Query psy3978
Match_columns 243
No_of_seqs 302 out of 1832
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 22:09:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3978.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3978hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2164|consensus 99.8 1.2E-19 2.6E-24 165.8 5.0 116 41-164 146-262 (513)
2 PF15227 zf-C3HC4_4: zinc fing 99.5 4.2E-14 9.2E-19 89.0 3.1 42 87-128 1-42 (42)
3 PLN03208 E3 ubiquitin-protein 99.4 3E-13 6.6E-18 111.1 4.4 63 81-143 15-89 (193)
4 KOG0823|consensus 99.4 2.6E-13 5.7E-18 113.4 3.3 63 81-144 44-106 (230)
5 smart00504 Ubox Modified RING 99.3 4.6E-12 1E-16 86.4 5.8 58 84-145 1-58 (63)
6 KOG0317|consensus 99.2 5.5E-12 1.2E-16 108.5 3.4 53 81-137 236-288 (293)
7 KOG0287|consensus 99.2 3.3E-12 7.2E-17 111.7 1.2 62 81-146 20-81 (442)
8 PF13923 zf-C3HC4_2: Zinc fing 99.2 1.2E-11 2.5E-16 76.7 3.1 38 87-128 1-39 (39)
9 PF04564 U-box: U-box domain; 99.1 4.8E-11 1E-15 84.2 4.1 62 82-146 2-63 (73)
10 TIGR00599 rad18 DNA repair pro 99.1 4E-11 8.6E-16 109.3 4.5 61 81-145 23-83 (397)
11 PF13920 zf-C3HC4_3: Zinc fing 99.1 6.7E-11 1.5E-15 77.2 3.5 47 83-133 1-48 (50)
12 KOG0320|consensus 99.1 4.2E-11 9.1E-16 96.3 2.9 55 82-140 129-185 (187)
13 PF13639 zf-RING_2: Ring finge 99.1 4.1E-11 8.8E-16 76.1 2.2 40 86-129 2-44 (44)
14 PF00097 zf-C3HC4: Zinc finger 99.1 1.7E-10 3.7E-15 72.0 3.7 40 87-128 1-41 (41)
15 PHA02929 N1R/p28-like protein; 99.0 1.5E-10 3.2E-15 98.9 4.3 48 82-133 172-227 (238)
16 PF13445 zf-RING_UBOX: RING-ty 99.0 1.8E-10 4E-15 72.6 2.9 39 87-126 1-43 (43)
17 PF14835 zf-RING_6: zf-RING of 99.0 5.1E-11 1.1E-15 80.4 -0.8 58 82-145 5-63 (65)
18 PHA02926 zinc finger-like prot 98.9 9.6E-10 2.1E-14 91.7 3.7 53 81-133 167-230 (242)
19 cd00162 RING RING-finger (Real 98.9 1.9E-09 4.1E-14 67.6 4.0 44 86-132 1-45 (45)
20 COG5574 PEX10 RING-finger-cont 98.9 1.2E-09 2.5E-14 93.2 2.8 53 82-137 213-266 (271)
21 COG5432 RAD18 RING-finger-cont 98.8 1.5E-09 3.2E-14 93.6 2.4 60 81-144 22-81 (391)
22 smart00184 RING Ring finger. E 98.8 4.8E-09 1E-13 63.4 4.0 39 87-128 1-39 (39)
23 KOG2177|consensus 98.8 2.5E-09 5.3E-14 92.8 3.7 94 81-180 10-120 (386)
24 PF14634 zf-RING_5: zinc-RING 98.8 5.4E-09 1.2E-13 66.3 2.9 41 86-130 1-44 (44)
25 PF12678 zf-rbx1: RING-H2 zinc 98.7 3.1E-09 6.6E-14 74.9 1.2 40 86-129 21-73 (73)
26 KOG0978|consensus 98.6 8.8E-09 1.9E-13 99.0 1.4 58 81-141 640-697 (698)
27 TIGR00570 cdk7 CDK-activating 98.5 6.6E-08 1.4E-12 85.2 4.1 57 83-142 2-63 (309)
28 KOG4628|consensus 98.4 1.5E-07 3.2E-12 84.2 2.8 47 86-135 231-280 (348)
29 COG5243 HRD1 HRD ubiquitin lig 98.4 2.1E-07 4.5E-12 82.9 3.4 49 81-133 284-345 (491)
30 PF12861 zf-Apc11: Anaphase-pr 98.4 3.5E-07 7.7E-12 65.6 3.8 50 84-134 21-83 (85)
31 COG5540 RING-finger-containing 98.3 5.2E-07 1.1E-11 78.4 4.9 50 82-134 321-373 (374)
32 KOG0802|consensus 98.3 3.4E-07 7.5E-12 87.7 2.4 49 82-134 289-342 (543)
33 KOG0311|consensus 98.2 1.1E-07 2.3E-12 84.2 -2.1 51 81-134 40-91 (381)
34 KOG0824|consensus 98.2 1.2E-06 2.6E-11 76.2 2.9 49 84-135 7-55 (324)
35 PF11789 zf-Nse: Zinc-finger o 98.0 2.7E-06 5.8E-11 57.0 2.1 45 81-127 8-53 (57)
36 KOG4159|consensus 98.0 2.4E-06 5.3E-11 78.2 2.3 50 81-134 81-130 (398)
37 KOG2660|consensus 98.0 2.3E-06 5E-11 75.4 2.0 62 81-146 12-78 (331)
38 KOG4172|consensus 98.0 1.1E-06 2.4E-11 57.2 -0.2 46 85-133 8-54 (62)
39 KOG2879|consensus 98.0 5.8E-06 1.3E-10 71.1 3.5 51 81-133 236-287 (298)
40 COG5222 Uncharacterized conser 98.0 4.9E-06 1.1E-10 72.4 2.9 79 46-130 226-318 (427)
41 COG5152 Uncharacterized conser 97.8 8.2E-06 1.8E-10 67.1 1.0 46 84-133 196-241 (259)
42 KOG4692|consensus 97.7 8.5E-06 1.8E-10 72.4 -0.5 52 79-134 417-468 (489)
43 KOG1002|consensus 97.7 2.3E-06 5E-11 79.4 -4.2 96 81-176 533-649 (791)
44 KOG0804|consensus 97.6 2E-05 4.4E-10 72.0 0.8 47 81-133 172-222 (493)
45 KOG0297|consensus 97.6 3.3E-05 7.2E-10 71.2 2.0 55 81-139 18-73 (391)
46 KOG1645|consensus 97.5 2.3E-05 5E-10 70.8 0.4 60 83-144 3-67 (463)
47 KOG1813|consensus 97.5 3.1E-05 6.8E-10 67.3 0.8 46 84-133 241-286 (313)
48 KOG4265|consensus 97.3 0.00018 3.9E-09 64.3 3.3 48 82-133 288-336 (349)
49 smart00744 RINGv The RING-vari 97.3 0.00039 8.5E-09 45.0 3.9 42 86-129 1-49 (49)
50 KOG0828|consensus 97.3 0.00016 3.4E-09 67.0 2.5 49 82-133 569-634 (636)
51 PF11793 FANCL_C: FANCL C-term 97.1 7.5E-05 1.6E-09 52.1 -0.7 50 84-133 2-66 (70)
52 KOG1785|consensus 97.1 0.00021 4.6E-09 64.6 1.5 48 85-134 370-417 (563)
53 KOG1039|consensus 97.1 0.00031 6.6E-09 63.4 2.4 52 82-133 159-221 (344)
54 KOG0827|consensus 97.0 0.00032 6.9E-09 63.2 1.9 90 86-177 6-99 (465)
55 COG5194 APC11 Component of SCF 97.0 0.00083 1.8E-08 47.3 3.3 29 101-133 53-81 (88)
56 KOG1734|consensus 96.8 0.00028 6E-09 60.8 -0.2 56 82-139 222-287 (328)
57 COG5219 Uncharacterized conser 96.6 0.00059 1.3E-08 67.6 0.5 51 81-133 1466-1523(1525)
58 KOG4367|consensus 96.6 0.0012 2.6E-08 60.5 2.1 37 82-118 2-38 (699)
59 KOG3039|consensus 96.5 0.002 4.2E-08 55.0 2.8 54 82-139 219-276 (303)
60 KOG4275|consensus 96.5 0.00043 9.4E-09 60.3 -1.1 42 84-133 300-342 (350)
61 KOG1493|consensus 96.5 0.0011 2.5E-08 46.3 1.1 47 86-133 22-81 (84)
62 KOG1001|consensus 96.5 0.00067 1.5E-08 66.5 -0.1 49 85-136 455-503 (674)
63 KOG0825|consensus 96.3 0.00086 1.9E-08 65.3 -0.3 49 82-134 121-172 (1134)
64 KOG1571|consensus 96.3 0.0022 4.7E-08 57.5 2.0 45 82-133 303-347 (355)
65 PF14447 Prok-RING_4: Prokaryo 96.1 0.0035 7.7E-08 41.2 1.6 48 83-136 6-53 (55)
66 KOG4185|consensus 96.0 0.0041 8.8E-08 55.1 2.5 46 84-132 3-54 (296)
67 PF04641 Rtf2: Rtf2 RING-finge 96.0 0.0071 1.5E-07 52.8 3.7 54 81-139 110-167 (260)
68 PF05290 Baculo_IE-1: Baculovi 95.9 0.0095 2.1E-07 46.2 3.5 53 82-135 78-134 (140)
69 KOG0826|consensus 95.8 0.0077 1.7E-07 53.4 3.0 49 81-133 297-346 (357)
70 KOG3800|consensus 95.8 0.0077 1.7E-07 52.6 2.9 51 86-139 2-57 (300)
71 PF07800 DUF1644: Protein of u 95.7 0.013 2.8E-07 46.9 3.9 35 83-117 1-48 (162)
72 PF14570 zf-RING_4: RING/Ubox 95.6 0.0065 1.4E-07 39.0 1.5 43 87-132 1-47 (48)
73 KOG2930|consensus 95.6 0.0088 1.9E-07 44.3 2.3 27 101-131 80-106 (114)
74 KOG1941|consensus 95.3 0.0076 1.6E-07 54.7 1.2 48 82-131 363-414 (518)
75 KOG4739|consensus 95.0 0.0075 1.6E-07 51.4 0.3 49 85-139 4-54 (233)
76 KOG4362|consensus 94.7 0.0059 1.3E-07 59.3 -1.2 62 76-138 13-74 (684)
77 COG5236 Uncharacterized conser 94.5 0.084 1.8E-06 47.4 5.8 49 81-131 58-106 (493)
78 KOG3161|consensus 94.4 0.015 3.2E-07 55.9 0.8 38 83-126 10-51 (861)
79 KOG1814|consensus 94.4 0.022 4.8E-07 52.0 1.9 49 81-129 181-236 (445)
80 KOG3002|consensus 94.3 0.033 7.2E-07 49.5 2.8 46 81-133 45-91 (299)
81 KOG2817|consensus 94.0 0.038 8.3E-07 50.3 2.7 52 81-133 331-385 (394)
82 PF02891 zf-MIZ: MIZ/SP-RING z 93.8 0.024 5.3E-07 36.7 0.7 46 85-131 3-50 (50)
83 PF10367 Vps39_2: Vacuolar sor 93.6 0.027 5.8E-07 41.8 0.7 33 80-112 74-108 (109)
84 PHA03096 p28-like protein; Pro 93.5 0.044 9.6E-07 48.4 2.1 45 85-130 179-231 (284)
85 KOG4445|consensus 93.5 0.022 4.7E-07 50.1 0.1 53 82-134 113-187 (368)
86 COG5175 MOT2 Transcriptional r 92.6 0.09 2E-06 47.1 2.6 52 84-138 14-69 (480)
87 KOG2932|consensus 92.6 0.039 8.5E-07 48.7 0.3 43 84-132 90-133 (389)
88 COG5220 TFB3 Cdk activating ki 92.4 0.042 9.2E-07 46.8 0.3 50 83-135 9-66 (314)
89 KOG2114|consensus 92.2 0.082 1.8E-06 52.4 2.0 39 85-130 841-880 (933)
90 KOG3039|consensus 92.1 0.12 2.7E-06 44.3 2.8 38 81-118 40-77 (303)
91 KOG0298|consensus 91.9 0.04 8.6E-07 56.8 -0.5 48 81-132 1150-1198(1394)
92 PF05883 Baculo_RING: Baculovi 91.2 0.09 1.9E-06 41.1 0.9 35 84-118 26-69 (134)
93 PF08746 zf-RING-like: RING-li 91.2 0.21 4.5E-06 31.2 2.4 40 87-128 1-43 (43)
94 KOG1428|consensus 90.9 0.19 4.2E-06 52.7 3.1 56 82-137 3484-3548(3738)
95 PHA02825 LAP/PHD finger-like p 90.3 0.41 8.9E-06 38.5 3.9 50 81-133 5-59 (162)
96 KOG3970|consensus 90.0 0.32 6.8E-06 41.3 3.2 52 83-134 49-106 (299)
97 PF10272 Tmpp129: Putative tra 89.2 0.28 6.1E-06 44.7 2.5 36 102-137 311-355 (358)
98 KOG1940|consensus 88.4 0.29 6.4E-06 42.9 2.0 45 82-130 156-204 (276)
99 KOG3579|consensus 88.1 0.31 6.6E-06 42.7 1.9 39 81-119 265-307 (352)
100 KOG3899|consensus 87.7 0.31 6.7E-06 42.9 1.7 37 102-138 325-370 (381)
101 PF12906 RINGv: RING-variant d 87.6 0.35 7.6E-06 30.8 1.5 40 87-128 1-47 (47)
102 KOG1952|consensus 87.1 1.3 2.7E-05 44.4 5.6 51 80-130 187-244 (950)
103 COG5109 Uncharacterized conser 86.9 0.38 8.3E-06 42.7 1.8 50 81-131 333-385 (396)
104 KOG1812|consensus 86.9 0.34 7.4E-06 44.7 1.6 54 83-136 145-206 (384)
105 PF03854 zf-P11: P-11 zinc fin 84.8 0.29 6.2E-06 31.2 0.0 34 97-134 13-47 (50)
106 KOG3268|consensus 84.4 0.92 2E-05 37.2 2.8 53 82-134 163-229 (234)
107 PHA02862 5L protein; Provision 84.3 1.2 2.6E-05 35.3 3.2 47 85-134 3-54 (156)
108 KOG1815|consensus 83.9 0.76 1.7E-05 43.2 2.5 54 82-135 68-128 (444)
109 KOG2169|consensus 83.6 1.5 3.2E-05 43.2 4.4 90 83-173 305-395 (636)
110 KOG1100|consensus 82.4 0.49 1.1E-05 39.9 0.5 39 87-133 161-200 (207)
111 COG3813 Uncharacterized protei 80.4 1.8 3.8E-05 30.1 2.5 36 103-144 28-63 (84)
112 PF06906 DUF1272: Protein of u 77.7 2.4 5.3E-05 28.0 2.5 46 86-137 7-56 (57)
113 PF07191 zinc-ribbons_6: zinc- 77.4 0.063 1.4E-06 37.2 -5.3 41 84-133 1-41 (70)
114 KOG2034|consensus 76.0 1.7 3.7E-05 43.7 2.0 36 81-116 814-851 (911)
115 KOG3113|consensus 75.4 3.1 6.6E-05 36.0 3.2 50 82-137 109-162 (293)
116 PF10571 UPF0547: Uncharacteri 70.7 2.4 5.2E-05 23.5 1.0 21 86-106 2-24 (26)
117 PF05605 zf-Di19: Drought indu 70.5 1.9 4.2E-05 28.0 0.7 40 83-131 1-40 (54)
118 TIGR01562 FdhE formate dehydro 68.8 1.1 2.3E-05 40.1 -1.1 43 84-130 184-232 (305)
119 KOG2979|consensus 67.7 2.6 5.7E-05 36.5 1.1 46 82-129 174-220 (262)
120 KOG0825|consensus 65.6 3.6 7.7E-05 41.1 1.7 50 83-132 95-153 (1134)
121 PF04216 FdhE: Protein involve 65.0 0.67 1.4E-05 41.0 -3.2 45 83-131 171-220 (290)
122 PF06844 DUF1244: Protein of u 63.4 5.1 0.00011 27.4 1.6 14 105-118 11-24 (68)
123 KOG1812|consensus 61.2 4 8.7E-05 37.7 1.1 43 82-128 304-351 (384)
124 PRK03564 formate dehydrogenase 58.9 3 6.5E-05 37.3 -0.1 44 83-130 186-234 (309)
125 KOG4718|consensus 56.1 6 0.00013 33.4 1.2 44 84-131 181-225 (235)
126 COG5183 SSM4 Protein involved 54.4 11 0.00024 37.9 2.9 51 82-134 10-67 (1175)
127 smart00064 FYVE Protein presen 54.3 11 0.00024 25.3 2.1 33 84-116 10-46 (68)
128 KOG2068|consensus 53.0 12 0.00025 33.7 2.6 47 84-134 249-299 (327)
129 PF14446 Prok-RING_1: Prokaryo 52.8 17 0.00038 23.8 2.7 30 83-112 4-37 (54)
130 PF14353 CpXC: CpXC protein 52.8 9.3 0.0002 29.3 1.7 49 85-134 2-50 (128)
131 PF10497 zf-4CXXC_R1: Zinc-fin 51.0 23 0.00049 26.5 3.5 30 103-132 37-71 (105)
132 KOG2231|consensus 50.3 13 0.00029 36.7 2.7 49 86-134 2-53 (669)
133 cd00065 FYVE FYVE domain; Zinc 49.7 11 0.00025 24.2 1.6 32 85-116 3-38 (57)
134 PF07975 C1_4: TFIIH C1-like d 48.5 11 0.00024 24.4 1.3 25 101-129 26-50 (51)
135 KOG0309|consensus 46.5 11 0.00024 37.6 1.6 24 100-127 1046-1069(1081)
136 KOG3842|consensus 45.8 17 0.00037 32.6 2.4 51 82-133 339-414 (429)
137 PF01363 FYVE: FYVE zinc finge 45.3 3.3 7.2E-05 28.0 -1.7 30 83-112 8-41 (69)
138 PF04710 Pellino: Pellino; In 43.3 7.9 0.00017 35.7 0.0 49 81-132 274-338 (416)
139 PF10235 Cript: Microtubule-as 42.8 18 0.00038 26.4 1.8 37 84-133 44-80 (90)
140 PF14569 zf-UDP: Zinc-binding 42.5 37 0.00081 24.0 3.2 49 82-133 7-62 (80)
141 KOG1815|consensus 42.3 11 0.00023 35.6 0.7 19 97-115 179-197 (444)
142 COG3058 FdhE Uncharacterized p 42.0 22 0.00048 31.3 2.5 46 82-131 183-234 (308)
143 KOG0289|consensus 41.8 19 0.00041 33.7 2.2 54 86-143 2-56 (506)
144 smart00249 PHD PHD zinc finger 41.2 12 0.00025 22.4 0.6 27 87-113 2-31 (47)
145 PF15616 TerY-C: TerY-C metal 40.9 21 0.00046 27.9 2.0 42 83-134 76-117 (131)
146 COG0068 HypF Hydrogenase matur 40.1 13 0.00028 36.9 0.9 53 81-133 98-184 (750)
147 KOG2462|consensus 39.8 21 0.00045 31.4 2.0 54 82-135 159-228 (279)
148 PF10146 zf-C4H2: Zinc finger- 39.5 23 0.00051 30.3 2.3 28 106-137 196-223 (230)
149 smart00132 LIM Zinc-binding do 39.2 24 0.00052 20.1 1.7 34 87-132 2-37 (39)
150 KOG1819|consensus 37.3 18 0.0004 34.5 1.4 30 81-110 898-931 (990)
151 COG4647 AcxC Acetone carboxyla 35.8 18 0.00038 28.2 0.9 21 89-109 62-82 (165)
152 KOG2113|consensus 35.6 27 0.00059 31.3 2.1 44 83-132 342-386 (394)
153 COG5242 TFB4 RNA polymerase II 35.4 17 0.00036 31.2 0.7 11 123-133 275-285 (296)
154 KOG2807|consensus 34.7 31 0.00067 31.1 2.3 43 83-129 329-374 (378)
155 COG5627 MMS21 DNA repair prote 33.8 29 0.00064 29.8 2.0 53 83-137 188-243 (275)
156 COG3492 Uncharacterized protei 33.7 25 0.00054 25.6 1.3 14 105-118 42-55 (104)
157 PF04423 Rad50_zn_hook: Rad50 33.4 19 0.00041 23.2 0.6 13 123-135 21-33 (54)
158 KOG4185|consensus 33.4 12 0.00025 33.0 -0.5 44 85-131 208-265 (296)
159 KOG1356|consensus 33.2 13 0.00028 37.5 -0.3 49 62-115 212-262 (889)
160 KOG0801|consensus 32.7 13 0.00029 30.0 -0.2 27 81-107 174-203 (205)
161 PF10083 DUF2321: Uncharacteri 32.3 25 0.00055 28.2 1.3 26 103-135 27-52 (158)
162 cd00350 rubredoxin_like Rubred 32.1 31 0.00068 19.9 1.4 8 123-130 18-25 (33)
163 smart00647 IBR In Between Ring 32.1 5.9 0.00013 26.0 -2.0 14 101-114 45-58 (64)
164 KOG4451|consensus 31.3 36 0.00078 29.2 2.1 28 106-137 251-278 (286)
165 KOG1829|consensus 30.5 17 0.00037 35.4 0.0 41 82-129 509-557 (580)
166 PF09889 DUF2116: Uncharacteri 29.5 35 0.00075 22.8 1.4 14 122-135 3-16 (59)
167 KOG0827|consensus 28.7 18 0.00039 33.4 -0.1 47 85-135 197-247 (465)
168 KOG1609|consensus 28.1 47 0.001 29.1 2.4 49 84-134 78-135 (323)
169 PF13901 DUF4206: Domain of un 28.0 41 0.00088 28.1 1.9 40 82-130 150-197 (202)
170 KOG3053|consensus 27.9 34 0.00075 29.8 1.4 52 81-132 17-81 (293)
171 PF12660 zf-TFIIIC: Putative z 27.6 3.8 8.2E-05 30.3 -3.9 48 85-133 15-66 (99)
172 KOG0824|consensus 27.6 18 0.00038 32.3 -0.3 48 82-133 103-151 (324)
173 TIGR00622 ssl1 transcription f 26.8 54 0.0012 24.9 2.2 41 85-129 56-110 (112)
174 KOG3726|consensus 26.5 40 0.00086 33.4 1.7 39 85-130 655-697 (717)
175 PRK11088 rrmA 23S rRNA methylt 26.4 42 0.0009 29.0 1.8 22 85-106 3-27 (272)
176 COG4306 Uncharacterized protei 26.3 37 0.0008 26.4 1.2 53 104-169 28-80 (160)
177 smart00734 ZnF_Rad18 Rad18-lik 25.7 33 0.00072 18.8 0.6 8 125-132 4-11 (26)
178 KOG0314|consensus 25.3 18 0.00038 34.1 -0.8 46 80-130 215-263 (448)
179 KOG1814|consensus 23.6 40 0.00088 31.3 1.2 33 81-113 365-403 (445)
180 PRK11595 DNA utilization prote 23.4 60 0.0013 27.4 2.2 38 86-132 7-44 (227)
181 PF10186 Atg14: UV radiation r 23.2 68 0.0015 27.7 2.5 23 86-116 1-23 (302)
182 smart00290 ZnF_UBP Ubiquitin C 22.8 61 0.0013 20.1 1.6 22 87-108 2-23 (50)
183 PF05502 Dynactin_p62: Dynacti 22.8 37 0.0008 32.4 0.8 10 85-94 27-36 (483)
184 PF12773 DZR: Double zinc ribb 22.2 71 0.0015 19.8 1.8 11 123-133 30-40 (50)
185 PF09297 zf-NADH-PPase: NADH p 22.2 4.5 9.7E-05 23.3 -3.5 8 123-130 22-29 (32)
186 PF13719 zinc_ribbon_5: zinc-r 22.0 45 0.00097 19.8 0.8 12 85-96 3-14 (37)
187 smart00154 ZnF_AN1 AN1-like Zi 21.8 67 0.0014 19.4 1.5 22 87-108 1-24 (39)
188 KOG3799|consensus 21.8 17 0.00036 28.5 -1.4 28 80-112 61-89 (169)
189 PLN02189 cellulose synthase 21.7 79 0.0017 33.0 2.9 48 83-133 33-87 (1040)
190 PF09538 FYDLN_acid: Protein o 21.3 33 0.00071 25.8 0.1 28 107-135 12-39 (108)
191 PRK04023 DNA polymerase II lar 21.1 81 0.0017 32.9 2.8 47 82-134 624-675 (1121)
192 KOG0269|consensus 20.9 1E+02 0.0022 31.0 3.4 39 85-127 780-820 (839)
193 TIGR00143 hypF [NiFe] hydrogen 20.5 45 0.00098 33.5 0.9 53 81-133 65-151 (711)
194 PF02148 zf-UBP: Zn-finger in 20.1 78 0.0017 20.9 1.8 31 87-117 1-36 (63)
195 PLN02436 cellulose synthase A 20.0 81 0.0018 33.1 2.6 48 83-133 35-89 (1094)
No 1
>KOG2164|consensus
Probab=99.78 E-value=1.2e-19 Score=165.76 Aligned_cols=116 Identities=41% Similarity=0.757 Sum_probs=98.6
Q ss_pred hhhhccceeEEEcCCCcccccCCCCcccCChhhHhhhhccCCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhC-C
Q psy3978 41 EQFLQANCQFVVRLGEDYGIHLGDPDQLVKWEYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALS-D 119 (243)
Q Consensus 41 ~~~~~~n~~f~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~-~ 119 (243)
+.|++|||+|+|. .++|.....+||.+++|+++.++.... +..||||++.+..|+++.|||.||+.||.+||... .
T Consensus 146 q~f~~any~fvv~-~gd~~~qn~dpD~p~~~e~i~qv~~~t--~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~ 222 (513)
T KOG2164|consen 146 QTFLNANYRFVVD-EGDYVLQNTDPDAPVDWEDIFQVYGST--DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAI 222 (513)
T ss_pred hhhhccchheeec-ccchhhhccCCccccchHHhhhhhcCc--CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcc
Confidence 3799999999999 999999999999999999999976443 89999999999999999999999999999999987 3
Q ss_pred CCCCCCCCCCccccCCCCcchhHHHHhhhccCccceeeeeeecCC
Q psy3978 120 KSWRKCPICYEAVHLGDLKSFRSVIKRARAVNEEVTFQLMKRERG 164 (243)
Q Consensus 120 ~~~~~CP~Cr~~~~~~~l~~~~~~~~~~~~~~~~~~l~l~~r~~~ 164 (243)
..+..||+|+..+..+++.++....... ...++++++..|
T Consensus 223 ~~~~~CPiC~s~I~~kdl~pv~~e~~qk-----ke~l~~~~~~ng 262 (513)
T KOG2164|consen 223 KGPCSCPICRSTITLKDLLPVFIEDDQK-----KEELKLHQDPNG 262 (513)
T ss_pred cCCccCCchhhhccccceeeeeeccccc-----cHHHHHHhcccC
Confidence 4557999999999999999988765521 112555555554
No 2
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.46 E-value=4.2e-14 Score=89.01 Aligned_cols=42 Identities=43% Similarity=0.959 Sum_probs=33.5
Q ss_pred ccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCC
Q psy3978 87 CPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128 (243)
Q Consensus 87 CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~C 128 (243)
||||+++|.+|++++|||+||..||.+|++...+....||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 899999999999999999999999999998765444689987
No 3
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.38 E-value=3e-13 Score=111.08 Aligned_cols=63 Identities=40% Similarity=0.857 Sum_probs=52.6
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhC------------CCCCCCCCCCCccccCCCCcchhHH
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALS------------DKSWRKCPICYEAVHLGDLKSFRSV 143 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~------------~~~~~~CP~Cr~~~~~~~l~~~~~~ 143 (243)
..+++.|+||++.+.+|++++|||.||+.||.+|+... .+....||+|+..+....+.+++..
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr 89 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR 89 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence 45778999999999999999999999999999998642 1123689999999988887776544
No 4
>KOG0823|consensus
Probab=99.37 E-value=2.6e-13 Score=113.41 Aligned_cols=63 Identities=35% Similarity=0.896 Sum_probs=54.4
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHH
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVI 144 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~ 144 (243)
.-..+.|.||++...+||++.|||.|||.||.+|+..+... ..||+|+..+....+.|++-..
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~-~~cPVCK~~Vs~~~vvPlYGrG 106 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNS-KECPVCKAEVSIDTVVPLYGRG 106 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCC-eeCCccccccccceEEeeeccC
Confidence 45678999999999999999999999999999999977543 6899999999988877766543
No 5
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.30 E-value=4.6e-12 Score=86.41 Aligned_cols=58 Identities=19% Similarity=0.341 Sum_probs=51.7
Q ss_pred CccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHH
Q psy3978 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIK 145 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~ 145 (243)
++.||||++.+.+|++++|||+||..||.+|+... ..||+|+..+...++.++..+..
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~----~~cP~~~~~~~~~~l~~~~~l~~ 58 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSH----GTDPVTGQPLTHEDLIPNLALKS 58 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHC----CCCCCCcCCCChhhceeCHHHHH
Confidence 46799999999999999999999999999999874 68999999998888888766654
No 6
>KOG0317|consensus
Probab=99.22 E-value=5.5e-12 Score=108.49 Aligned_cols=53 Identities=36% Similarity=0.951 Sum_probs=48.0
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l 137 (243)
.+....|.+|++...+|.-|+|||.|||.||..|.... ..||+||..+.+.++
T Consensus 236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek----~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEK----AECPLCREKFQPSKV 288 (293)
T ss_pred CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccc----cCCCcccccCCCcce
Confidence 46668999999999999999999999999999999987 579999999987654
No 7
>KOG0287|consensus
Probab=99.21 E-value=3.3e-12 Score=111.71 Aligned_cols=62 Identities=31% Similarity=0.706 Sum_probs=57.3
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~ 146 (243)
..+.++|-||.++|..|++++|||+||.-||..++..+ ..||.|+..+...+++.+..+..+
T Consensus 20 lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~----p~CP~C~~~~~Es~Lr~n~il~Ei 81 (442)
T KOG0287|consen 20 LDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYK----PQCPTCCVTVTESDLRNNRILDEI 81 (442)
T ss_pred hHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhccC----CCCCceecccchhhhhhhhHHHHH
Confidence 56778999999999999999999999999999999988 799999999999999998887654
No 8
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.20 E-value=1.2e-11 Score=76.66 Aligned_cols=38 Identities=58% Similarity=1.318 Sum_probs=33.2
Q ss_pred ccccCCCCCCc-EEcCCCccccHHHHHHHHHhCCCCCCCCCCC
Q psy3978 87 CPICLDLPRAP-QMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128 (243)
Q Consensus 87 CpICl~~~~~p-~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~C 128 (243)
|+||++.+.+| +.++|||+||..|+.+|++.+ ..||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~----~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKN----PKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCT----SB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCc----CCCcCC
Confidence 89999999999 579999999999999999884 799988
No 9
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.13 E-value=4.8e-11 Score=84.19 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=50.4
Q ss_pred CCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHh
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKR 146 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~ 146 (243)
.+++.|||+.++|.+|+++++||+|+..||.+|+.... ..||.|+..+...++.+|..+...
T Consensus 2 P~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~---~~~P~t~~~l~~~~l~pn~~Lk~~ 63 (73)
T PF04564_consen 2 PDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNG---GTDPFTRQPLSESDLIPNRALKSA 63 (73)
T ss_dssp SGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTS---SB-TTT-SB-SGGGSEE-HHHHHH
T ss_pred CcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCC---CCCCCCCCcCCcccceECHHHHHH
Confidence 57889999999999999999999999999999999843 799999999999999998887643
No 10
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=4e-11 Score=109.27 Aligned_cols=61 Identities=33% Similarity=0.670 Sum_probs=54.0
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHH
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIK 145 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~ 145 (243)
.+..+.|+||++.+.+|++++|||.||..||..|+... ..||+|+..+....+..+..+..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~----~~CP~Cr~~~~~~~Lr~N~~L~~ 83 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ----PKCPLCRAEDQESKLRSNWLVSE 83 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC----CCCCCCCCccccccCccchHHHH
Confidence 57889999999999999999999999999999999865 58999999998877877776644
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.10 E-value=6.7e-11 Score=77.22 Aligned_cols=47 Identities=43% Similarity=1.013 Sum_probs=40.2
Q ss_pred CCccccccCCCCCCcEEcCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 83 EDIKCPICLDLPRAPQMTRCGHC-FCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~~CgH~-FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
++..|+||++.+.++++++|||. ||..|+.+|+... ..||+||+++.
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~----~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRK----KKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTT----SBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccC----CCCCcCChhhc
Confidence 35679999999999999999999 9999999999855 79999999874
No 12
>KOG0320|consensus
Probab=99.10 E-value=4.2e-11 Score=96.34 Aligned_cols=55 Identities=38% Similarity=0.855 Sum_probs=46.4
Q ss_pred CCCccccccCCCCCC--cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcch
Q psy3978 82 NEDIKCPICLDLPRA--PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSF 140 (243)
Q Consensus 82 ~~~~~CpICl~~~~~--p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~ 140 (243)
+..+.|||||+.+.. |+.+.|||+||..||...++.. ..||+|++.+..+.+..+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~----~~CP~C~kkIt~k~~~rI 185 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT----NKCPTCRKKITHKQFHRI 185 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhC----CCCCCcccccchhhheec
Confidence 455899999998764 5669999999999999999887 799999998887776544
No 13
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.10 E-value=4.1e-11 Score=76.12 Aligned_cols=40 Identities=38% Similarity=0.917 Sum_probs=33.9
Q ss_pred cccccCCCCC---CcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCC
Q psy3978 86 KCPICLDLPR---APQMTRCGHCFCWPCILHYLALSDKSWRKCPICY 129 (243)
Q Consensus 86 ~CpICl~~~~---~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr 129 (243)
.|+||++.+. ..+.++|||.||..||.+|+..+ ..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC----CcCCccC
Confidence 5999999773 45668999999999999999986 6999996
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.05 E-value=1.7e-10 Score=72.01 Aligned_cols=40 Identities=45% Similarity=1.114 Sum_probs=35.7
Q ss_pred ccccCCCCCCcE-EcCCCccccHHHHHHHHHhCCCCCCCCCCC
Q psy3978 87 CPICLDLPRAPQ-MTRCGHCFCWPCILHYLALSDKSWRKCPIC 128 (243)
Q Consensus 87 CpICl~~~~~p~-~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~C 128 (243)
|+||++.+..|+ +++|||.||..||.+|+.... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~--~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSG--SVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTS--SSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcC--CccCCcC
Confidence 899999999999 799999999999999999532 2789998
No 15
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.05 E-value=1.5e-10 Score=98.94 Aligned_cols=48 Identities=27% Similarity=0.746 Sum_probs=40.2
Q ss_pred CCCccccccCCCCCCc--------EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 82 NEDIKCPICLDLPRAP--------QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p--------~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.++..|+||++.+.++ ++++|||.||..||.+|+... ..||+||..+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~----~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEK----NTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcC----CCCCCCCCEee
Confidence 4568999999976543 457899999999999999865 69999998765
No 16
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.02 E-value=1.8e-10 Score=72.56 Aligned_cols=39 Identities=41% Similarity=0.964 Sum_probs=24.3
Q ss_pred ccccCCCCCC----cEEcCCCccccHHHHHHHHHhCCCCCCCCC
Q psy3978 87 CPICLDLPRA----PQMTRCGHCFCWPCILHYLALSDKSWRKCP 126 (243)
Q Consensus 87 CpICl~~~~~----p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP 126 (243)
||||.+ +.+ |++|+|||+||..||.+++..+....+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 999999999999999999997643347787
No 17
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.98 E-value=5.1e-11 Score=80.39 Aligned_cols=58 Identities=29% Similarity=0.776 Sum_probs=32.4
Q ss_pred CCCccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHH
Q psy3978 82 NEDIKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIK 145 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~ 145 (243)
++.+.|++|.+.+.+|+. ..|.|+||+.||...+. ..||+|..+...++++.|+.+..
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~------~~CPvC~~Paw~qD~~~NrqLd~ 63 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG------SECPVCHTPAWIQDIQINRQLDS 63 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT------TB-SSS--B-S-SS----HHHHH
T ss_pred HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC------CCCCCcCChHHHHHHHhhhhhhc
Confidence 456789999999999986 58999999999977443 46999999999999999988765
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.90 E-value=9.6e-10 Score=91.67 Aligned_cols=53 Identities=25% Similarity=0.636 Sum_probs=40.9
Q ss_pred CCCCccccccCCCCCC---------cEEcCCCccccHHHHHHHHHhCC--CCCCCCCCCCcccc
Q psy3978 81 GNEDIKCPICLDLPRA---------PQMTRCGHCFCWPCILHYLALSD--KSWRKCPICYEAVH 133 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~---------p~~~~CgH~FC~~Ci~~~~~~~~--~~~~~CP~Cr~~~~ 133 (243)
...+.+|+||++...+ ++..+|+|.||..||..|..... +....||+||..+.
T Consensus 167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 4667899999997532 34568999999999999998642 22367999998765
No 19
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.89 E-value=1.9e-09 Score=67.56 Aligned_cols=44 Identities=41% Similarity=1.060 Sum_probs=37.0
Q ss_pred cccccCCCCCCcEEcC-CCccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 86 KCPICLDLPRAPQMTR-CGHCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 86 ~CpICl~~~~~p~~~~-CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
.|+||++.+..++.+. |||.||..|+..|+.... ..||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~---~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGK---NTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCc---CCCCCCCCcC
Confidence 4999999987777654 999999999999998732 6899998753
No 20
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.2e-09 Score=93.19 Aligned_cols=53 Identities=36% Similarity=0.815 Sum_probs=45.7
Q ss_pred CCCccccccCCCCCCcEEcCCCccccHHHHHH-HHHhCCCCCCCCCCCCccccCCCC
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILH-YLALSDKSWRKCPICYEAVHLGDL 137 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~-~~~~~~~~~~~CP~Cr~~~~~~~l 137 (243)
..+..|+||++.+..|..++|||.||+.||.. |-..+. -.||+||+.+..+++
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~---~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKY---EFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhhcc---ccCchhhhhccchhh
Confidence 56889999999999999999999999999999 766652 359999998876654
No 21
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.83 E-value=1.5e-09 Score=93.57 Aligned_cols=60 Identities=30% Similarity=0.539 Sum_probs=51.1
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHH
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVI 144 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~ 144 (243)
....+.|-||-+.+..|..|+|||+||.-||.+++..+ ..||+||.......++......
T Consensus 22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~q----p~CP~Cr~~~~esrlr~~s~~~ 81 (391)
T COG5432 22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQ----PFCPVCREDPCESRLRGSSGSR 81 (391)
T ss_pred chhHHHhhhhhheeecceecccccchhHHHHHHHhcCC----CCCccccccHHhhhcccchhHH
Confidence 44567899999999999999999999999999999987 6899999988776666554443
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.82 E-value=4.8e-09 Score=63.43 Aligned_cols=39 Identities=46% Similarity=1.213 Sum_probs=34.8
Q ss_pred ccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCC
Q psy3978 87 CPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128 (243)
Q Consensus 87 CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~C 128 (243)
|+||++....++.++|||.||..|+..|+.... ..||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~---~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGN---NTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCc---CCCCCC
Confidence 899999989999999999999999999998332 679987
No 23
>KOG2177|consensus
Probab=98.82 E-value=2.5e-09 Score=92.82 Aligned_cols=94 Identities=22% Similarity=0.475 Sum_probs=68.8
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHhhh------------
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKRAR------------ 148 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~~~------------ 148 (243)
..+++.||||++.+..|++++|||+||..|+..++. .. ..||.|+. ... .+.++..+.....
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~---~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~~~~~~~ 83 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GP---LSCPVCRP-PSR-NLRPNVLLANLVERLRQLRLSRPLG 83 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CC---cCCcccCC-chh-ccCccHHHHHHHHHHHhcCCccccc
Confidence 568899999999999998899999999999999988 22 79999995 322 5555555543211
Q ss_pred -----ccCccceeeeeeecCCCeeEeeccCCCCCCCC
Q psy3978 149 -----AVNEEVTFQLMKRERGSTVVSPVAQWDFHPTD 180 (243)
Q Consensus 149 -----~~~~~~~l~l~~r~~~~~~~~~~s~~~~~~~~ 180 (243)
...+...+.++|.+.+...|..|.....|..+
T Consensus 84 ~~~~~c~~~~~~~~~~c~~~~~~~c~~c~~~~~h~~h 120 (386)
T KOG2177|consen 84 SKEELCEKHGEELKLFCEEDEKLLCVLCRESGEHRGH 120 (386)
T ss_pred ccchhhhhcCCcceEEecccccccCCCCCCcccccCC
Confidence 01112226788888888888888876677644
No 24
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.77 E-value=5.4e-09 Score=66.35 Aligned_cols=41 Identities=41% Similarity=1.010 Sum_probs=33.9
Q ss_pred cccccCCCC---CCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 86 KCPICLDLP---RAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 86 ~CpICl~~~---~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
.|+||.+.+ ..|++++|||+||..|+..+.. . ...||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~-~---~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG-K---SVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC-C---CCCCcCCCC
Confidence 499999988 3577899999999999998882 2 279999974
No 25
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.74 E-value=3.1e-09 Score=74.94 Aligned_cols=40 Identities=35% Similarity=0.933 Sum_probs=32.3
Q ss_pred cccccCCCCCC------------c-EEcCCCccccHHHHHHHHHhCCCCCCCCCCCC
Q psy3978 86 KCPICLDLPRA------------P-QMTRCGHCFCWPCILHYLALSDKSWRKCPICY 129 (243)
Q Consensus 86 ~CpICl~~~~~------------p-~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr 129 (243)
.|+||++.+.+ + +..+|||.|+..||.+|+..+ ..||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 49999998833 2 335899999999999999887 6999997
No 26
>KOG0978|consensus
Probab=98.64 E-value=8.8e-09 Score=99.04 Aligned_cols=58 Identities=31% Similarity=0.687 Sum_probs=52.9
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchh
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFR 141 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 141 (243)
..+-+.||+|..-+.+.+++.|||.||..|+...+..+. ..||.|.++|...|+.++.
T Consensus 640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRq---RKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQ---RKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhc---CCCCCCCCCCCcccccccC
Confidence 567899999999999999999999999999999998876 7999999999999887653
No 27
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.54 E-value=6.6e-08 Score=85.16 Aligned_cols=57 Identities=26% Similarity=0.624 Sum_probs=43.2
Q ss_pred CCccccccCCC-CCCcE---Ec-CCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhH
Q psy3978 83 EDIKCPICLDL-PRAPQ---MT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRS 142 (243)
Q Consensus 83 ~~~~CpICl~~-~~~p~---~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~ 142 (243)
++..||+|... ...|. ++ +|||.||.+|+..+|.... ..||.|+..+....+++...
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~---~~CP~C~~~lrk~~fr~q~F 63 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGS---GSCPECDTPLRKNNFRVQLF 63 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCC---CCCCCCCCccchhhcccccc
Confidence 34679999983 44443 22 6999999999999886543 68999999998887665443
No 28
>KOG4628|consensus
Probab=98.40 E-value=1.5e-07 Score=84.24 Aligned_cols=47 Identities=28% Similarity=0.666 Sum_probs=40.4
Q ss_pred cccccCCCCCCc---EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 86 KCPICLDLPRAP---QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 86 ~CpICl~~~~~p---~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
.|.||+|.+... ++|||+|.|+..||..|+.... ..||+|+..+...
T Consensus 231 ~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r---~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 231 TCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTR---TFCPVCKRDIRTD 280 (348)
T ss_pred eEEEeecccccCCeeeEecCCCchhhccchhhHhhcC---ccCCCCCCcCCCC
Confidence 899999988764 5589999999999999999874 6799999876543
No 29
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.1e-07 Score=82.88 Aligned_cols=49 Identities=35% Similarity=0.806 Sum_probs=42.0
Q ss_pred CCCCccccccCCCC-CC------------cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 81 GNEDIKCPICLDLP-RA------------PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 81 ~~~~~~CpICl~~~-~~------------p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
..++..|.||++.+ .. |..++|||.++..|+..|++.+ .+||+||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq----QTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ----QTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc----cCCCcccCccc
Confidence 57888999999974 32 3678999999999999999988 69999999853
No 30
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.38 E-value=3.5e-07 Score=65.60 Aligned_cols=50 Identities=30% Similarity=0.672 Sum_probs=36.2
Q ss_pred CccccccCCCCC-----------C-cEE-cCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 84 DIKCPICLDLPR-----------A-PQM-TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 84 ~~~CpICl~~~~-----------~-p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
+..|.||...|. + |++ -.|+|.|+..||.+|+..+.. ...||+||+....
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~-~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSS-KGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccC-CCCCCCcCCeeee
Confidence 445666665543 1 444 379999999999999997532 2699999997653
No 31
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5.2e-07 Score=78.43 Aligned_cols=50 Identities=26% Similarity=0.627 Sum_probs=41.1
Q ss_pred CCCccccccCCCCCC---cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRA---PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~---p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.....|.||++.+.. -+.+||.|.|+..|+..|+.... ..||+||.++++
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~---~~CPvCrt~iPP 373 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYS---NKCPVCRTAIPP 373 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhc---ccCCccCCCCCC
Confidence 445789999997753 24589999999999999998543 799999998864
No 32
>KOG0802|consensus
Probab=98.28 E-value=3.4e-07 Score=87.66 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=43.1
Q ss_pred CCCccccccCCCCCC-----cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRA-----PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~-----p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..+..|+||.+.+.. |..++|||.||..|+..|++.. ..||+||..+..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~----qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ----QTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh----CcCCcchhhhhc
Confidence 457789999999887 7889999999999999999997 699999985543
No 33
>KOG0311|consensus
Probab=98.22 E-value=1.1e-07 Score=84.23 Aligned_cols=51 Identities=33% Similarity=0.773 Sum_probs=44.2
Q ss_pred CCCCccccccCCCCCCcEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLPRAPQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
...++.|||||+++...+++ .|+|.||..||..-+.... ..||.||+.+..
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn---~ecptcRk~l~S 91 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGN---NECPTCRKKLVS 91 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcC---CCCchHHhhccc
Confidence 45678899999999998887 5999999999998888775 799999988753
No 34
>KOG0824|consensus
Probab=98.16 E-value=1.2e-06 Score=76.20 Aligned_cols=49 Identities=24% Similarity=0.589 Sum_probs=43.1
Q ss_pred CccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
.-.|+||+....-|+.+.|+|.||.-||........ ..|++||.++...
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk---~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDK---KTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCC---CCCceecCCCCcc
Confidence 346999999999999999999999999998777664 6799999999764
No 35
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=98.03 E-value=2.7e-06 Score=56.95 Aligned_cols=45 Identities=36% Similarity=0.792 Sum_probs=31.3
Q ss_pred CCCCccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCCCCCCCCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPI 127 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~ 127 (243)
..-.+.|||.+..+.+|+. ..|||+|....|.+|+... +...||+
T Consensus 8 ~~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~--~~~~CPv 53 (57)
T PF11789_consen 8 GTISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRN--GSKRCPV 53 (57)
T ss_dssp SB--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTT--S-EE-SC
T ss_pred cEeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhc--CCCCCCC
Confidence 3456889999999999988 5899999999999999432 2378998
No 36
>KOG4159|consensus
Probab=98.02 E-value=2.4e-06 Score=78.23 Aligned_cols=50 Identities=28% Similarity=0.739 Sum_probs=45.2
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
...++.|.||...+..|+.++|||+||..||.+.+... ..||.|+..+..
T Consensus 81 ~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~----~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 81 IRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQE----TECPLCRDELVE 130 (398)
T ss_pred ccchhhhhhhHhhcCCCccccccccccHHHHHHHhccC----CCCccccccccc
Confidence 47889999999999999999999999999999977755 799999998875
No 37
>KOG2660|consensus
Probab=98.02 E-value=2.3e-06 Score=75.37 Aligned_cols=62 Identities=32% Similarity=0.642 Sum_probs=49.9
Q ss_pred CCCCccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC----CCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG----DLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~----~l~~~~~~~~~ 146 (243)
......|.+|..++.++.+ +.|-|+||.+||.+++... ..||.|...+... .++....+...
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~----~~CP~C~i~ih~t~pl~ni~~Drtlqdi 78 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEES----KYCPTCDIVIHKTHPLLNIRSDRTLQDI 78 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHh----ccCCccceeccCccccccCCcchHHHHH
Confidence 4567889999999999987 4799999999999999986 7999999888653 34444455444
No 38
>KOG4172|consensus
Probab=98.00 E-value=1.1e-06 Score=57.20 Aligned_cols=46 Identities=33% Similarity=0.887 Sum_probs=39.9
Q ss_pred ccccccCCCCCCcEEcCCCc-cccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 85 IKCPICLDLPRAPQMTRCGH-CFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 85 ~~CpICl~~~~~p~~~~CgH-~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.+|.||.+.+.+.+...||| -.|..|-.+.++... ..||+||+++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~---g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALH---GCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccC---CcCcchhhHHH
Confidence 46999999999999999999 679999998887543 79999999764
No 39
>KOG2879|consensus
Probab=97.97 E-value=5.8e-06 Score=71.13 Aligned_cols=51 Identities=35% Similarity=0.916 Sum_probs=41.8
Q ss_pred CCCCccccccCCCCCCcEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 81 GNEDIKCPICLDLPRAPQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.....+||+|.+.+..|.+. +|||+||..||..-..... .+.||.|...+.
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~a--sf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDA--SFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchh--hcccCccCCCCc
Confidence 45678899999999999886 5999999999987665432 279999988765
No 40
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.96 E-value=4.9e-06 Score=72.36 Aligned_cols=79 Identities=37% Similarity=0.631 Sum_probs=58.0
Q ss_pred cceeEEEcCCCcccccCCCCcccCChhhHhhhhc---cCCCC----------ccccccCCCCCCcEEc-CCCccccHHHH
Q psy3978 46 ANCQFVVRLGEDYGIHLGDPDQLVKWEYIQQIRG---FGNED----------IKCPICLDLPRAPQMT-RCGHCFCWPCI 111 (243)
Q Consensus 46 ~n~~f~v~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~----------~~CpICl~~~~~p~~~-~CgH~FC~~Ci 111 (243)
+|...++.+.+.|.+...+ ...|+.-.+-.. ...++ +.||.|..++..|+.+ .|||.||..||
T Consensus 226 ~~a~imit~EG~yVv~qpd---vqsWe~Yq~r~~a~~~~~Dqv~k~~~~~i~LkCplc~~Llrnp~kT~cC~~~fc~eci 302 (427)
T COG5222 226 SNAAIMITPEGGYVVAQPD---VQSWEKYQQRTKAVAEIPDQVYKMQPPNISLKCPLCHCLLRNPMKTPCCGHTFCDECI 302 (427)
T ss_pred cccceEEcCCCCeEEeccc---hHHHHHHHHHHHhhhhCchhhhccCCCCccccCcchhhhhhCcccCccccchHHHHHH
Confidence 4566778888888765544 445665332211 12222 8999999999999998 58999999999
Q ss_pred HHHHHhCCCCCCCCCCCCc
Q psy3978 112 LHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 112 ~~~~~~~~~~~~~CP~Cr~ 130 (243)
..-|.... +.||.|..
T Consensus 303 ~~al~dsD---f~CpnC~r 318 (427)
T COG5222 303 GTALLDSD---FKCPNCSR 318 (427)
T ss_pred hhhhhhcc---ccCCCccc
Confidence 98887776 99999965
No 41
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.77 E-value=8.2e-06 Score=67.08 Aligned_cols=46 Identities=30% Similarity=0.703 Sum_probs=39.7
Q ss_pred CccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.+.|-||-..+..|+.+.|||.||..|..+-+... ..|-+|.+...
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg----~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG----DECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccC----Ccceecchhhc
Confidence 47899999999999999999999999988766554 68999987553
No 42
>KOG4692|consensus
Probab=97.66 E-value=8.5e-06 Score=72.38 Aligned_cols=52 Identities=31% Similarity=0.595 Sum_probs=46.2
Q ss_pred ccCCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 79 GFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 79 ~~~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.+..++-.||||..-...++..||+|.-|+.||.+++.+. +.|-.|+..+..
T Consensus 417 lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~----k~CFfCktTv~~ 468 (489)
T KOG4692|consen 417 LPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNC----KRCFFCKTTVID 468 (489)
T ss_pred CCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcC----CeeeEecceeee
Confidence 4456788999999999999999999999999999999987 689999887753
No 43
>KOG1002|consensus
Probab=97.65 E-value=2.3e-06 Score=79.43 Aligned_cols=96 Identities=15% Similarity=0.310 Sum_probs=64.3
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCC-CCCCCCCCCCccccCCCCcchhHH------------HHh-
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSD-KSWRKCPICYEAVHLGDLKSFRSV------------IKR- 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~-~~~~~CP~Cr~~~~~~~l~~~~~~------------~~~- 146 (243)
..++..|.+|.+...+++.+.|.|.||..||.+|+..-. ....+||+|...+....-.+.... ..+
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRin 612 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRIN 612 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcc
Confidence 466788999999999999999999999999999887432 222799999987765432222110 000
Q ss_pred --hhccCc-----cceeeeeeecCCCeeEeeccCCCC
Q psy3978 147 --ARAVNE-----EVTFQLMKRERGSTVVSPVAQWDF 176 (243)
Q Consensus 147 --~~~~~~-----~~~l~l~~r~~~~~~~~~~s~~~~ 176 (243)
.++.+. ..++.+|...+++...+++|+...
T Consensus 613 m~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTS 649 (791)
T KOG1002|consen 613 MDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTS 649 (791)
T ss_pred hhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHH
Confidence 011111 123456777788888888887654
No 44
>KOG0804|consensus
Probab=97.58 E-value=2e-05 Score=71.96 Aligned_cols=47 Identities=26% Similarity=0.699 Sum_probs=38.8
Q ss_pred CCCCccccccCCCCCCcE----EcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 81 GNEDIKCPICLDLPRAPQ----MTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~----~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
..+..+||||++.+-..+ .+.|.|+|...|+..|+. ..||+||....
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~------~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD------SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhccc------CcChhhhhhcC
Confidence 457789999999876543 368999999999999986 68999997655
No 45
>KOG0297|consensus
Probab=97.56 E-value=3.3e-05 Score=71.18 Aligned_cols=55 Identities=36% Similarity=0.874 Sum_probs=47.2
Q ss_pred CCCCccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcc
Q psy3978 81 GNEDIKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKS 139 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 139 (243)
..+.+.|++|...+.+|+. +.|||.||..|+..|+... ..||.|+..+......+
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~----~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNH----QKCPVCRQELTQAEELP 73 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccC----cCCcccccccchhhccC
Confidence 4677899999999999999 4999999999999999984 79999988876654443
No 46
>KOG1645|consensus
Probab=97.53 E-value=2.3e-05 Score=70.84 Aligned_cols=60 Identities=27% Similarity=0.573 Sum_probs=46.5
Q ss_pred CCccccccCCCCCCc-----EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHH
Q psy3978 83 EDIKCPICLDLPRAP-----QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVI 144 (243)
Q Consensus 83 ~~~~CpICl~~~~~p-----~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~ 144 (243)
...+||||++.+..| +.+.|||.|-..||++|+... ....||.|......+.+++...+.
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~--~~~~cp~c~~katkr~i~~e~alR 67 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKK--TKMQCPLCSGKATKRQIRPEYALR 67 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhh--hhhhCcccCChhHHHHHHHHHHHH
Confidence 346799999976655 346899999999999999522 237899999888877777665553
No 47
>KOG1813|consensus
Probab=97.49 E-value=3.1e-05 Score=67.34 Aligned_cols=46 Identities=37% Similarity=0.798 Sum_probs=40.3
Q ss_pred CccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.+.|-||..++..||++.|||.||..|....+... ..|++|.+...
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~----~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKG----EKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccC----Ccceecccccc
Confidence 46799999999999999999999999998777655 68999987664
No 48
>KOG4265|consensus
Probab=97.31 E-value=0.00018 Score=64.31 Aligned_cols=48 Identities=29% Similarity=0.763 Sum_probs=40.5
Q ss_pred CCCccccccCCCCCCcEEcCCCc-cccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGH-CFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH-~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
+...+|-||+....+-+++||.| -.|..|.....-+. ..||+||.++.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~----n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQT----NNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhh----cCCCccccchH
Confidence 45678999999999999999999 57999987665444 58999999875
No 49
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.29 E-value=0.00039 Score=44.97 Aligned_cols=42 Identities=26% Similarity=0.648 Sum_probs=33.9
Q ss_pred cccccCC--CCCCcEEcCCC-----ccccHHHHHHHHHhCCCCCCCCCCCC
Q psy3978 86 KCPICLD--LPRAPQMTRCG-----HCFCWPCILHYLALSDKSWRKCPICY 129 (243)
Q Consensus 86 ~CpICl~--~~~~p~~~~Cg-----H~FC~~Ci~~~~~~~~~~~~~CP~Cr 129 (243)
.|-||++ ...++.+.||. |.++..|+.+|+..+.+ ..||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~--~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGN--KTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCC--CcCCCCC
Confidence 3889997 45667778885 78999999999987743 5899994
No 50
>KOG0828|consensus
Probab=97.26 E-value=0.00016 Score=66.97 Aligned_cols=49 Identities=24% Similarity=0.600 Sum_probs=37.8
Q ss_pred CCCccccccCCCCCC-----------------cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 82 NEDIKCPICLDLPRA-----------------PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 82 ~~~~~CpICl~~~~~-----------------p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
+....|+||+....- -+.+||.|.|+..|+.+|+..-+ ..||+||.+++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~yk---l~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYK---LICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhc---ccCCccCCCCC
Confidence 455679999974321 13469999999999999998543 68999999875
No 51
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.14 E-value=7.5e-05 Score=52.08 Aligned_cols=50 Identities=26% Similarity=0.763 Sum_probs=24.7
Q ss_pred CccccccCCCCC-C---cEE----cCCCccccHHHHHHHHHhCCCC-------CCCCCCCCcccc
Q psy3978 84 DIKCPICLDLPR-A---PQM----TRCGHCFCWPCILHYLALSDKS-------WRKCPICYEAVH 133 (243)
Q Consensus 84 ~~~CpICl~~~~-~---p~~----~~CgH~FC~~Ci~~~~~~~~~~-------~~~CP~Cr~~~~ 133 (243)
+..|+||..... . |.. ..|+..|+..||.+|+....+. ...||.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 467999998654 2 333 2699999999999999854211 136999998875
No 52
>KOG1785|consensus
Probab=97.09 E-value=0.00021 Score=64.61 Aligned_cols=48 Identities=23% Similarity=0.682 Sum_probs=41.0
Q ss_pred ccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 85 IKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 85 ~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..|-||-+--.+-.+-+|||..|..|+..|....++ ..||.||..+.-
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~g--q~CPFCRcEIKG 417 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEG--QTCPFCRCEIKG 417 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCC--CCCCceeeEecc
Confidence 469999998888888899999999999999866542 799999987753
No 53
>KOG1039|consensus
Probab=97.08 E-value=0.00031 Score=63.37 Aligned_cols=52 Identities=25% Similarity=0.733 Sum_probs=40.2
Q ss_pred CCCccccccCCCCCCcE-----E---cCCCccccHHHHHHHHHhCC---CCCCCCCCCCcccc
Q psy3978 82 NEDIKCPICLDLPRAPQ-----M---TRCGHCFCWPCILHYLALSD---KSWRKCPICYEAVH 133 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~-----~---~~CgH~FC~~Ci~~~~~~~~---~~~~~CP~Cr~~~~ 133 (243)
..+..|-||++...+.. . .+|.|.||..||..|-.... +..+.||.||....
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 56789999999776655 3 46999999999999985432 12378999998764
No 54
>KOG0827|consensus
Probab=97.02 E-value=0.00032 Score=63.23 Aligned_cols=90 Identities=21% Similarity=0.469 Sum_probs=52.1
Q ss_pred cccccCCCCCCcE----EcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHhhhccCccceeeeeee
Q psy3978 86 KCPICLDLPRAPQ----MTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKRARAVNEEVTFQLMKR 161 (243)
Q Consensus 86 ~CpICl~~~~~p~----~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~~~~~~~~~~l~l~~r 161 (243)
.|.||.+.+-.-. +-.|||+|+..|+.+|++..... ..||.|+-.+..+.+....... ........+.....++
T Consensus 6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~-R~cpic~ik~~~r~~~N~~~~d-~vvEe~~Vld~~~~K~ 83 (465)
T KOG0827|consen 6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSN-RGCPICQIKLQERHVANPSTVD-HVVEESVVLDWDVGKK 83 (465)
T ss_pred eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCcc-CCCCceeecccceeeechhhhh-hhhccchhhhHHHHHh
Confidence 5999976543322 22499999999999999987522 6899999656655544211111 1111111122224555
Q ss_pred cCCCeeEeeccCCCCC
Q psy3978 162 ERGSTVVSPVAQWDFH 177 (243)
Q Consensus 162 ~~~~~~~~~~s~~~~~ 177 (243)
..|.........|+.-
T Consensus 84 ~~gkvk~~~s~~~~~K 99 (465)
T KOG0827|consen 84 CGGKVKYSVSPGWPYK 99 (465)
T ss_pred hccchhhhcCcCCccc
Confidence 5666655555555544
No 55
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=96.98 E-value=0.00083 Score=47.34 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=26.2
Q ss_pred CCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 101 RCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 101 ~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.|.|.|...||.+|+..+ ..||++++...
T Consensus 53 ~CnHaFH~HCI~rWL~Tk----~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTK----GVCPLDRQTWV 81 (88)
T ss_pred ecchHHHHHHHHHHHhhC----CCCCCCCceeE
Confidence 699999999999999986 69999998764
No 56
>KOG1734|consensus
Probab=96.81 E-value=0.00028 Score=60.82 Aligned_cols=56 Identities=29% Similarity=0.527 Sum_probs=42.3
Q ss_pred CCCccccccCCCCCCc----------EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcc
Q psy3978 82 NEDIKCPICLDLPRAP----------QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKS 139 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p----------~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 139 (243)
.++-.|.||...+... ..++|+|+|+-.||..|-.-.++ .+||.|++.+..+...+
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKk--qtCPYCKekVdl~rmfs 287 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKK--QTCPYCKEKVDLKRMFS 287 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCC--CCCchHHHHhhHhhhcc
Confidence 4566799999755432 35799999999999999876654 69999998876544433
No 57
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.63 E-value=0.00059 Score=67.64 Aligned_cols=51 Identities=24% Similarity=0.656 Sum_probs=39.3
Q ss_pred CCCCccccccCCCCC--C---c--EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 81 GNEDIKCPICLDLPR--A---P--QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 81 ~~~~~~CpICl~~~~--~---p--~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.....+|+||...+. + | +.-.|.|-|+..|+.+|+..+.. ..||+||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~--s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSAR--SNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCC--CCCCccccccc
Confidence 456678999997553 1 2 22359999999999999998754 79999997664
No 58
>KOG4367|consensus
Probab=96.57 E-value=0.0012 Score=60.52 Aligned_cols=37 Identities=32% Similarity=0.836 Sum_probs=33.3
Q ss_pred CCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhC
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALS 118 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~ 118 (243)
++++.||||...+.+|++++|||+.|..|....+.+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQT 38 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcccC
Confidence 5789999999999999999999999999998766554
No 59
>KOG3039|consensus
Probab=96.50 E-value=0.002 Score=55.00 Aligned_cols=54 Identities=15% Similarity=0.296 Sum_probs=45.4
Q ss_pred CCCccccccCCCCCCcE----EcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcc
Q psy3978 82 NEDIKCPICLDLPRAPQ----MTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKS 139 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~----~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 139 (243)
...+.||||.+.+.+.+ .-+|||+||..|+.+++... ..||+|..++..+++..
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D----~v~pv~d~plkdrdiI~ 276 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD----MVDPVTDKPLKDRDIIG 276 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc----ccccCCCCcCcccceEe
Confidence 36688999999887653 34899999999999998876 79999999998887654
No 60
>KOG4275|consensus
Probab=96.50 E-value=0.00043 Score=60.26 Aligned_cols=42 Identities=36% Similarity=0.844 Sum_probs=34.9
Q ss_pred CccccccCCCCCCcEEcCCCc-cccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 84 DIKCPICLDLPRAPQMTRCGH-CFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~~CgH-~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
...|.||++.+.+-+.|+||| +-|..|-.+. ..||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm--------~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM--------NECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc--------ccCchHHHHHH
Confidence 567999999999999999999 6799885432 58999998653
No 61
>KOG1493|consensus
Probab=96.50 E-value=0.0011 Score=46.29 Aligned_cols=47 Identities=30% Similarity=0.627 Sum_probs=34.4
Q ss_pred cccccCCCCCC------------cEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 86 KCPICLDLPRA------------PQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 86 ~CpICl~~~~~------------p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.|-||.-.|.. |.++ .|.|.|...||.+|+..... ...||+||....
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~ts-q~~CPmcRq~~~ 81 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTS-QGQCPMCRQTWQ 81 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccc-cccCCcchheeE
Confidence 56666655432 3333 59999999999999986543 278999998764
No 62
>KOG1001|consensus
Probab=96.48 E-value=0.00067 Score=66.47 Aligned_cols=49 Identities=33% Similarity=0.745 Sum_probs=42.3
Q ss_pred ccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCC
Q psy3978 85 IKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGD 136 (243)
Q Consensus 85 ~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~ 136 (243)
..|+||++ ...++++.|||.||..|+...+..... ..||.|+..+....
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~--~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSEN--APCPLCRNVLKEKK 503 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccC--CCCcHHHHHHHHHH
Confidence 89999999 888899999999999999999887753 47999998776543
No 63
>KOG0825|consensus
Probab=96.34 E-value=0.00086 Score=65.29 Aligned_cols=49 Identities=20% Similarity=0.469 Sum_probs=38.7
Q ss_pred CCCccccccCCCCCCcEE---cCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRAPQM---TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~---~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.....||+|+..+.+..+ .+|+|.||..||..|-... .+||+||..+..
T Consensus 121 ~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a----qTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 121 HVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA----QTCPVDRGEFGE 172 (1134)
T ss_pred hhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc----ccCchhhhhhhe
Confidence 345679999876655433 4799999999999998876 599999987754
No 64
>KOG1571|consensus
Probab=96.29 E-value=0.0022 Score=57.55 Aligned_cols=45 Identities=33% Similarity=0.890 Sum_probs=35.6
Q ss_pred CCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
....-|.||++.+.+.+.++|||.-| |..-.... ..||+||..+.
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~l-----~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKHL-----PQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHHHhhC-----CCCchhHHHHH
Confidence 44567999999999999999999877 76544333 57999998764
No 65
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.06 E-value=0.0035 Score=41.18 Aligned_cols=48 Identities=23% Similarity=0.568 Sum_probs=36.8
Q ss_pred CCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCC
Q psy3978 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGD 136 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~ 136 (243)
.+..|-.|...-...++++|||..|..|..-.- ...||.|..++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r------YngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPGER------YNGCPFCGTPFEFDD 53 (55)
T ss_pred cceeEEEccccccccccccccceeeccccChhh------ccCCCCCCCcccCCC
Confidence 455677888887888899999999999975321 268999999886543
No 66
>KOG4185|consensus
Probab=96.03 E-value=0.0041 Score=55.06 Aligned_cols=46 Identities=33% Similarity=0.717 Sum_probs=38.2
Q ss_pred CccccccCCCCC------CcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 84 DIKCPICLDLPR------APQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 84 ~~~CpICl~~~~------~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
.+.|-||-+.+. .|+.+.|||+||..|+...+.... ..||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~---i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSR---ILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcCce---eeccCCCCcc
Confidence 356999998664 478899999999999998887764 6889999984
No 67
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.98 E-value=0.0071 Score=52.76 Aligned_cols=54 Identities=20% Similarity=0.423 Sum_probs=41.9
Q ss_pred CCCCccccccCCCCCCc---E-EcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcc
Q psy3978 81 GNEDIKCPICLDLPRAP---Q-MTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKS 139 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p---~-~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 139 (243)
....+.|||....|..- + +.+|||+|+..+|.+.- .. ..||+|..++...++.+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~----~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KS----KKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-cc----ccccccCCccccCCEEE
Confidence 46678999999988542 2 24999999999999873 12 57999999998776554
No 68
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.86 E-value=0.0095 Score=46.24 Aligned_cols=53 Identities=19% Similarity=0.605 Sum_probs=44.4
Q ss_pred CCCccccccCCCCCCcEEcC----CCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 82 NEDIKCPICLDLPRAPQMTR----CGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~----CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
....+|.||.|...+...+. ||-..|..|-...|+... -...||+|+.++...
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~-~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCN-LYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcc-cCCCCCccccccccc
Confidence 45679999999999988873 999999999999988764 347999999988654
No 69
>KOG0826|consensus
Probab=95.79 E-value=0.0077 Score=53.44 Aligned_cols=49 Identities=29% Similarity=0.760 Sum_probs=40.4
Q ss_pred CCCCccccccCCCCCCcEEcC-CCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 81 GNEDIKCPICLDLPRAPQMTR-CGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~-CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
..+.-.||||+..-.+|..+. -|-+||+.|+..++... ..||+-..+..
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~----~~CPVT~~p~~ 346 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNY----GHCPVTGYPAS 346 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhc----CCCCccCCcch
Confidence 456678999999988887765 59999999999999966 68998766543
No 70
>KOG3800|consensus
Probab=95.76 E-value=0.0077 Score=52.57 Aligned_cols=51 Identities=25% Similarity=0.730 Sum_probs=39.8
Q ss_pred cccccCC-CCCCcEE----cCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcc
Q psy3978 86 KCPICLD-LPRAPQM----TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKS 139 (243)
Q Consensus 86 ~CpICl~-~~~~p~~----~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 139 (243)
.||+|.. .+.+|-+ -+|||..|-+|+...+..+. ..||.|...+....++.
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~---~~CpeC~~iLRk~nfr~ 57 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGP---AQCPECMVILRKNNFRV 57 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCC---CCCCcccchhhhcccch
Confidence 4999987 3444422 38999999999999998876 79999999887766553
No 71
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.74 E-value=0.013 Score=46.87 Aligned_cols=35 Identities=26% Similarity=0.758 Sum_probs=26.1
Q ss_pred CCccccccCCCCCCcEEcCC------------Cccc-cHHHHHHHHHh
Q psy3978 83 EDIKCPICLDLPRAPQMTRC------------GHCF-CWPCILHYLAL 117 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~~C------------gH~F-C~~Ci~~~~~~ 117 (243)
++.+||||++.+-++|.|-| +.+| ...|+.+|-+.
T Consensus 1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka 48 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKA 48 (162)
T ss_pred CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHH
Confidence 46789999999999998754 3222 46888888764
No 72
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.62 E-value=0.0065 Score=38.96 Aligned_cols=43 Identities=28% Similarity=0.686 Sum_probs=21.2
Q ss_pred ccccCCCCCC--cEEc--CCCccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 87 CPICLDLPRA--PQMT--RCGHCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 87 CpICl~~~~~--p~~~--~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
||+|.+.+.. -... +||+..|..|..+.+.... ..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~---g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEG---GRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS----SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccC---CCCCCCCCCC
Confidence 7899987622 2223 5899999999888776433 7999999864
No 73
>KOG2930|consensus
Probab=95.61 E-value=0.0088 Score=44.30 Aligned_cols=27 Identities=30% Similarity=0.764 Sum_probs=24.4
Q ss_pred CCCccccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 101 RCGHCFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 101 ~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
.|.|.|+..||.+|++.+ ..||+|.+.
T Consensus 80 ~CNHaFH~hCisrWlktr----~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR----NVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhc----CcCCCcCcc
Confidence 599999999999999988 689999764
No 74
>KOG1941|consensus
Probab=95.27 E-value=0.0076 Score=54.66 Aligned_cols=48 Identities=25% Similarity=0.574 Sum_probs=37.3
Q ss_pred CCCccccccCCCCC--Cc--EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 82 NEDIKCPICLDLPR--AP--QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 82 ~~~~~CpICl~~~~--~p--~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
+-++.|..|.+.+. +- .-+||.|+|+..|+.+++.++. ...||.||+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~--~rsCP~Crkl 414 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNG--TRSCPNCRKL 414 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCC--CCCCccHHHH
Confidence 45788999999643 22 2379999999999999997653 2799999943
No 75
>KOG4739|consensus
Probab=94.97 E-value=0.0075 Score=51.39 Aligned_cols=49 Identities=31% Similarity=0.891 Sum_probs=33.0
Q ss_pred ccccccCCCC-CCcE-EcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcc
Q psy3978 85 IKCPICLDLP-RAPQ-MTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKS 139 (243)
Q Consensus 85 ~~CpICl~~~-~~p~-~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 139 (243)
.-|..|..-. .+|. +|.|+|+||..|...-.. ..||.|+.++....+..
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~------~~C~lCkk~ir~i~l~~ 54 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP------DVCPLCKKSIRIIQLNR 54 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc------cccccccceeeeeeccc
Confidence 3588787643 3443 479999999999753211 38999999876544433
No 76
>KOG4362|consensus
Probab=94.68 E-value=0.0059 Score=59.29 Aligned_cols=62 Identities=23% Similarity=0.587 Sum_probs=48.5
Q ss_pred hhhccCCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCc
Q psy3978 76 QIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLK 138 (243)
Q Consensus 76 ~v~~~~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 138 (243)
+|+....-.++||||......|+.+.|-|.||..|+...+..... ...||+|+..+..+..+
T Consensus 13 ~vi~~~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~-~~~~~lc~~~~eK~s~~ 74 (684)
T KOG4362|consen 13 QVINAMQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKG-PKQCALCKSDIEKRSLR 74 (684)
T ss_pred hHHHHHhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCc-cccchhhhhhhhhhhcc
Confidence 344445678899999999999999999999999999877766543 37899999766554433
No 77
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.54 E-value=0.084 Score=47.38 Aligned_cols=49 Identities=29% Similarity=0.733 Sum_probs=38.7
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
.++...|-||-+-+.-...+||+|..|.-|-.+.-..-.. +.||+|+..
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~--K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQ--KGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhc--cCCCccccc
Confidence 5778889999998887788999999999998764332111 689999864
No 78
>KOG3161|consensus
Probab=94.43 E-value=0.015 Score=55.88 Aligned_cols=38 Identities=34% Similarity=0.788 Sum_probs=30.0
Q ss_pred CCccccccCCCCC----CcEEcCCCccccHHHHHHHHHhCCCCCCCCC
Q psy3978 83 EDIKCPICLDLPR----APQMTRCGHCFCWPCILHYLALSDKSWRKCP 126 (243)
Q Consensus 83 ~~~~CpICl~~~~----~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP 126 (243)
+.+.|+||+..|. .|+.+.|||+.|..|+..... ..||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn------~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN------ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh------ccCC
Confidence 3345999988764 588899999999999986654 4677
No 79
>KOG1814|consensus
Probab=94.40 E-value=0.022 Score=52.02 Aligned_cols=49 Identities=29% Similarity=0.606 Sum_probs=35.1
Q ss_pred CCCCccccccCCCCCC---cEEcCCCccccHHHHHHHHHhCCC----CCCCCCCCC
Q psy3978 81 GNEDIKCPICLDLPRA---PQMTRCGHCFCWPCILHYLALSDK----SWRKCPICY 129 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~---p~~~~CgH~FC~~Ci~~~~~~~~~----~~~~CP~Cr 129 (243)
....+.|.||++.... -+.++|+|.||..|+..|+...-. ....||-+.
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 4567899999996543 244899999999999999875321 124677543
No 80
>KOG3002|consensus
Probab=94.35 E-value=0.033 Score=49.54 Aligned_cols=46 Identities=26% Similarity=0.657 Sum_probs=37.4
Q ss_pred CCCCccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 81 GNEDIKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
..+.+.||||.+.+..|+. -.=||.-|..|-.+.. ..||.|+.++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~~-------~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKVS-------NKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhhc-------ccCCccccccc
Confidence 5577889999999998865 3458999999976332 68999999887
No 81
>KOG2817|consensus
Probab=94.04 E-value=0.038 Score=50.29 Aligned_cols=52 Identities=21% Similarity=0.361 Sum_probs=39.5
Q ss_pred CCCCccccccCCC---CCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 81 GNEDIKCPICLDL---PRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 81 ~~~~~~CpICl~~---~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
....+.|||=.+. -..|+++.|||+.|..-+.+....... .+.||.|.....
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~-sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQ-SFKCPYCPVEQL 385 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCe-eeeCCCCCcccC
Confidence 3566899997663 345888999999999999988776532 389999965443
No 82
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=93.79 E-value=0.024 Score=36.70 Aligned_cols=46 Identities=28% Similarity=0.715 Sum_probs=22.6
Q ss_pred ccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCC-CCCCCCCCCCcc
Q psy3978 85 IKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSD-KSWRKCPICYEA 131 (243)
Q Consensus 85 ~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~-~~~~~CP~Cr~~ 131 (243)
+.|||....+..|+. ..|.|.-|.+= ..|+.... .+...||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl-~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDL-ESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEH-HHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECH-HHHHHHhhccCCeECcCCcCc
Confidence 679999999999987 58999877542 33443221 122789999763
No 83
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.57 E-value=0.027 Score=41.81 Aligned_cols=33 Identities=27% Similarity=0.583 Sum_probs=27.0
Q ss_pred cCCCCccccccCCCCCCcEE--cCCCccccHHHHH
Q psy3978 80 FGNEDIKCPICLDLPRAPQM--TRCGHCFCWPCIL 112 (243)
Q Consensus 80 ~~~~~~~CpICl~~~~~p~~--~~CgH~FC~~Ci~ 112 (243)
...+...|++|...+..... .||||.|+..|+.
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 35667789999998877654 5999999999974
No 84
>PHA03096 p28-like protein; Provisional
Probab=93.54 E-value=0.044 Score=48.39 Aligned_cols=45 Identities=24% Similarity=0.289 Sum_probs=31.3
Q ss_pred ccccccCCCCCC-c-------EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 85 IKCPICLDLPRA-P-------QMTRCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 85 ~~CpICl~~~~~-p-------~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
-.|.||++.... + ....|.|.||..|+..|....... ..||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~-e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYK-ETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhc-ccCccccc
Confidence 679999995432 1 223699999999999998865421 45555544
No 85
>KOG4445|consensus
Probab=93.51 E-value=0.022 Score=50.06 Aligned_cols=53 Identities=28% Similarity=0.665 Sum_probs=38.7
Q ss_pred CCCccccccCCCCCC-c--EEcCCCccccHHHHHHHHHhCC-------------------CCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRA-P--QMTRCGHCFCWPCILHYLALSD-------------------KSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~-p--~~~~CgH~FC~~Ci~~~~~~~~-------------------~~~~~CP~Cr~~~~~ 134 (243)
.....|.|||.-|.+ | ..|+|-|-|+..|+.+|+..-. .-...||+||..+..
T Consensus 113 ~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 113 HPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 345689999987654 3 3479999999999999886310 011579999988764
No 86
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.60 E-value=0.09 Score=47.05 Aligned_cols=52 Identities=19% Similarity=0.536 Sum_probs=35.8
Q ss_pred CccccccCCCCCC--cEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCc
Q psy3978 84 DIKCPICLDLPRA--PQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLK 138 (243)
Q Consensus 84 ~~~CpICl~~~~~--p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~ 138 (243)
+..||+|++.+.. --. -+||-..|.-|....-..-. ..||.||......+++
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~ln---grcpacrr~y~denv~ 69 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLN---GRCPACRRKYDDENVR 69 (480)
T ss_pred cccCcccccccccccCCcccCCcccHHHHHHHHHHHhhcc---CCChHhhhhcccccee
Confidence 3349999997643 222 36898888888765444333 6899999988766544
No 87
>KOG2932|consensus
Probab=92.57 E-value=0.039 Score=48.72 Aligned_cols=43 Identities=33% Similarity=0.613 Sum_probs=30.5
Q ss_pred CccccccCCCC-CCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 84 DIKCPICLDLP-RAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 84 ~~~CpICl~~~-~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
.-.|.-|--.+ .-.++++|.|+||..|...- .. +.||.|-..+
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~---~d---K~Cp~C~d~V 133 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARSD---SD---KICPLCDDRV 133 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhcC---cc---ccCcCcccHH
Confidence 34677777643 44678999999999997521 11 6899997554
No 88
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=92.36 E-value=0.042 Score=46.85 Aligned_cols=50 Identities=26% Similarity=0.617 Sum_probs=37.9
Q ss_pred CCccccccCC-CCCCcEE--c--C-CCccccHHHHHHHHHhCCCCCCCCC--CCCccccCC
Q psy3978 83 EDIKCPICLD-LPRAPQM--T--R-CGHCFCWPCILHYLALSDKSWRKCP--ICYEAVHLG 135 (243)
Q Consensus 83 ~~~~CpICl~-~~~~p~~--~--~-CgH~FC~~Ci~~~~~~~~~~~~~CP--~Cr~~~~~~ 135 (243)
.+..||||.. .+-.|-+ + | |-|..|-+|+.+.+..+. ..|| -|.+.+...
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~Gp---AqCP~~gC~kILRK~ 66 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGP---AQCPYKGCGKILRKI 66 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCC---CCCCCccHHHHHHHh
Confidence 4568999997 3444422 2 4 999999999999998876 7999 787766543
No 89
>KOG2114|consensus
Probab=92.22 E-value=0.082 Score=52.45 Aligned_cols=39 Identities=31% Similarity=0.716 Sum_probs=33.5
Q ss_pred ccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 85 IKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 85 ~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
..|..|-..+.-|++ ..|||+|+..|+. .+. ..||.|+.
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~---~~CP~C~~ 880 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKE---DKCPKCLP 880 (933)
T ss_pred eeecccCCccccceeeeecccHHHHHhhc----cCc---ccCCccch
Confidence 589999999999977 7999999999987 222 79999977
No 90
>KOG3039|consensus
Probab=92.13 E-value=0.12 Score=44.26 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=33.3
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALS 118 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~ 118 (243)
+.+...|..|+..+.+|++++=||.||..||.+++..+
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ilaq 77 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILAQ 77 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHHH
Confidence 34556789999999999999999999999999988654
No 91
>KOG0298|consensus
Probab=91.91 E-value=0.04 Score=56.82 Aligned_cols=48 Identities=35% Similarity=0.726 Sum_probs=41.0
Q ss_pred CCCCccccccCCCCC-CcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 81 GNEDIKCPICLDLPR-APQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 81 ~~~~~~CpICl~~~~-~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
..+...|+||++.+. ...+..|||.+|..|+..|+..+ ..||.|....
T Consensus 1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~----s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS----SRCPICKSIK 1198 (1394)
T ss_pred hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh----ccCcchhhhh
Confidence 445668999999887 56778999999999999999998 7999997543
No 92
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.18 E-value=0.09 Score=41.08 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=27.3
Q ss_pred CccccccCCCCCC--cEE-cCCC------ccccHHHHHHHHHhC
Q psy3978 84 DIKCPICLDLPRA--PQM-TRCG------HCFCWPCILHYLALS 118 (243)
Q Consensus 84 ~~~CpICl~~~~~--p~~-~~Cg------H~FC~~Ci~~~~~~~ 118 (243)
..+|.||++...+ .++ ++|| |.||..|+.+|-...
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~ 69 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER 69 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence 6789999997766 655 5665 789999999995443
No 93
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.17 E-value=0.21 Score=31.24 Aligned_cols=40 Identities=25% Similarity=0.613 Sum_probs=24.1
Q ss_pred ccccCCCCCCcEEc---CCCccccHHHHHHHHHhCCCCCCCCCCC
Q psy3978 87 CPICLDLPRAPQMT---RCGHCFCWPCILHYLALSDKSWRKCPIC 128 (243)
Q Consensus 87 CpICl~~~~~p~~~---~CgH~FC~~Ci~~~~~~~~~~~~~CP~C 128 (243)
|.+|.++....+.= .|+-.++..|+..|+..... ..||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~--~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSN--PKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCC--CCCcCC
Confidence 67888888777763 49989999999999987642 369987
No 94
>KOG1428|consensus
Probab=90.93 E-value=0.19 Score=52.73 Aligned_cols=56 Identities=29% Similarity=0.530 Sum_probs=40.4
Q ss_pred CCCccccccCCC--CCCcE-EcCCCccccHHHHHHHHHhCCC------CCCCCCCCCccccCCCC
Q psy3978 82 NEDIKCPICLDL--PRAPQ-MTRCGHCFCWPCILHYLALSDK------SWRKCPICYEAVHLGDL 137 (243)
Q Consensus 82 ~~~~~CpICl~~--~~~p~-~~~CgH~FC~~Ci~~~~~~~~~------~~~~CP~Cr~~~~~~~l 137 (243)
..+..|-||+.. -..|. .+.|+|.|+..|..+.++++=. +...||+|..++..--+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~L 3548 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVL 3548 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHH
Confidence 456679999973 33454 4899999999999988876521 12479999988865433
No 95
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=90.29 E-value=0.41 Score=38.46 Aligned_cols=50 Identities=22% Similarity=0.423 Sum_probs=36.6
Q ss_pred CCCCccccccCCCCCCcEEcCCC--c---cccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCG--H---CFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~Cg--H---~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
+..+..|=||.+... +..-||. . .-+.+|+.+|+..+.. ..|+.|...+.
T Consensus 5 s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~--~~CeiC~~~Y~ 59 (162)
T PHA02825 5 SLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKN--KSCKICNGPYN 59 (162)
T ss_pred CCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCC--CcccccCCeEE
Confidence 456778999998754 3334654 3 2389999999997643 78999998765
No 96
>KOG3970|consensus
Probab=90.04 E-value=0.32 Score=41.27 Aligned_cols=52 Identities=21% Similarity=0.473 Sum_probs=39.9
Q ss_pred CCccccccCCCCCC--cEEcCCCccccHHHHHHHHHhCCC----CCCCCCCCCccccC
Q psy3978 83 EDIKCPICLDLPRA--PQMTRCGHCFCWPCILHYLALSDK----SWRKCPICYEAVHL 134 (243)
Q Consensus 83 ~~~~CpICl~~~~~--p~~~~CgH~FC~~Ci~~~~~~~~~----~~~~CP~Cr~~~~~ 134 (243)
-...|..|...+.. .+.+-|-|.|++.|+.+|-.+-.. .+..||.|...+-.
T Consensus 49 Y~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 49 YNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 34569999997764 455789999999999999875432 13689999887754
No 97
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=89.20 E-value=0.28 Score=44.66 Aligned_cols=36 Identities=22% Similarity=0.606 Sum_probs=26.6
Q ss_pred CCccccHHHHHHHHHhCC---------CCCCCCCCCCccccCCCC
Q psy3978 102 CGHCFCWPCILHYLALSD---------KSWRKCPICYEAVHLGDL 137 (243)
Q Consensus 102 CgH~FC~~Ci~~~~~~~~---------~~~~~CP~Cr~~~~~~~l 137 (243)
|....|..|+-+|+..++ .+...||+||+.+...|+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 344558899999998654 133689999999876654
No 98
>KOG1940|consensus
Probab=88.41 E-value=0.29 Score=42.94 Aligned_cols=45 Identities=27% Similarity=0.767 Sum_probs=35.2
Q ss_pred CCCccccccCCCC----CCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 82 NEDIKCPICLDLP----RAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 82 ~~~~~CpICl~~~----~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
..+..||||.+.+ ..|..++|||.-...|+......+ ..||+|.+
T Consensus 156 ~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~----y~CP~C~~ 204 (276)
T KOG1940|consen 156 SSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG----YTCPICSK 204 (276)
T ss_pred cccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC----CCCCcccc
Confidence 3455699999854 456668999999988888776654 89999977
No 99
>KOG3579|consensus
Probab=88.10 E-value=0.31 Score=42.72 Aligned_cols=39 Identities=21% Similarity=0.660 Sum_probs=33.7
Q ss_pred CCCCccccccCCCCCCcEEcCC----CccccHHHHHHHHHhCC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRC----GHCFCWPCILHYLALSD 119 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~C----gH~FC~~Ci~~~~~~~~ 119 (243)
....+.|.+|.+.+.+...+.| .|.||..|-.+.++.+.
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg 307 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQG 307 (352)
T ss_pred CCCceeehhhhhhhccCceeecCCCcccceecccCHHHHHhhc
Confidence 3456999999999999888777 69999999999998765
No 100
>KOG3899|consensus
Probab=87.68 E-value=0.31 Score=42.86 Aligned_cols=37 Identities=19% Similarity=0.635 Sum_probs=28.0
Q ss_pred CCccccHHHHHHHHHhCC---------CCCCCCCCCCccccCCCCc
Q psy3978 102 CGHCFCWPCILHYLALSD---------KSWRKCPICYEAVHLGDLK 138 (243)
Q Consensus 102 CgH~FC~~Ci~~~~~~~~---------~~~~~CP~Cr~~~~~~~l~ 138 (243)
|....|.+|+.+|+.... ++...||+||+.+...++.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~ 370 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVH 370 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeee
Confidence 556678899999997653 2347999999998776643
No 101
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=87.55 E-value=0.35 Score=30.79 Aligned_cols=40 Identities=33% Similarity=0.806 Sum_probs=24.8
Q ss_pred ccccCCCCC--CcEEcCCCc-----cccHHHHHHHHHhCCCCCCCCCCC
Q psy3978 87 CPICLDLPR--APQMTRCGH-----CFCWPCILHYLALSDKSWRKCPIC 128 (243)
Q Consensus 87 CpICl~~~~--~p~~~~CgH-----~FC~~Ci~~~~~~~~~~~~~CP~C 128 (243)
|-||++.-. .|.+.||+- ..+..|+.+|+..+.. ..|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~--~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGN--RKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT---SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCC--CcCCCC
Confidence 668887432 256777652 4578999999997542 578887
No 102
>KOG1952|consensus
Probab=87.06 E-value=1.3 Score=44.40 Aligned_cols=51 Identities=31% Similarity=0.684 Sum_probs=39.7
Q ss_pred cCCCCccccccCCCCC--CcEE--cCCCccccHHHHHHHHHhCCC---CCCCCCCCCc
Q psy3978 80 FGNEDIKCPICLDLPR--APQM--TRCGHCFCWPCILHYLALSDK---SWRKCPICYE 130 (243)
Q Consensus 80 ~~~~~~~CpICl~~~~--~p~~--~~CgH~FC~~Ci~~~~~~~~~---~~~~CP~Cr~ 130 (243)
...+.++|-||.+.+. .|+. ..|-|+|...||.+|-...+. ....||.|..
T Consensus 187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs 244 (950)
T KOG1952|consen 187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS 244 (950)
T ss_pred HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence 3678899999999764 4554 368999999999999886432 3478999984
No 103
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=86.90 E-value=0.38 Score=42.74 Aligned_cols=50 Identities=26% Similarity=0.403 Sum_probs=37.6
Q ss_pred CCCCccccccCCCC---CCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 81 GNEDIKCPICLDLP---RAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 81 ~~~~~~CpICl~~~---~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
....+.||+=-+.- ..|+++.|||+.-..-+.+...++. -.+.||.|...
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~-~~FKCPYCP~~ 385 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGV-LSFKCPYCPEM 385 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCc-EEeeCCCCCcc
Confidence 45678999866643 4589999999999998887665543 23899999654
No 104
>KOG1812|consensus
Probab=86.89 E-value=0.34 Score=44.72 Aligned_cols=54 Identities=28% Similarity=0.712 Sum_probs=36.1
Q ss_pred CCccccccC-CCCCCcE---EcCCCccccHHHHHHHHHhCC--CCCCCCCC--CCccccCCC
Q psy3978 83 EDIKCPICL-DLPRAPQ---MTRCGHCFCWPCILHYLALSD--KSWRKCPI--CYEAVHLGD 136 (243)
Q Consensus 83 ~~~~CpICl-~~~~~p~---~~~CgH~FC~~Ci~~~~~~~~--~~~~~CP~--Cr~~~~~~~ 136 (243)
...+|.||. +.+.... +..|+|.||..|+.+++.... +....||. |...+....
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~ 206 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLES 206 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHH
Confidence 357899999 4433322 357999999999999998552 22256764 655555443
No 105
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=84.82 E-value=0.29 Score=31.21 Aligned_cols=34 Identities=29% Similarity=0.808 Sum_probs=22.9
Q ss_pred cEEcCCC-ccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 97 PQMTRCG-HCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 97 p~~~~Cg-H~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
--.+.|. |-.|..|+...+..+ ..||+|..+++.
T Consensus 13 k~Li~C~dHYLCl~CLt~ml~~s----~~C~iC~~~LPt 47 (50)
T PF03854_consen 13 KGLIKCSDHYLCLNCLTLMLSRS----DRCPICGKPLPT 47 (50)
T ss_dssp SSEEE-SS-EEEHHHHHHT-SSS----SEETTTTEE---
T ss_pred CCeeeecchhHHHHHHHHHhccc----cCCCcccCcCcc
Confidence 3356786 888999999888776 589999988764
No 106
>KOG3268|consensus
Probab=84.45 E-value=0.92 Score=37.15 Aligned_cols=53 Identities=25% Similarity=0.565 Sum_probs=36.0
Q ss_pred CCCccccccCCCCCCcEE-------cCCCccccHHHHHHHHHhCC--C-----CCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRAPQM-------TRCGHCFCWPCILHYLALSD--K-----SWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~-------~~CgH~FC~~Ci~~~~~~~~--~-----~~~~CP~Cr~~~~~ 134 (243)
.+...|-||..+--+..+ ..||..|+.-|+..|++.-- + -...||.|-.++..
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 444568888765433322 46999999999999997421 0 01379999887754
No 107
>PHA02862 5L protein; Provisional
Probab=84.27 E-value=1.2 Score=35.31 Aligned_cols=47 Identities=23% Similarity=0.538 Sum_probs=34.4
Q ss_pred ccccccCCCCCCcEEcCCCc-----cccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 85 IKCPICLDLPRAPQMTRCGH-----CFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 85 ~~CpICl~~~~~p~~~~CgH-----~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..|=||.+.-.+. .-||.- --+..|+.+|+..+.+ ..|+.|+.+...
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k--~~CeLCkteY~I 54 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKK--KECNLCKTKYNI 54 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCC--cCccCCCCeEEE
Confidence 3589999875444 356542 3478999999986643 799999988754
No 108
>KOG1815|consensus
Probab=83.93 E-value=0.76 Score=43.18 Aligned_cols=54 Identities=33% Similarity=0.610 Sum_probs=38.7
Q ss_pred CCCccccccCCCCCC-cEEcCCCccccHHHHHHHHHhCCC--CC--CCCC--CCCccccCC
Q psy3978 82 NEDIKCPICLDLPRA-PQMTRCGHCFCWPCILHYLALSDK--SW--RKCP--ICYEAVHLG 135 (243)
Q Consensus 82 ~~~~~CpICl~~~~~-p~~~~CgH~FC~~Ci~~~~~~~~~--~~--~~CP--~Cr~~~~~~ 135 (243)
....+|.||.+.+.. ...+.|||.||..|...++...-. .. ..|| -|.+.+...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~ 128 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGED 128 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCc
Confidence 556789999998775 555799999999999999986421 11 3455 466666543
No 109
>KOG2169|consensus
Probab=83.62 E-value=1.5 Score=43.21 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=55.1
Q ss_pred CCccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHhhhccCccceeeeeee
Q psy3978 83 EDIKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKRARAVNEEVTFQLMKR 161 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~~~~~~~~~~l~l~~r 161 (243)
-.+.|||+...+.-|.. ..|+|.-|.+-..-.-.+..++...||+|.+......+........+.....+. ...+...
T Consensus 305 vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l~iD~~~~~iL~~~~~~-~~ev~~~ 383 (636)
T KOG2169|consen 305 VSLNCPLSKMRMSLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGLIIDGYFLNILQSCQAN-VEEVEVS 383 (636)
T ss_pred eEecCCcccceeecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccchhhhHHHHHHHhhccCC-CcceEec
Confidence 45789998887666654 679998888765433334445668999999988877776555544444333332 1222333
Q ss_pred cCCCeeEeeccC
Q psy3978 162 ERGSTVVSPVAQ 173 (243)
Q Consensus 162 ~~~~~~~~~~s~ 173 (243)
.+|+-.+++.+.
T Consensus 384 ~dGsw~pi~~~~ 395 (636)
T KOG2169|consen 384 EDGSWKPIPEEA 395 (636)
T ss_pred CCCceecCcccc
Confidence 346655555554
No 110
>KOG1100|consensus
Probab=82.37 E-value=0.49 Score=39.90 Aligned_cols=39 Identities=31% Similarity=0.732 Sum_probs=30.5
Q ss_pred ccccCCCCCCcEEcCCCc-cccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 87 CPICLDLPRAPQMTRCGH-CFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 87 CpICl~~~~~p~~~~CgH-~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
|-.|.+.-..-..+||.| .+|..|-.. ...||+|+.+..
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~--------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES--------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc--------CccCCCCcChhh
Confidence 999998877766789997 889999432 167999987654
No 111
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.40 E-value=1.8 Score=30.14 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=28.5
Q ss_pred CccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHH
Q psy3978 103 GHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVI 144 (243)
Q Consensus 103 gH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~ 144 (243)
.|+||..|....+. ..||.|...+..+.+++...+.
T Consensus 28 EcTFCadCae~~l~------g~CPnCGGelv~RP~RPaa~L~ 63 (84)
T COG3813 28 ECTFCADCAENRLH------GLCPNCGGELVARPIRPAAKLA 63 (84)
T ss_pred eeehhHhHHHHhhc------CcCCCCCchhhcCcCChHHHHh
Confidence 47899999987664 5899999999888877765543
No 112
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=77.69 E-value=2.4 Score=27.96 Aligned_cols=46 Identities=22% Similarity=0.424 Sum_probs=29.5
Q ss_pred cccccCCCCCC-c-EEcCCC--ccccHHHHHHHHHhCCCCCCCCCCCCccccCCCC
Q psy3978 86 KCPICLDLPRA-P-QMTRCG--HCFCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137 (243)
Q Consensus 86 ~CpICl~~~~~-p-~~~~Cg--H~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l 137 (243)
.|-.|-..+.. . --.-|. .+||..|....+. ..||.|...+..+..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~------~~CPNCgGelv~RP~ 56 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLN------GVCPNCGGELVRRPR 56 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhc------CcCcCCCCccccCCC
Confidence 46666654321 1 112233 3799999998774 589999988776543
No 113
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=77.40 E-value=0.063 Score=37.16 Aligned_cols=41 Identities=27% Similarity=0.582 Sum_probs=22.3
Q ss_pred CccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
++.||.|...+.. .. ||.+|..|-..+... ..||-|..++.
T Consensus 1 e~~CP~C~~~L~~---~~-~~~~C~~C~~~~~~~-----a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELEW---QG-GHYHCEACQKDYKKE-----AFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEEE---ET-TEEEETTT--EEEEE-----EE-TTT-SB-E
T ss_pred CCcCCCCCCccEE---eC-CEEECccccccceec-----ccCCCcccHHH
Confidence 3579999987432 12 888899897765443 58999988764
No 114
>KOG2034|consensus
Probab=76.04 E-value=1.7 Score=43.71 Aligned_cols=36 Identities=25% Similarity=0.538 Sum_probs=28.7
Q ss_pred CCCCccccccCCC-CCCcEE-cCCCccccHHHHHHHHH
Q psy3978 81 GNEDIKCPICLDL-PRAPQM-TRCGHCFCWPCILHYLA 116 (243)
Q Consensus 81 ~~~~~~CpICl~~-~~~p~~-~~CgH~FC~~Ci~~~~~ 116 (243)
.+..-.|.+|... +..|.+ .+|||.|++.||.+...
T Consensus 814 ~ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 814 LEPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred ecCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 4566789999985 456655 59999999999987765
No 115
>KOG3113|consensus
Probab=75.44 E-value=3.1 Score=36.05 Aligned_cols=50 Identities=20% Similarity=0.353 Sum_probs=38.5
Q ss_pred CCCccccccCCCCCCc----EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCC
Q psy3978 82 NEDIKCPICLDLPRAP----QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p----~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l 137 (243)
...+.|||-.-.|..- ..-+|||+|-..-+.+.-. ..|++|.+.+...+.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeika------s~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKA------SVCHVCGAAYQEDDV 162 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhh------ccccccCCcccccCe
Confidence 4678899987777654 3358999999988876542 689999999887664
No 116
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=70.68 E-value=2.4 Score=23.50 Aligned_cols=21 Identities=29% Similarity=0.578 Sum_probs=10.0
Q ss_pred cccccCCCCCCcEE-c-CCCccc
Q psy3978 86 KCPICLDLPRAPQM-T-RCGHCF 106 (243)
Q Consensus 86 ~CpICl~~~~~p~~-~-~CgH~F 106 (243)
.||-|......... = .|||.|
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCCC
Confidence 36777664432222 1 256554
No 117
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=70.46 E-value=1.9 Score=27.96 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
+.+.||.|.+.+... .++.-|........ ....||+|...
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~--~~v~CPiC~~~ 40 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSES--KNVVCPICSSR 40 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCC--CCccCCCchhh
Confidence 357899999854422 12233333322221 23789999764
No 118
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=68.78 E-value=1.1 Score=40.12 Aligned_cols=43 Identities=28% Similarity=0.552 Sum_probs=32.5
Q ss_pred CccccccCCCCCCcEEcC----CC--ccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 84 DIKCPICLDLPRAPQMTR----CG--HCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~~----Cg--H~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
.-.||||...+...++.. =| +.+|.-|-.+|-..+ ..||.|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R----~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVR----VKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccC----ccCCCCCC
Confidence 458999999876655422 33 677889988887766 79999975
No 119
>KOG2979|consensus
Probab=67.69 E-value=2.6 Score=36.47 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=36.5
Q ss_pred CCCccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCCCCCCCCCCCC
Q psy3978 82 NEDIKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPICY 129 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr 129 (243)
.=.++|||=.....+|++ ..|||+|=+.-|..++.... ...||+=.
T Consensus 174 ~fs~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~--~i~CPv~g 220 (262)
T KOG2979|consen 174 VFSNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEI--TIRCPVLG 220 (262)
T ss_pred hhcccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCc--eeeccccc
Confidence 345789999888999987 68999999999999887532 26788743
No 120
>KOG0825|consensus
Probab=65.60 E-value=3.6 Score=41.10 Aligned_cols=50 Identities=16% Similarity=0.219 Sum_probs=33.6
Q ss_pred CCccccccCCCCCCcE----EcC---CCccccHHHHHHHHHhCC--CCCCCCCCCCccc
Q psy3978 83 EDIKCPICLDLPRAPQ----MTR---CGHCFCWPCILHYLALSD--KSWRKCPICYEAV 132 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~----~~~---CgH~FC~~Ci~~~~~~~~--~~~~~CP~Cr~~~ 132 (243)
+..+|++|...+..|+ +.+ |+|.||..||..|..+-. .....|++|..-|
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 4456777776666532 233 999999999999987542 2225677776544
No 121
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=64.96 E-value=0.67 Score=40.99 Aligned_cols=45 Identities=24% Similarity=0.515 Sum_probs=23.2
Q ss_pred CCccccccCCCCCCcEEcCC---C--ccccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 83 EDIKCPICLDLPRAPQMTRC---G--HCFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~~C---g--H~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
..-.||||...+...++..= | |.+|.-|-.+|-..+ ..||.|...
T Consensus 171 ~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R----~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVR----IKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---EEEEEEE------EEEEEETTT--EEE--T----TS-TTT---
T ss_pred cCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecC----CCCcCCCCC
Confidence 34689999998776666433 3 678999999987665 789999664
No 122
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=63.39 E-value=5.1 Score=27.37 Aligned_cols=14 Identities=21% Similarity=0.681 Sum_probs=10.1
Q ss_pred cccHHHHHHHHHhC
Q psy3978 105 CFCWPCILHYLALS 118 (243)
Q Consensus 105 ~FC~~Ci~~~~~~~ 118 (243)
.||+.|+.+|....
T Consensus 11 gFCRNCLskWy~~a 24 (68)
T PF06844_consen 11 GFCRNCLSKWYREA 24 (68)
T ss_dssp S--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999753
No 123
>KOG1812|consensus
Probab=61.22 E-value=4 Score=37.69 Aligned_cols=43 Identities=28% Similarity=0.634 Sum_probs=30.2
Q ss_pred CCCccccccCCCCCC-----cEEcCCCccccHHHHHHHHHhCCCCCCCCCCC
Q psy3978 82 NEDIKCPICLDLPRA-----PQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128 (243)
Q Consensus 82 ~~~~~CpICl~~~~~-----p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~C 128 (243)
.....||+|.....- -++-.|||-||+.|...|...+ ..|..|
T Consensus 304 ~~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~----~~~~~~ 351 (384)
T KOG1812|consen 304 KRWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHN----GECYEC 351 (384)
T ss_pred HhcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCC----ccccCc
Confidence 456789999975432 2333599999999999887765 455544
No 124
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=58.90 E-value=3 Score=37.35 Aligned_cols=44 Identities=23% Similarity=0.558 Sum_probs=33.2
Q ss_pred CCccccccCCCCCCcEEc---CCC--ccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 83 EDIKCPICLDLPRAPQMT---RCG--HCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~---~Cg--H~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
..-.||||...+...++. .=| +.+|.-|-.+|-..+ ..||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R----~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVR----VKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccC----ccCCCCCC
Confidence 457899999987766542 233 567899988887766 79999975
No 125
>KOG4718|consensus
Probab=56.06 E-value=6 Score=33.40 Aligned_cols=44 Identities=25% Similarity=0.469 Sum_probs=35.4
Q ss_pred CccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 84 DIKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
.-.|.+|..+....+. -.||-.+...|+..++... ..||.|..-
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~----~~cphc~d~ 225 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRR----DICPHCGDL 225 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhccc----CcCCchhcc
Confidence 4579999998776654 4688888999999999875 689999653
No 126
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=54.44 E-value=11 Score=37.94 Aligned_cols=51 Identities=22% Similarity=0.617 Sum_probs=37.6
Q ss_pred CCCccccccCC--CCCCcEEcCCCcc-----ccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLD--LPRAPQMTRCGHC-----FCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~--~~~~p~~~~CgH~-----FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
++...|-||.. ...+|..-||..+ .+..|+.+|+..+.. ..|-+|..++.-
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~--~kCdiChy~~~F 67 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGT--KKCDICHYEYKF 67 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCC--cceeeecceeee
Confidence 45578999986 4556766676532 478999999996643 799999877653
No 127
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the KOG2068|consensus
Probab=53.03 E-value=12 Score=33.72 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=33.9
Q ss_pred CccccccCCCCC--CcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 84 DIKCPICLDLPR--APQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 84 ~~~CpICl~~~~--~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
...||||-+... +... .+||+..|+.|+....... ..||.||.+...
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~----~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGD----GRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccC----CCCCccCCcccc
Confidence 467999999662 2222 3689888999987766555 799999965543
No 129
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=52.83 E-value=17 Score=23.84 Aligned_cols=30 Identities=27% Similarity=0.562 Sum_probs=23.3
Q ss_pred CCccccccCCCC--CCcEE--cCCCccccHHHHH
Q psy3978 83 EDIKCPICLDLP--RAPQM--TRCGHCFCWPCIL 112 (243)
Q Consensus 83 ~~~~CpICl~~~--~~p~~--~~CgH~FC~~Ci~ 112 (243)
....|++|.+.| .+.++ ..||-.+++.|..
T Consensus 4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred cCccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 345699999988 55555 3799999999954
No 130
>PF14353 CpXC: CpXC protein
Probab=52.78 E-value=9.3 Score=29.28 Aligned_cols=49 Identities=22% Similarity=0.105 Sum_probs=26.2
Q ss_pred ccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 85 IKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 85 ~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
++||-|...+...+-+.-.-..=..=....+... =-...||.|...+..
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~-l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGS-LFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCC-cCEEECCCCCCceec
Confidence 5799998877655443322222222233333221 112689999887653
No 131
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=50.98 E-value=23 Score=26.50 Aligned_cols=30 Identities=23% Similarity=0.495 Sum_probs=21.3
Q ss_pred CccccHHHHHHHHHhC-----CCCCCCCCCCCccc
Q psy3978 103 GHCFCWPCILHYLALS-----DKSWRKCPICYEAV 132 (243)
Q Consensus 103 gH~FC~~Ci~~~~~~~-----~~~~~~CP~Cr~~~ 132 (243)
.-.||..||...+... ......||.|+..-
T Consensus 37 ~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 37 RGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred cceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 6679999998776542 12337899998743
No 132
>KOG2231|consensus
Probab=50.30 E-value=13 Score=36.67 Aligned_cols=49 Identities=29% Similarity=0.640 Sum_probs=37.8
Q ss_pred cccccCCCCCCcEEcCCCc-cccHHHHHHHHHhCC--CCCCCCCCCCccccC
Q psy3978 86 KCPICLDLPRAPQMTRCGH-CFCWPCILHYLALSD--KSWRKCPICYEAVHL 134 (243)
Q Consensus 86 ~CpICl~~~~~p~~~~CgH-~FC~~Ci~~~~~~~~--~~~~~CP~Cr~~~~~ 134 (243)
.|+||-.-+.-+..-.||| ..|..|..+...... +....||+|+..+..
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~~ 53 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVET 53 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccceee
Confidence 4999999888777789999 999999988665443 223578999986643
No 133
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=49.66 E-value=11 Score=24.17 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=22.1
Q ss_pred ccccccCCCCCCc----EEcCCCccccHHHHHHHHH
Q psy3978 85 IKCPICLDLPRAP----QMTRCGHCFCWPCILHYLA 116 (243)
Q Consensus 85 ~~CpICl~~~~~p----~~~~CgH~FC~~Ci~~~~~ 116 (243)
..|.+|...|..- .-..||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 3588888765432 1247999999999875543
No 134
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=48.48 E-value=11 Score=24.42 Aligned_cols=25 Identities=28% Similarity=0.911 Sum_probs=13.2
Q ss_pred CCCccccHHHHHHHHHhCCCCCCCCCCCC
Q psy3978 101 RCGHCFCWPCILHYLALSDKSWRKCPICY 129 (243)
Q Consensus 101 ~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr 129 (243)
.|++.||..|=. ++-.. ...||-|.
T Consensus 26 ~C~~~FC~dCD~-fiHE~---LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCDV-FIHET---LHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHHH-TTTTT---S-SSSTT-
T ss_pred CCCCccccCcCh-hhhcc---ccCCcCCC
Confidence 689999999943 22222 26899884
No 135
>KOG0309|consensus
Probab=46.53 E-value=11 Score=37.59 Aligned_cols=24 Identities=29% Similarity=0.768 Sum_probs=20.7
Q ss_pred cCCCccccHHHHHHHHHhCCCCCCCCCC
Q psy3978 100 TRCGHCFCWPCILHYLALSDKSWRKCPI 127 (243)
Q Consensus 100 ~~CgH~FC~~Ci~~~~~~~~~~~~~CP~ 127 (243)
..|||..+.+|...|++.+. .||.
T Consensus 1046 g~C~Hv~H~sc~~eWf~~gd----~Cps 1069 (1081)
T KOG0309|consen 1046 GTCGHVGHTSCMMEWFRTGD----VCPS 1069 (1081)
T ss_pred ccccccccHHHHHHHHhcCC----cCCC
Confidence 36999999999999999884 7874
No 136
>KOG3842|consensus
Probab=45.76 E-value=17 Score=32.61 Aligned_cols=51 Identities=24% Similarity=0.627 Sum_probs=30.8
Q ss_pred CCCccccccCCCC-C-------C---------c--EEcCCCccccHHHHHHHHHhCCC------CCCCCCCCCcccc
Q psy3978 82 NEDIKCPICLDLP-R-------A---------P--QMTRCGHCFCWPCILHYLALSDK------SWRKCPICYEAVH 133 (243)
Q Consensus 82 ~~~~~CpICl~~~-~-------~---------p--~~~~CgH~FC~~Ci~~~~~~~~~------~~~~CP~Cr~~~~ 133 (243)
..+..||+|+..- . + | ...||||. |..=-..||.+-.- -...||.|...+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv-~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV-CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc-cchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 4577899999631 0 1 1 22489995 55555566664321 1257999977654
No 137
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=45.27 E-value=3.3 Score=28.05 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=14.7
Q ss_pred CCccccccCCCCCCcE--E--cCCCccccHHHHH
Q psy3978 83 EDIKCPICLDLPRAPQ--M--TRCGHCFCWPCIL 112 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~--~--~~CgH~FC~~Ci~ 112 (243)
+...|.+|...|.--. . -.||++||..|..
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 4457999999874321 1 3699999988864
No 138
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.26 E-value=7.9 Score=35.70 Aligned_cols=49 Identities=27% Similarity=0.572 Sum_probs=0.4
Q ss_pred CCCCccccccCCCCCCc--------------EEcCCCccccHHHHHHHHHhCCC--CCCCCCCCCccc
Q psy3978 81 GNEDIKCPICLDLPRAP--------------QMTRCGHCFCWPCILHYLALSDK--SWRKCPICYEAV 132 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p--------------~~~~CgH~FC~~Ci~~~~~~~~~--~~~~CP~Cr~~~ 132 (243)
.....+||+=+..+.-| +.+.|||++-+. .|-...+. ....||+|+..-
T Consensus 274 Na~rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 274 NAGRPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp S-------------------------------------------------------------------
T ss_pred hhcCCCCCcCCCccccccccccccccccCceeeccccceeeec---ccccccccccccccCCCccccC
Confidence 44567899988755433 336799988764 45432221 237999998753
No 139
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=42.82 E-value=18 Score=26.40 Aligned_cols=37 Identities=27% Similarity=0.714 Sum_probs=27.1
Q ss_pred CccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.-.|-||-..+..+ ||.||..|.. .. ..|.+|...+.
T Consensus 44 ~~~C~~CK~~v~q~-----g~~YCq~CAY-----kk---GiCamCGKki~ 80 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAKYCQTCAY-----KK---GICAMCGKKIL 80 (90)
T ss_pred CccccccccccccC-----CCccChhhhc-----cc---CcccccCCeec
Confidence 34699998755543 7899999953 22 58999998774
No 140
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=42.49 E-value=37 Score=24.02 Aligned_cols=49 Identities=22% Similarity=0.433 Sum_probs=19.8
Q ss_pred CCCccccccCCCCC-----CcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 82 NEDIKCPICLDLPR-----APQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 82 ~~~~~CpICl~~~~-----~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.....|.||.+... ++.+ -.|+--.|+.|..-=.+... ..||.|+....
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~---q~CpqCkt~yk 62 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGN---QVCPQCKTRYK 62 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS----SB-TTT--B--
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCc---ccccccCCCcc
Confidence 34567999998542 2222 25888889999874444443 79999987654
No 141
>KOG1815|consensus
Probab=42.31 E-value=11 Score=35.56 Aligned_cols=19 Identities=32% Similarity=0.663 Sum_probs=14.4
Q ss_pred cEEcCCCccccHHHHHHHH
Q psy3978 97 PQMTRCGHCFCWPCILHYL 115 (243)
Q Consensus 97 p~~~~CgH~FC~~Ci~~~~ 115 (243)
++.-.|||.||+.|...|-
T Consensus 179 ~v~C~~g~~FC~~C~~~~H 197 (444)
T KOG1815|consen 179 EVDCGCGHEFCFACGEESH 197 (444)
T ss_pred ceeCCCCchhHhhcccccc
Confidence 4455799999999976553
No 142
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=42.00 E-value=22 Score=31.33 Aligned_cols=46 Identities=24% Similarity=0.557 Sum_probs=33.8
Q ss_pred CCCccccccCCCCCCcEEc----CCCc--cccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 82 NEDIKCPICLDLPRAPQMT----RCGH--CFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~----~CgH--~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
+....||+|...+...++. .=|- .-|.-|...|..-+ .+|-.|...
T Consensus 183 e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL~CslC~teW~~VR----~KC~nC~~t 234 (308)
T COG3058 183 ESRQYCPVCGSMPVASMVQIGETEQGLRYLHCSLCETEWHYVR----VKCSNCEQS 234 (308)
T ss_pred cccccCCCcCCCCcceeeeecCccccchhhhhhhHHHHHHHHH----HHhcccccc
Confidence 3445899999988776652 2332 34899999999877 689999654
No 143
>KOG0289|consensus
Probab=41.81 E-value=19 Score=33.73 Aligned_cols=54 Identities=28% Similarity=0.474 Sum_probs=45.5
Q ss_pred cccccCCCCCCcEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHH
Q psy3978 86 KCPICLDLPRAPQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSV 143 (243)
Q Consensus 86 ~CpICl~~~~~p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~ 143 (243)
.|.|-.+.+..|++- .-||+|=..-|.+++... ..||+-..++...++.++...
T Consensus 2 ~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~----G~DPIt~~pLs~eelV~Ik~~ 56 (506)
T KOG0289|consen 2 VCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAET----GKDPITNEPLSIEELVEIKVP 56 (506)
T ss_pred eecccCCCCCCccccccccchHHHHHHHHHHHHc----CCCCCCCCcCCHHHeeecccc
Confidence 599999999999985 589999999999999987 689999988887666655443
No 144
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF15616 TerY-C: TerY-C metal binding domain
Probab=40.87 E-value=21 Score=27.87 Aligned_cols=42 Identities=24% Similarity=0.489 Sum_probs=30.2
Q ss_pred CCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
....||-|-..+.-.+- .||+.||..= .....||-|......
T Consensus 76 g~PgCP~CGn~~~fa~C-~CGkl~Ci~g---------~~~~~CPwCg~~g~~ 117 (131)
T PF15616_consen 76 GAPGCPHCGNQYAFAVC-GCGKLFCIDG---------EGEVTCPWCGNEGSF 117 (131)
T ss_pred CCCCCCCCcChhcEEEe-cCCCEEEeCC---------CCCEECCCCCCeeee
Confidence 45789999997655444 8999999631 123799999876543
No 146
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=40.10 E-value=13 Score=36.94 Aligned_cols=53 Identities=26% Similarity=0.501 Sum_probs=36.7
Q ss_pred CCCCccccccCCCCCCcE----------EcCCCccc--------------------cHHHHHHHHHhCCC----CCCCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQ----------MTRCGHCF--------------------CWPCILHYLALSDK----SWRKCP 126 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~----------~~~CgH~F--------------------C~~Ci~~~~~~~~~----~~~~CP 126 (243)
..+.-.|+-|++.+.+|. -|.||..| |..|..+|-.-.++ ....||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 456667999998777652 25788887 99999877653322 126899
Q ss_pred CCCcccc
Q psy3978 127 ICYEAVH 133 (243)
Q Consensus 127 ~Cr~~~~ 133 (243)
.|.-.+.
T Consensus 178 ~CGP~~~ 184 (750)
T COG0068 178 KCGPHLF 184 (750)
T ss_pred ccCCCeE
Confidence 9976554
No 147
>KOG2462|consensus
Probab=39.79 E-value=21 Score=31.37 Aligned_cols=54 Identities=19% Similarity=0.369 Sum_probs=36.5
Q ss_pred CCCccccccCCCCCC-c--------EEcCCCccccHHHHH-HHHHhCC------CCCCCCCCCCccccCC
Q psy3978 82 NEDIKCPICLDLPRA-P--------QMTRCGHCFCWPCIL-HYLALSD------KSWRKCPICYEAVHLG 135 (243)
Q Consensus 82 ~~~~~CpICl~~~~~-p--------~~~~CgH~FC~~Ci~-~~~~~~~------~~~~~CP~Cr~~~~~~ 135 (243)
.....|++|-..+.. | -.++|.-.+|..-+. .||.+.. ++.+.||.|.+.|..+
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence 566889999986542 2 124677777776665 4776542 2338999999999764
No 148
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.50 E-value=23 Score=30.34 Aligned_cols=28 Identities=18% Similarity=0.419 Sum_probs=21.0
Q ss_pred ccHHHHHHHHHhCCCCCCCCCCCCccccCCCC
Q psy3978 106 FCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137 (243)
Q Consensus 106 FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l 137 (243)
-|.+|-...-.+. ..||+|.+....++.
T Consensus 196 ~C~sC~qqIHRNA----PiCPlCK~KsRSrnp 223 (230)
T PF10146_consen 196 TCQSCHQQIHRNA----PICPLCKAKSRSRNP 223 (230)
T ss_pred hhHhHHHHHhcCC----CCCcccccccccCCC
Confidence 4788887766655 799999988776553
No 149
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=39.16 E-value=24 Score=20.12 Aligned_cols=34 Identities=24% Similarity=0.478 Sum_probs=20.0
Q ss_pred ccccCCCCCCc--EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 87 CPICLDLPRAP--QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 87 CpICl~~~~~p--~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
|..|...+... .+..=+..|+..| +.|..|..++
T Consensus 2 C~~C~~~i~~~~~~~~~~~~~~H~~C------------f~C~~C~~~L 37 (39)
T smart00132 2 CAGCGKPIRGGELVLRALGKVWHPEC------------FKCSKCGKPL 37 (39)
T ss_pred ccccCCcccCCcEEEEeCCccccccC------------CCCcccCCcC
Confidence 77777766552 3333345565555 5677776654
No 150
>KOG1819|consensus
Probab=37.29 E-value=18 Score=34.47 Aligned_cols=30 Identities=27% Similarity=0.568 Sum_probs=21.2
Q ss_pred CCCCccccccCCCCCCcEE----cCCCccccHHH
Q psy3978 81 GNEDIKCPICLDLPRAPQM----TRCGHCFCWPC 110 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~----~~CgH~FC~~C 110 (243)
..+...|-.|...|..-+. -.||-+||..|
T Consensus 898 d~~a~~cmacq~pf~afrrrhhcrncggifcg~c 931 (990)
T KOG1819|consen 898 DEDAEQCMACQMPFNAFRRRHHCRNCGGIFCGKC 931 (990)
T ss_pred CCcchhhhhccCcHHHHHHhhhhcccCceeeccc
Confidence 4555678888887754322 47999999877
No 151
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=35.78 E-value=18 Score=28.24 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=13.6
Q ss_pred ccCCCCCCcEEcCCCccccHH
Q psy3978 89 ICLDLPRAPQMTRCGHCFCWP 109 (243)
Q Consensus 89 ICl~~~~~p~~~~CgH~FC~~ 109 (243)
||+..-..-..-.|||+||..
T Consensus 62 i~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 62 ICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEecccccEEEEeccccccCh
Confidence 566644443335899999974
No 152
>KOG2113|consensus
Probab=35.63 E-value=27 Score=31.33 Aligned_cols=44 Identities=7% Similarity=-0.208 Sum_probs=33.0
Q ss_pred CCccccccCCCCCCcEEcCCCc-cccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 83 EDIKCPICLDLPRAPQMTRCGH-CFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~~CgH-~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
..+.|-.|.+-+......+||| .||..|.. +... ..||+|....
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~----~~~~~c~~~~ 386 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASAS----PTSSTCDHND 386 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhh--cccC----Cccccccccc
Confidence 3577888988777667789998 78999976 3333 7999997643
No 153
>COG5242 TFB4 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB4 [Transcription / DNA replication, recombination, and repair]
Probab=35.39 E-value=17 Score=31.19 Aligned_cols=11 Identities=18% Similarity=0.464 Sum_probs=8.1
Q ss_pred CCCCCCCcccc
Q psy3978 123 RKCPICYEAVH 133 (243)
Q Consensus 123 ~~CP~Cr~~~~ 133 (243)
..||.|...+.
T Consensus 275 ~~C~~C~skF~ 285 (296)
T COG5242 275 PVCKKCKSKFS 285 (296)
T ss_pred CcCcccccccc
Confidence 57888877764
No 154
>KOG2807|consensus
Probab=34.71 E-value=31 Score=31.14 Aligned_cols=43 Identities=23% Similarity=0.540 Sum_probs=27.8
Q ss_pred CCccccccCCCCC-CcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCC
Q psy3978 83 EDIKCPICLDLPR-APQM--TRCGHCFCWPCILHYLALSDKSWRKCPICY 129 (243)
Q Consensus 83 ~~~~CpICl~~~~-~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr 129 (243)
....|-.|.+... .+.. -.|.+.||.+|=. ++-..- ..||-|.
T Consensus 329 ~~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv-~iHesL---h~CpgCe 374 (378)
T KOG2807|consen 329 GSRFCFACQGELLSSGRYRCESCKNVFCLDCDV-FIHESL---HNCPGCE 374 (378)
T ss_pred CCcceeeeccccCCCCcEEchhccceeeccchH-HHHhhh---hcCCCcC
Confidence 3445999966443 3333 3799999999954 333332 6899995
No 155
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=33.84 E-value=29 Score=29.83 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=37.8
Q ss_pred CCccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCCCCCCCCCC--CCccccCCCC
Q psy3978 83 EDIKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPI--CYEAVHLGDL 137 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~--Cr~~~~~~~l 137 (243)
-+.+|||-+.....|.. ..|.|.|=.+-|..++.... ...||. |-+.+..+++
T Consensus 188 ~~nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~--trvcp~~~Csq~~~~~~~ 243 (275)
T COG5627 188 LSNRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVEC--TRVCPRLICSQKEVVDPY 243 (275)
T ss_pred hcccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCc--eeecchhhcchheeccch
Confidence 35789998888888876 68999999999998886432 256774 5444443433
No 156
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.73 E-value=25 Score=25.63 Aligned_cols=14 Identities=21% Similarity=0.695 Sum_probs=12.2
Q ss_pred cccHHHHHHHHHhC
Q psy3978 105 CFCWPCILHYLALS 118 (243)
Q Consensus 105 ~FC~~Ci~~~~~~~ 118 (243)
.||+.|+..|....
T Consensus 42 gFCRNCLs~Wy~ea 55 (104)
T COG3492 42 GFCRNCLSNWYREA 55 (104)
T ss_pred HHHHHHHHHHHHHH
Confidence 59999999999864
No 157
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=33.39 E-value=19 Score=23.23 Aligned_cols=13 Identities=23% Similarity=0.639 Sum_probs=6.9
Q ss_pred CCCCCCCccccCC
Q psy3978 123 RKCPICYEAVHLG 135 (243)
Q Consensus 123 ~~CP~Cr~~~~~~ 135 (243)
..||+|..++...
T Consensus 21 ~~CPlC~r~l~~e 33 (54)
T PF04423_consen 21 GCCPLCGRPLDEE 33 (54)
T ss_dssp EE-TTT--EE-HH
T ss_pred CcCCCCCCCCCHH
Confidence 3899999988754
No 158
>KOG4185|consensus
Probab=33.36 E-value=12 Score=32.96 Aligned_cols=44 Identities=34% Similarity=0.652 Sum_probs=35.0
Q ss_pred ccccccCCCCC------CcEEcC--------CCccccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 85 IKCPICLDLPR------APQMTR--------CGHCFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 85 ~~CpICl~~~~------~p~~~~--------CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
..|.||...+. .|.++. |||..|..|+...+.... ..||.|+..
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~---~~cp~~~~~ 265 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG---IKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh---hcCCcccce
Confidence 55889886543 466666 999999999999887764 789999874
No 159
>KOG1356|consensus
Probab=33.15 E-value=13 Score=37.47 Aligned_cols=49 Identities=24% Similarity=0.516 Sum_probs=35.6
Q ss_pred CCCCcccCChhhHhhhhccCCCCccccccCCCCCCc--EEcCCCccccHHHHHHHH
Q psy3978 62 LGDPDQLVKWEYIQQIRGFGNEDIKCPICLDLPRAP--QMTRCGHCFCWPCILHYL 115 (243)
Q Consensus 62 ~~~~~~~~~~~~~~~v~~~~~~~~~CpICl~~~~~p--~~~~CgH~FC~~Ci~~~~ 115 (243)
...++..++|...+. .....|..|.....+- +-..||+.+|..|+..|.
T Consensus 212 ~~~~~~~~a~k~a~~-----g~~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~ 262 (889)
T KOG1356|consen 212 MQRPDQKVAWKRAVK-----GIREMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWY 262 (889)
T ss_pred ccCcccccchhhccc-----CcchhhhhhcccccceeEEccccCCeeeecchhhcc
Confidence 456666777777642 3445799999866553 335799999999999984
No 160
>KOG0801|consensus
Probab=32.68 E-value=13 Score=30.03 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=17.9
Q ss_pred CCCCccccccCCCCCCcE---EcCCCcccc
Q psy3978 81 GNEDIKCPICLDLPRAPQ---MTRCGHCFC 107 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~---~~~CgH~FC 107 (243)
..+.-+|.||+|.+...- .+||-.+|.
T Consensus 174 ~ddkGECvICLEdL~~GdtIARLPCLCIYH 203 (205)
T KOG0801|consen 174 KDDKGECVICLEDLEAGDTIARLPCLCIYH 203 (205)
T ss_pred cccCCcEEEEhhhccCCCceeccceEEEee
Confidence 456678999998776542 267865554
No 161
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=32.34 E-value=25 Score=28.24 Aligned_cols=26 Identities=23% Similarity=0.563 Sum_probs=20.9
Q ss_pred CccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 103 GHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 103 gH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
.+.||..|=.+.+ ..||.|..++.-.
T Consensus 27 ~~~fC~kCG~~tI-------~~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 27 REKFCSKCGAKTI-------TSCPNCSTPIRGD 52 (158)
T ss_pred HHHHHHHhhHHHH-------HHCcCCCCCCCCc
Confidence 3679999988877 4799999888643
No 162
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=32.14 E-value=31 Score=19.87 Aligned_cols=8 Identities=38% Similarity=1.099 Sum_probs=6.4
Q ss_pred CCCCCCCc
Q psy3978 123 RKCPICYE 130 (243)
Q Consensus 123 ~~CP~Cr~ 130 (243)
..||+|..
T Consensus 18 ~~CP~Cg~ 25 (33)
T cd00350 18 WVCPVCGA 25 (33)
T ss_pred CcCcCCCC
Confidence 68999966
No 163
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=32.12 E-value=5.9 Score=25.95 Aligned_cols=14 Identities=36% Similarity=1.336 Sum_probs=12.0
Q ss_pred CCCccccHHHHHHH
Q psy3978 101 RCGHCFCWPCILHY 114 (243)
Q Consensus 101 ~CgH~FC~~Ci~~~ 114 (243)
.||+.||..|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 68999999997766
No 164
>KOG4451|consensus
Probab=31.29 E-value=36 Score=29.17 Aligned_cols=28 Identities=18% Similarity=0.470 Sum_probs=20.2
Q ss_pred ccHHHHHHHHHhCCCCCCCCCCCCccccCCCC
Q psy3978 106 FCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137 (243)
Q Consensus 106 FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l 137 (243)
-|.+|-.+.-.+. ..||+|......++.
T Consensus 251 ~ClsChqqIHRNA----PiCPlCKaKsRSrNP 278 (286)
T KOG4451|consen 251 VCLSCHQQIHRNA----PICPLCKAKSRSRNP 278 (286)
T ss_pred HHHHHHHHHhcCC----CCCcchhhccccCCC
Confidence 3788877766554 799999887765543
No 165
>KOG1829|consensus
Probab=30.52 E-value=17 Score=35.38 Aligned_cols=41 Identities=20% Similarity=0.485 Sum_probs=25.7
Q ss_pred CCCccccccCC-----CC-CCcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCC
Q psy3978 82 NEDIKCPICLD-----LP-RAPQM--TRCGHCFCWPCILHYLALSDKSWRKCPICY 129 (243)
Q Consensus 82 ~~~~~CpICl~-----~~-~~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr 129 (243)
...+.|.+|.. .| ...+. ..||+.|+..|+.+ .. ..||.|-
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~s---~~CPrC~ 557 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR----KS---PCCPRCE 557 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc----cC---CCCCchH
Confidence 45677888864 12 11112 36999999999753 21 4599993
No 166
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=29.47 E-value=35 Score=22.83 Aligned_cols=14 Identities=21% Similarity=0.797 Sum_probs=11.4
Q ss_pred CCCCCCCCccccCC
Q psy3978 122 WRKCPICYEAVHLG 135 (243)
Q Consensus 122 ~~~CP~Cr~~~~~~ 135 (243)
++.||+|..++...
T Consensus 3 HkHC~~CG~~Ip~~ 16 (59)
T PF09889_consen 3 HKHCPVCGKPIPPD 16 (59)
T ss_pred CCcCCcCCCcCCcc
Confidence 47899999988754
No 167
>KOG0827|consensus
Probab=28.75 E-value=18 Score=33.37 Aligned_cols=47 Identities=23% Similarity=0.443 Sum_probs=37.1
Q ss_pred ccccccCCCCCCc----EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 85 IKCPICLDLPRAP----QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 85 ~~CpICl~~~~~p----~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
-.|.||...+..- .-+.|||.+...||.+|+... ..||.|+..+...
T Consensus 197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~----~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATK----RKLPSCRRELPKN 247 (465)
T ss_pred hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH----HHhHHHHhhhhhh
Confidence 4688888755432 236799999999999999985 6899999888653
No 168
>KOG1609|consensus
Probab=28.10 E-value=47 Score=29.07 Aligned_cols=49 Identities=16% Similarity=0.441 Sum_probs=35.3
Q ss_pred CccccccCCCCCC----cEEcCCC-----ccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 84 DIKCPICLDLPRA----PQMTRCG-----HCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 84 ~~~CpICl~~~~~----p~~~~Cg-----H~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
+..|-||...... +...+|. +..+..|+..|+..+.. ..|.+|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~--~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGN--ITCEICKSFFIN 135 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccC--eeeeccccccee
Confidence 4789999985533 4556654 34578999999985542 789999876654
No 169
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=27.96 E-value=41 Score=28.10 Aligned_cols=40 Identities=23% Similarity=0.630 Sum_probs=27.1
Q ss_pred CCCccccccCCC-----CCC-cEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 82 NEDIKCPICLDL-----PRA-PQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 82 ~~~~~CpICl~~-----~~~-p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
...+.|.+|.+. |.. .++ -.|+..|+..|..+ ..||.|..
T Consensus 150 ~kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 150 QKGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred hCCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 456888999851 222 122 36999999999762 47999954
No 170
>KOG3053|consensus
Probab=27.92 E-value=34 Score=29.82 Aligned_cols=52 Identities=15% Similarity=0.425 Sum_probs=36.3
Q ss_pred CCCCccccccCCCCCCcEE----cCCC-----ccccHHHHHHHHHhCCC----CCCCCCCCCccc
Q psy3978 81 GNEDIKCPICLDLPRAPQM----TRCG-----HCFCWPCILHYLALSDK----SWRKCPICYEAV 132 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~----~~Cg-----H~FC~~Ci~~~~~~~~~----~~~~CP~Cr~~~ 132 (243)
.+.+..|=||+..=++... -||. |=-+.+|+.+|+.+++. ....||.|+...
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 4567789999986655433 2442 44578999999987653 125899998764
No 171
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=27.62 E-value=3.8 Score=30.34 Aligned_cols=48 Identities=31% Similarity=0.708 Sum_probs=15.2
Q ss_pred ccccccCCCC--CCcEEcCC--CccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 85 IKCPICLDLP--RAPQMTRC--GHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 85 ~~CpICl~~~--~~p~~~~C--gH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
..|+||...+ .++....| ||.|= .|...++.-...+.+.|++|...+.
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w~-RC~lT~l~i~~~~~r~C~~C~~~~l 66 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVWP-RCALTFLPIQTPGVRVCPVCGRRAL 66 (99)
T ss_dssp --------------SSEEE-TTS-EEE-B-SSS-SBS-SS-EEE-TTT--EEE
T ss_pred ccccccccccccCCcCEeECCCCCEEe-eeeeeeeeeccCCeeEcCCCCCEEe
Confidence 4699999853 45555545 78873 3444444433333368999987654
No 172
>KOG0824|consensus
Probab=27.60 E-value=18 Score=32.25 Aligned_cols=48 Identities=27% Similarity=0.652 Sum_probs=37.5
Q ss_pred CCCccccccCCCCCCcEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 82 NEDIKCPICLDLPRAPQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.+.-.|-||...+.-|... .|+|-||..|...|.... ..||.|+....
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~----~~~~d~~~~~~ 151 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMG----NDCPDCRGKIS 151 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhh----hccchhhcCcC
Confidence 4556788899888777664 599999999999888876 57888876543
No 173
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.85 E-value=54 Score=24.88 Aligned_cols=41 Identities=24% Similarity=0.467 Sum_probs=28.0
Q ss_pred ccccccCCCCCCcE--------------EcCCCccccHHHHHHHHHhCCCCCCCCCCCC
Q psy3978 85 IKCPICLDLPRAPQ--------------MTRCGHCFCWPCILHYLALSDKSWRKCPICY 129 (243)
Q Consensus 85 ~~CpICl~~~~~p~--------------~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr 129 (243)
..|--|+..|..+. -..|++.||.+|=.=+-+.- ..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~L----h~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESL----HCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhc----cCCcCCC
Confidence 45999998776431 24699999999954333322 6899985
No 174
>KOG3726|consensus
Probab=26.52 E-value=40 Score=33.40 Aligned_cols=39 Identities=23% Similarity=0.523 Sum_probs=27.1
Q ss_pred ccccccCCC----CCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 85 IKCPICLDL----PRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 85 ~~CpICl~~----~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
..|-+|..+ ..-+..+.|+-.||..|-..+ . ..||+|.-
T Consensus 655 r~C~vcq~pedse~~v~rt~~C~~~~C~~c~~~~---~----~~~~vC~~ 697 (717)
T KOG3726|consen 655 RTCKVCQLPEDSETDVCRTTFCYTPYCVACSLDY---A----SISEVCGP 697 (717)
T ss_pred HHHHHhcCCcCccccccCccccCCcchHhhhhhh---h----ccCcccCc
Confidence 358888863 223556789999999995443 3 47999953
No 175
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=26.39 E-value=42 Score=29.03 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=15.1
Q ss_pred ccccccCCCCC-CcEEc--CCCccc
Q psy3978 85 IKCPICLDLPR-APQMT--RCGHCF 106 (243)
Q Consensus 85 ~~CpICl~~~~-~p~~~--~CgH~F 106 (243)
+.||+|...+. ....+ +.||.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 67999999774 22334 457887
No 176
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.26 E-value=37 Score=26.35 Aligned_cols=53 Identities=17% Similarity=0.290 Sum_probs=29.9
Q ss_pred ccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHhhhccCccceeeeeeecCCCeeEe
Q psy3978 104 HCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKRARAVNEEVTFQLMKRERGSTVVS 169 (243)
Q Consensus 104 H~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~~~~~~~~~~l~l~~r~~~~~~~~ 169 (243)
..||..|-...+ ..||.|..++.-..... .....|...+.--+|..-|+..||
T Consensus 28 eafcskcgeati-------~qcp~csasirgd~~ve------gvlglg~dye~psfchncgs~fpw 80 (160)
T COG4306 28 EAFCSKCGEATI-------TQCPICSASIRGDYYVE------GVLGLGGDYEPPSFCHNCGSRFPW 80 (160)
T ss_pred HHHHhhhchHHH-------hcCCccCCcccccceee------eeeccCCCCCCcchhhcCCCCCCc
Confidence 368998876554 57999988876433211 122334444444455555544443
No 177
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=25.71 E-value=33 Score=18.78 Aligned_cols=8 Identities=50% Similarity=1.771 Sum_probs=4.1
Q ss_pred CCCCCccc
Q psy3978 125 CPICYEAV 132 (243)
Q Consensus 125 CP~Cr~~~ 132 (243)
||+|.+.+
T Consensus 4 CPiC~~~v 11 (26)
T smart00734 4 CPVCFREV 11 (26)
T ss_pred CCCCcCcc
Confidence 55555444
No 178
>KOG0314|consensus
Probab=25.30 E-value=18 Score=34.10 Aligned_cols=46 Identities=24% Similarity=0.501 Sum_probs=35.4
Q ss_pred cCCCCcccccc-CCCCCCcEEc--CCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 80 FGNEDIKCPIC-LDLPRAPQMT--RCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 80 ~~~~~~~CpIC-l~~~~~p~~~--~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
...+++.|++| .+.+.+..++ .|..+||..||.+.+... .|+.|.+
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~-----~~~~c~~ 263 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISK-----SMCVCGA 263 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCccccccccccc-----cCCcchh
Confidence 36788999999 6777777766 488999999999877764 5555544
No 179
>KOG1814|consensus
Probab=23.64 E-value=40 Score=31.35 Aligned_cols=33 Identities=30% Similarity=0.847 Sum_probs=24.3
Q ss_pred CCCCccccccCCCCCCc------EEcCCCccccHHHHHH
Q psy3978 81 GNEDIKCPICLDLPRAP------QMTRCGHCFCWPCILH 113 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p------~~~~CgH~FC~~Ci~~ 113 (243)
....-+||-|.-..... .-+.|||.||+-|-..
T Consensus 365 ~~N~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~ 403 (445)
T KOG1814|consen 365 ESNSKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAEL 403 (445)
T ss_pred HhcCCCCCcccceeecCCCccceeeccccccceeehhhh
Confidence 34567899999876532 2378999999999754
No 180
>PRK11595 DNA utilization protein GntX; Provisional
Probab=23.36 E-value=60 Score=27.41 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=20.3
Q ss_pred cccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 86 KCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 86 ~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
.|.+|...+... ....|..|...+-... ..||.|..++
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~~----~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTLK----TCCPQCGLPA 44 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCccc----CcCccCCCcC
Confidence 488887654321 1236777766542211 3577776553
No 181
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=23.16 E-value=68 Score=27.72 Aligned_cols=23 Identities=30% Similarity=0.826 Sum_probs=16.8
Q ss_pred cccccCCCCCCcEEcCCCccccHHHHHHHHH
Q psy3978 86 KCPICLDLPRAPQMTRCGHCFCWPCILHYLA 116 (243)
Q Consensus 86 ~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~ 116 (243)
.|+||. ....+.+|..|+..-+.
T Consensus 1 ~C~iC~--------~~~~~~~C~~C~~~~L~ 23 (302)
T PF10186_consen 1 QCPICH--------NSRRRFYCANCVNNRLL 23 (302)
T ss_pred CCCCCC--------CCCCCeECHHHHHHHHH
Confidence 499998 44566789999976543
No 182
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=22.78 E-value=61 Score=20.08 Aligned_cols=22 Identities=23% Similarity=0.547 Sum_probs=13.1
Q ss_pred ccccCCCCCCcEEcCCCccccH
Q psy3978 87 CPICLDLPRAPQMTRCGHCFCW 108 (243)
Q Consensus 87 CpICl~~~~~p~~~~CgH~FC~ 108 (243)
|..|...-..-+-+.|+|++|.
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~ 23 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCG 23 (50)
T ss_pred cccCCCcCCeEEecCCCCcccC
Confidence 6666654332234678888884
No 183
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=22.78 E-value=37 Score=32.43 Aligned_cols=10 Identities=40% Similarity=0.663 Sum_probs=5.2
Q ss_pred ccccccCCCC
Q psy3978 85 IKCPICLDLP 94 (243)
Q Consensus 85 ~~CpICl~~~ 94 (243)
.-||-|++.+
T Consensus 27 ~yCp~CL~~~ 36 (483)
T PF05502_consen 27 YYCPNCLFEV 36 (483)
T ss_pred eECccccccC
Confidence 4456665543
No 184
>PF12773 DZR: Double zinc ribbon
Probab=22.23 E-value=71 Score=19.84 Aligned_cols=11 Identities=27% Similarity=0.640 Sum_probs=7.7
Q ss_pred CCCCCCCcccc
Q psy3978 123 RKCPICYEAVH 133 (243)
Q Consensus 123 ~~CP~Cr~~~~ 133 (243)
..||.|...+.
T Consensus 30 ~~C~~Cg~~~~ 40 (50)
T PF12773_consen 30 KICPNCGAENP 40 (50)
T ss_pred CCCcCCcCCCc
Confidence 57888877654
No 185
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=22.21 E-value=4.5 Score=23.27 Aligned_cols=8 Identities=50% Similarity=1.356 Sum_probs=3.8
Q ss_pred CCCCCCCc
Q psy3978 123 RKCPICYE 130 (243)
Q Consensus 123 ~~CP~Cr~ 130 (243)
..||.|..
T Consensus 22 r~C~~Cg~ 29 (32)
T PF09297_consen 22 RRCPSCGH 29 (32)
T ss_dssp EEESSSS-
T ss_pred eECCCCcC
Confidence 45555543
No 186
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.02 E-value=45 Score=19.78 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=7.3
Q ss_pred ccccccCCCCCC
Q psy3978 85 IKCPICLDLPRA 96 (243)
Q Consensus 85 ~~CpICl~~~~~ 96 (243)
.+||-|...+..
T Consensus 3 i~CP~C~~~f~v 14 (37)
T PF13719_consen 3 ITCPNCQTRFRV 14 (37)
T ss_pred EECCCCCceEEc
Confidence 357777765543
No 187
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=21.77 E-value=67 Score=19.37 Aligned_cols=22 Identities=32% Similarity=0.697 Sum_probs=12.9
Q ss_pred ccccCCCCCC-cEEcC-CCccccH
Q psy3978 87 CPICLDLPRA-PQMTR-CGHCFCW 108 (243)
Q Consensus 87 CpICl~~~~~-p~~~~-CgH~FC~ 108 (243)
|.+|.....- |..=. |+..||.
T Consensus 1 C~~C~~~~~l~~f~C~~C~~~FC~ 24 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCGNLFCG 24 (39)
T ss_pred CcccCCcccccCeECCccCCcccc
Confidence 4556654333 65544 8888885
No 188
>KOG3799|consensus
Probab=21.76 E-value=17 Score=28.54 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=19.8
Q ss_pred cCCCCccccccCCC-CCCcEEcCCCccccHHHHH
Q psy3978 80 FGNEDIKCPICLDL-PRAPQMTRCGHCFCWPCIL 112 (243)
Q Consensus 80 ~~~~~~~CpICl~~-~~~p~~~~CgH~FC~~Ci~ 112 (243)
...++.+|-||+.. |.+ .|||. |..|-.
T Consensus 61 Gv~ddatC~IC~KTKFAD----G~GH~-C~YCq~ 89 (169)
T KOG3799|consen 61 GVGDDATCGICHKTKFAD----GCGHN-CSYCQT 89 (169)
T ss_pred ccCcCcchhhhhhccccc----ccCcc-cchhhh
Confidence 35788999999984 433 58884 666644
No 189
>PLN02189 cellulose synthase
Probab=21.69 E-value=79 Score=33.04 Aligned_cols=48 Identities=27% Similarity=0.587 Sum_probs=31.8
Q ss_pred CCccccccCCCCC-----CcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 83 EDIKCPICLDLPR-----APQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 83 ~~~~CpICl~~~~-----~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
....|.||.+... ++.+ -.||---|..|.+ +-... +...||.|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~e--g~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERRE--GTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhc--CCccCcccCCchh
Confidence 4457999999643 2222 2477788999984 32222 2379999998765
No 190
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=21.32 E-value=33 Score=25.84 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=16.2
Q ss_pred cHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 107 CWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 107 C~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
|..|=.+|+-.+..+ ..||.|...+...
T Consensus 12 Cp~CG~kFYDLnk~P-ivCP~CG~~~~~~ 39 (108)
T PF09538_consen 12 CPSCGAKFYDLNKDP-IVCPKCGTEFPPE 39 (108)
T ss_pred CCCCcchhccCCCCC-ccCCCCCCccCcc
Confidence 334444454444322 6799998877654
No 191
>PRK04023 DNA polymerase II large subunit; Validated
Probab=21.09 E-value=81 Score=32.93 Aligned_cols=47 Identities=21% Similarity=0.309 Sum_probs=31.9
Q ss_pred CCCccccccCCCCCCcEEcCCCc-----cccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGH-----CFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH-----~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.....||-|........--.||. .||..|-. ... ...||.|......
T Consensus 624 Vg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~--~~~----~y~CPKCG~El~~ 675 (1121)
T PRK04023 624 IGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGI--EVE----EDECEKCGREPTP 675 (1121)
T ss_pred ccCccCCCCCCcCCcccCCCCCCCCCcceeCccccC--cCC----CCcCCCCCCCCCc
Confidence 45678999998764444446984 59999922 111 1579999987764
No 192
>KOG0269|consensus
Probab=20.94 E-value=1e+02 Score=31.03 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=27.7
Q ss_pred ccccccCCCCCCcEE--cCCCccccHHHHHHHHHhCCCCCCCCCC
Q psy3978 85 IKCPICLDLPRAPQM--TRCGHCFCWPCILHYLALSDKSWRKCPI 127 (243)
Q Consensus 85 ~~CpICl~~~~~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~ 127 (243)
..|.+|-..+..-.. -.|||.-+.+|+..|+... ..||.
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~----s~ca~ 820 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKA----SPCAK 820 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhcC----CCCcc
Confidence 357777765543222 2599999999999999876 45665
No 193
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=20.48 E-value=45 Score=33.46 Aligned_cols=53 Identities=26% Similarity=0.538 Sum_probs=36.3
Q ss_pred CCCCccccccCCCCCCcE--------E--cCCCccc--------------------cHHHHHHHHHhCCC----CCCCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQ--------M--TRCGHCF--------------------CWPCILHYLALSDK----SWRKCP 126 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~--------~--~~CgH~F--------------------C~~Ci~~~~~~~~~----~~~~CP 126 (243)
..+--.|+-|+..+.+|. + |.||..| |..|..++..-..+ ....||
T Consensus 65 ppD~a~C~~Cl~E~~dp~~Rry~YpF~nCt~CGPr~~i~~~lpydr~~t~m~~f~~C~~C~~ey~~p~~rr~h~~~~~C~ 144 (711)
T TIGR00143 65 PADVATCSDCLEEMLDKNDRRYLYPFISCTHCGPRFTIIEALPYDRENTSMADFPLCPDCAKEYKDPLDRRFHAQPIACP 144 (711)
T ss_pred CCchhhHHHHHHHhcCCCcccccCCcccccCCCCCeEEeecCCCCCCCcCCCCCcCCHHHHHHhcCCccccCCCCCccCC
Confidence 345567888988776652 2 5688777 99999998653322 125899
Q ss_pred CCCcccc
Q psy3978 127 ICYEAVH 133 (243)
Q Consensus 127 ~Cr~~~~ 133 (243)
.|.-.+.
T Consensus 145 ~Cgp~l~ 151 (711)
T TIGR00143 145 RCGPQLN 151 (711)
T ss_pred CCCcEEE
Confidence 9976664
No 194
>PF02148 zf-UBP: Zn-finger in ubiquitin-hydrolases and other protein; InterPro: IPR001607 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents UBP-type zinc finger domains, which display some similarity with the Zn-binding domain of the insulinase family. The UBP-type zinc finger domain is found only in a small subfamily of ubiquitin C-terminal hydrolases (deubiquitinases or UBP) [, ], All members of this subfamily are isopeptidase-T, which are known to cleave isopeptide bonds between ubiquitin moieties. Some of the proteins containing an UBP zinc finger include: Homo sapiens (Human) deubiquitinating enzyme 13 (UBPD) Human deubiquitinating enzyme 5 (UBP5) Dictyostelium discoideum (Slime mold) deubiquitinating enzyme A (UBPA) Saccharomyces cerevisiae (Baker's yeast) deubiquitinating enzyme 8 (UBP8) Yeast deubiquitinating enzyme 14 (UBP14) More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3GV4_A 3PHD_B 3C5K_A 2UZG_A 3IHP_B 2G43_B 2G45_D 2I50_A 3MHH_A 3MHS_A ....
Probab=20.07 E-value=78 Score=20.94 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=16.9
Q ss_pred ccccCCCCCCc-EEcCCCccccHH----HHHHHHHh
Q psy3978 87 CPICLDLPRAP-QMTRCGHCFCWP----CILHYLAL 117 (243)
Q Consensus 87 CpICl~~~~~p-~~~~CgH~FC~~----Ci~~~~~~ 117 (243)
|..|....... +-|.||+.+|.. ....+.+.
T Consensus 1 C~~C~~~~~~lw~CL~Cg~~~C~~~~~~Ha~~H~~~ 36 (63)
T PF02148_consen 1 CSVCGSTNSNLWLCLTCGYVGCGRYSNGHALKHYKE 36 (63)
T ss_dssp -SSSHTCSSSEEEETTTS-EEETTTSTSHHHHHHHH
T ss_pred CCCCCCcCCceEEeCCCCcccccCCcCcHHHHhhcc
Confidence 55666541222 227899999985 55555543
No 195
>PLN02436 cellulose synthase A
Probab=20.00 E-value=81 Score=33.09 Aligned_cols=48 Identities=27% Similarity=0.613 Sum_probs=31.8
Q ss_pred CCccccccCCCCC-----CcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 83 EDIKCPICLDLPR-----APQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 83 ~~~~CpICl~~~~-----~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
....|.||.+... ++.+ -.||--.|..|.+ +-... +...||.|+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~e--g~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERRE--GNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhhc--CCccCcccCCchh
Confidence 4457999999642 2222 2478789999984 32222 2379999988765
Done!