR 538
>gnl|CDD|217634 pfam03601, Cons_hypoth698, Conserved hypothetical protein 698.
Length = 305
Score = 30.3 bits (69), Expect = 0.96
Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 12/80 (15%)
Query: 62 LVCLCIAYLAKYLGSV---LQASLTIFGVVGGPVLGVFTLGMT------VTFANQQGALA 112
L+ L IA LA LG +V G +LG LG+ V F++++
Sbjct: 4 LLSLLIAVLAYLLGKSPIFPHLGALTLAIVLGMLLGNLFLGLQEQLKAGVLFSSKKLLRL 63
Query: 113 GIV---SGLLFCSLVGFGGP 129
GIV L + G
Sbjct: 64 GIVLYGFRLTLSDIAAVGLK 83
>gnl|CDD|223648 COG0575, CdsA, CDP-diglyceride synthetase [Lipid metabolism].
Length = 265
Score = 30.4 bits (69), Expect = 0.99
Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 15/92 (16%)
Query: 55 VLTFIYGLVC-LCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAG 113
+L IY L L + Y+G L A L LGV G+ + G
Sbjct: 94 LLGVIYYLSDSLFKLFGLLYVGVGLLALLPFR-------LGVLYSGLILLLL----LFLG 142
Query: 114 IVSGLLFCSLVG--FGGPKPAPKKLPS-TIEG 142
+ +G + VG FG K APK P T EG
Sbjct: 143 VWAGDIGAYFVGRRFGKHKLAPKISPKKTWEG 174
>gnl|CDD|218193 pfam04657, DUF606, Protein of unknown function, DUF606. This
family includes several uncharacterized bacterial
proteins.
Length = 139
Score = 29.4 bits (67), Expect = 1.2
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 33/89 (37%)
Query: 68 AYLAKYLGSVLQASLTIFGV-----------------------------VGGPVLGVFTL 98
A L K LGS L ASL F V +GG +LG F +
Sbjct: 21 ARLGKSLGSPLLASLVSFLVGTIVLLLLLLFTRRPLSLGALASAPWWAWLGG-LLGAFYV 79
Query: 99 GMTVTFANQQGA---LAGIVSGLLFCSLV 124
+ + + GA + +++G L SL+
Sbjct: 80 TLNILLVPRLGAALTVVLVIAGQLLMSLL 108
>gnl|CDD|212046 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotransporter DUR3, and
related proteins; solute-binding domain. Dur3 is the
yeast plasma membrane urea transporter. Saccharomyces
cerevisiae DUR3 also transports polyamine. The polyamine
uptake of S. cerevisiae DUR3 is activated upon its
phosphorylation by polyamine transport protein kinase 2
(PTK2). S. cerevisiae DUR3 also appears to play a role
in regulating the cellular boron concentration. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 493
Score = 30.2 bits (69), Expect = 1.4
Identities = 21/119 (17%), Positives = 44/119 (36%), Gaps = 8/119 (6%)
Query: 41 NRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGM 100
N + ++ ++S++ +GL +A Y+G L G++ G + LG+
Sbjct: 365 NPNATGKQLLRVSRIAVIGFGLFMGGLAVGLNYIGISLGWLYLFMGILIGSAVFPVALGL 424
Query: 101 TVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKK-----LPSTIEGCPNLVPSLSSIL 154
A+ ++GL L + A + +T P L +L ++
Sbjct: 425 YWRRLTGAAAVVSPIAGLAA-GLAVW--LVTAKSYYGEVNVDTTGSNYPMLAGNLVALF 480
>gnl|CDD|212044 cd11474, SLC5sbd_CHT, Na(+)- and Cl(-)-dependent choline
cotransporter CHT and related proteins; solute-binding
domain. Na+/choline co-transport by CHT is Cl-
dependent. Human CHT (also called CHT1) is encoded by
the SLC5A7 gene, and is expressed in the central nervous
system. hCHT1-mediated choline uptake may be the
rate-limiting step in acetylcholine synthesis, and
essential for cholinergic transmission. Changes in this
choline uptake in cortical neurons may contribute to
Alzheimer's dementia. This subfamily belongs to the
solute carrier 5 (SLC5) transporter family.
Length = 464
Score = 30.2 bits (69), Expect = 1.4
Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
Query: 43 TISDRRGGQLSKVLTFIYGLVCLCIAYLAK--YLGSVLQASLTIFGVVGGPVLGVFTLGM 100
SDR + ++ ++G + +A + Y L + LT+ G+ + G++
Sbjct: 349 KASDRELLWVMRISVVVFGAIATLLALTVESIYGLVELASDLTLVGLFVPLLAGLYW--- 405
Query: 101 TVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCP 144
AN GALA I+ GL+ L G +P ++G P
Sbjct: 406 --KRANTYGALAAIIVGLVLRLLGGELLLGLPGYDIPPQLQGFP 447
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 30.2 bits (68), Expect = 1.5
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 58 FIYGLVCLCIAYL----AKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAG 113
FI L+ + IA++ + G + +I +G P+ VF L + N+ GA G
Sbjct: 403 FILVLIGISIAWVPIVQSAQSGQLFDYIQSITSYLGPPIAAVFLLAIFCKRVNEPGAFWG 462
Query: 114 IVSGLL 119
+ GLL
Sbjct: 463 LCVGLL 468
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 30.0 bits (68), Expect = 1.7
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 7/83 (8%)
Query: 55 VLTFIYGLV----CLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGA 110
+++ I G V +L G + L + G G + + +F
Sbjct: 323 LVSIIVGAVNFAFTFVAIFLVDRFG---RRPLLLIGAAGMAICLFVLGILGASFVTGSSK 379
Query: 111 LAGIVSGLLFCSLVGFGGPKPAP 133
+G V+ + + F P
Sbjct: 380 SSGNVAIVFILLFIAFFAMGWGP 402
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 29.3 bits (66), Expect = 2.1
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 5/89 (5%)
Query: 44 ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGS--VLQASLTIFGVVGGPVLG-VFTLGM 100
+SDR G + +L + ++ L S L +L + G G V + L
Sbjct: 260 LSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVS 319
Query: 101 TVTFANQQGALAGIVSGLLFCSLVGFGGP 129
+ ++G +G+ + SL G GP
Sbjct: 320 DLAPKEERGTASGLYN--TAGSLGGALGP 346
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 29.6 bits (67), Expect = 2.1
Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 14/114 (12%)
Query: 55 VLTFIYGLVCLCIAYLAKYL-----GSVLQASLTIFGVVGGPVLGVFTLGMTVTFA---- 105
+L+ + G++ L + L ++ G + A L + +LG+ L + ++
Sbjct: 460 ILSLLIGVLHLSLGLLLGFINRVRSGDIKGAILPQLLWLLI-ILGLLLLILGYKWSVPEL 518
Query: 106 -NQQGA--LAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEGCPNLVPSLSSILRL 156
GA A + GLL L+ G A + EG +L+ + S LRL
Sbjct: 519 LGMVGAMFGAFGILGLLVVGLILVPGLV-AIGQGILGFEGVLSLLSDVLSYLRL 571
>gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional.
Length = 312
Score = 29.2 bits (66), Expect = 2.3
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 189 RISYMYYIVLGFCVTMLVGAIVSRFFDTPSY 219
+ S M I+ GF + M++ I +RFF P
Sbjct: 207 KRSLMILIISGFIL-MIIFVIWARFFIKPKR 236
>gnl|CDD|212058 cd11489, SLC5sbd_SGLT5, Na(+)/glucose cotransporter SGLT5 and
related proteins; solute-binding domain. Human SGLT5 is
a glucose transporter, which also transports galactose.
It is encoded by the SLC5A10 gene, and is exclusively
expressed in the renal cortex. This subgroup belongs to
the solute carrier 5 (SLC5) transporter family.
Length = 604
Score = 29.5 bits (66), Expect = 2.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 91 PVLGVFTLGMTVTFANQQGALAGIVSGL 118
PV VF L + AN+QGA G+++GL
Sbjct: 437 PVTAVFVLAVFWRRANEQGAFWGLMAGL 464
>gnl|CDD|212039 cd10329, SLC5sbd_SGLT1-like, Na(+)/glucose cotransporter SGLT1 and
related proteins; solute binding domain. This subfamily
includes the solute-binding domain of SGLT proteins that
cotransport Na+ with various solutes. Its members
include: the human glucose (SGLT1, -2, -4, -5 ),
chiro-inositol (SGLT5), and myo-inositol (SMIT)
cotransporters. It also includes human SGLT3 which has
been characterized as a glucose sensor and not a
transporter. It belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 564
Score = 29.6 bits (67), Expect = 2.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 91 PVLGVFTLGMTVTFANQQGALAGIVSGLLF 120
P+ VF L + N+QGA G+++GL+
Sbjct: 437 PIAAVFVLAIFWKRVNEQGAFWGLMAGLVV 466
>gnl|CDD|219656 pfam07947, YhhN, YhhN-like protein. The members of this family are
similar to the hypothetical protein yhhN expressed by E.
coli. Many of the members of this family are annotated
as being possible transmembrane proteins, and in fact
they all have a high proportion of hydrophobic residues.
Length = 182
Score = 28.7 bits (65), Expect = 2.4
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 4/60 (6%)
Query: 58 FIYGLVCLCIAYLAKYLGS--VLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGIV 115
F+ GL +A+L Y+ + Q S + + +L V + + G L V
Sbjct: 52 FLAGLGAFLLAHLL-YIVAFLRRQLSSPLRWPLALLLL-VAGAALFALLWPRLGELKVPV 109
>gnl|CDD|219154 pfam06738, DUF1212, Protein of unknown function (DUF1212). This
family represents a conserved region within a number of
hypothetical membrane proteins of unknown function found
in eukaryotes, bacteria and archaea.
Length = 193
Score = 28.6 bits (65), Expect = 2.5
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 55 VLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQ--QGALA 112
++ GL A L G L F + G + G+ + N ALA
Sbjct: 105 LVVLAAGLASAAFAVL---FGGDWIDFLIAF--LAGLLGGLLRQILAKRGLNPFVFEALA 159
Query: 113 GIVSGLLFCSLVGFGGP 129
V+ L+ V G
Sbjct: 160 AFVASLIALLAVSLGLG 176
>gnl|CDD|222385 pfam13796, Sensor, Putative sensor. This family is often found at
the N-terminus of proteins containing pfam07730 and
pfam02518. The N-termini of proteins containing these
two domains often function in stimulus sensing.
Length = 181
Score = 28.4 bits (64), Expect = 2.9
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 55 VLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGI 114
+L GLV + + LG+ L + VG P+L L FA+ + A
Sbjct: 3 LLGLPLGLVAFVLLVVGLVLGAGL-----LVLGVGLPLL-PLALVAARGFADLERRRARA 56
Query: 115 VSG 117
+ G
Sbjct: 57 LLG 59
>gnl|CDD|234462 TIGR04086, TIGR04086_membr, putative membrane protein, TIGR04086
family. Members of this family of strongly hydrophobic
putative transmembrane protein average about 125 amino
acids in length and occur mostly, but not exclusively,
in the Firmicutes. Members are quite diverse in
sequence. The function is unknown.
Length = 115
Score = 27.5 bits (62), Expect = 4.0
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 55 VLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTF-ANQQGALAG 113
++ +I L+ L I L Y + + SL+ ++ +L VF G A +G L G
Sbjct: 8 LVAYILTLILLLILALLLYFTDLSEGSLSWL-ILIIYILSVFIGGFIAGKKAGSKGWLWG 66
Query: 114 IVSGLLFCSLV 124
++ GLL+ ++
Sbjct: 67 LLVGLLYFLIL 77
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 28.6 bits (64), Expect = 4.1
Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 3/79 (3%)
Query: 51 QLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGA 110
K+ I GL AY YL + I + V G+ + +
Sbjct: 334 AARKIFNGIGGLGPGIFAYALPYLSAAF-YLTIIILTLANAVSSGPLAGVLINSLDLAPR 392
Query: 111 LAGIVSGLLFCSLVGFGGP 129
G + G+ GF G
Sbjct: 393 FLGFIKGITGL--PGFIGG 409
>gnl|CDD|234890 PRK01030, PRK01030, tetrahydromethanopterin S-methyltransferase
subunit C; Provisional.
Length = 264
Score = 28.4 bits (64), Expect = 4.3
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 23/86 (26%)
Query: 53 SKVLTF--IYGLVCLCIAYLAKYLGSVLQASLTIFGVVGG----------------PVLG 94
++++ + GL+ + +AY L S I +V G P +G
Sbjct: 10 NQLMALGIVGGLIGIYLAYFLPVLFSFFGGLGAIAAIVWGANTVRRVASYGLGTGVPSIG 69
Query: 95 VFTLGMTVTFANQQGALAGIVSGLLF 120
+ LGM ALAG+ G
Sbjct: 70 MLALGMGTI-----AALAGVAIGDAL 90
>gnl|CDD|212049 cd11479, SLC5sbd_u3, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 454
Score = 28.3 bits (64), Expect = 4.4
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 35 LYSYSTNRTISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTI-FGVVGGPVL 93
+Y + S+R +LS++ T + G+V + IA + VL A LTI + ++ G +
Sbjct: 334 VYPRFRAKNESERSEVRLSRLFTLLIGVVVIVIAVW---VNDVLAA-LTIAYALLVGGLF 389
Query: 94 GVFTLGMTVTFANQQGALAGIVSG 117
G+ A +GALA IV+G
Sbjct: 390 VPILGGLFWKRATPKGALASIVAG 413
>gnl|CDD|235110 PRK03188, PRK03188, 4-diphosphocytidyl-2-C-methyl-D-erythritol
kinase; Provisional.
Length = 300
Score = 28.3 bits (64), Expect = 4.5
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 11/49 (22%)
Query: 70 LAKYLGSVLQ-ASLTIFGVVGGPVLGVFTLGMTVTFANQQGALAGIVSG 117
LA LG+ LQ A+L++ P +L T+ + GALAGIVSG
Sbjct: 213 LAPLLGNDLQAAALSLR-----P-----SLRRTLRAGEEAGALAGIVSG 251
>gnl|CDD|187610 cd05352, MDH-like_SDR_c, mannitol dehydrogenase (MDH)-like,
classical (c) SDRs. NADP-mannitol dehydrogenase
catalyzes the conversion of fructose to mannitol, an
acyclic 6-carbon sugar. MDH is a tetrameric member of
the SDR family. This subgroup also includes various
other tetrameric SDRs, including Pichia stipitis
D-arabinitol dehydrogenase (aka polyol dehydrogenase),
Candida albicans Sou1p, a sorbose reductase, and Candida
parapsilosis (S)-specific carbonyl reductase (SCR, aka
S-specific alcohol dehydrogenase) which catalyzes the
enantioselective reduction of 2-hydroxyacetophenone into
(S)-1-phenyl-1,2-ethanediol. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRS are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes have a 3-glycine N-terminal
NAD(P)(H)-binding pattern (typically, TGxxxGxG in
classical SDRs and TGxxGxxG in extended SDRs), while
substrate binding is in the C-terminal region. A
critical catalytic Tyr residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering), is often found in a conserved YXXXK pattern.
In addition to the Tyr and Lys, there is often an
upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn
(Asn-107, 15-PGDH numbering) or additional Ser,
contributing to the active site. Substrates for these
enzymes include sugars, steroids, alcohols, and aromatic
compounds. The standard reaction mechanism is a proton
relay involving the conserved Tyr and Lys, as well as
Asn (or Ser).
Length = 252
Score = 28.1 bits (63), Expect = 4.6
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 142 GCPNLVPSLSSILRLD----NSVDNNFIDEDATTIRYTDMSSSQDQYFYLYRI 190
+L SL+ NS+ +ID D T ++ + Y L RI
Sbjct: 166 AVIHLAKSLAVEWAKYFIRVNSISPGYIDTDLTDFVDKELRKKWESYIPLKRI 218
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 28.2 bits (63), Expect = 5.1
Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 5/85 (5%)
Query: 29 LSHCQPLYSYSTNRTISDRRGGQ-----LSKVLTFIYGLVCLCIAYLAKYLGSVLQASLT 83
L P YS R + RR + V+ + L + +L Y+ VL
Sbjct: 339 LRENTPDYSLELRRHGAPRRALRRFLLPTLIVVALPAIIARLLVPFLPWYISIVLIPLAV 398
Query: 84 IFGVVGGPVLGVFTLGMTVTFANQQ 108
I + GVF T+
Sbjct: 399 ILAYLAVKSAGVFMAEDTLVVQAGS 423
>gnl|CDD|183487 PRK12382, PRK12382, putative transporter; Provisional.
Length = 392
Score = 28.1 bits (63), Expect = 5.3
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 56 LTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGP--VLGVFTLGMTVTFANQQGALAG 113
LT++ V L + + ++ L T+ G+ G + V T G A+Q GA
Sbjct: 26 LTYM--TVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRS 83
Query: 114 IVSGLLFCSLVG 125
+ G+L C L G
Sbjct: 84 ALQGMLACGLAG 95
>gnl|CDD|223633 COG0559, LivH, Branched-chain amino acid ABC-type transport system,
permease components [Amino acid transport and
metabolism].
Length = 297
Score = 27.9 bits (63), Expect = 5.4
Identities = 10/51 (19%), Positives = 19/51 (37%)
Query: 180 SQDQYFYLYRISYMYYIVLGFCVTMLVGAIVSRFFDTPSYDVNLLTPWVAA 230
+ L + + + L F +T L+G ++ R P L +A
Sbjct: 55 AVALLGPLGALGLLLALPLAFAITALIGLLIERLVLRPLRGRPALALLIAT 105
>gnl|CDD|115279 pfam06609, TRI12, Fungal trichothecene efflux pump (TRI12). This
family consists of several fungal specific trichothecene
efflux pump proteins. Many of the genes involved in
trichothecene toxin biosynthesis in Fusarium
sporotrichioides are present within a gene cluster.It
has been suggested that TRI12 may play a role in F.
sporotrichioides self-protection against trichothecenes.
Length = 598
Score = 28.1 bits (62), Expect = 5.6
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 44 ISDRRGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGP 91
++DR G + + T I GLV + A ++L A++T+ GV GP
Sbjct: 101 LTDRFGRRPFVIATHIIGLVGAIVGCTANKFNTLL-AAMTLLGVAAGP 147
>gnl|CDD|214406 MTH00028, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 297
Score = 28.1 bits (62), Expect = 5.6
Identities = 29/111 (26%), Positives = 41/111 (36%), Gaps = 34/111 (30%)
Query: 48 RGGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTL--------- 98
RG +L +L FI VCL A+ + S L S+ + V P G+ L
Sbjct: 77 RGLKLG-MLLFILSEVCLFFAFFWAFFHSSLAPSVELGSV--WPPKGIEALDPFAVPLLN 133
Query: 99 -------GMTVTFANQQGALAGIVSGLLFCSLVGFGGPKPAPKKLPSTIEG 142
G TVT+A+ +++G G P K IEG
Sbjct: 134 TTILLSSGATVTWAHH--------------AIIGTGNPASLEKG-TQGIEG 169
>gnl|CDD|223769 COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT)
superfamily [Carbohydrate transport and metabolism /
Amino acid transport and metabolism / General function
prediction only].
Length = 292
Score = 27.9 bits (62), Expect = 5.8
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 56 LTFIYGLVCLCIAYL-----AKYLGSVLQASLTIFGVVGGPVLGVFTLGMTVTFANQQGA 110
L G+ +AYL + LG+ L A L++ V +LGV LG ++ A Q
Sbjct: 216 LLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPA-QLLG 274
Query: 111 LAGIVSGLLFCSL 123
A +V G+L SL
Sbjct: 275 AALVVLGVLLASL 287
>gnl|CDD|212037 cd10327, SLC5sbd_PanF, Na(+)/pantothenate cotransporters: PanF of
Escherichia coli and related proteins; solute binding
domain. PanF catalyzes the Na+-coupled uptake of
extracellular pantothenate for coenzyme A biosynthesis
in cells. This subfamily belongs to the solute carrier 5
(SLC5) transporter family.
Length = 472
Score = 27.9 bits (63), Expect = 6.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 93 LGVFTLGMTVTFANQQGALAGIVSGLLFCSLVGFGGPKP 131
LG+ AN GALA +V GL+ L+ + K
Sbjct: 406 FWPLVLGLYWKRANATGALASMVVGLVSYILITYLKIKI 444
>gnl|CDD|185317 PRK15419, PRK15419, proline:sodium symporter PutP; Provisional.
Length = 502
Score = 28.1 bits (62), Expect = 6.3
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 49 GGQLSKVLTFIYGLVCLCIAYLAKYLGSVLQASLTIFGVVGGPVLGVFTLG 99
G + + TFI G +LA +QASL IF ++ PV+ + ++G
Sbjct: 167 GAAATILYTFIGG-------FLAVSWTDTVQASLMIFALILTPVIVIISVG 210
>gnl|CDD|237132 PRK12539, PRK12539, RNA polymerase sigma factor; Provisional.
Length = 184
Score = 27.4 bits (61), Expect = 7.0
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
Query: 218 SYDV-NLLTPWVAARARRK 235
+YD LTPWV A AR K
Sbjct: 69 TYDPEQPLTPWVYAIARYK 87
>gnl|CDD|114930 pfam06238, Borrelia_lipo_2, Borrelia burgdorferi BBR25 lipoprotein.
This family consists of a number of lipoproteins from
the Lyme disease spirochete Borrelia burgdorferi.
Length = 111
Score = 26.6 bits (58), Expect = 7.3
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 145 NLVPSLSSILRLDNSVDNNFIDEDATTIRY 174
NL+ SL++I + D ++D+N+I+ + I +
Sbjct: 11 NLLSSLTNIAKTDTNIDHNYINTFSKVIDF 40
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 27.6 bits (62), Expect = 8.7
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 52 LSKVLTFIYG---LVCLCIAYLAKYLGSVLQASLTIF---GVVGGPVLGVFTLGMTVTFA 105
L ++ ++ L+ LC+AYL L ++ + ++ V+G P L + +
Sbjct: 211 LKQIFKALFKNDQLLILCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSI----- 265
Query: 106 NQQGALAGIVSGLLFCSLVGFGGPK 130
AG++ LLF LV G K
Sbjct: 266 ---AIGAGLIGVLLFPRLVKKFGRK 287
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.412
Gapped
Lambda K H
0.267 0.0770 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,237,493
Number of extensions: 1363280
Number of successful extensions: 1521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1502
Number of HSP's successfully gapped: 111
Length of query: 285
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 189
Effective length of database: 6,679,618
Effective search space: 1262447802
Effective search space used: 1262447802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)