BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3978
(243 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3UIW5|RNF10_MOUSE RING finger protein 10 OS=Mus musculus GN=Rnf10 PE=2 SV=2
Length = 804
Score = 173 bits (439), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 78/140 (55%), Positives = 98/140 (70%), Gaps = 1/140 (0%)
Query: 36 HK-YNKEQFLQANCQFVVRLGEDYGIHLGDPDQLVKWEYIQQIRGFGNEDIKCPICLDLP 94
HK +NKE FLQANCQFVV +DY H DPD LV W++++Q+R +E CPICL P
Sbjct: 173 HKPFNKELFLQANCQFVVSEDQDYAAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPP 232
Query: 95 RAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKRARAVNEEV 154
A ++TRCGH FCW CILHYL+LS+K+W KCPICY +VH DLKS + R AV + +
Sbjct: 233 TAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYAVGDTI 292
Query: 155 TFQLMKRERGSTVVSPVAQW 174
T QLMKRE+G V P ++W
Sbjct: 293 TMQLMKREKGVLVALPKSKW 312
>sp|Q08E13|RNF10_BOVIN RING finger protein 10 OS=Bos taurus GN=RNF10 PE=2 SV=1
Length = 810
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 98/140 (70%), Gaps = 1/140 (0%)
Query: 36 HK-YNKEQFLQANCQFVVRLGEDYGIHLGDPDQLVKWEYIQQIRGFGNEDIKCPICLDLP 94
HK +NKE FLQANCQFVV +DY +H DPD LV W++++Q+R +E CPICL P
Sbjct: 173 HKPFNKELFLQANCQFVVSEDQDYTVHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPP 232
Query: 95 RAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKRARAVNEEV 154
A ++TRCGH FCW CILHYL+LS+K+W KCPICY +VH DLKS + R V + +
Sbjct: 233 TAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESRQYVVGDTI 292
Query: 155 TFQLMKRERGSTVVSPVAQW 174
T QLMKRE+G V P ++W
Sbjct: 293 TMQLMKREKGVLVALPKSKW 312
>sp|Q8N5U6|RNF10_HUMAN RING finger protein 10 OS=Homo sapiens GN=RNF10 PE=1 SV=2
Length = 811
Score = 169 bits (428), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 76/140 (54%), Positives = 96/140 (68%), Gaps = 1/140 (0%)
Query: 36 HK-YNKEQFLQANCQFVVRLGEDYGIHLGDPDQLVKWEYIQQIRGFGNEDIKCPICLDLP 94
HK +NKE FLQANCQFVV +DY H DPD LV W++++Q+R +E CPICL P
Sbjct: 173 HKPFNKELFLQANCQFVVSEDQDYTAHFADPDTLVNWDFVEQVRICSHEVPSCPICLYPP 232
Query: 95 RAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKRARAVNEEV 154
A ++TRCGH FCW CILHYL+LS+K+W KCPICY +VH DLKS + V + +
Sbjct: 233 TAAKITRCGHIFCWACILHYLSLSEKTWSKCPICYSSVHKKDLKSVVATESHQYVVGDTI 292
Query: 155 TFQLMKRERGSTVVSPVAQW 174
T QLMKRE+G V P ++W
Sbjct: 293 TMQLMKREKGVLVALPKSKW 312
>sp|Q32NQ8|RNF10_XENLA RING finger protein 10 OS=Xenopus laevis GN=rnf10 PE=2 SV=1
Length = 756
Score = 168 bits (425), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 72/137 (52%), Positives = 96/137 (70%)
Query: 38 YNKEQFLQANCQFVVRLGEDYGIHLGDPDQLVKWEYIQQIRGFGNEDIKCPICLDLPRAP 97
+NKE FLQANCQFVV DY +H DPD LV W++++Q+R F +E CPICL P A
Sbjct: 157 FNKELFLQANCQFVVSDVNDYSVHFTDPDTLVSWDFVEQVRIFSHEVASCPICLYPPVAA 216
Query: 98 QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKRARAVNEEVTFQ 157
++TRCGH FCWPCILHYL+LS+K W +CPICY ++ DLKS + +V +++T Q
Sbjct: 217 KITRCGHIFCWPCILHYLSLSEKDWSRCPICYSSIIKKDLKSVVATETHLYSVGDKITMQ 276
Query: 158 LMKRERGSTVVSPVAQW 174
LM+RE+G V P ++W
Sbjct: 277 LMRREKGVLVAMPKSKW 293
>sp|Q5XI59|RNF10_RAT RING finger protein 10 OS=Rattus norvegicus GN=Rnf10 PE=2 SV=1
Length = 802
Score = 167 bits (423), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 75/140 (53%), Positives = 97/140 (69%), Gaps = 1/140 (0%)
Query: 36 HK-YNKEQFLQANCQFVVRLGEDYGIHLGDPDQLVKWEYIQQIRGFGNEDIKCPICLDLP 94
HK +NKE FLQANCQFVV +DY + DPD LV W++++Q+R +E CPICL P
Sbjct: 173 HKPFNKELFLQANCQFVVSEDQDYTANFADPDTLVNWDFVEQVRICSHEVPSCPICLYPP 232
Query: 95 RAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKRARAVNEEV 154
A ++TRCGH FCW CILHYL+LS+++W KCPICY +VH DLKS + R V + +
Sbjct: 233 TAAKITRCGHIFCWACILHYLSLSERTWSKCPICYSSVHKKDLKSVVATESRQYVVGDTI 292
Query: 155 TFQLMKRERGSTVVSPVAQW 174
T QLMKRE+G V P ++W
Sbjct: 293 TMQLMKREKGVLVALPKSKW 312
>sp|O94271|YORN_SCHPO Uncharacterized RING finger protein P8B7.23 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBP8B7.23 PE=4 SV=1
Length = 673
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 93/204 (45%), Gaps = 32/204 (15%)
Query: 19 SMGYNNFLMQSLASVHKHKYNKEQFLQANCQFVVRLGEDYGIHLGDPDQLVKWEYIQQIR 78
S GYN + S H H +K +++ AN +FVV DY DPD VKWE + Q+
Sbjct: 149 SRGYNTY---GQGSGH-HPMDKSRYVNANYRFVVSPIGDYQSQKLDPDSPVKWEDVWQVL 204
Query: 79 GFGNEDI-KCPICL-DLPRAPQMTRCGHCFCWPCILHYLALSDKS--------------- 121
+ + CP CL + P A +M+RCGH +C+ C+L ++ +
Sbjct: 205 CSSDFQLAACPFCLEEKPVAARMSRCGHVYCFSCLLRFVETPTAAEVKAAETSGTKIVKC 264
Query: 122 -WRKCPICYEAVHLGDLKSFRSVIKRARAVNEE---VTFQLMKRERGSTVVSPVA----- 172
R CPIC++++ L D+ R V + EE V +L +R GS + P +
Sbjct: 265 GHRSCPICWDSIRLRDVHPIRWVEDKEFQKLEEGKSVCLRLYQRNNGSILAFPRSCRSFA 324
Query: 173 -QWDFHPTDMLMNVSAKCNAYIAI 195
FH +D + N + AY I
Sbjct: 325 LDGSFH-SDEIPNFTMSGAAYARI 347
>sp|Q5D7I0|TRIM5_SAISC Tripartite motif-containing protein 5 OS=Saimiri sciureus GN=TRIM5
PE=3 SV=1
Length = 494
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 76 QIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YE 130
+I G E++ CPICL+L P CGH FC CI H ++ + R CP+C Y+
Sbjct: 4 RILGSIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESMLHQGERSCPLCRLPYQ 63
Query: 131 AVHLGDLKSFRSVIKRARAV 150
+ +L + S+++R R V
Sbjct: 64 SENLRPNRHLASIVERLREV 83
>sp|Q5BN31|TRIM5_SAIBB Tripartite motif-containing protein 5 OS=Saimiri boliviensis
boliviensis GN=TRIM5 PE=2 SV=1
Length = 494
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 5/79 (6%)
Query: 77 IRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEA 131
I G E++ CPICL+L P CGH FC CI H ++ + R CP+C Y++
Sbjct: 5 ILGSIKEEVTCPICLELLTEPLSLDCGHSFCQACITANHKESMLHQGERSCPLCRLPYQS 64
Query: 132 VHLGDLKSFRSVIKRARAV 150
+L + S+++R R V
Sbjct: 65 ENLRPNRHLASIVERLREV 83
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 79 GFGNED--IKCPICLDLPRAPQMTRCGHCFCWPCILHYLALS------DKSWRKCPICYE 130
G NE C ICLD P +T CGH FCWPCI +L + D+ CP+C
Sbjct: 34 GQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKS 93
Query: 131 AVHLGDL 137
+ + L
Sbjct: 94 NITITSL 100
>sp|Q1ACD7|TRIM5_NOMLE Tripartite motif-containing protein 5 OS=Nomascus leucogenys
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC C+ H ++ D+ R CP+C Y+ ++
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCRISYQHKNIQPN 70
Query: 138 KSFRSVIKRARAV 150
+ +++++ R V
Sbjct: 71 RHVANIVEKLREV 83
>sp|Q1ACD6|TRIM5_HYLSY Tripartite motif-containing protein 5 OS=Hylobates syndactylus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC C+ H ++ D+ R CP+C Y+ ++
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCRISYQHKNIQPN 70
Query: 138 KSFRSVIKRARAV 150
+ +++++ R V
Sbjct: 71 RHVANIVEKLREV 83
>sp|Q9C030|TRIM6_HUMAN Tripartite motif-containing protein 6 OS=Homo sapiens GN=TRIM6 PE=1
SV=1
Length = 488
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL---HYLALSDKSWRKCPICYEAVHLGDLKS 139
E++ CPICL+L P CGH FC CI + + R CP+C + G+L+
Sbjct: 11 EEVTCPICLELLTEPLSIDCGHSFCQACITPNGRESVIGQEGERSCPVCQTSYQPGNLRP 70
Query: 140 FR---SVIKRARAV 150
R ++++R R V
Sbjct: 71 NRHLANIVRRLREV 84
>sp|Q2YEM8|TRIM5_HOOHO Tripartite motif-containing protein 5 OS=Hoolock hoolock GN=TRIM5
PE=3 SV=1
Length = 494
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC C+ H ++ D+ R CP+C Y+ ++
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKTSMPDEGERSCPVCRISYQHKNIRPN 70
Query: 138 KSFRSVIKRARAV 150
+ +++++ R V
Sbjct: 71 RHVANIVEKLREV 83
>sp|Q5C8T8|TRIM5_PONAB Tripartite motif-containing protein 5 OS=Pongo abelii GN=TRIM5 PE=2
SV=1
Length = 493
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC C+ H + DK R CP+C Y+ ++
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSTLDKGERSCPVCRVSYQPKNIRPN 70
Query: 138 KSFRSVIKRARAV 150
+ +++++ R V
Sbjct: 71 RHVANIVEKLREV 83
>sp|Q2YEM9|TRIM5_PONPY Tripartite motif-containing protein 5 OS=Pongo pygmaeus GN=TRIM5
PE=2 SV=1
Length = 493
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC C+ H + DK R CP+C Y+ ++
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSTLDKGERSCPVCRVSYQPKNIRPN 70
Query: 138 KSFRSVIKRARAV 150
+ +++++ R V
Sbjct: 71 RHVANIVEKLREV 83
>sp|Q5D7I2|TRIM5_PITPI Tripartite motif-containing protein 5 OS=Pithecia pithecia GN=TRIM5
PE=3 SV=1
Length = 494
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC CI H ++ + R CP+C Y + +L
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSFCQACITANHKKSMLHQGERSCPLCRISYPSENLRPN 70
Query: 138 KSFRSVIKRARAV 150
+ ++++R R V
Sbjct: 71 RHLANIVERLREV 83
>sp|P87176|SLX8_SCHPO E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=slx8 PE=1 SV=1
Length = 269
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133
D KC ICLD P T CGH FC CIL L + + +KCP+C VH
Sbjct: 203 DYKCVICLDSPENLSCTPCGHIFCNFCILSALGTT-AATQKCPVCRRKVH 251
>sp|P40072|SLX8_YEAST E3 ubiquitin-protein ligase complex SLX5-SLX8 subunit SLX8
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SLX8 PE=1 SV=1
Length = 274
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSD--KSWRKCPICYEAVHLGDLK 138
D +CPIC + P MT CGH FC PC+ + S + + C +C V+L D++
Sbjct: 203 DYRCPICFEPPETALMTLCGHVFCCPCLFQMVNSSRTCRQFGHCALCRSKVYLKDVR 259
>sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPCC548.05c PE=4 SV=1
Length = 468
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 65 PDQLVKWEYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRK 124
PD E Q+I+ + ++CPIC + + P T CGH +C+ C+L++L K +
Sbjct: 67 PDTKTLLETFQKIK----KTLECPICTEALQRPFTTHCGHTYCYECLLNWL----KESKS 118
Query: 125 CPICYEAVH 133
CP C + ++
Sbjct: 119 CPTCRQKLY 127
>sp|Q5D7H7|TRIM5_LAGLA Tripartite motif-containing protein 5 OS=Lagothrix lagotricha
GN=TRIM5 PE=3 SV=1
Length = 547
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICLDL P CGH FC CI H + + R CP+C Y++ +L
Sbjct: 11 EEVTCPICLDLLTEPLSLDCGHSFCQACITADHKESTLHQGERSCPLCRVGYQSENLRPN 70
Query: 138 KSFRSVIKRARAV 150
+ ++ +R R V
Sbjct: 71 RHLANIAERLREV 83
>sp|Q06436|MAG2_YEAST RING-finger protein MAG2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MAG2 PE=1 SV=1
Length = 670
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 69/160 (43%), Gaps = 25/160 (15%)
Query: 33 VHKHKYNKEQFLQANCQFVVRLGEDYGIHLGDPDQLVKWEYIQQIRGFGNEDIKCPICL- 91
VH H + F+ N + +V DY +P+ V E I +R + C ICL
Sbjct: 146 VHLHG---DTFVNVNYRLLVDDRFDYPEQNCNPNVPVDQEKI--LRVIVPKGQNCSICLS 200
Query: 92 DLPRAPQMTRCGHCFCWPCILHYLALSD------------KSWRKCPICYEAVHLGDLKS 139
+ P AP+M CGH FC C+L++ ++ + K +++CP+C + +K
Sbjct: 201 EEPVAPRMVTCGHIFCLSCLLNFFSIEETVKNKETGYSKKKKYKECPLCGSIIGPKRVKP 260
Query: 140 FR-------SVIKRARAVNEEVTFQLMKRERGSTVVSPVA 172
+ + + V QLM + GS + PVA
Sbjct: 261 VLYEDDFDVTRLNQKPEPGATVHLQLMCKPHGSLLPLPVA 300
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 10/79 (12%)
Query: 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSW-------RKCPICYEAVHL 134
+ + C ICLD + P +T CGH FCWPCI +L + S R+CP+C V
Sbjct: 43 DSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSH 102
Query: 135 GDLKSFRSVIKRARAVNEE 153
L + R R +E
Sbjct: 103 STLV---PLYGRGRCTTQE 118
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWR------------KCPICYEA 131
D C ICLD R P +T CGH FCWPCI + S+ S + KCP+C
Sbjct: 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSD 77
Query: 132 VHLGDL 137
V L
Sbjct: 78 VSEATL 83
>sp|Q5D7H8|TRIM5_CALDO Tripartite motif-containing protein 5 OS=Callicebus donacophilus
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC CI H + + R CP+C Y + +L
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSFCQACITANHKESTLHQGERSCPLCRISYPSENLRPN 70
Query: 138 KSFRSVIKRARAV 150
+ ++++R R V
Sbjct: 71 RHLANIVERLREV 83
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 69 VKWEYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
V+ E +Q + + ++CPICL+L + P T+C H FC C+L L K +CP+C
Sbjct: 6 VRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCRFCMLKLLN-QKKGPSQCPLC 64
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 48.5 bits (114), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 69 VKWEYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
V+ E +Q + + ++CPICL+L + P T+C H FC C+L L K +CP+C
Sbjct: 6 VRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPSQCPLC 64
>sp|Q5D7J1|TRIM5_PANTR Tripartite motif-containing protein 5 OS=Pan troglodytes GN=TRIM5
PE=2 SV=1
Length = 493
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC C+ H ++ DK CP+C Y+ ++
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 70
Query: 138 KSFRSVIKRARAV 150
+ +++++ R V
Sbjct: 71 RHVANIVEKLREV 83
>sp|Q9C035|TRIM5_HUMAN Tripartite motif-containing protein 5 OS=Homo sapiens GN=TRIM5 PE=1
SV=1
Length = 493
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC C+ H ++ DK CP+C Y+ ++
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 70
Query: 138 KSFRSVIKRARAV 150
+ +++++ R V
Sbjct: 71 RHVANIVEKLREV 83
>sp|Q1ACD8|TRIM5_PANPA Tripartite motif-containing protein 5 OS=Pan paniscus GN=TRIM5 PE=3
SV=1
Length = 493
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC C+ H ++ DK CP+C Y+ ++
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPN 70
Query: 138 KSFRSVIKRARAV 150
+ +++++ R V
Sbjct: 71 RHVANIVEKLREV 83
>sp|Q9FF61|SM3L1_ARATH Putative SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin subfamily A member 3-like 1
OS=Arabidopsis thaliana GN=At5g05130 PE=2 SV=1
Length = 881
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137
ED CPIC+ P +TRC H FC CIL L +S CP+C ++ DL
Sbjct: 631 EDFDCPICISPPTNIIITRCAHIFCRACILQTL---QRSKPLCPLCRGSLTQSDL 682
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 65 PDQLVKW--EYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSW 122
P++L K E ++ I G+ D +C ICLD P +T C H FC PCI + S++
Sbjct: 731 PEELRKMLIEKMKIILSSGS-DEECAICLDSLTFPVITHCAHVFCKPCICQVIH-SEQPH 788
Query: 123 RKCPICYEAVHLGDL 137
KCP+C +H +L
Sbjct: 789 AKCPLCRNEIHGDNL 803
>sp|Q5C8T6|TRIM5_GORGO Tripartite motif-containing protein 5 OS=Gorilla gorilla gorilla
GN=TRIM5 PE=2 SV=1
Length = 493
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC C+ H ++ DK CP+C Y+ ++
Sbjct: 11 EEVTCPICLELLTQPLSLDCGHSFCQACLTANHEKSMLDKGESSCPVCRISYQPENIRPN 70
Query: 138 KSFRSVIKRARAV 150
+ +++++ R V
Sbjct: 71 RHVANIVEKLREV 83
>sp|Q5D7I1|TRIM5_ATEGE Tripartite motif-containing protein 5 OS=Ateles geoffroyi GN=TRIM5
PE=2 SV=1
Length = 547
Score = 48.1 bits (113), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC CI H + + R CP+C Y++ +L
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSFCQACITANHKESTLHQGERSCPLCRVSYQSENLRPN 70
Query: 138 KSFRSVIKRARAV 150
+ ++ +R R V
Sbjct: 71 RHLANIAERLREV 83
>sp|Q5D7I6|TRIM5_ALOSA Tripartite motif-containing protein 5 OS=Alouatta sara GN=TRIM5
PE=3 SV=1
Length = 551
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRS 142
E++ CPICL+L P CGH FC CI S + R CP+C + H +L+ R
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSFCQACITANHKESRE--RSCPLCRVSYHSENLRPNRH 68
Query: 143 VIKRARAVNE 152
+ A + E
Sbjct: 69 LANIAERLRE 78
>sp|Q1ACD5|TRIM5_SAGOE Tripartite motif-containing protein 5 OS=Saguinus oedipus GN=TRIM5
PE=3 SV=1
Length = 494
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC CI H + + R CP+C Y + +L
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSFCQACITANHKESTPHQGERSCPLCRMSYPSENLRPN 70
Query: 138 KSFRSVIKRARAVNEEVTFQLMKRERGSTV 167
+ ++++R + V ++ E+G V
Sbjct: 71 RHLANIVERLKEV-------MLSPEKGQKV 93
>sp|Q5C8U1|TRIM5_SAGLB Tripartite motif-containing protein 5 OS=Saguinus labiatus GN=TRIM5
PE=2 SV=1
Length = 494
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC CI H + + R CP+C Y + +L
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSFCQACITANHKESTPHQGERSCPLCRMSYPSENLRPN 70
Query: 138 KSFRSVIKRARAV 150
+ ++++R + V
Sbjct: 71 RHLANIVERLKEV 83
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 47.4 bits (111), Expect = 8e-05, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 72 EYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
E +Q + + ++CPICL+L + P T+C H FC C+L L K +CP+C
Sbjct: 9 EEVQNVLNAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPSQCPLC 64
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137
D +C ICLD P +T C H FC PCI + +++ KCP+C +H +L
Sbjct: 757 DEECAICLDSLTVPVITHCAHVFCKPCICQVIQ-NEQPHAKCPLCRNDIHEDNL 809
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 47.4 bits (111), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 69 VKWEYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
++ E +Q + + ++CPICL+L + P T+C H FC C+L L K +CP+C
Sbjct: 6 LRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPSQCPLC 64
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 69 VKWEYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
++ E +Q + + ++CPICL+L + P T+C H FC C+L L K +CP+C
Sbjct: 6 LRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPSQCPLC 64
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 69 VKWEYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
++ E +Q + + ++CPICL+L + P T+C H FC C+L L K +CP+C
Sbjct: 6 LRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QKKGPSQCPLC 64
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 72 EYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
E +Q + + ++CPICL+L + P T+C H FC C+L L K +CP+C
Sbjct: 9 EEVQNVLNAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLN-QRKGPSQCPLC 64
>sp|Q5D7I5|TRIM5_CALPY Tripartite motif-containing protein 5 OS=Callithrix pygmaea
GN=TRIM5 PE=3 SV=1
Length = 494
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL--HYLALSDKSWRKCPIC---YEAVHLGDL 137
E++ CPICL+L P CGH FC CI H + + R CP+C Y + +L
Sbjct: 11 EEVTCPICLELLTEPLSLDCGHSFCQACITANHKESTLHQGERSCPLCRMSYPSENLRPN 70
Query: 138 KSFRSVIKRARAV 150
+ ++++R + V
Sbjct: 71 RHLANIVERLKEV 83
>sp|Q99PQ1|TR12A_MOUSE Tripartite motif-containing protein 12A OS=Mus musculus GN=Trim12a
PE=2 SV=1
Length = 284
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLA--LSDKSWRKCPICYEAVHLGDLKSF 140
E++ CP+CL+L P CGH FC CI Y DK CP+C + +L+
Sbjct: 11 EEVTCPVCLNLMVKPVSADCGHTFCQGCITLYFESIKCDKKVFICPVCRISYQFSNLRPN 70
Query: 141 RSV 143
R+V
Sbjct: 71 RNV 73
>sp|Q9BZY9|TRI31_HUMAN E3 ubiquitin-protein ligase TRIM31 OS=Homo sapiens GN=TRIM31 PE=1
SV=2
Length = 425
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRS 142
E++ CPICLD+ + P CGH FC CI + + + KCP+C +V ++ F S
Sbjct: 12 EEVICPICLDILQKPVTIDCGHNFCLKCITQ-IGETSCGFFKCPLCKTSVRKNAIR-FNS 69
Query: 143 VIK 145
+++
Sbjct: 70 LLR 72
>sp|Q8BGE7|TRIM6_MOUSE Tripartite motif-containing protein 6 OS=Mus musculus GN=Trim6 PE=2
SV=1
Length = 488
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCIL---HYLALSDKSWRKCPICYEAVHLGDLKS 139
+++ CPICL+L P CGH FC CI+ + CP+C + G+L+
Sbjct: 11 DEVTCPICLELLTEPLSIDCGHSFCQVCIIGNSNNSVFGQGGRSSCPVCRTSYQPGNLRP 70
Query: 140 FR---SVIKRARAV 150
R +++KR R V
Sbjct: 71 NRHLAAIVKRLREV 84
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 68 LVKWEYIQ-QIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLAL-------SD 119
L KW+ + ++ + C ICLD P +T CGH +CWPCI ++ SD
Sbjct: 21 LGKWKSMNDEVEENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSD 80
Query: 120 KSWRKCPICYEAV 132
+ +CP+C V
Sbjct: 81 QQQPQCPVCKAEV 93
>sp|Q9R1A8|RFWD2_MOUSE E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1
SV=2
Length = 733
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
D CPIC D+ MT+CGH FC+ CI + +L D + +CP C
Sbjct: 135 DFVCPICFDMIEEAYMTKCGHSFCYKCI--HQSLEDNN--RCPKC 175
>sp|Q336R3|BRE1B_ORYSJ E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp.
japonica GN=BRE1B PE=2 SV=1
Length = 844
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 85 IKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
+KC +C D P+ +T+C H FC PCI L + RKCP C
Sbjct: 790 LKCGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRH---RKCPGC 830
>sp|A2ZAC2|BRE1B_ORYSI E3 ubiquitin-protein ligase BRE1-like 2 OS=Oryza sativa subsp.
indica GN=BRE1B PE=3 SV=2
Length = 844
Score = 46.2 bits (108), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 85 IKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
+KC +C D P+ +T+C H FC PCI L + RKCP C
Sbjct: 790 LKCGVCFDRPKEVVITKCFHLFCSPCIQRNLEIRH---RKCPGC 830
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,386,389
Number of Sequences: 539616
Number of extensions: 3503250
Number of successful extensions: 10806
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 262
Number of HSP's that attempted gapping in prelim test: 10323
Number of HSP's gapped (non-prelim): 674
length of query: 243
length of database: 191,569,459
effective HSP length: 114
effective length of query: 129
effective length of database: 130,053,235
effective search space: 16776867315
effective search space used: 16776867315
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)