Query psy3977
Match_columns 99
No_of_seqs 95 out of 97
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 22:07:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3977.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3977hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2og0_A Excisionase; protein-DN 48.5 4.7 0.00016 23.6 0.5 14 12-25 32-45 (52)
2 1pm6_A Excisionase; antiparall 36.6 9.9 0.00034 23.6 0.6 16 12-27 32-47 (72)
3 1fiz_L Beta-acrosin light chai 30.0 13 0.00043 19.3 0.2 7 17-23 19-25 (26)
4 1fiw_L Beta-acrosin light chai 26.7 16 0.00053 18.9 0.2 8 17-24 18-25 (26)
5 2jrb_A ORF 1 protein; RNA bind 15.0 46 0.0016 21.5 0.6 19 58-76 7-25 (88)
6 2kfs_A Conserved hypothetical 9.4 96 0.0033 21.7 0.9 20 7-26 52-71 (148)
7 1z65_A PRPLP, prion-like prote 9.2 35 0.0012 18.1 -1.2 14 7-20 16-29 (30)
8 3soo_A LINE-1 type transposase 7.9 60 0.0021 21.0 -0.7 18 58-75 7-24 (88)
9 1dbf_A Protein (chorismate mut 7.0 2.6E+02 0.0089 19.1 2.2 18 58-75 48-65 (127)
10 3kog_A Putative pore-forming t 6.9 1.3E+02 0.0046 22.9 0.7 8 13-20 78-85 (256)
No 1
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=48.53 E-value=4.7 Score=23.61 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=10.6
Q ss_pred CcccccCceeeccc
Q psy3977 12 APAVKAGGMRITQH 25 (99)
Q Consensus 12 pPAvKAGGmRI~~k 25 (99)
|||+|+|+---+..
T Consensus 32 Pp~~KvGr~wrv~~ 45 (52)
T 2og0_A 32 PPPVKDGREYLFHE 45 (52)
T ss_dssp SCCEEETTEEEEET
T ss_pred CcccccCCEEEEcc
Confidence 49999999755543
No 2
>1pm6_A Excisionase; antiparallel beta-sheet, winged-helix, CIS-trans-trans triproline, gene regulation; NMR {Enterobacteria phage HK022} SCOP: a.6.1.7
Probab=36.55 E-value=9.9 Score=23.63 Aligned_cols=16 Identities=25% Similarity=0.383 Sum_probs=12.4
Q ss_pred CcccccCceeeccccC
Q psy3977 12 APAVKAGGMRITQHKD 27 (99)
Q Consensus 12 pPAvKAGGmRI~~k~~ 27 (99)
|||+|+|+---+....
T Consensus 32 Pp~~KvGr~Wrv~~~a 47 (72)
T 1pm6_A 32 PPPVKDGREYLFHESA 47 (72)
T ss_dssp SCCEECSSSEEEETTC
T ss_pred CchhhcCCEEEECchh
Confidence 5999999987766543
No 3
>1fiz_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NDG FUL BMA PBZ; 2.90A {Sus scrofa} SCOP: b.47.1.2
Probab=29.98 E-value=13 Score=19.29 Aligned_cols=7 Identities=43% Similarity=0.534 Sum_probs=5.9
Q ss_pred cCceeec
Q psy3977 17 AGGMRIT 23 (99)
Q Consensus 17 AGGmRI~ 23 (99)
-|||||+
T Consensus 19 q~~~riv 25 (26)
T 1fiz_L 19 ESGMRXX 25 (26)
T ss_pred ccccccC
Confidence 5899997
No 4
>1fiw_L Beta-acrosin light chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2
Probab=26.69 E-value=16 Score=18.92 Aligned_cols=8 Identities=38% Similarity=0.605 Sum_probs=6.3
Q ss_pred cCceeecc
Q psy3977 17 AGGMRITQ 24 (99)
Q Consensus 17 AGGmRI~~ 24 (99)
-|||||+.
T Consensus 18 q~~~rivG 25 (26)
T 1fiw_L 18 QGGVRXXX 25 (26)
T ss_pred cccccccC
Confidence 58999973
No 5
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=14.98 E-value=46 Score=21.55 Aligned_cols=19 Identities=37% Similarity=0.740 Sum_probs=8.3
Q ss_pred cccccCCCCCChHHHHhhh
Q psy3977 58 GAPIRGNADYPPEAVQSFH 76 (99)
Q Consensus 58 g~~~K~~~dFP~~AvqvaH 76 (99)
|.+..++.||+++.+|..-
T Consensus 7 G~pIrlsaDfSaeTLq~RR 25 (88)
T 2jrb_A 7 GRPIRITPDFSPETMKARR 25 (88)
T ss_dssp ---------CTTTHHHHHH
T ss_pred CceEEEeCCCCHHHHHHHH
Confidence 8888999999999998753
No 6
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=9.40 E-value=96 Score=21.67 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=15.6
Q ss_pred cccCCCcccccCceeecccc
Q psy3977 7 LKGGHAPAVKAGGMRITQHK 26 (99)
Q Consensus 7 lKaGHpPAvKAGGmRI~~k~ 26 (99)
++.|..+|||.||.+.+-..
T Consensus 52 Ir~G~L~AVr~Gr~~rVP~~ 71 (148)
T 2kfs_A 52 LREGHLVAVRRAGGVVIPQV 71 (148)
T ss_dssp HHTTSCCCEEETTEEEEEGG
T ss_pred HHCCCceEEEECCEEEecHH
Confidence 67899999999987655444
No 7
>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic}
Probab=9.20 E-value=35 Score=18.12 Aligned_cols=14 Identities=43% Similarity=0.612 Sum_probs=10.7
Q ss_pred cccCCCcccccCce
Q psy3977 7 LKGGHAPAVKAGGM 20 (99)
Q Consensus 7 lKaGHpPAvKAGGm 20 (99)
|-.+|..+|||-|-
T Consensus 16 LLfs~Ls~vkArgi 29 (30)
T 1z65_A 16 LLASHLSTVKARGI 29 (30)
T ss_dssp HHHHHTTTTCCCSC
T ss_pred HHHhhHHHHHhccC
Confidence 45678899999774
No 8
>3soo_A LINE-1 type transposase domain-containing protein; alpha/beta protein, structural genomics, joint center for ST genomics, JCSG; 2.73A {Homo sapiens} PDB: 2lr6_A
Probab=7.93 E-value=60 Score=20.95 Aligned_cols=18 Identities=22% Similarity=0.219 Sum_probs=14.8
Q ss_pred cccccCCCCCChHHHHhh
Q psy3977 58 GAPIRGNADYPPEAVQSF 75 (99)
Q Consensus 58 g~~~K~~~dFP~~Avqva 75 (99)
|.+..++.||+++..|..
T Consensus 7 G~pIrlsaDfSaeTLq~R 24 (88)
T 3soo_A 7 GAVLTLAADLSSATLDIS 24 (88)
T ss_dssp CCCCCBCTTSSCBCCCBC
T ss_pred CeeEEEeCCCCHHHHHHH
Confidence 788889999999877654
No 9
>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A
Probab=7.03 E-value=2.6e+02 Score=19.07 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.2
Q ss_pred cccccCCCCCChHHHHhh
Q psy3977 58 GAPIRGNADYPPEAVQSF 75 (99)
Q Consensus 58 g~~~K~~~dFP~~Avqva 75 (99)
-+...++..||++|+...
T Consensus 48 T~T~DL~a~FPA~aaR~~ 65 (127)
T 1dbf_A 48 SATPDLHAVFPAKAVREL 65 (127)
T ss_dssp EECTTCCSSCTHHHHHTS
T ss_pred EeCCccCccChHHHHhcc
Confidence 677789999999999853
No 10
>3kog_A Putative pore-forming toxin; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 1.85A {Bacteroides vulgatus atcc 8482}
Probab=6.87 E-value=1.3e+02 Score=22.92 Aligned_cols=8 Identities=63% Similarity=1.024 Sum_probs=0.0
Q ss_pred cccccCce
Q psy3977 13 PAVKAGGM 20 (99)
Q Consensus 13 PAvKAGGm 20 (99)
||+|+|++
T Consensus 78 PALkaGQ~ 85 (256)
T 3kog_A 78 PALKAGQF 85 (256)
T ss_dssp CCBCTTCE
T ss_pred hhhcCCce
Done!