BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3977
         (99 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WUZ|A Chain A, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
           With Fluconazole In Alternative Conformation
 pdb|2WUZ|B Chain B, X-Ray Structure Of Cyp51 From Trypanosoma Cruzi In Complex
           With Fluconazole In Alternative Conformation
 pdb|2WX2|A Chain A, X-Ray Structure Of Cyp51 From The Human Pathogen
           Trypanosoma Cruzi In Complex With Fluconazole
 pdb|2WX2|B Chain B, X-Ray Structure Of Cyp51 From The Human Pathogen
           Trypanosoma Cruzi In Complex With Fluconazole
          Length = 473

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 5   KELKGGHAPAVKAGGMRITQHKDPHNKSSTTSDEPTNQALKVSTSPPKTTAIAGAPIRGN 64
           ++LK G    +  GG R+T   DPH  S   S  P N+ L         T + G  +   
Sbjct: 47  RDLKSG-VFTISIGGQRVTIVGDPHEHSRFFS--PRNEILSPREVYTIMTPVFGEGVAYA 103

Query: 65  ADYP 68
           A YP
Sbjct: 104 APYP 107


>pdb|3KHM|A Chain A, Crystal Structure Of Sterol 14alpha-Demethylase (Cyp51)
          From Trypanosoma Cruzi In Complex With Inhibitor
          Fluconazole
          Length = 464

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 5  KELKGGHAPAVKAGGMRITQHKDPHNKSSTTSDEPTNQALKVSTSPPKTTAIAGAPIRGN 64
          ++LK G    +  GG R+T   DPH  S   S  P N+ L         T + G  +   
Sbjct: 38 RDLKSG-VFTISIGGQRVTIVGDPHEHSRFFS--PRNEILSPREVYTIMTPVFGEGVAYA 94

Query: 65 ADYP 68
          A YP
Sbjct: 95 APYP 98


>pdb|2R2J|A Chain A, Crystal Structure Of Human Erp44
          Length = 382

 Score = 26.6 bits (57), Expect = 4.0,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 25  HKDPHNKSSTTSDEPTNQALKVSTSPPKTTAIAGAP 60
           H++ H+    T   P  QA  V++SPP+++    AP
Sbjct: 333 HREFHHGPDPTDTAPGEQAQDVASSPPESSFQKLAP 368


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.305    0.123    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,293,239
Number of Sequences: 62578
Number of extensions: 107897
Number of successful extensions: 127
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 122
Number of HSP's gapped (non-prelim): 12
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 45 (21.9 bits)