RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3977
         (99 letters)



>gnl|CDD|115285 pfam06615, DUF1147, Protein of unknown function (DUF1147).  This
          family consists of several short Circovirus proteins of
          unknown function.
          Length = 59

 Score = 26.5 bits (58), Expect = 0.82
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 10 GHAPAVKAGGMRITQHKDPH 29
          GH   VKA G+ I Q + PH
Sbjct: 7  GHLGVVKANGLLILQTRKPH 26


>gnl|CDD|216501 pfam01433, Peptidase_M1, Peptidase family M1.  Members of this
           family are aminopeptidases. The members differ widely in
           specificity, hydrolysing acidic, basic or neutral
           N-terminal residues. This family includes leukotriene-A4
           hydrolase, this enzyme also has an aminopeptidase
           activity.
          Length = 390

 Score = 26.9 bits (60), Expect = 1.6
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 23  TQHKDPHNKSSTTS-DEPTNQA---LKVSTSPPKTTAIAGAPIRGNADYPPEAVQSFHEK 78
           TQ +    + +    DEP+ +A   + +   P   TA++  P   +       V +  E 
Sbjct: 128 TQFEPTDARRAFPCFDEPSVKATFDITI-NHPADYTALSNMPEIESEPLDDGRVITEFET 186

Query: 79  PVP 81
              
Sbjct: 187 TPK 189


>gnl|CDD|216980 pfam02335, Cytochrom_C552, Cytochrome c552.  Cytochrome c552
           (cytochrome c nitrite reductase) is a crucial enzyme in
           the nitrogen cycle catalyzing the reduction of nitrite
           to ammonia. The crystal structure of cytochrome c552
           reveals it to be a dimer, with with 10 close-packed type
           c haem groups.
          Length = 383

 Score = 26.8 bits (60), Expect = 2.0
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 11  HAPAVKAGGMRITQHK 26
           H P V+ GG + + HK
Sbjct: 246 HMPYVREGGKKYSDHK 261


>gnl|CDD|165431 PHA03160, PHA03160, hypothetical protein; Provisional.
          Length = 499

 Score = 26.2 bits (57), Expect = 3.2
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 2   SDDKELKGGHAPAVKAGGMRITQHKDPHNKSSTTSDEPTNQALKVSTSPPKTTAIAGAPI 61
           S+      GHAP  +       ++          S +   Q L V  +P +   +A  P+
Sbjct: 385 SNPYSFDPGHAPFFRYAPYGAPKNDHHLLPPLACSQQLPMQPLHVQQAPMQAPHVAPPPM 444

Query: 62  RGNADYPPEAVQSF----HEKPVPSVEKSHHNKPNMIQQP 97
           +      P  + S     +E P PS ++  H   +  Q P
Sbjct: 445 QPPHVQQPRVLPSTDGASNEAPKPSAQEPVHIDASFAQDP 484


>gnl|CDD|200516 cd11255, Sema_3G, The Sema domain, a protein interacting module, of
           semaphorin 3G (Sema3G).  Semaphorin 3G is identified as
           a primarily endothelial cell- expressed class 3
           semaphorin that controls endothelial and smooth muscle
           cell functions in autocrine and paracrine manners,
           respectively. It is mainly expressed in the lung and
           kidney, and a little in the brain. Semaphorins are
           regulatory molecules in the development of the nervous
           system and in axonal guidance. They also play important
           roles in other biological processes, such as
           angiogenesis, immune regulation, respiration systems and
           cancer. The Sema domain is located at the N-terminus and
           contains four disulfide bonds formed by eight conserved
           cysteine residues. It serves as a receptor-recognition
           and -binding module.
          Length = 474

 Score = 25.3 bits (55), Expect = 7.6
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 50  PPKTTAIAGAPIRGNADYPPEAVQ 73
           P K TA  G   R   DYP E +Q
Sbjct: 335 PSKITAQPGRAFRSTKDYPDEVLQ 358


>gnl|CDD|216094 pfam00747, Viral_DNA_bp, ssDNA binding protein.  This protein is
           found in herpesviruses and is needed for replication.
          Length = 1111

 Score = 25.0 bits (55), Expect = 9.0
 Identities = 15/69 (21%), Positives = 26/69 (37%)

Query: 19  GMRITQHKDPHNKSSTTSDEPTNQALKVSTSPPKTTAIAGAPIRGNADYPPEAVQSFHEK 78
           G ++   K     +S          L +  +     A + A I  ++ Y PEA   F E 
Sbjct: 263 GAKLAPDKTYTGFTSQKLSAVEKDELMLVDAVAAELAFSYASIFLDSVYEPEASMDFSEW 322

Query: 79  PVPSVEKSH 87
           P+    ++H
Sbjct: 323 PLFENAETH 331


>gnl|CDD|240415 PTZ00429, PTZ00429, beta-adaptin; Provisional.
          Length = 746

 Score = 24.9 bits (54), Expect = 9.4
 Identities = 15/49 (30%), Positives = 18/49 (36%), Gaps = 6/49 (12%)

Query: 9   GGHAPAVKAGGMRITQHKDPHNK------SSTTSDEPTNQALKVSTSPP 51
           G  AP   A G    QH DP         S+  +  P  QA   S +P 
Sbjct: 652 GTGAPHPVASGSNGAQHADPLGDLFSGLPSTVGASSPAFQAASGSQAPA 700


>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2);
           Provisional.
          Length = 576

 Score = 24.9 bits (54), Expect = 9.5
 Identities = 15/69 (21%), Positives = 26/69 (37%)

Query: 22  ITQHKDPHNKSSTTSDEPTNQALKVSTSPPKTTAIAGAPIRGNADYPPEAVQSFHEKPVP 81
           +   +D  NK+   +    + +    T P             N+D P    +S HE+P  
Sbjct: 443 LDNERDQSNKNKQVNPGNRHNSEDRYTRPHGRNNENRNYNNKNSDIPKHPERSEHEQPED 502

Query: 82  SVEKSHHNK 90
             +KS +N 
Sbjct: 503 KKKKSSNNG 511


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.305    0.123    0.355 

Gapped
Lambda     K      H
   0.267   0.0652    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,714,577
Number of extensions: 350212
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 13
Length of query: 99
Length of database: 10,937,602
Length adjustment: 65
Effective length of query: 34
Effective length of database: 8,054,592
Effective search space: 273856128
Effective search space used: 273856128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 53 (24.4 bits)