Query psy3978
Match_columns 243
No_of_seqs 302 out of 1832
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 22:09:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3978.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3978hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.6 3.4E-15 1.2E-19 105.2 5.5 62 81-145 5-66 (78)
2 2kr4_A Ubiquitin conjugation f 99.5 1.1E-14 3.6E-19 104.9 5.6 62 81-146 11-72 (85)
3 3ztg_A E3 ubiquitin-protein li 99.5 2.1E-14 7.3E-19 104.3 6.1 64 81-146 10-75 (92)
4 3lrq_A E3 ubiquitin-protein li 99.5 5.5E-15 1.9E-19 109.4 2.9 62 81-145 19-81 (100)
5 2kre_A Ubiquitin conjugation f 99.5 1.8E-14 6E-19 106.8 5.1 62 81-146 26-87 (100)
6 2djb_A Polycomb group ring fin 99.5 3.9E-14 1.3E-18 98.4 5.9 56 81-140 12-68 (72)
7 1wgm_A Ubiquitin conjugation f 99.5 3E-14 1E-18 105.2 5.6 62 81-146 19-81 (98)
8 3fl2_A E3 ubiquitin-protein li 99.5 3.1E-14 1.1E-18 109.2 5.4 63 81-146 49-112 (124)
9 2y43_A E3 ubiquitin-protein li 99.5 1.6E-14 5.3E-19 106.5 2.9 62 81-146 19-81 (99)
10 2ecw_A Tripartite motif-contai 99.5 6E-14 2E-18 99.9 5.1 62 81-142 16-79 (85)
11 2ecy_A TNF receptor-associated 99.4 4.1E-14 1.4E-18 96.5 4.0 54 81-137 12-65 (66)
12 2ysl_A Tripartite motif-contai 99.4 6.8E-14 2.3E-18 97.1 5.2 56 81-137 17-72 (73)
13 2csy_A Zinc finger protein 183 99.4 1.4E-13 4.8E-18 97.7 6.9 58 81-143 12-69 (81)
14 3ng2_A RNF4, snurf, ring finge 99.4 4E-14 1.4E-18 97.7 3.3 56 81-140 7-69 (71)
15 2yur_A Retinoblastoma-binding 99.4 9.8E-14 3.3E-18 97.0 5.1 52 81-134 12-64 (74)
16 1g25_A CDK-activating kinase a 99.4 5.8E-14 2E-18 95.5 3.5 56 83-141 2-62 (65)
17 1jm7_A BRCA1, breast cancer ty 99.4 3.6E-14 1.2E-18 106.6 2.5 73 69-142 6-78 (112)
18 1jm7_B BARD1, BRCA1-associated 99.4 2.1E-14 7.2E-19 109.2 1.2 77 64-146 2-79 (117)
19 2egp_A Tripartite motif-contai 99.4 1.2E-14 4E-19 102.5 -0.6 62 81-142 9-73 (79)
20 2ecv_A Tripartite motif-contai 99.4 7.9E-14 2.7E-18 99.2 3.6 62 81-142 16-79 (85)
21 1z6u_A NP95-like ring finger p 99.4 1.5E-13 5.2E-18 109.0 5.6 62 82-146 76-138 (150)
22 4ayc_A E3 ubiquitin-protein li 99.4 7.8E-14 2.7E-18 109.0 3.0 50 82-135 51-100 (138)
23 2yu4_A E3 SUMO-protein ligase 99.4 2E-13 6.9E-18 99.9 4.9 66 81-146 4-75 (94)
24 3hct_A TNF receptor-associated 99.4 4E-13 1.4E-17 102.2 6.6 62 81-145 15-76 (118)
25 2xeu_A Ring finger protein 4; 99.4 8.2E-14 2.8E-18 94.0 2.3 54 83-140 2-62 (64)
26 2ckl_A Polycomb group ring fin 99.4 2E-13 6.9E-18 102.2 4.4 61 81-145 12-77 (108)
27 2d8t_A Dactylidin, ring finger 99.4 7.2E-14 2.5E-18 96.8 1.4 51 81-135 12-62 (71)
28 2ysj_A Tripartite motif-contai 99.4 5.2E-13 1.8E-17 90.1 5.4 47 81-128 17-63 (63)
29 2ct2_A Tripartite motif protei 99.4 5.9E-13 2E-17 95.5 5.9 56 81-137 12-71 (88)
30 2c2l_A CHIP, carboxy terminus 99.4 3.4E-13 1.2E-17 116.2 5.0 63 81-146 205-267 (281)
31 2f42_A STIP1 homology and U-bo 99.4 5.4E-13 1.8E-17 108.5 5.4 63 81-146 103-165 (179)
32 2ea6_A Ring finger protein 4; 99.4 3.2E-13 1.1E-17 92.4 3.5 50 81-134 12-68 (69)
33 2ect_A Ring finger protein 126 99.3 7.4E-13 2.5E-17 93.1 3.9 56 81-140 12-70 (78)
34 2ecm_A Ring finger and CHY zin 99.3 1.8E-12 6.2E-17 84.8 4.6 48 82-133 3-54 (55)
35 1rmd_A RAG1; V(D)J recombinati 99.3 1E-12 3.5E-17 99.5 3.7 55 82-139 21-75 (116)
36 1chc_A Equine herpes virus-1 r 99.3 2.2E-12 7.6E-17 88.2 4.8 48 82-133 3-51 (68)
37 3l11_A E3 ubiquitin-protein li 99.3 3.3E-13 1.1E-17 102.0 0.5 51 81-134 12-62 (115)
38 2ckl_B Ubiquitin ligase protei 99.3 6.5E-13 2.2E-17 106.7 2.3 63 81-146 51-115 (165)
39 2ecj_A Tripartite motif-contai 99.3 1.7E-12 6E-17 85.8 3.5 47 81-128 12-58 (58)
40 2kiz_A E3 ubiquitin-protein li 99.3 4.7E-12 1.6E-16 86.9 5.6 51 81-135 11-64 (69)
41 1iym_A EL5; ring-H2 finger, ub 99.3 2E-12 6.8E-17 84.7 3.4 49 81-133 2-54 (55)
42 1e4u_A Transcriptional repress 99.3 2.9E-12 9.8E-17 90.6 4.1 54 81-137 8-65 (78)
43 2l0b_A E3 ubiquitin-protein li 99.3 3E-12 1E-16 92.9 4.0 49 82-134 38-89 (91)
44 1x4j_A Ring finger protein 38; 99.2 2.8E-12 9.5E-17 89.6 3.5 50 81-134 20-72 (75)
45 3hcs_A TNF receptor-associated 99.2 6E-12 2.1E-16 101.5 5.1 62 81-145 15-76 (170)
46 2ep4_A Ring finger protein 24; 99.2 6.6E-12 2.3E-16 87.3 4.3 50 81-134 12-64 (74)
47 4ap4_A E3 ubiquitin ligase RNF 99.2 2.5E-12 8.4E-17 98.8 2.3 56 81-140 4-66 (133)
48 2ecn_A Ring finger protein 141 99.2 1.4E-12 4.8E-17 89.8 0.8 51 81-136 12-62 (70)
49 3knv_A TNF receptor-associated 99.2 2E-12 6.8E-17 101.5 1.4 51 81-134 28-78 (141)
50 1v87_A Deltex protein 2; ring- 99.2 1.2E-11 4.1E-16 93.1 4.9 54 82-135 23-95 (114)
51 1bor_A Transcription factor PM 99.2 3.3E-12 1.1E-16 84.4 0.8 47 82-135 4-50 (56)
52 3htk_C E3 SUMO-protein ligase 99.2 9.2E-12 3.1E-16 106.2 2.7 64 81-146 178-244 (267)
53 4ap4_A E3 ubiquitin ligase RNF 99.1 2.1E-11 7.1E-16 93.6 1.9 56 81-140 69-131 (133)
54 2ecl_A Ring-box protein 2; RNF 99.1 3.1E-11 1E-15 85.7 2.6 49 83-135 14-77 (81)
55 2vje_A E3 ubiquitin-protein li 99.1 1E-10 3.5E-15 79.3 3.9 49 81-133 5-56 (64)
56 4ic3_A E3 ubiquitin-protein li 99.0 4.1E-11 1.4E-15 83.6 1.7 46 81-134 21-67 (74)
57 2bay_A PRE-mRNA splicing facto 99.0 1.3E-10 4.5E-15 78.1 3.7 54 84-141 3-57 (61)
58 2y1n_A E3 ubiquitin-protein li 99.0 2.9E-10 1E-14 102.4 6.4 51 82-135 330-380 (389)
59 2ecg_A Baculoviral IAP repeat- 99.0 1.4E-10 4.9E-15 81.0 2.9 45 82-134 23-68 (75)
60 2vje_B MDM4 protein; proto-onc 99.0 2.5E-10 8.6E-15 77.1 3.3 47 83-133 6-55 (63)
61 3dpl_R Ring-box protein 1; ubi 99.0 5E-10 1.7E-14 83.6 4.9 47 83-133 36-100 (106)
62 1wim_A KIAA0161 protein; ring 98.8 6.4E-10 2.2E-14 80.9 1.0 55 82-136 3-68 (94)
63 2yho_A E3 ubiquitin-protein li 98.8 9.4E-10 3.2E-14 77.7 1.7 45 82-134 16-61 (79)
64 2ea5_A Cell growth regulator w 98.8 4.4E-09 1.5E-13 72.1 4.5 46 81-134 12-58 (68)
65 2d8s_A Cellular modulator of i 98.7 1.3E-08 4.6E-13 71.9 4.9 52 81-134 12-70 (80)
66 4a0k_B E3 ubiquitin-protein li 98.7 2.1E-09 7E-14 81.5 0.5 47 83-133 47-111 (117)
67 3t6p_A Baculoviral IAP repeat- 98.6 5.2E-09 1.8E-13 93.4 0.8 46 81-134 292-338 (345)
68 3vk6_A E3 ubiquitin-protein li 98.3 5E-07 1.7E-11 65.7 4.1 45 86-133 3-48 (101)
69 2ct0_A Non-SMC element 1 homol 98.3 8.5E-07 2.9E-11 61.6 5.1 50 82-133 13-63 (74)
70 1vyx_A ORF K3, K3RING; zinc-bi 98.1 2E-06 6.9E-11 57.2 3.9 52 81-134 3-59 (60)
71 3k1l_B Fancl; UBC, ring, RWD, 97.7 7.2E-06 2.5E-10 72.4 1.4 52 83-134 307-373 (381)
72 2jun_A Midline-1; B-BOX, TRIM, 97.5 8.2E-05 2.8E-09 54.1 3.6 87 83-180 2-94 (101)
73 3m62_A Ubiquitin conjugation f 96.7 0.002 6.7E-08 63.9 5.9 64 79-146 886-950 (968)
74 3nw0_A Non-structural maintena 96.3 0.0037 1.2E-07 52.7 4.6 50 83-134 179-229 (238)
75 2cs3_A Protein C14ORF4, MY039 92.9 0.065 2.2E-06 37.0 2.7 37 82-118 13-53 (93)
76 3i2d_A E3 SUMO-protein ligase 91.7 0.38 1.3E-05 42.8 6.8 61 84-146 249-312 (371)
77 4fo9_A E3 SUMO-protein ligase 91.2 0.4 1.4E-05 42.5 6.5 61 84-146 215-278 (360)
78 2ko5_A Ring finger protein Z; 86.7 0.34 1.1E-05 34.5 2.2 49 81-135 25-74 (99)
79 1wil_A KIAA1045 protein; ring 77.0 2.3 7.9E-05 29.6 3.4 48 81-129 12-74 (89)
80 2lri_C Autoimmune regulator; Z 74.9 2.5 8.5E-05 27.9 3.1 48 83-132 11-60 (66)
81 3mjh_B Early endosome antigen 69.9 0.71 2.4E-05 26.5 -0.5 15 83-97 4-18 (34)
82 2k16_A Transcription initiatio 65.8 1.5 5E-05 29.5 0.3 53 82-134 16-71 (75)
83 1x4u_A Zinc finger, FYVE domai 63.9 2.2 7.5E-05 29.4 1.0 30 82-111 12-45 (84)
84 3mpx_A FYVE, rhogef and PH dom 63.4 1.5 5.1E-05 39.2 0.0 50 83-132 374-430 (434)
85 2yw8_A RUN and FYVE domain-con 62.9 2.1 7.3E-05 29.3 0.8 32 81-112 16-51 (82)
86 1z2q_A LM5-1; membrane protein 62.7 2.4 8.2E-05 29.2 1.0 31 82-112 19-53 (84)
87 1f62_A Transcription factor WS 61.8 3 0.0001 25.6 1.3 45 86-130 2-49 (51)
88 1joc_A EEA1, early endosomal a 61.3 1.9 6.5E-05 32.2 0.3 29 84-112 69-101 (125)
89 2d8v_A Zinc finger FYVE domain 58.5 5.5 0.00019 26.3 2.1 34 81-115 5-39 (67)
90 2l5u_A Chromodomain-helicase-D 58.3 4.2 0.00014 26.2 1.5 48 81-130 8-57 (61)
91 1wfk_A Zinc finger, FYVE domai 56.3 3 0.0001 29.1 0.6 31 82-112 7-41 (88)
92 1weo_A Cellulose synthase, cat 55.9 25 0.00085 24.6 5.2 48 83-133 15-69 (93)
93 3t7l_A Zinc finger FYVE domain 55.7 2.7 9.3E-05 29.4 0.3 30 83-112 19-52 (90)
94 1vfy_A Phosphatidylinositol-3- 54.6 4.2 0.00014 27.2 1.0 27 85-111 12-42 (73)
95 1y02_A CARP2, FYVE-ring finger 54.2 2.8 9.7E-05 31.1 0.1 45 82-130 17-65 (120)
96 2o35_A Hypothetical protein DU 54.0 5.7 0.00019 28.4 1.7 14 105-118 42-55 (105)
97 3fyb_A Protein of unknown func 53.7 5.8 0.0002 28.3 1.7 13 105-117 41-53 (104)
98 2lbm_A Transcriptional regulat 52.6 12 0.00042 28.4 3.6 48 83-130 62-116 (142)
99 3zyq_A Hepatocyte growth facto 52.2 3.3 0.00011 34.0 0.3 30 83-112 163-196 (226)
100 3o36_A Transcription intermedi 51.8 2.7 9.1E-05 33.3 -0.4 50 83-132 3-52 (184)
101 1z60_A TFIIH basal transcripti 50.9 6.4 0.00022 25.4 1.4 40 85-128 16-58 (59)
102 1dvp_A HRS, hepatocyte growth 50.2 4.3 0.00015 33.1 0.6 30 83-112 160-193 (220)
103 1m3v_A FLIN4, fusion of the LI 50.2 8.5 0.00029 28.0 2.2 50 83-136 31-83 (122)
104 2pv0_B DNA (cytosine-5)-methyl 47.3 13 0.00043 33.2 3.2 48 83-131 92-148 (386)
105 2fiy_A Protein FDHE homolog; F 46.4 1.3 4.4E-05 38.5 -3.3 46 82-131 180-231 (309)
106 2rgt_A Fusion of LIM/homeobox 46.0 21 0.00071 27.4 4.1 48 82-135 31-78 (169)
107 2xqn_T Testin, TESS; metal-bin 45.1 13 0.00044 26.9 2.6 47 82-134 28-75 (126)
108 3ql9_A Transcriptional regulat 44.7 21 0.00073 26.7 3.7 47 84-130 57-110 (129)
109 1wd2_A Ariadne-1 protein homol 44.5 1.5 5E-05 28.5 -2.5 34 84-117 6-47 (60)
110 1mm2_A MI2-beta; PHD, zinc fin 44.1 3.8 0.00013 26.4 -0.5 48 82-131 7-56 (61)
111 1wen_A Inhibitor of growth fam 41.1 16 0.00055 24.2 2.3 47 82-132 14-66 (71)
112 2ct7_A Ring finger protein 31; 40.4 7.8 0.00027 26.6 0.6 29 86-114 27-61 (86)
113 2jmo_A Parkin; IBR, E3 ligase, 40.1 1.7 5.7E-05 29.8 -2.9 14 101-114 55-68 (80)
114 2dar_A PDZ and LIM domain prot 39.4 14 0.00047 25.2 1.8 39 84-134 25-63 (90)
115 2jtn_A LIM domain-binding prot 39.3 19 0.00066 28.0 2.9 48 82-135 85-132 (182)
116 3u5n_A E3 ubiquitin-protein li 38.3 3.3 0.00011 33.4 -1.9 48 83-132 6-55 (207)
117 1weu_A Inhibitor of growth fam 38.3 16 0.00055 25.6 2.0 47 82-132 34-86 (91)
118 1nyp_A Pinch protein; LIM doma 38.2 15 0.00052 23.2 1.8 38 85-134 6-43 (66)
119 1x62_A C-terminal LIM domain p 38.0 18 0.0006 23.9 2.2 39 83-133 14-52 (79)
120 2d8z_A Four and A half LIM dom 38.0 20 0.00069 22.8 2.4 36 86-133 7-42 (70)
121 2d8x_A Protein pinch; LIM doma 36.7 18 0.00063 23.1 2.0 25 86-110 7-31 (70)
122 1fp0_A KAP-1 corepressor; PHD 36.7 9.6 0.00033 26.6 0.6 49 81-131 22-72 (88)
123 1wyh_A SLIM 2, skeletal muscle 36.3 20 0.00068 23.0 2.2 37 86-134 7-45 (72)
124 2xjy_A Rhombotin-2; oncoprotei 35.4 24 0.00081 25.6 2.7 49 82-134 27-78 (131)
125 2lv9_A Histone-lysine N-methyl 35.4 6.9 0.00023 27.7 -0.3 46 83-130 27-75 (98)
126 2ro1_A Transcription intermedi 35.1 6.7 0.00023 31.2 -0.5 48 85-132 3-50 (189)
127 2jne_A Hypothetical protein YF 34.9 0.87 3E-05 32.5 -5.0 40 85-133 33-72 (101)
128 1x64_A Alpha-actinin-2 associa 34.4 29 0.00099 23.4 2.9 41 83-135 24-64 (89)
129 1xwh_A Autoimmune regulator; P 32.5 3.5 0.00012 27.0 -2.1 48 82-131 6-55 (66)
130 1v6g_A Actin binding LIM prote 32.1 19 0.00064 23.8 1.5 38 86-135 17-54 (81)
131 1wig_A KIAA1808 protein; LIM d 31.9 22 0.00075 23.1 1.8 36 86-133 7-42 (73)
132 2cu8_A Cysteine-rich protein 2 31.9 22 0.00074 23.2 1.8 39 84-134 9-48 (76)
133 2gmg_A Hypothetical protein PF 31.8 19 0.00065 25.9 1.5 29 95-132 66-94 (105)
134 2ffw_A Midline-1; B-BOX, ring 31.6 33 0.0011 22.9 2.7 31 83-113 29-62 (78)
135 1x4l_A Skeletal muscle LIM-pro 31.5 35 0.0012 21.8 2.8 37 85-133 6-46 (72)
136 1zbd_B Rabphilin-3A; G protein 30.7 12 0.00041 28.2 0.3 31 82-112 53-88 (134)
137 4g9i_A Hydrogenase maturation 30.5 16 0.00053 35.6 1.2 53 81-133 103-189 (772)
138 2yql_A PHD finger protein 21A; 30.1 2.2 7.6E-05 26.9 -3.4 47 81-129 6-54 (56)
139 1x68_A FHL5 protein; four-and- 29.6 27 0.00092 22.7 1.9 37 85-133 6-46 (76)
140 2cor_A Pinch protein; LIM doma 29.5 22 0.00076 23.5 1.5 39 84-134 15-53 (79)
141 2did_A Tripartite motif protei 29.3 28 0.00095 21.1 1.9 29 152-180 14-42 (53)
142 1x6a_A LIMK-2, LIM domain kina 28.5 21 0.0007 23.6 1.2 25 86-110 17-41 (81)
143 1x63_A Skeletal muscle LIM-pro 28.4 34 0.0012 22.4 2.4 38 85-134 16-55 (82)
144 2cup_A Skeletal muscle LIM-pro 27.8 19 0.00065 24.8 1.0 47 82-134 31-78 (101)
145 2cur_A Skeletal muscle LIM-pro 27.6 28 0.00094 22.1 1.7 29 85-113 32-61 (69)
146 1fre_A Nuclear factor XNF7; zi 27.4 33 0.0011 19.5 1.9 28 153-180 10-37 (42)
147 2puy_A PHD finger protein 21A; 27.0 4.9 0.00017 25.7 -2.2 46 83-130 4-51 (60)
148 1x4k_A Skeletal muscle LIM-pro 26.9 33 0.0011 21.9 2.0 36 86-133 7-44 (72)
149 3ttc_A HYPF, transcriptional r 26.9 19 0.00065 34.4 1.0 52 81-132 14-99 (657)
150 2zet_C Melanophilin; complex, 26.5 21 0.0007 27.5 1.0 45 83-130 67-116 (153)
151 2dlo_A Thyroid receptor-intera 26.0 22 0.00075 23.5 1.0 25 86-110 17-41 (81)
152 1rut_X Flinc4, fusion protein 25.9 17 0.00058 28.5 0.5 49 82-134 30-81 (188)
153 2cuq_A Four and A half LIM dom 25.9 33 0.0011 22.4 1.9 36 86-133 17-52 (80)
154 2eps_A POZ-, at HOOK-, and zin 24.9 1E+02 0.0035 17.8 4.0 42 82-134 10-53 (54)
155 2yrg_A Tripartite motif-contai 24.7 35 0.0012 21.4 1.7 29 152-180 20-48 (59)
156 3v43_A Histone acetyltransfera 24.2 1.2E+02 0.004 21.5 4.8 47 83-129 4-62 (112)
157 1x3h_A Leupaxin; paxillin fami 24.2 30 0.001 22.6 1.4 25 86-110 17-41 (80)
158 2ysm_A Myeloid/lymphoid or mix 23.8 17 0.00057 26.0 0.0 49 81-129 4-55 (111)
159 2l43_A N-teminal domain from h 23.4 18 0.00061 25.0 0.1 54 81-136 22-80 (88)
160 2egq_A FHL1 protein; LIM domai 23.1 43 0.0015 21.6 2.0 38 85-134 16-58 (77)
161 3c5k_A HD6, histone deacetylas 23.0 35 0.0012 24.6 1.7 25 84-108 24-48 (109)
162 1iml_A CRIP, cysteine rich int 22.8 33 0.0011 22.2 1.4 44 82-131 25-70 (76)
163 2e6s_A E3 ubiquitin-protein li 22.4 9.9 0.00034 25.7 -1.4 45 86-130 28-76 (77)
164 3vth_A Hydrogenase maturation 22.3 22 0.00076 34.5 0.6 53 81-133 108-194 (761)
165 1wep_A PHF8; structural genomi 22.0 1E+02 0.0035 20.4 3.8 51 82-133 10-65 (79)
166 1g47_A Pinch protein; LIM doma 22.0 44 0.0015 21.5 1.9 39 84-134 11-51 (77)
167 3a1b_A DNA (cytosine-5)-methyl 21.9 37 0.0013 26.3 1.6 45 84-130 79-133 (159)
168 2yt5_A Metal-response element- 21.3 6.1 0.00021 25.5 -2.6 50 82-131 4-61 (66)
169 3shb_A E3 ubiquitin-protein li 21.2 9.8 0.00034 25.8 -1.6 45 86-130 28-76 (77)
170 3asl_A E3 ubiquitin-protein li 21.0 12 0.00042 24.7 -1.1 45 86-130 20-68 (70)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.56 E-value=3.4e-15 Score=105.23 Aligned_cols=62 Identities=23% Similarity=0.422 Sum_probs=54.6
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHH
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIK 145 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~ 145 (243)
..+++.||||++.+.+|++++|||+||..||.+|+..+. ..||+|+..+...++.++..+..
T Consensus 5 ~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~---~~CP~C~~~~~~~~l~~n~~l~~ 66 (78)
T 1t1h_A 5 FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGH---KTCPKSQETLLHAGLTPNYVLKS 66 (78)
T ss_dssp CSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTC---CBCTTTCCBCSSCCCEECTTTHH
T ss_pred CcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCc---CCCCCCcCCCChhhCccCHHHHH
Confidence 567899999999999999999999999999999997633 78999999998888887776644
No 2
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.52 E-value=1.1e-14 Score=104.86 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=56.3
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~ 146 (243)
..+++.||||+++|.+|++++|||+||..||.+|+... ..||+|+..+...++.++..+...
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~----~~cP~~~~~l~~~~l~pn~~L~~~ 72 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS----PTDPFNRQMLTESMLEPVPELKEQ 72 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCGGGCEECHHHHHH
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhcC----CCCCCCcCCCChHhcchHHHHHHH
Confidence 56889999999999999999999999999999999864 799999999998899988887543
No 3
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=104.28 Aligned_cols=64 Identities=25% Similarity=0.524 Sum_probs=54.3
Q ss_pred CCCCccccccCCCCCCcEEcC-CCccccHHHHHHHHHhCCCCCCCCCCCCccc-cCCCCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQMTR-CGHCFCWPCILHYLALSDKSWRKCPICYEAV-HLGDLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~-CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~-~~~~l~~~~~~~~~ 146 (243)
..+++.||||++.+.+|++++ |||+||..||..|+..... ..||+||..+ ....+.++..+...
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~--~~CP~Cr~~~~~~~~~~~n~~l~~~ 75 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDE--HTCPTCHQNDVSPDALIANKFLRQA 75 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTT--CCCTTTCCSSCCTTSCEECHHHHHH
T ss_pred CCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCC--CcCcCCCCcCCCccccCcCHHHHHH
Confidence 567899999999999999999 9999999999999986532 6899999997 56678887776543
No 4
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.50 E-value=5.5e-15 Score=109.42 Aligned_cols=62 Identities=26% Similarity=0.634 Sum_probs=54.5
Q ss_pred CCCCccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHH
Q psy3978 81 GNEDIKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIK 145 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~ 145 (243)
..+++.|+||++.+.+|+. ++|||+||..||.+|+.... ..||+||..+...++..+..+..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~~~~l~~~~~~~~ 81 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR---AQCPHCRAPLQLRELVNCRWAEE 81 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC---SBCTTTCCBCCGGGCEECTTHHH
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc---CCCCCCCCcCCHHHhHhhHHHHH
Confidence 4678899999999999999 99999999999999999874 68999999998888777665543
No 5
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.49 E-value=1.8e-14 Score=106.85 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=56.4
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~ 146 (243)
..+++.||||+++|.+|++++|||+||..||.+|+... ..||+|+.++...++.++..+...
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~----~~cP~~~~~l~~~~L~pn~~Lk~~ 87 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNS----PTDPFNRQTLTESMLEPVPELKEQ 87 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSC----SBCSSSCCBCCTTSSEECHHHHHH
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcC----CCCCCCCCCCChhhceECHHHHHH
Confidence 57889999999999999999999999999999999853 799999999999999999887654
No 6
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=3.9e-14 Score=98.38 Aligned_cols=56 Identities=30% Similarity=0.524 Sum_probs=49.3
Q ss_pred CCCCccccccCCCCCCcEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcch
Q psy3978 81 GNEDIKCPICLDLPRAPQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSF 140 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~ 140 (243)
..+.+.|+||++.+.+|+++ +|||+||..||.+|+... ..||+||..+...++..+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~~~~~~ 68 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS----NRCPKCNIVVHQTQPLSG 68 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC----SSCTTTCCCCCSSCSCCC
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC----CcCCCcCcccCccccccc
Confidence 45778999999999999997 999999999999999875 799999999987766543
No 7
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.48 E-value=3e-14 Score=105.16 Aligned_cols=62 Identities=11% Similarity=0.132 Sum_probs=56.6
Q ss_pred CCCCccccccCCCCCCcEEcCCC-ccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCG-HCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~Cg-H~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~ 146 (243)
..+++.||||+++|.+||+++|| |+||..||.+|+... ..||+|+.++...++.++..+...
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~----~~cP~~~~~l~~~~L~pn~~Lk~~ 81 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD----QTDPFNRSPLTMDQIRPNTELKEK 81 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS----CBCTTTCSBCCTTTSEECHHHHHH
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhC----CCCCCCCCCCChhhceEcHHHHHH
Confidence 57899999999999999999999 999999999999864 689999999999999998887654
No 8
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.47 E-value=3.1e-14 Score=109.21 Aligned_cols=63 Identities=21% Similarity=0.385 Sum_probs=54.2
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC-CCCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL-GDLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~-~~l~~~~~~~~~ 146 (243)
..+++.||||++.+.+|++++|||+||..||..|+.... ..||+||..+.. ..+.++..+...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~~~~~~n~~l~~~ 112 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQV---FSCPACRYDLGRSYAMQVNQPLQTV 112 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC---CBCTTTCCBCCTTCCCCCCHHHHHH
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCc---CCCCCCCccCCCCCCCCCCHHHHHH
Confidence 356789999999999999999999999999999998543 699999999987 677777776543
No 9
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.46 E-value=1.6e-14 Score=106.55 Aligned_cols=62 Identities=27% Similarity=0.643 Sum_probs=54.3
Q ss_pred CCCCccccccCCCCCCcEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~ 146 (243)
..+.+.|+||++.+.+|+++ +|||+||..||.+|+... ..||+|+..+...++.++..+...
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~~l~~n~~l~~~ 81 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK----TQCPTCCVTVTEPDLKNNRILDEL 81 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC----CBCTTTCCBCCGGGCEECHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC----CCCCCCCCcCChhhCCcCHHHHHH
Confidence 35678999999999999998 899999999999999865 699999999998888888776543
No 10
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=6e-14 Score=99.86 Aligned_cols=62 Identities=32% Similarity=0.749 Sum_probs=52.5
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCC--CCCCCCCCCCccccCCCCcchhH
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSD--KSWRKCPICYEAVHLGDLKSFRS 142 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~--~~~~~CP~Cr~~~~~~~l~~~~~ 142 (243)
..+.+.|+||++.+.+|++++|||+||..||..|+.... .....||+|+..+...++.++..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSC
T ss_pred CccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHH
Confidence 467789999999999999999999999999999999841 11279999999998877776654
No 11
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=4.1e-14 Score=96.54 Aligned_cols=54 Identities=31% Similarity=0.682 Sum_probs=47.3
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l 137 (243)
..+.+.|+||++.+.+|+.++|||.||..||.+|+.... ..||+||..+...++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSS---PKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSS---CCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCc---CCCCCCCcCCChhhc
Confidence 467889999999999999999999999999999996432 689999999877654
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.8e-14 Score=97.13 Aligned_cols=56 Identities=38% Similarity=0.843 Sum_probs=47.9
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l 137 (243)
..+.+.|+||++.+.+|++++|||.||..||..|+.... ....||+||..+..+++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSC-SCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCC-CCCCCCCCCCcCCcccC
Confidence 567889999999999999999999999999999997421 12689999999887654
No 13
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=1.4e-13 Score=97.67 Aligned_cols=58 Identities=26% Similarity=0.624 Sum_probs=49.6
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHH
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSV 143 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~ 143 (243)
..+.+.|+||++.+.+|++++|||+||..||.+|+... ..||+||..+. ..+.++..+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~-~~~~~~~~l 69 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRAT----PRCYICDQPTG-GIFNPAKEL 69 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHC----SBCSSSCCBCC-SCCEECHHH
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCC----CcCCCcCcccc-ccCCcHHHH
Confidence 45678999999999999999999999999999999875 79999999986 555555444
No 14
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.44 E-value=4e-14 Score=97.70 Aligned_cols=56 Identities=29% Similarity=0.698 Sum_probs=49.7
Q ss_pred CCCCccccccCCCCCCc-------EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcch
Q psy3978 81 GNEDIKCPICLDLPRAP-------QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSF 140 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p-------~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~ 140 (243)
..++..|+||++.+.+| +.++|||.||..||.+|+... ..||+||..+...++.++
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINHKRYHPI 69 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCCBCCCCSCCCC
T ss_pred CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC----CCCCCCCCccChhheeec
Confidence 46778999999998887 889999999999999999877 699999999998877654
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.43 E-value=9.8e-14 Score=96.96 Aligned_cols=52 Identities=29% Similarity=0.599 Sum_probs=45.4
Q ss_pred CCCCccccccCCCCCCcEEcC-CCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTR-CGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~-CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..+++.|+||++.+.+|++++ |||+||..||.+|+.... ...||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD--EHTCPTCHQNDVS 64 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSS--SSCCSSSCCSSCC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcC--CCcCCCCCCcCCC
Confidence 467889999999999999999 999999999999998753 2689999997544
No 16
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.43 E-value=5.8e-14 Score=95.51 Aligned_cols=56 Identities=25% Similarity=0.619 Sum_probs=47.6
Q ss_pred CCccccccCC-CCCCc----EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchh
Q psy3978 83 EDIKCPICLD-LPRAP----QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFR 141 (243)
Q Consensus 83 ~~~~CpICl~-~~~~p----~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 141 (243)
+++.||||++ .+.+| ++++|||+||..||.+|+.... ..||+||..+...++.+++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~~~~~~~ 62 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGA---GNCPECGTPLRKSNFRVQL 62 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTS---SSCTTTCCCCSSCCCEEEC
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCC---CcCCCCCCccccccceeec
Confidence 4678999999 88887 5689999999999999987643 6899999999988876653
No 17
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=3.6e-14 Score=106.55 Aligned_cols=73 Identities=29% Similarity=0.643 Sum_probs=56.9
Q ss_pred CChhhHhhhhccCCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhH
Q psy3978 69 VKWEYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRS 142 (243)
Q Consensus 69 ~~~~~~~~v~~~~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~ 142 (243)
..|+.+........+.+.|+||++.+.+|++++|||+||..||..|+..... ...||+|+..+...++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~-~~~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 6 LRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKG-PSQCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp SSHHHHHHHHHHHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSS-SCCCTTTSCCCCTTTCBCCCS
T ss_pred HHHHHHHHHHHhccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCC-CCCCcCCCCcCCHhhcCccHH
Confidence 3455554443334567899999999999999999999999999999986532 258999999998877766543
No 18
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.42 E-value=2.1e-14 Score=109.17 Aligned_cols=77 Identities=26% Similarity=0.598 Sum_probs=61.6
Q ss_pred CCcccCChhhHhhhhccCCCCccccccCCCCCCcEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhH
Q psy3978 64 DPDQLVKWEYIQQIRGFGNEDIKCPICLDLPRAPQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRS 142 (243)
Q Consensus 64 ~~~~~~~~~~~~~v~~~~~~~~~CpICl~~~~~p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~ 142 (243)
+++...+|...........+++.||||++.+.+|+++ +|||+||..||..|+. ..||+|+..+...++.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~------~~CP~Cr~~~~~~~~~~n~~ 75 (117)
T 1jm7_B 2 EPDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------TGCPVCYTPAWIQDLKINRQ 75 (117)
T ss_dssp CSSTTCCCHHHHHHHHHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT------TBCSSSCCBCSCSSCCCCHH
T ss_pred CCCcccCccchHHHHHhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc------CCCcCCCCcCccccccccHH
Confidence 3444556665444333457889999999999999999 9999999999999986 47999999998888888877
Q ss_pred HHHh
Q psy3978 143 VIKR 146 (243)
Q Consensus 143 ~~~~ 146 (243)
+...
T Consensus 76 l~~l 79 (117)
T 1jm7_B 76 LDSM 79 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 19
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.42 E-value=1.2e-14 Score=102.48 Aligned_cols=62 Identities=29% Similarity=0.647 Sum_probs=51.6
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCC---CCCCCCCCCCccccCCCCcchhH
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSD---KSWRKCPICYEAVHLGDLKSFRS 142 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~---~~~~~CP~Cr~~~~~~~l~~~~~ 142 (243)
..+++.|+||++.+.+|++++|||+||..||.+|+.... .....||+||..+...++.++..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~ 73 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQH 73 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSS
T ss_pred cccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHH
Confidence 467889999999999999999999999999999987631 11378999999998776666544
No 20
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=7.9e-14 Score=99.22 Aligned_cols=62 Identities=34% Similarity=0.764 Sum_probs=52.0
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhC--CCCCCCCCCCCccccCCCCcchhH
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALS--DKSWRKCPICYEAVHLGDLKSFRS 142 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~--~~~~~~CP~Cr~~~~~~~l~~~~~ 142 (243)
..+.+.|+||++.+.+|++++|||.||..|+..|+... ......||+|+..+...++.++..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~ 79 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRH 79 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCC
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHH
Confidence 46778999999999999999999999999999999872 111279999999998877776654
No 21
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=109.03 Aligned_cols=62 Identities=19% Similarity=0.401 Sum_probs=54.1
Q ss_pred CCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC-CCcchhHHHHh
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG-DLKSFRSVIKR 146 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~-~l~~~~~~~~~ 146 (243)
.+.+.|+||++.+.+|++++|||+||..||..|+.... ..||+||..+... .+.++..+...
T Consensus 76 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~~~l~~n~~l~~l 138 (150)
T 1z6u_A 76 EQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQV---FSCPACRHDLGQNYIMIPNEILQTL 138 (150)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTC---CBCTTTCCBCCTTCCCCBCHHHHHH
T ss_pred ccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCC---CcCCCCCccCCCCCCCCCCHHHHHH
Confidence 46789999999999999999999999999999998653 5899999999887 77777776544
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.40 E-value=7.8e-14 Score=109.04 Aligned_cols=50 Identities=26% Similarity=0.702 Sum_probs=45.1
Q ss_pred CCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
.+++.||||++.+.+|++++|||+||..||..|+... ..||+||..+...
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK----IECPICRKDIKSK 100 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC----SBCTTTCCBCCCE
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC----CcCCCCCCcCCCC
Confidence 4678899999999999999999999999999999865 6899999998654
No 23
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=99.90 Aligned_cols=66 Identities=23% Similarity=0.496 Sum_probs=55.5
Q ss_pred CCCCccccccCCCCCCcEEcC-CCccccHHHHHHHHHhCC--CCCCCCCC--CCcc-ccCCCCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQMTR-CGHCFCWPCILHYLALSD--KSWRKCPI--CYEA-VHLGDLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~-CgH~FC~~Ci~~~~~~~~--~~~~~CP~--Cr~~-~~~~~l~~~~~~~~~ 146 (243)
..+++.||||+++|.+||+++ |||+||..||.+||.... .....||+ |+.. +...++.++..+...
T Consensus 4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~ 75 (94)
T 2yu4_A 4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRA 75 (94)
T ss_dssp CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHH
T ss_pred CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHH
Confidence 467899999999999999995 999999999999998641 12268999 9887 888889888887654
No 24
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.39 E-value=4e-13 Score=102.18 Aligned_cols=62 Identities=31% Similarity=0.565 Sum_probs=53.8
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHH
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIK 145 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~ 145 (243)
..+.+.||||++.+.+|+.++|||+||..||..|+.... ..||+||..+...++.++..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~~~~~~~~l~~ 76 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLENQLFPDNFAKR 76 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCGGGCEECHHHHH
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC---CCCCCCCCCcCHHhcccCHHHHH
Confidence 567889999999999999999999999999999998764 48999999998877766655543
No 25
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.39 E-value=8.2e-14 Score=94.00 Aligned_cols=54 Identities=30% Similarity=0.715 Sum_probs=47.3
Q ss_pred CCccccccCCCCCCc-------EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcch
Q psy3978 83 EDIKCPICLDLPRAP-------QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSF 140 (243)
Q Consensus 83 ~~~~CpICl~~~~~p-------~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~ 140 (243)
+++.|+||++.+.+| +.++|||.||..||.+|+..+ ..||+||..+...++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~~~~~ 62 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINHKRYHPI 62 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC----SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC----CCCCCCCccCCccceeee
Confidence 467899999998876 789999999999999999885 699999999988776654
No 26
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.38 E-value=2e-13 Score=102.17 Aligned_cols=61 Identities=31% Similarity=0.649 Sum_probs=51.4
Q ss_pred CCCCccccccCCCCCCcEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC----CCcchhHHHH
Q psy3978 81 GNEDIKCPICLDLPRAPQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG----DLKSFRSVIK 145 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~----~l~~~~~~~~ 145 (243)
..+++.|+||++.+.+|+++ +|||+||..||..|+... ..||+|+..+... .+.++..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~~~~~~l~~n~~l~~ 77 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS----KYCPICDVQVHKTRPLLNIRSDKTLQD 77 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC----SBCTTTCCBSCSSCGGGGEEECHHHHH
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC----CcCcCCCccccccCcccccCcCHHHHH
Confidence 35788999999999999997 999999999999999875 7999999998765 4555555543
No 27
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=7.2e-14 Score=96.77 Aligned_cols=51 Identities=25% Similarity=0.625 Sum_probs=45.3
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
..+.+.|+||++.+.+|+.++|||.||..||.+|+... ..||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~----~~CP~Cr~~~~~~ 62 (71)
T 2d8t_A 12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG----KRCALCRQEIPED 62 (71)
T ss_dssp SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS----SBCSSSCCBCCHH
T ss_pred CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC----CcCcCcCchhCHh
Confidence 35678899999999999999999999999999999765 6899999988643
No 28
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.2e-13 Score=90.11 Aligned_cols=47 Identities=43% Similarity=0.978 Sum_probs=41.2
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~C 128 (243)
..+++.|+||++.+.+|++++|||+||..||.+|+.... ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC-GFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS-SCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC-CCCcCcCC
Confidence 567889999999999999999999999999999998632 12689998
No 29
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=5.9e-13 Score=95.49 Aligned_cols=56 Identities=32% Similarity=0.770 Sum_probs=47.7
Q ss_pred CCCCccccccCCCCCC----cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCC
Q psy3978 81 GNEDIKCPICLDLPRA----PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~----p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l 137 (243)
..+.+.|+||++.+.+ |++++|||.||..||.+|+.... ....||+||..+...++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSI-NGVRCPFCSKITRITSL 71 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCS-SCBCCTTTCCCBCCSST
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCC-CCcCCCCCCCcccchhH
Confidence 4677899999999998 99999999999999999998752 12689999998876543
No 30
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.36 E-value=3.4e-13 Score=116.23 Aligned_cols=63 Identities=16% Similarity=0.098 Sum_probs=56.2
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~ 146 (243)
..+.+.||||+++|.+||+++|||+||..||.+|+.... ..||+|+.++...++.++..+...
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~---~~cP~~~~~~~~~~l~~n~~l~~~ 267 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG---HFNPVTRSPLTQEQLIPNLAMKEV 267 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTC---SSCTTTCCCCCGGGCEECHHHHHH
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCC---CCCcCCCCCCchhcCcccHHHHHH
Confidence 467899999999999999999999999999999998753 459999999998899998887654
No 31
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.36 E-value=5.4e-13 Score=108.53 Aligned_cols=63 Identities=16% Similarity=0.095 Sum_probs=56.7
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~ 146 (243)
.++.+.||||+++|.+||+++|||+||..||..|+.... ..||+|+.++...++.+|..+...
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~---~tcP~t~~~l~~~~L~pN~~Lk~~ 165 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG---HFDPVTRSPLTQDQLIPNLAMKEV 165 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC---SBCTTTCCBCCGGGCEECHHHHHH
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC---CCCCCCcCCCChhhCcchHHHHHH
Confidence 578899999999999999999999999999999998753 479999999998899999887654
No 32
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.2e-13 Score=92.43 Aligned_cols=50 Identities=32% Similarity=0.778 Sum_probs=44.2
Q ss_pred CCCCccccccCCCCCCc-------EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLPRAP-------QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p-------~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..+...|+||++.+.+| +.++|||.||..||.+|+... ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC----SSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC----CCCCCCCCccCc
Confidence 45778899999998877 889999999999999999885 699999998764
No 33
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.32 E-value=7.4e-13 Score=93.10 Aligned_cols=56 Identities=21% Similarity=0.550 Sum_probs=46.7
Q ss_pred CCCCccccccCCCCCCc---EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcch
Q psy3978 81 GNEDIKCPICLDLPRAP---QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSF 140 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p---~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~ 140 (243)
..+...|+||++.+..+ +.++|||.||..||.+|+... ..||+||..+...++.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH----DSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT----CSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC----CcCcCcCCccCCcccCCC
Confidence 45678899999988765 557999999999999999765 689999999987766543
No 34
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.30 E-value=1.8e-12 Score=84.83 Aligned_cols=48 Identities=27% Similarity=0.670 Sum_probs=41.8
Q ss_pred CCCccccccCCCCCC----cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 82 NEDIKCPICLDLPRA----PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 82 ~~~~~CpICl~~~~~----p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.++..|+||++.+.+ ++.++|||.||..||.+|+... ..||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG----YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT----CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC----CcCCCCCCcCC
Confidence 456789999998865 7779999999999999999987 68999998764
No 35
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.30 E-value=1e-12 Score=99.49 Aligned_cols=55 Identities=36% Similarity=0.714 Sum_probs=48.1
Q ss_pred CCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcc
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKS 139 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~ 139 (243)
.+++.||||++.+.+|+.++|||+||..||.+|+.... ..||+||..+...++..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHLFCRICILRCLKVMG---SYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC---SBCTTTCCBCCGGGCBC
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCc---CcCCCCCCCCCHhhccc
Confidence 35678999999999999999999999999999998743 68999999998766543
No 36
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.29 E-value=2.2e-12 Score=88.17 Aligned_cols=48 Identities=33% Similarity=0.855 Sum_probs=42.7
Q ss_pred CCCccccccCCCCCCc-EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 82 NEDIKCPICLDLPRAP-QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p-~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.++..|+||++.+.+| +.++|||.||..|+.+|+..+ ..||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~ 51 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN----PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS----CSTTTTCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc----CcCcCCChhhH
Confidence 4567899999999987 678999999999999999876 69999998875
No 37
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.29 E-value=3.3e-13 Score=102.04 Aligned_cols=51 Identities=25% Similarity=0.681 Sum_probs=45.0
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..+++.|+||++.+.+|++++|||+||..||.+|+.... ..||+||..+..
T Consensus 12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 62 (115)
T 3l11_A 12 SLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKAS---LCCPFCRRRVSS 62 (115)
T ss_dssp CHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTT---SBCTTTCCBCHH
T ss_pred CCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCc---CCCCCCCcccCc
Confidence 456788999999999999999999999999999997543 789999998863
No 38
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.29 E-value=6.5e-13 Score=106.72 Aligned_cols=63 Identities=29% Similarity=0.635 Sum_probs=51.4
Q ss_pred CCCCccccccCCCCCCcEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCccccC-CCCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL-GDLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~-~~l~~~~~~~~~ 146 (243)
..+.+.||||++.+.+|+.+ +|||+||..||..|+.... ..||+||..+.. ..+.++..+...
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~~~l~~~~~l~~~ 115 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGN---KECPTCRKKLVSKRSLRPDPNFDAL 115 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTC---CBCTTTCCBCCSGGGEEECHHHHHH
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCc---CCCCCCCCcCCCcccCCcCHHHHHH
Confidence 34667899999999999997 9999999999999998643 789999999854 456666665543
No 39
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.7e-12 Score=85.78 Aligned_cols=47 Identities=30% Similarity=0.818 Sum_probs=40.1
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~C 128 (243)
..+.+.|+||++.+.+|++++|||+||..||.+|+.... ....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLE-RDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSC-CSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcC-CCCCCCCC
Confidence 457789999999999999999999999999999976421 12789998
No 40
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=4.7e-12 Score=86.85 Aligned_cols=51 Identities=29% Similarity=0.671 Sum_probs=42.9
Q ss_pred CCCCccccccCCCCC---CcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 81 GNEDIKCPICLDLPR---APQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 81 ~~~~~~CpICl~~~~---~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
..+...|+||++.+. .++.++|||.||..||.+|+... ..||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN----KKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC----SBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC----CCCcCcCccccCc
Confidence 356678999999874 45779999999999999999986 5899999988653
No 41
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.27 E-value=2e-12 Score=84.69 Aligned_cols=49 Identities=27% Similarity=0.695 Sum_probs=41.9
Q ss_pred CCCCccccccCCCCCC---cEEcC-CCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 81 GNEDIKCPICLDLPRA---PQMTR-CGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~---p~~~~-CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.+++..|+||++.+.. ++.++ |||.||..||.+|+..+ ..||+||+.+.
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~----~~CP~Cr~~~~ 54 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH----STCPLCRLTVV 54 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC----CSCSSSCCCSC
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcC----CcCcCCCCEeE
Confidence 3567789999999877 67776 99999999999999765 68999998764
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.26 E-value=2.9e-12 Score=90.58 Aligned_cols=54 Identities=19% Similarity=0.506 Sum_probs=43.6
Q ss_pred CCCCccccccCCCCC--CcEEcC--CCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCC
Q psy3978 81 GNEDIKCPICLDLPR--APQMTR--CGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137 (243)
Q Consensus 81 ~~~~~~CpICl~~~~--~p~~~~--CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l 137 (243)
.++++.||||++.+. ++++++ |||+||..|+.+++.... ..||.||+.+....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~---~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDEN---GLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSC---SBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCC---CCCCCCCCccCCCch
Confidence 467889999999774 445555 999999999999886433 789999999987654
No 43
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.25 E-value=3e-12 Score=92.95 Aligned_cols=49 Identities=29% Similarity=0.637 Sum_probs=42.5
Q ss_pred CCCccccccCCCCCC---cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRA---PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~---p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.++..|+||++.+.. ++.++|||.||..||..|+... ..||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS----GTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT----CBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC----CcCcCcCccCCC
Confidence 466789999998876 6778999999999999999865 699999998764
No 44
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=2.8e-12 Score=89.57 Aligned_cols=50 Identities=26% Similarity=0.580 Sum_probs=43.4
Q ss_pred CCCCccccccCCCCCCc---EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLPRAP---QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p---~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..+...|+||++.+..+ +.++|||.||..||.+|+... ..||+||+.+..
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~----~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN----RTCPICRADSGP 72 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC----SSCTTTCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC----CcCcCcCCcCCC
Confidence 34667899999988876 678999999999999999876 689999998764
No 45
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.23 E-value=6e-12 Score=101.46 Aligned_cols=62 Identities=31% Similarity=0.565 Sum_probs=53.7
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHH
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIK 145 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~ 145 (243)
..+.+.||||++.+.+|+.++|||+||..||.+|+.... ..||+||..+...++.++..+..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~---~~CP~Cr~~~~~~~~~~~~~~~~ 76 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG---HKCPVDNEILLENQLFPDNFAKR 76 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC---SBCTTTCCBCCGGGCEECHHHHH
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC---CCCCCCccCcchhhhhhhHHHHH
Confidence 578899999999999999999999999999999998764 58999999998877766655443
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6.6e-12 Score=87.28 Aligned_cols=50 Identities=26% Similarity=0.641 Sum_probs=42.4
Q ss_pred CCCCccccccCCCCCCcEE---cCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLPRAPQM---TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~---~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..++..|+||++.+..+.. ++|||.||..||.+|+... ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~----~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR----KVCPLCNMPVLQ 64 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC----SBCTTTCCBCSS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC----CcCCCcCccccc
Confidence 4567789999999876643 4999999999999999886 689999998764
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=2.5e-12 Score=98.83 Aligned_cols=56 Identities=30% Similarity=0.747 Sum_probs=48.7
Q ss_pred CCCCccccccCCCCCCc-------EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcch
Q psy3978 81 GNEDIKCPICLDLPRAP-------QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSF 140 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p-------~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~ 140 (243)
..+++.|+||++.+.+| +.++|||+||..||.+|+... ..||+|+..+....+.++
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~l~~l 66 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINHKRYHPI 66 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC----SBCTTTCCBCTTTCEEEC
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC----CCCCCCCCcCcccccccc
Confidence 45788999999999888 889999999999999999876 699999999987766554
No 48
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.4e-12 Score=89.78 Aligned_cols=51 Identities=29% Similarity=0.677 Sum_probs=44.5
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGD 136 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~ 136 (243)
..+...|+||++.+.+ +.++|||.||..||.+|+... ..||+||..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRH----RNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCC----SSCHHHHHCTTCCC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCc----CcCCCcCCcccCCC
Confidence 4567889999999998 889999999999999998854 79999999887544
No 49
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.21 E-value=2e-12 Score=101.54 Aligned_cols=51 Identities=24% Similarity=0.598 Sum_probs=45.6
Q ss_pred CCCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.++++.||||++.+.+|+.++|||+||..||.+|+.... ..||+||..+..
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~---~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGP---QNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSC---EECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCC---CCCCCCCCcccc
Confidence 678899999999999999999999999999999997653 589999997643
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.20 E-value=1.2e-11 Score=93.09 Aligned_cols=54 Identities=22% Similarity=0.544 Sum_probs=42.4
Q ss_pred CCCccccccCCCCCCcE------------------EcCCCccccHHHHHHHHHhCC-CCCCCCCCCCccccCC
Q psy3978 82 NEDIKCPICLDLPRAPQ------------------MTRCGHCFCWPCILHYLALSD-KSWRKCPICYEAVHLG 135 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~------------------~~~CgH~FC~~Ci~~~~~~~~-~~~~~CP~Cr~~~~~~ 135 (243)
..+..|+||++.+..+. .++|||.||..||..|+.... .....||+||..+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34568999999886654 689999999999999996532 1226999999988643
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=3.3e-12 Score=84.36 Aligned_cols=47 Identities=28% Similarity=0.704 Sum_probs=41.1
Q ss_pred CCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
.+.+.|+||++.+.+|++++|||+||..||..| . ..||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~----~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---G----MQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---S----SSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---C----CCCCcCCcEeecC
Confidence 567889999999999999999999999999762 1 6899999988754
No 52
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.15 E-value=9.2e-12 Score=106.25 Aligned_cols=64 Identities=30% Similarity=0.536 Sum_probs=55.8
Q ss_pred CCCCccccccCCCCCCcEEc-CCCccccHHHHHHHHHhCCCCCCCCCC--CCccccCCCCcchhHHHHh
Q psy3978 81 GNEDIKCPICLDLPRAPQMT-RCGHCFCWPCILHYLALSDKSWRKCPI--CYEAVHLGDLKSFRSVIKR 146 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~--Cr~~~~~~~l~~~~~~~~~ 146 (243)
...++.||||+++|.+||+. .|||+||..||.+|+.... ...||+ |+..+...++.++..+...
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~--~~~CPvtGCr~~l~~~dL~pN~~L~~l 244 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYT--TRDCPQAACSQVVSMRDFVRDPIMELR 244 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCS--CEECSGGGCSCEECGGGEEECHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCC--CCCCCcccccCcCchhhCCcCHHHHHH
Confidence 57889999999999999984 9999999999999997642 268999 9999999999998887543
No 53
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.09 E-value=2.1e-11 Score=93.56 Aligned_cols=56 Identities=30% Similarity=0.747 Sum_probs=48.9
Q ss_pred CCCCccccccCCCCCCc-------EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcch
Q psy3978 81 GNEDIKCPICLDLPRAP-------QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSF 140 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p-------~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~ 140 (243)
..+...|+||++.+.++ +.++|||.||..||.+|+... ..||+||..+..+++.++
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~----~~CP~Cr~~~~~~~~~~~ 131 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA----NTCPTCRKKINHKRYHPI 131 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC----SBCTTTCCBCCGGGEEEE
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC----CCCCCCCCcCChhcceee
Confidence 46778899999988776 889999999999999999987 799999999987776554
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.1e-11 Score=85.73 Aligned_cols=49 Identities=22% Similarity=0.496 Sum_probs=40.2
Q ss_pred CCccccccCCCCCC--------------cEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 83 EDIKCPICLDLPRA--------------PQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 83 ~~~~CpICl~~~~~--------------p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
++..|+||++.+.+ ++.+ +|||.||..||.+|+..+ ..||+||+.+...
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN----NRCPLCQQDWVVQ 77 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC----CBCTTTCCBCCEE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC----CCCCCcCCCcchh
Confidence 45679999998866 4444 699999999999999876 6999999987643
No 55
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.05 E-value=1e-10 Score=79.32 Aligned_cols=49 Identities=24% Similarity=0.641 Sum_probs=43.0
Q ss_pred CCCCccccccCCCCCCcEEc--CCCcc-ccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 81 GNEDIKCPICLDLPRAPQMT--RCGHC-FCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~--~CgH~-FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
..++..|+||++.+.+++.+ +|||. ||..|+.+|+..+ ..||+||..+.
T Consensus 5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~ 56 (64)
T 2vje_A 5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN----KPCPVCRQPIQ 56 (64)
T ss_dssp CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT----CCCTTTCCCCC
T ss_pred CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC----CcCCCcCcchh
Confidence 35667899999999999987 99999 8999999999765 68999999875
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.04 E-value=4.1e-11 Score=83.59 Aligned_cols=46 Identities=35% Similarity=0.787 Sum_probs=40.7
Q ss_pred CCCCccccccCCCCCCcEEcCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHC-FCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~-FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..++..|+||++.+.+|+.++|||. ||..|+..| ..||+||..+..
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 67 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC--------SBCTTTCCBCSE
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC--------ccCCCcCcCccC
Confidence 3467889999999999999999999 999999876 489999998764
No 57
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.03 E-value=1.3e-10 Score=78.10 Aligned_cols=54 Identities=19% Similarity=0.379 Sum_probs=47.9
Q ss_pred CccccccCCCCCCcEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchh
Q psy3978 84 DIKCPICLDLPRAPQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFR 141 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~ 141 (243)
.+.||||++.+.+|+++ +|||+|++.||.+|+..+ ..||+++.++...++.++.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~----~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT----GNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH----SBCTTTCCBCCGGGCEECC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC----CCCcCCcCCCChhhcEECc
Confidence 36799999999999999 999999999999999876 4699999999888877654
No 58
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.01 E-value=2.9e-10 Score=102.42 Aligned_cols=51 Identities=22% Similarity=0.599 Sum_probs=44.6
Q ss_pred CCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
.....|+||++.+.+|+.++|||.||..|+..|+.... ..||+||..+...
T Consensus 330 ~~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~---~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 330 STFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEG---QGCPFCRCEIKGT 380 (389)
T ss_dssp TSSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTC---SBCTTTCCBCCEE
T ss_pred CCCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCC---CCCCCCCCccCCc
Confidence 44579999999999999999999999999999998433 7899999988753
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.4e-10 Score=80.96 Aligned_cols=45 Identities=36% Similarity=0.837 Sum_probs=39.4
Q ss_pred CCCccccccCCCCCCcEEcCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHC-FCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~-FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.++..|+||++.+.+|+.++|||. ||..|+... ..||+||..+..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV--------DKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC--------SBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC--------CCCccCCceecC
Confidence 567789999999999999999999 999999531 689999998864
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.97 E-value=2.5e-10 Score=77.13 Aligned_cols=47 Identities=28% Similarity=0.678 Sum_probs=41.3
Q ss_pred CCccccccCCCCCCcEEc--CCCcc-ccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 83 EDIKCPICLDLPRAPQMT--RCGHC-FCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~--~CgH~-FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
....|+||++.+.+++++ +|||. ||..|+.+|+..+ ..||+||.++.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~----~~CPiCR~~i~ 55 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG----ASCPICKKEIQ 55 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT----CBCTTTCCBCC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC----CcCCCcCchhh
Confidence 456799999999999887 99998 9999999988765 68999999875
No 61
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.96 E-value=5e-10 Score=83.56 Aligned_cols=47 Identities=23% Similarity=0.487 Sum_probs=39.8
Q ss_pred CCccccccCCCCCCc------------------EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 83 EDIKCPICLDLPRAP------------------QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 83 ~~~~CpICl~~~~~p------------------~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
++..|+||++.+.++ +.++|||.||..||.+|+..+ ..||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~----~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC----SBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC----CcCcCCCCcce
Confidence 456799999988755 347999999999999999876 79999999864
No 62
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=6.4e-10 Score=80.91 Aligned_cols=55 Identities=27% Similarity=0.617 Sum_probs=42.7
Q ss_pred CCCccccccCCCCCCcEEc---CCCccccHHHHHHHHHhC--CC--CCCCCCC--CCcc--ccCCC
Q psy3978 82 NEDIKCPICLDLPRAPQMT---RCGHCFCWPCILHYLALS--DK--SWRKCPI--CYEA--VHLGD 136 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~---~CgH~FC~~Ci~~~~~~~--~~--~~~~CP~--Cr~~--~~~~~ 136 (243)
.+.+.|+||++.+..|.++ +|||.||..|+.+|+... .+ ....||. |+.. +....
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~ 68 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE 68 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH
Confidence 4678899999999888664 799999999999999853 11 1258999 9988 65443
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.81 E-value=9.4e-10 Score=77.68 Aligned_cols=45 Identities=27% Similarity=0.741 Sum_probs=39.5
Q ss_pred CCCccccccCCCCCCcEEcCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHC-FCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~-FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.++..|+||++.+.+++.++|||. ||..|+..| ..||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~--------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQL--------QSCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC--------SBCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhc--------CcCCCCCchhhC
Confidence 456789999999999999999999 999998754 489999998864
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=4.4e-09 Score=72.08 Aligned_cols=46 Identities=22% Similarity=0.566 Sum_probs=39.9
Q ss_pred CCCCccccccCCCCCCcEEcCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHC-FCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~-FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..+...|+||++.+.+++.++|||. ||..|+.. . ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~----~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----F----QQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----C----SSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----C----CCCCCCCcchhc
Confidence 4567789999999999999999999 99999983 1 689999998764
No 65
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=1.3e-08 Score=71.92 Aligned_cols=52 Identities=25% Similarity=0.531 Sum_probs=42.7
Q ss_pred CCCCccccccCCCC--CCcEEcCCC-----ccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLP--RAPQMTRCG-----HCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~--~~p~~~~Cg-----H~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..++..|.||++.+ .++++++|. |.|+..||.+|+..+.. ..||+|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~--~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT--RCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCC--SBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCC--CCCCCCCCeeec
Confidence 34567899999876 467888996 99999999999997632 589999998865
No 66
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.70 E-value=2.1e-09 Score=81.52 Aligned_cols=47 Identities=23% Similarity=0.480 Sum_probs=0.9
Q ss_pred CCccccccCCCCCCc-----------------EE-cCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 83 EDIKCPICLDLPRAP-----------------QM-TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 83 ~~~~CpICl~~~~~p-----------------~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
++..|+||++.+.++ ++ ++|+|.||..||.+|+..+ ..||+||..+.
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~----~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR----QVCPLDNREWE 111 (117)
T ss_dssp CC-------------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC----CcCCCCCCeee
Confidence 445799999988653 22 5899999999999999886 69999999764
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.62 E-value=5.2e-09 Score=93.36 Aligned_cols=46 Identities=33% Similarity=0.755 Sum_probs=41.0
Q ss_pred CCCCccccccCCCCCCcEEcCCCcc-ccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCGHC-FCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~CgH~-FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..++..|+||++.+.+|+.++|||. ||..|+..| ..||+||..+..
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~--------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL--------RKCPICRGIIKG 338 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC--------SBCTTTCCBCCE
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC--------CcCCCCCCCccC
Confidence 4577899999999999999999999 999999866 489999998753
No 68
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.30 E-value=5e-07 Score=65.66 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=38.3
Q ss_pred cccccCCCCCC-cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 86 KCPICLDLPRA-PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 86 ~CpICl~~~~~-p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.|++|.-++.. .+++||+|.||..|+..|.+... ..||.|+.++.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~---k~Cp~C~~~V~ 48 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGD---KMCPGCSDPVQ 48 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTC---CBCTTTCCBCS
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccC---CCCcCcCCeee
Confidence 58899886654 57799999999999999988765 79999999875
No 69
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=8.5e-07 Score=61.56 Aligned_cols=50 Identities=26% Similarity=0.588 Sum_probs=39.9
Q ss_pred CCCccccccCCCCCCcEE-cCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 82 NEDIKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.....|.||.+.+..... ..|+|.|+..||.+||+.+.. ..||+|+..+.
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~--~~CP~Cr~~w~ 63 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAE--PRCPHCNDYWP 63 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSS--CCCTTTCSCCC
T ss_pred CCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCC--CCCCCCcCcCC
Confidence 344579999998875544 489999999999999986532 68999998765
No 70
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.13 E-value=2e-06 Score=57.21 Aligned_cols=52 Identities=21% Similarity=0.459 Sum_probs=41.1
Q ss_pred CCCCccccccCCCCCCcEEcCCC--c---cccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRCG--H---CFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~Cg--H---~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.++...|.||++...++.++||. + .|+..||.+|+..+.. ..||+|+..+..
T Consensus 3 ~~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~--~~C~~C~~~~~~ 59 (60)
T 1vyx_A 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRN--TACQICGVVYNT 59 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTC--SBCTTTCCBCCC
T ss_pred CCCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCC--CccCCCCCeeec
Confidence 34667899999877777778864 4 8999999999986532 689999987753
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.73 E-value=7.2e-06 Score=72.41 Aligned_cols=52 Identities=21% Similarity=0.581 Sum_probs=38.8
Q ss_pred CCccccccCCCCCC----cEE----cCCCccccHHHHHHHHHhCCC-------CCCCCCCCCccccC
Q psy3978 83 EDIKCPICLDLPRA----PQM----TRCGHCFCWPCILHYLALSDK-------SWRKCPICYEAVHL 134 (243)
Q Consensus 83 ~~~~CpICl~~~~~----p~~----~~CgH~FC~~Ci~~~~~~~~~-------~~~~CP~Cr~~~~~ 134 (243)
....|+||++.+.+ |.. ..|||.|+..||.+|+..... ....||.|+.++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 45679999997765 322 379999999999999986321 11379999998763
No 72
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.45 E-value=8.2e-05 Score=54.12 Aligned_cols=87 Identities=9% Similarity=0.175 Sum_probs=53.6
Q ss_pred CCccccccCCC-CCCcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc--CCCCcchhHHHHhhhccCc-ccee
Q psy3978 83 EDIKCPICLDL-PRAPQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH--LGDLKSFRSVIKRARAVNE-EVTF 156 (243)
Q Consensus 83 ~~~~CpICl~~-~~~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~--~~~l~~~~~~~~~~~~~~~-~~~l 156 (243)
+++.|+||.+. +..|+. +.|+|+||..|+..+...... . . +..+. ..+.. . ....-..+ ...+
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~--~--~--~h~l~~~~~~~~----~-~~~~C~~H~~e~l 70 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKP--F--T--GHRLIEPIPDSH----I-RGLMCLEHEDEKV 70 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSS--S--T--TCCBSSCCCSCC----S-SCCCCSSCSSSCC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCc--c--C--CCeeeccccccC----c-cCCcCcCcCCCcc
Confidence 56889999974 778887 899999999999974332110 0 0 01110 01000 0 01112334 3568
Q ss_pred eeeeecCCCeeEeeccCCCCCCCC
Q psy3978 157 QLMKRERGSTVVSPVAQWDFHPTD 180 (243)
Q Consensus 157 ~l~~r~~~~~~~~~~s~~~~~~~~ 180 (243)
.+++.+.+..++..+.....|..+
T Consensus 71 ~~fC~~~~~~iC~~C~~~~~H~~H 94 (101)
T 2jun_A 71 NMYCVTDDQLICALCKLVGRHRDH 94 (101)
T ss_dssp CEEETTTTEEECHHHHHHTTTSSS
T ss_pred eEECCCCCCccchhcCCCCCcCCC
Confidence 889999999999888876666543
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.66 E-value=0.002 Score=63.93 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=56.8
Q ss_pred ccCCCCccccccCCCCCCcEEcCCC-ccccHHHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHh
Q psy3978 79 GFGNEDIKCPICLDLPRAPQMTRCG-HCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKR 146 (243)
Q Consensus 79 ~~~~~~~~CpICl~~~~~p~~~~Cg-H~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~ 146 (243)
...++++.|||-++++.+||+++-| ++|-+.+|.+|+..+ .+||+-+.++...++.||..+...
T Consensus 886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~----~tdP~Tr~~L~~~~liPN~~Lk~~ 950 (968)
T 3m62_A 886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSD----STDPFNRMPLKLEDVTPNEELRQK 950 (968)
T ss_dssp CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC----CBCTTTCCBCCGGGCEECHHHHHH
T ss_pred cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcC----CCCCCCCCCCCcccccccHHHHHH
Confidence 3468899999999999999999998 699999999999864 689999999999999999887643
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.30 E-value=0.0037 Score=52.67 Aligned_cols=50 Identities=26% Similarity=0.521 Sum_probs=39.8
Q ss_pred CCccccccCCCCCCcEEc-CCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 83 EDIKCPICLDLPRAPQMT-RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~-~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
....|.||.+.......- .|+|.|+..|+..|++... ...||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~--~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNA--EPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCS--SCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCC--CCCCCCCCCCCCC
Confidence 467899999987766553 4999999999999997642 2689999987643
No 75
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.91 E-value=0.065 Score=37.04 Aligned_cols=37 Identities=24% Similarity=0.716 Sum_probs=31.0
Q ss_pred CCCccccccCCCCCCcEEcCC----CccccHHHHHHHHHhC
Q psy3978 82 NEDIKCPICLDLPRAPQMTRC----GHCFCWPCILHYLALS 118 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~C----gH~FC~~Ci~~~~~~~ 118 (243)
...+.|.+|.+.+.+.-...| +|.||..|-..+++.+
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q 53 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQ 53 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhc
Confidence 466789999999998766655 6999999999998865
No 76
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.66 E-value=0.38 Score=42.80 Aligned_cols=61 Identities=25% Similarity=0.473 Sum_probs=44.6
Q ss_pred CccccccCCCCCCcEE-cCCCccccHH--HHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHh
Q psy3978 84 DIKCPICLDLPRAPQM-TRCGHCFCWP--CILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKR 146 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~-~~CgH~FC~~--Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~ 146 (243)
.+.|||-...+..|+. ..|.|.-|.+ -+....... +...||+|.+.+...+|.....+...
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~--~~W~CPIC~k~~~~~dL~ID~~~~~I 312 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQI--PTWQCPVCQIDIALENLAISEFVDDI 312 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHS--CCCBCTTTCCBCCGGGEEEBHHHHHH
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcC--CceeCCCCCcccCHHHeeEcHHHHHH
Confidence 4889999999999987 6899995554 344443333 33899999999988888766555444
No 77
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=91.19 E-value=0.4 Score=42.50 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=44.1
Q ss_pred CccccccCCCCCCcEE-cCCCccccH--HHHHHHHHhCCCCCCCCCCCCccccCCCCcchhHHHHh
Q psy3978 84 DIKCPICLDLPRAPQM-TRCGHCFCW--PCILHYLALSDKSWRKCPICYEAVHLGDLKSFRSVIKR 146 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~-~~CgH~FC~--~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~~ 146 (243)
.+.|||-...+..|+. ..|.|.-|. .-+....... +...||+|.+.+...+|.....+...
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~--~~W~CPiC~k~~~~~dL~ID~~~~~I 278 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKK--PTWICPVCDKKAAYESLILDGLFMEI 278 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHS--CCCBCTTTCSBCCGGGEEEBHHHHHH
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhC--CCeECCCCCcccCHHHeEEcHHHHHH
Confidence 4789999999999987 689999554 4444433333 34799999999988887765555444
No 78
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=86.70 E-value=0.34 Score=34.52 Aligned_cols=49 Identities=24% Similarity=0.593 Sum_probs=37.3
Q ss_pred CCCCccccccCCCCCCcEEcCC-CccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRC-GHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~C-gH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
.-..+.|-.|.-... -.+.| .|-.|..|+...+..+ ..||+|..++..+
T Consensus 25 ~~G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~S----drCpIC~~pLPtk 74 (99)
T 2ko5_A 25 HLGPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVS----NRCPICKMPLPTK 74 (99)
T ss_dssp CSCCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSS----SEETTTTEECCCC
T ss_pred ccCcccChhhccccC--CeeeecchhhHHHHHHHHHhhc----cCCcccCCcCCcc
Confidence 345677998886555 23455 5999999999888877 5899999988754
No 79
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=77.04 E-value=2.3 Score=29.59 Aligned_cols=48 Identities=19% Similarity=0.341 Sum_probs=31.5
Q ss_pred CCCCccccccCCCCCCcEEc---CCCccccHHHHHHH------------HHhCCCCCCCCCCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQMT---RCGHCFCWPCILHY------------LALSDKSWRKCPICY 129 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~---~CgH~FC~~Ci~~~------------~~~~~~~~~~CP~Cr 129 (243)
+..+..|+||--.- ....+ -|+-+|+..|+.+. +.........||.|.
T Consensus 12 ~~~D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 12 VVNDEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCCSCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCCcccCcccccc-ccceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 34667899997533 33334 48999999999885 111122347899994
No 80
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=74.92 E-value=2.5 Score=27.90 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=33.1
Q ss_pred CCccccccCCCCCCcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 83 EDIKCPICLDLPRAPQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
....|.||.+.-. ++ -.|...|+..|+..-+..-..+...||.|....
T Consensus 11 ~~~~C~vC~~~~~--ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 11 PGARCGVCGDGTD--VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp TTCCCTTTSCCTT--CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCcCCCCCCCe--EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 4456999987422 23 269999999999766654444447899997643
No 81
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=69.95 E-value=0.71 Score=26.53 Aligned_cols=15 Identities=27% Similarity=0.680 Sum_probs=8.7
Q ss_pred CCccccccCCCCCCc
Q psy3978 83 EDIKCPICLDLPRAP 97 (243)
Q Consensus 83 ~~~~CpICl~~~~~p 97 (243)
+.+.||||+..+..+
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 446667766655443
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=65.80 E-value=1.5 Score=29.50 Aligned_cols=53 Identities=25% Similarity=0.562 Sum_probs=33.4
Q ss_pred CCCccccccCCCCCCcEEc---CCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRAPQMT---RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~---~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.+...|+||...-....++ .|..-|+..|+.--..........||.|...+..
T Consensus 16 ~~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k 71 (75)
T 2k16_A 16 NQIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK 71 (75)
T ss_dssp CEEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred CCCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence 4456799998865432333 6888999999854322211123789999766543
No 83
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.92 E-value=2.2 Score=29.42 Aligned_cols=30 Identities=27% Similarity=0.569 Sum_probs=21.8
Q ss_pred CCCccccccCCCCCCcEE----cCCCccccHHHH
Q psy3978 82 NEDIKCPICLDLPRAPQM----TRCGHCFCWPCI 111 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~----~~CgH~FC~~Ci 111 (243)
.+...|.+|...|.--.. -.||.+||..|.
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 445679999998753221 369999999884
No 84
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=63.37 E-value=1.5 Score=39.23 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=0.0
Q ss_pred CCccccccCCCCCCcEE----cCCCccccHHHHHHHHHhC---CCCCCCCCCCCccc
Q psy3978 83 EDIKCPICLDLPRAPQM----TRCGHCFCWPCILHYLALS---DKSWRKCPICYEAV 132 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~----~~CgH~FC~~Ci~~~~~~~---~~~~~~CP~Cr~~~ 132 (243)
+...|.+|...|.--.. -.||++||..|....+... .+....|-.|...+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 35679999987753211 3699999999987544221 12235677776544
No 85
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=62.93 E-value=2.1 Score=29.34 Aligned_cols=32 Identities=28% Similarity=0.644 Sum_probs=23.0
Q ss_pred CCCCccccccCCCCCCcEE----cCCCccccHHHHH
Q psy3978 81 GNEDIKCPICLDLPRAPQM----TRCGHCFCWPCIL 112 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~----~~CgH~FC~~Ci~ 112 (243)
..+...|.+|...|.--.. -.||.+||..|..
T Consensus 16 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 16 DDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred CccCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 3455679999998763221 3699999999964
No 86
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=62.72 E-value=2.4 Score=29.24 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=22.6
Q ss_pred CCCccccccCCCCCCcEE----cCCCccccHHHHH
Q psy3978 82 NEDIKCPICLDLPRAPQM----TRCGHCFCWPCIL 112 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~----~~CgH~FC~~Ci~ 112 (243)
.+...|.+|...|.--.. -.||++||..|..
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 455679999997754321 3699999999964
No 87
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=61.84 E-value=3 Score=25.62 Aligned_cols=45 Identities=20% Similarity=0.504 Sum_probs=28.4
Q ss_pred cccccCCCCCCc-EE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 86 KCPICLDLPRAP-QM--TRCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 86 ~CpICl~~~~~p-~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
.|.||...-... ++ -.|...|+..|+..-+..-..+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488888643222 22 2688899999996433333233368999965
No 88
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=61.34 E-value=1.9 Score=32.21 Aligned_cols=29 Identities=24% Similarity=0.494 Sum_probs=21.3
Q ss_pred CccccccCCCCCCcEE----cCCCccccHHHHH
Q psy3978 84 DIKCPICLDLPRAPQM----TRCGHCFCWPCIL 112 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~----~~CgH~FC~~Ci~ 112 (243)
...|.+|...|.--.. -.||++||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 4579999998763211 3699999999954
No 89
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=58.46 E-value=5.5 Score=26.28 Aligned_cols=34 Identities=21% Similarity=0.412 Sum_probs=25.2
Q ss_pred CCCCccccccCCCCCCcEEcCC-CccccHHHHHHHH
Q psy3978 81 GNEDIKCPICLDLPRAPQMTRC-GHCFCWPCILHYL 115 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~~~C-gH~FC~~Ci~~~~ 115 (243)
.++..-|.||.+... -+-+.| |-.||..|..+.-
T Consensus 5 ~ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT-LRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSCCC-EEETTTTSEEECSSHHHHHT
T ss_pred CcCCCeeEEeCCCCe-EEecCCCCceehHHHHHHHc
Confidence 356677999999733 344789 8899999987644
No 90
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=58.30 E-value=4.2 Score=26.19 Aligned_cols=48 Identities=15% Similarity=0.421 Sum_probs=32.2
Q ss_pred CCCCccccccCCCCCCcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 81 GNEDIKCPICLDLPRAPQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
...+..|.||... ..++ -.|...|+..|+..-+.....+...||.|..
T Consensus 8 ~~~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 3456679999973 2233 2688899999997644333333478999964
No 91
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=56.31 E-value=3 Score=29.09 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=22.3
Q ss_pred CCCccccccCCCCCCcEE----cCCCccccHHHHH
Q psy3978 82 NEDIKCPICLDLPRAPQM----TRCGHCFCWPCIL 112 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~----~~CgH~FC~~Ci~ 112 (243)
.+...|.+|...|.--.. -.||.+||..|..
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 41 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLS 41 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSC
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcC
Confidence 455579999997763211 4799999998854
No 92
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=55.87 E-value=25 Score=24.61 Aligned_cols=48 Identities=25% Similarity=0.504 Sum_probs=33.0
Q ss_pred CCccccccCCCCCC---c-EEc---CCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 83 EDIKCPICLDLPRA---P-QMT---RCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 83 ~~~~CpICl~~~~~---p-~~~---~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
....|.||-+..-. . +.. .|+-..|..|..-=.+... ..||-|.....
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~---q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGT---QNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSC---SSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccC---ccccccCCccc
Confidence 45679999985321 1 222 5787889999875444433 79999988775
No 93
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=55.74 E-value=2.7 Score=29.41 Aligned_cols=30 Identities=27% Similarity=0.502 Sum_probs=21.5
Q ss_pred CCccccccCCCCCCcE----EcCCCccccHHHHH
Q psy3978 83 EDIKCPICLDLPRAPQ----MTRCGHCFCWPCIL 112 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~----~~~CgH~FC~~Ci~ 112 (243)
+...|.+|...|.--. --.||++||..|..
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~ 52 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCN 52 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccC
Confidence 3456999998775321 14799999999964
No 94
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=54.56 E-value=4.2 Score=27.17 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=20.2
Q ss_pred ccccccCCCCCCcEE----cCCCccccHHHH
Q psy3978 85 IKCPICLDLPRAPQM----TRCGHCFCWPCI 111 (243)
Q Consensus 85 ~~CpICl~~~~~p~~----~~CgH~FC~~Ci 111 (243)
..|.+|...|.--.. -.||.+||..|.
T Consensus 12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs 42 (73)
T 1vfy_A 12 DACMICSKKFSLLNRKHHCRSCGGVFCQEHS 42 (73)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred CcccCCCCccCCccccccCCCCCEEEccccc
Confidence 479999987753221 369999999885
No 95
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=54.16 E-value=2.8 Score=31.13 Aligned_cols=45 Identities=20% Similarity=0.363 Sum_probs=26.4
Q ss_pred CCCccccccCCCCCCcEE----cCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 82 NEDIKCPICLDLPRAPQM----TRCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~----~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
.+...|..|...|..-.. -.||.+||..|....... ...|-.|..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~----vRVC~~C~~ 65 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG----PRLCLLCQR 65 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--------CCEEHHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC----ceECHHHHH
Confidence 344579999998764311 379999999996543321 145666643
No 96
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=53.97 E-value=5.7 Score=28.42 Aligned_cols=14 Identities=21% Similarity=0.695 Sum_probs=12.1
Q ss_pred cccHHHHHHHHHhC
Q psy3978 105 CFCWPCILHYLALS 118 (243)
Q Consensus 105 ~FC~~Ci~~~~~~~ 118 (243)
.||+.|+.+|+...
T Consensus 42 GFCRNCLskWy~~a 55 (105)
T 2o35_A 42 GFCRNCLSNWYREA 55 (105)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 49999999999853
No 97
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=53.71 E-value=5.8 Score=28.33 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=11.6
Q ss_pred cccHHHHHHHHHh
Q psy3978 105 CFCWPCILHYLAL 117 (243)
Q Consensus 105 ~FC~~Ci~~~~~~ 117 (243)
.||+.|+.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999985
No 98
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=52.60 E-value=12 Score=28.44 Aligned_cols=48 Identities=27% Similarity=0.522 Sum_probs=31.0
Q ss_pred CCccccccCCCCCCcEEcCCCccccHHHHHHHHH-----h--CCCCCCCCCCCCc
Q psy3978 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLA-----L--SDKSWRKCPICYE 130 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~-----~--~~~~~~~CP~Cr~ 130 (243)
.+..|.+|.+--.-----.|-.+||..||..-+. . ...+...||.|..
T Consensus 62 ~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 3456999997432111137899999999986552 1 1223378999964
No 99
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=52.22 E-value=3.3 Score=34.03 Aligned_cols=30 Identities=23% Similarity=0.487 Sum_probs=21.2
Q ss_pred CCccccccCCCCCCcEE----cCCCccccHHHHH
Q psy3978 83 EDIKCPICLDLPRAPQM----TRCGHCFCWPCIL 112 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~----~~CgH~FC~~Ci~ 112 (243)
+...|.+|...|.--.. -.||++||..|-.
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 34579999987753211 4699999998854
No 100
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=51.78 E-value=2.7 Score=33.30 Aligned_cols=50 Identities=16% Similarity=0.341 Sum_probs=31.3
Q ss_pred CCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
.+..|.+|.+.-.--.--.|...|+..|+..-+..-..+...||.|+..-
T Consensus 3 ~~~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 44569999864221111258888999997654443333347899998654
No 101
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=50.87 E-value=6.4 Score=25.39 Aligned_cols=40 Identities=25% Similarity=0.613 Sum_probs=28.0
Q ss_pred ccccccCCCCCCcEE---cCCCccccHHHHHHHHHhCCCCCCCCCCC
Q psy3978 85 IKCPICLDLPRAPQM---TRCGHCFCWPCILHYLALSDKSWRKCPIC 128 (243)
Q Consensus 85 ~~CpICl~~~~~p~~---~~CgH~FC~~Ci~~~~~~~~~~~~~CP~C 128 (243)
..|--|+..+.+... ..|++.||.+|=. ++-.. ...||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fiHe~---Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FVHDS---LHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHH-TTTTT---SCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhH-HHHhh---ccCCcCC
Confidence 459899988865542 4799999999943 22222 2689988
No 102
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=50.23 E-value=4.3 Score=33.07 Aligned_cols=30 Identities=23% Similarity=0.517 Sum_probs=21.1
Q ss_pred CCccccccCCCCCCcEE----cCCCccccHHHHH
Q psy3978 83 EDIKCPICLDLPRAPQM----TRCGHCFCWPCIL 112 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~----~~CgH~FC~~Ci~ 112 (243)
+...|++|...|.--.. -.||++||..|..
T Consensus 160 ~~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 160 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp CCSBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CCCccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 34689999987753211 3699999988853
No 103
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=50.17 E-value=8.5 Score=28.02 Aligned_cols=50 Identities=18% Similarity=0.203 Sum_probs=36.5
Q ss_pred CCccccccCCCCCC---cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCC
Q psy3978 83 EDIKCPICLDLPRA---PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGD 136 (243)
Q Consensus 83 ~~~~CpICl~~~~~---p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~ 136 (243)
+=+.|..|...+.+ .....=|..||..|..+.+... ..|..|..+|....
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~~----~~C~~C~~~I~~~~ 83 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS----GAGGSGGHMGSGGD 83 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCCC----CSSSCSSCCSCCEE
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCCC----CccccCCCCcCchh
Confidence 34779999998863 3345678899999988766432 27999999887543
No 104
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=47.31 E-value=13 Score=33.19 Aligned_cols=48 Identities=21% Similarity=0.583 Sum_probs=31.4
Q ss_pred CCccccccCCCCCCcEE---cCCCccccHHHHHHHHHhC------CCCCCCCCCCCcc
Q psy3978 83 EDIKCPICLDLPRAPQM---TRCGHCFCWPCILHYLALS------DKSWRKCPICYEA 131 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~---~~CgH~FC~~Ci~~~~~~~------~~~~~~CP~Cr~~ 131 (243)
.+..|.+|-+--. -+. -.|...||..||.+.+... ......|-+|.-.
T Consensus 92 ~~~yCr~C~~Gg~-l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 92 YQSYCSICCSGET-LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SBCSCTTTCCCSS-CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CcccceEcCCCCe-EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 3567999987432 111 2799999999998877321 1122789999654
No 105
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=46.39 E-value=1.3 Score=38.48 Aligned_cols=46 Identities=26% Similarity=0.514 Sum_probs=34.1
Q ss_pred CCCccccccCCCCCCcEEc----CCC--ccccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 82 NEDIKCPICLDLPRAPQMT----RCG--HCFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~----~Cg--H~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
...-.||+|...+...++. .=| +.+|..|-.+|-... ..||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R----~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVR----IKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCT----TSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecC----cCCcCCCCC
Confidence 4567899999987766554 234 577889988886554 799999775
No 106
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=46.02 E-value=21 Score=27.38 Aligned_cols=48 Identities=17% Similarity=0.346 Sum_probs=35.9
Q ss_pred CCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
.+=+.|..|...+.......=|..||..|..+.+. ..|..|...|...
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~------~~C~~C~~~I~~~ 78 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG------TKCAACQLGIPPT 78 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHS------CBCTTTCCBCCTT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeeccccccccc------ccccccccccCCC
Confidence 45688999998776544456688999999876553 5799998877643
No 107
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=45.07 E-value=13 Score=26.92 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=35.3
Q ss_pred CCCccccccCCCCCC-cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRA-PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~-p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.+-+.|..|...+.. +....=|..||..|..+.+. ..|..|..+|..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~------~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHA------VVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSC------CBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcC------ccCcccCCcCCc
Confidence 355889999987765 34456788999999765432 689999998874
No 108
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=44.66 E-value=21 Score=26.66 Aligned_cols=47 Identities=28% Similarity=0.552 Sum_probs=29.4
Q ss_pred CccccccCCCCCCcEEcCCCccccHHHHHHH-----HHh--CCCCCCCCCCCCc
Q psy3978 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHY-----LAL--SDKSWRKCPICYE 130 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~-----~~~--~~~~~~~CP~Cr~ 130 (243)
+..|.||.+--.-.---.|-..||..||.+- +.. .......|+.|..
T Consensus 57 ~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 57 DEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp BSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 3459999874221111268899999999875 221 1223378999954
No 109
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.47 E-value=1.5 Score=28.48 Aligned_cols=34 Identities=24% Similarity=0.634 Sum_probs=22.3
Q ss_pred CccccccCCCCCCc-----EEc-C--CCccccHHHHHHHHHh
Q psy3978 84 DIKCPICLDLPRAP-----QMT-R--CGHCFCWPCILHYLAL 117 (243)
Q Consensus 84 ~~~CpICl~~~~~p-----~~~-~--CgH~FC~~Ci~~~~~~ 117 (243)
.-.||-|...+... ++- . |++.||+.|...|-..
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 35699988766532 222 2 8888888887776543
No 110
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=44.08 E-value=3.8 Score=26.39 Aligned_cols=48 Identities=19% Similarity=0.338 Sum_probs=30.1
Q ss_pred CCCccccccCCCCCCcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 82 NEDIKCPICLDLPRAPQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
..+..|.||.+.- .++ -.|...|+..|+..-+..-..+...||.|...
T Consensus 7 ~~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKDGG--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCCCS--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCCCC--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4556799998632 122 25878888888864333322333689999754
No 111
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=41.13 E-value=16 Score=24.18 Aligned_cols=47 Identities=26% Similarity=0.620 Sum_probs=29.8
Q ss_pred CCCccccccCCCCCCcEEcC-----CC-ccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 82 NEDIKCPICLDLPRAPQMTR-----CG-HCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~-----Cg-H~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
.+...| ||....... ++. |. .-|+..|+. +.....+...||.|...-
T Consensus 14 ~~~~~C-~C~~~~~g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCSCSS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCCCCC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 455678 899864443 443 55 578999986 333322347899997643
No 112
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=40.37 E-value=7.8 Score=26.63 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=18.0
Q ss_pred cccccCCCCC-----CcEEc-CCCccccHHHHHHH
Q psy3978 86 KCPICLDLPR-----APQMT-RCGHCFCWPCILHY 114 (243)
Q Consensus 86 ~CpICl~~~~-----~p~~~-~CgH~FC~~Ci~~~ 114 (243)
-||-|...+. .++.- .||+.||..|-..|
T Consensus 27 wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 27 WCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred ECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 3776665331 12333 49999998887655
No 113
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=40.06 E-value=1.7 Score=29.79 Aligned_cols=14 Identities=43% Similarity=1.130 Sum_probs=11.9
Q ss_pred CCCccccHHHHHHH
Q psy3978 101 RCGHCFCWPCILHY 114 (243)
Q Consensus 101 ~CgH~FC~~Ci~~~ 114 (243)
.||+.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999997665
No 114
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=39.41 E-value=14 Score=25.19 Aligned_cols=39 Identities=18% Similarity=0.387 Sum_probs=25.1
Q ss_pred CccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
...|+.|...+....+..-|..|+..| +.|-.|...+..
T Consensus 25 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 63 (90)
T 2dar_A 25 TPMCAHCNQVIRGPFLVALGKSWHPEE------------FNCAHCKNTMAY 63 (90)
T ss_dssp CCBBSSSCCBCCSCEEEETTEEECTTT------------CBCSSSCCBCSS
T ss_pred CCCCccCCCEecceEEEECCccccccC------------CccCCCCCCCCC
Confidence 345777777666555555666666665 677777766653
No 115
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=39.29 E-value=19 Score=27.96 Aligned_cols=48 Identities=17% Similarity=0.346 Sum_probs=34.2
Q ss_pred CCCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
.+-+.|..|...+.......=|..||..|..+.+. ..|..|...+...
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~------~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG------TKCAACQLGIPPT 132 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTTS------CCCTTTCCCCCSS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCccccccc------cccccCCCccCCC
Confidence 45688999988776543445678899998765332 5899998877643
No 116
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=38.30 E-value=3.3 Score=33.45 Aligned_cols=48 Identities=17% Similarity=0.378 Sum_probs=31.3
Q ss_pred CCccccccCCCCCCcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 83 EDIKCPICLDLPRAPQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
.+..|.+|...-. .+ -.|...|+..|+..-+..-..+...||.|+..-
T Consensus 6 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4456999986421 22 258889999998654443333447899998644
No 117
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.28 E-value=16 Score=25.57 Aligned_cols=47 Identities=26% Similarity=0.636 Sum_probs=29.3
Q ss_pred CCCccccccCCCCCCcEEcC-----CC-ccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 82 NEDIKCPICLDLPRAPQMTR-----CG-HCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~-----Cg-H~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
.+...| ||...... .++. |. .-|+..|+- +.........||.|+...
T Consensus 34 ~e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 455678 99985443 3443 54 468888886 333222347899997643
No 118
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=38.18 E-value=15 Score=23.17 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=23.4
Q ss_pred ccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 85 IKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 85 ~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..|+.|...+....+..-|..|+..| +.|..|..++..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 43 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEH------------FVCAKCEKPFLG 43 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTT------------CBCTTTCCBCSS
T ss_pred CCCcccCCEecceEEEECccccccCc------------CEECCCCCCCCC
Confidence 35777777555555555566666555 567777766653
No 119
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.97 E-value=18 Score=23.91 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=28.6
Q ss_pred CCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
....|.-|...+...++..-+..|+..| +.|-.|...+.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPEC------------YVCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTT------------TSCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCc------------CeeCCCCCCCC
Confidence 4457999998777666666777777766 67888877664
No 120
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.96 E-value=20 Score=22.82 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=19.0
Q ss_pred cccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 86 KCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 86 ~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.|..|...+....+..-+..|+..| +.|-.|..++.
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 42 (70)
T 2d8z_A 7 GCVQCKKPITTGGVTYREQPWHKEC------------FVCTACRKQLS 42 (70)
T ss_dssp BCSSSCCBCCSSEEESSSSEEETTT------------SBCSSSCCBCT
T ss_pred CCcccCCeeccceEEECccccCCCC------------CccCCCCCcCC
Confidence 4666666554444444455555444 45666655543
No 121
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.75 E-value=18 Score=23.07 Aligned_cols=25 Identities=12% Similarity=0.313 Sum_probs=11.2
Q ss_pred cccccCCCCCCcEEcCCCccccHHH
Q psy3978 86 KCPICLDLPRAPQMTRCGHCFCWPC 110 (243)
Q Consensus 86 ~CpICl~~~~~p~~~~CgH~FC~~C 110 (243)
.|..|...+...++..-+..|+..|
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~C 31 (70)
T 2d8x_A 7 GCHQCGEFIIGRVIKAMNNSWHPEC 31 (70)
T ss_dssp BCSSSCCBCCSCCEEETTEEECTTT
T ss_pred cCccCCCEecceEEEECcccccccC
Confidence 4555555444333333344444444
No 122
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=36.72 E-value=9.6 Score=26.61 Aligned_cols=49 Identities=20% Similarity=0.478 Sum_probs=32.4
Q ss_pred CCCCccccccCCCCCCcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 81 GNEDIKCPICLDLPRAPQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
...+..|.+|...-. .+ -.|.-.|...|+..-+..-..+...||.|...
T Consensus 22 d~n~~~C~vC~~~g~--LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKPGD--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSSSC--CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCCCC--EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345667999997421 22 26888899999865554433344789999754
No 123
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.29 E-value=20 Score=22.95 Aligned_cols=37 Identities=16% Similarity=0.384 Sum_probs=21.3
Q ss_pred cccccCCCCC--CcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 86 KCPICLDLPR--APQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 86 ~CpICl~~~~--~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.|.-|...+. +.++..-|..|+..| +.|-.|..++..
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWHEHC------------FLCSGCEQPLGS 45 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEETTT------------CBCTTTCCBTTT
T ss_pred CCccCCCccccCccEEEECccccCccc------------CeECCCCCcCCC
Confidence 4666666555 344445555555555 566666665543
No 124
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=35.44 E-value=24 Score=25.61 Aligned_cols=49 Identities=14% Similarity=0.325 Sum_probs=36.1
Q ss_pred CCCccccccCCCCC---CcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPR---APQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~---~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.+=+.|..|...+. .+....=|..||..|..+.+... ..|..|..++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~~----~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQD----GLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCCC----EECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCCc----cChhhcCCccCc
Confidence 45688999998875 34556678899999987765321 279999998864
No 125
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=35.43 E-value=6.9 Score=27.73 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=28.4
Q ss_pred CCccccccCCCCCCcEEc---CCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 83 EDIKCPICLDLPRAPQMT---RCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~---~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
+...| ||........++ .|..-|+..|+..-...-. ....||.|+.
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p-~~w~C~~C~~ 75 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIP-DTYLCERCQP 75 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCC-SSBCCTTTSS
T ss_pred CCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCC-CCEECCCCcC
Confidence 44568 898765544444 5888888888753222111 2378999964
No 126
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=35.10 E-value=6.7 Score=31.24 Aligned_cols=48 Identities=21% Similarity=0.426 Sum_probs=29.4
Q ss_pred ccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 85 IKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 85 ~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
..|.+|.+.-.--.--.|...|+..|+..-+.....+...||.|...-
T Consensus 3 ~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 3 TICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 458899864221111257788889998654443333447899997653
No 127
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=34.88 E-value=0.87 Score=32.55 Aligned_cols=40 Identities=25% Similarity=0.606 Sum_probs=25.5
Q ss_pred ccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 85 IKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 85 ~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
..||+|...+.. .=++.+|..|-..+... ..||.|..++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~~-----a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEMK-----ALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEEE-----EECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhhcc-----ccCcchhhHHH
Confidence 679999986542 11344477775433322 58999988764
No 128
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=34.44 E-value=29 Score=23.38 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=29.2
Q ss_pred CCccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
....|.-|...+...++..-+..|+..| +.|-.|...+...
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~~ 64 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPEC------------FVCADCNLNLKQK 64 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTT------------CCCSSSCCCTTTS
T ss_pred cCCCcccCCCEecccEEEECCceECccC------------CEecCCCCCCCCC
Confidence 4456888888776655556677777766 7888888877643
No 129
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=32.48 E-value=3.5 Score=26.96 Aligned_cols=48 Identities=21% Similarity=0.489 Sum_probs=29.5
Q ss_pred CCCccccccCCCCCCcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 82 NEDIKCPICLDLPRAPQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
..+..|.||.+.- .++ -.|...|+..|+..-+..-..+...||.|...
T Consensus 6 ~~~~~C~vC~~~g--~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDGG--ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCCS--SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCCC--CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 4566799998742 122 26888888888764333222233678888654
No 130
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.07 E-value=19 Score=23.84 Aligned_cols=38 Identities=18% Similarity=0.467 Sum_probs=28.0
Q ss_pred cccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccCC
Q psy3978 86 KCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135 (243)
Q Consensus 86 ~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~ 135 (243)
.|+.|...+...++..-+..|+..| +.|-.|..++...
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~~~ 54 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDC------------FVCAVCRLPFPPG 54 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTT------------SSCSSSCCCCCSS
T ss_pred cCccccCEeccceEEECCceeCccC------------CccccCCCCCCCC
Confidence 6888988776655556677777766 7888898877643
No 131
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.90 E-value=22 Score=23.11 Aligned_cols=36 Identities=14% Similarity=0.317 Sum_probs=22.1
Q ss_pred cccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 86 KCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 86 ~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.|+-|...+...++..-+..|+..| +.|-.|..++.
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~wH~~C------------F~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHYHPSC------------ALCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCBCTTT------------SCCSSSCCCCC
T ss_pred CcccCCCEecCeeEEeCCCCCCCCc------------CEeCCCCCCCC
Confidence 4777776665544445555666555 56777766654
No 132
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.89 E-value=22 Score=23.17 Aligned_cols=39 Identities=26% Similarity=0.485 Sum_probs=26.0
Q ss_pred CccccccCCCCC-CcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 84 DIKCPICLDLPR-APQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 84 ~~~CpICl~~~~-~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
...|+.|...+. ...+..-+..|+..| +.|..|..++..
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFC------------LKCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTT------------CBCSSSCCBCCT
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCC------------CCCCCCCCccCC
Confidence 346888888665 444445566666666 678888777764
No 133
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.83 E-value=19 Score=25.94 Aligned_cols=29 Identities=28% Similarity=0.565 Sum_probs=17.7
Q ss_pred CCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccc
Q psy3978 95 RAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAV 132 (243)
Q Consensus 95 ~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~ 132 (243)
..+.-..||+.|+ . .......||.|+..-
T Consensus 66 ~p~~C~~CG~~F~--------~-~~~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 66 KPAQCRKCGFVFK--------A-EINIPSRCPKCKSEW 94 (105)
T ss_dssp CCCBBTTTCCBCC--------C-CSSCCSSCSSSCCCC
T ss_pred ECcChhhCcCeec--------c-cCCCCCCCcCCCCCc
Confidence 3444567999992 1 111226899998753
No 134
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=31.62 E-value=33 Score=22.89 Aligned_cols=31 Identities=23% Similarity=0.655 Sum_probs=23.3
Q ss_pred CCccccccCCCC-CCc--EEcCCCccccHHHHHH
Q psy3978 83 EDIKCPICLDLP-RAP--QMTRCGHCFCWPCILH 113 (243)
Q Consensus 83 ~~~~CpICl~~~-~~p--~~~~CgH~FC~~Ci~~ 113 (243)
.+..|.+|.+.. ..+ .-+.|.-+||..|+..
T Consensus 29 ~~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~ 62 (78)
T 2ffw_A 29 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA 62 (78)
T ss_dssp CCCBCSSCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred CCccCCcCCCCCCCCCeeEccCccchhhhhhhHh
Confidence 457799998743 333 3378999999999975
No 135
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.50 E-value=35 Score=21.77 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=22.7
Q ss_pred ccccccCCCCCC----cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 85 IKCPICLDLPRA----PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 85 ~~CpICl~~~~~----p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
..|.-|...+.. .++..-+..|+..| +.|-.|...+.
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~C------------F~C~~C~~~L~ 46 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDC------------FNCKKCSLSLV 46 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTT------------CBCSSSCCBCT
T ss_pred CCCcCCCccccCCCCcceEEECCcccCccc------------CEeccCCCcCC
Confidence 457777776553 44445566666555 56777776664
No 136
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=30.69 E-value=12 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.448 Sum_probs=21.6
Q ss_pred CCCccccccCCCCC---Cc-EE-cCCCccccHHHHH
Q psy3978 82 NEDIKCPICLDLPR---AP-QM-TRCGHCFCWPCIL 112 (243)
Q Consensus 82 ~~~~~CpICl~~~~---~p-~~-~~CgH~FC~~Ci~ 112 (243)
.++..|.+|...+. +. .. ..|.|.+|..|-.
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~ 88 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGV 88 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccCC
Confidence 46778999999762 22 22 4788888887743
No 137
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=30.49 E-value=16 Score=35.62 Aligned_cols=53 Identities=26% Similarity=0.493 Sum_probs=38.0
Q ss_pred CCCCccccccCCCCCCc--------EE--cCCCccc--------------------cHHHHHHHHHhCCCC----CCCCC
Q psy3978 81 GNEDIKCPICLDLPRAP--------QM--TRCGHCF--------------------CWPCILHYLALSDKS----WRKCP 126 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p--------~~--~~CgH~F--------------------C~~Ci~~~~~~~~~~----~~~CP 126 (243)
..+.-.|+-|+..+.+| -+ |.||..| |..|-.+|-.-.++. ...||
T Consensus 103 ~pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~ 182 (772)
T 4g9i_A 103 PPDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACP 182 (772)
T ss_dssp CCCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCc
Confidence 56777899999876665 12 5688777 999999987543321 25899
Q ss_pred CCCcccc
Q psy3978 127 ICYEAVH 133 (243)
Q Consensus 127 ~Cr~~~~ 133 (243)
.|.=.+.
T Consensus 183 ~CGP~l~ 189 (772)
T 4g9i_A 183 VCGPSYR 189 (772)
T ss_dssp TTSCCEE
T ss_pred cCCceEE
Confidence 9986653
No 138
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.12 E-value=2.2 Score=26.94 Aligned_cols=47 Identities=19% Similarity=0.461 Sum_probs=27.7
Q ss_pred CCCCccccccCCCCCCcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQM--TRCGHCFCWPCILHYLALSDKSWRKCPICY 129 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr 129 (243)
...+..|.||...- .++ -.|...|+..|+..-+.....+...||.|.
T Consensus 6 ~~~~~~C~vC~~~g--~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 6 SGHEDFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp CSSCCSCSSSCCSS--CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCCccCCCCC--eEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 34566799998742 222 267778888887643332222235677774
No 139
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.56 E-value=27 Score=22.73 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=27.5
Q ss_pred ccccccCCCCCC----cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 85 IKCPICLDLPRA----PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 85 ~~CpICl~~~~~----p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
..|+.|...+.. .++..-+..|+..| +.|-.|...+.
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~C------------F~C~~C~~~L~ 46 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSEC------------FNCGKCSVSLV 46 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGG------------CBCTTTCCBCS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCccc------------CChhhCCCcCC
Confidence 358889887764 55556677777777 78889988775
No 140
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.47 E-value=22 Score=23.50 Aligned_cols=39 Identities=10% Similarity=0.190 Sum_probs=24.7
Q ss_pred CccccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
...|+-|...+....+..-|..|+..| +.|-.|..++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~~ 53 (79)
T 2cor_A 15 KYICQKCHAIIDEQPLIFKNDPYHPDH------------FNCANCGKELTA 53 (79)
T ss_dssp CCBCTTTCCBCCSCCCCCSSSCCCTTT------------SBCSSSCCBCCT
T ss_pred CCCCccCCCEecceEEEECcceeCCCC------------CEeCCCCCccCC
Confidence 345777777666555555565666555 677777776654
No 141
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=29.32 E-value=28 Score=21.09 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=24.1
Q ss_pred ccceeeeeeecCCCeeEeeccCCCCCCCC
Q psy3978 152 EEVTFQLMKRERGSTVVSPVAQWDFHPTD 180 (243)
Q Consensus 152 ~~~~l~l~~r~~~~~~~~~~s~~~~~~~~ 180 (243)
+...+++++.+++..+|+.|.....|..+
T Consensus 14 H~e~l~lfC~~d~~~iC~~C~~~~~H~~H 42 (53)
T 2did_A 14 HHEALSLFCYEDQEAVCLICAISHTHRAH 42 (53)
T ss_dssp TCCBCCEEESSSCSEECHHHHTSSTTTTS
T ss_pred hCCeeeEEeCCCCeEEeccccCCCCCCCC
Confidence 34568899999999999999988888754
No 142
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.46 E-value=21 Score=23.57 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=10.8
Q ss_pred cccccCCCCCCcEEcCCCccccHHH
Q psy3978 86 KCPICLDLPRAPQMTRCGHCFCWPC 110 (243)
Q Consensus 86 ~CpICl~~~~~p~~~~CgH~FC~~C 110 (243)
.|..|...+.+.++..-+..|+..|
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~C 41 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKYHPEC 41 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCBCTTS
T ss_pred cCccCCCCcCceEEEECCceecccc
Confidence 3555555444333333344444433
No 143
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.35 E-value=34 Score=22.42 Aligned_cols=38 Identities=18% Similarity=0.403 Sum_probs=23.1
Q ss_pred ccccccCCCCC--CcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 85 IKCPICLDLPR--APQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 85 ~~CpICl~~~~--~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..|+.|...+. +.++..-+..|+..| +.|-.|..++..
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 55 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDC------------FTCSNCKQVIGT 55 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTT------------CCCSSSCCCCTT
T ss_pred CcCccCCcccccCceEEEECcccccccc------------CchhhCCCccCC
Confidence 35777777655 344545566666555 667777666653
No 144
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=27.78 E-value=19 Score=24.82 Aligned_cols=47 Identities=21% Similarity=0.462 Sum_probs=33.0
Q ss_pred CCCccccccCCCCCCc-EEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRAP-QMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p-~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.+=+.|..|...+... ....=|..||..|..+.+ . ..|..|..+|..
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~--~----~~C~~C~~~I~~ 78 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTRED--S----PKCKGCFKAIVA 78 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC--C----CBCSSSCCBCCS
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhhhc--C----CccccCCCcccc
Confidence 4557899998877543 334568899999864322 1 689999888764
No 145
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.63 E-value=28 Score=22.10 Aligned_cols=29 Identities=14% Similarity=0.346 Sum_probs=12.0
Q ss_pred ccccccCCCCCCc-EEcCCCccccHHHHHH
Q psy3978 85 IKCPICLDLPRAP-QMTRCGHCFCWPCILH 113 (243)
Q Consensus 85 ~~CpICl~~~~~p-~~~~CgH~FC~~Ci~~ 113 (243)
+.|..|...+... ....=|..||..|..+
T Consensus 32 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~ 61 (69)
T 2cur_A 32 FVCVTCSKKLAGQRFTAVEDQYYCVDCYKN 61 (69)
T ss_dssp TBCTTTCCBCTTSCEEECSSCEEEHHHHHH
T ss_pred CEECCCCCCCCCCccEeECCEEECHHHhHH
Confidence 4444444443321 2223344455555443
No 146
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=27.39 E-value=33 Score=19.52 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=23.1
Q ss_pred cceeeeeeecCCCeeEeeccCCCCCCCC
Q psy3978 153 EVTFQLMKRERGSTVVSPVAQWDFHPTD 180 (243)
Q Consensus 153 ~~~l~l~~r~~~~~~~~~~s~~~~~~~~ 180 (243)
...+.+++.+++..+++.|....+|..+
T Consensus 10 ~e~l~lfC~~d~~~iC~~C~~~~~H~~H 37 (42)
T 1fre_A 10 DERLKLYCKDDGTLSCVICRDSLKHASH 37 (42)
T ss_dssp CSSCCCCCCSSSSSSCCTTSSCSSCTTC
T ss_pred CCeeeEEeCCCCeEEeccCCCCCCCCCC
Confidence 3567899999999999999987777644
No 147
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=26.98 E-value=4.9 Score=25.65 Aligned_cols=46 Identities=20% Similarity=0.485 Sum_probs=27.3
Q ss_pred CCccccccCCCCCCcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 83 EDIKCPICLDLPRAPQM--TRCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 83 ~~~~CpICl~~~~~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
.+..|.||...- .++ -.|...|+..|+..-+.....+...||.|..
T Consensus 4 ~~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~ 51 (60)
T 2puy_A 4 HEDFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 51 (60)
T ss_dssp CCSSCTTTCCCS--SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHH
T ss_pred CCCCCcCCCCCC--cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccC
Confidence 455688888742 222 2677888888876433322223367888754
No 148
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.92 E-value=33 Score=21.85 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=19.4
Q ss_pred cccccCCCCCC--cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 86 KCPICLDLPRA--PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 86 ~CpICl~~~~~--p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.|+.|...+.. .++..-|..|+..| +.|-.|...+.
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~ 44 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETC------------FICHRCQQPIG 44 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTT------------TCCSSSCCCCC
T ss_pred CCccCCCcccCCceEEEECcCeecccC------------CcccccCCccC
Confidence 46666665552 34444455555544 55666665554
No 149
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=26.91 E-value=19 Score=34.38 Aligned_cols=52 Identities=31% Similarity=0.626 Sum_probs=37.1
Q ss_pred CCCCccccccCCCCCCcE--------E--cCCCccc--------------------cHHHHHHHHHhCCC----CCCCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQ--------M--TRCGHCF--------------------CWPCILHYLALSDK----SWRKCP 126 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~--------~--~~CgH~F--------------------C~~Ci~~~~~~~~~----~~~~CP 126 (243)
..+.-.|+-|+..+.+|. + |.||..| |..|..+|-.-.++ ....||
T Consensus 14 ~pD~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp 93 (657)
T 3ttc_A 14 VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACP 93 (657)
T ss_dssp CCCBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCT
T ss_pred CCchhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCc
Confidence 567778999998666541 2 5688777 99999998764332 125899
Q ss_pred CCCccc
Q psy3978 127 ICYEAV 132 (243)
Q Consensus 127 ~Cr~~~ 132 (243)
.|.=.+
T Consensus 94 ~CGP~l 99 (657)
T 3ttc_A 94 ECGPYL 99 (657)
T ss_dssp TTSCCE
T ss_pred ccCccc
Confidence 997666
No 150
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=26.45 E-value=21 Score=27.50 Aligned_cols=45 Identities=18% Similarity=0.394 Sum_probs=28.6
Q ss_pred CCccccccCCCC---CC-cEE-cCCCccccHHHHHHHHHhCCCCCCCCCCCCc
Q psy3978 83 EDIKCPICLDLP---RA-PQM-TRCGHCFCWPCILHYLALSDKSWRKCPICYE 130 (243)
Q Consensus 83 ~~~~CpICl~~~---~~-p~~-~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~ 130 (243)
++..|.+|...| .+ ... ..|.|.+|..|-. |.. ......|-+|..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~--~~~~W~C~vC~k 116 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHP--EEQGWLCDPCHL 116 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCS--SSSSCEEHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhccccc-ccC--CCCcEeeHHHHH
Confidence 577899999964 22 222 5799999999962 221 122356777754
No 151
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.02 E-value=22 Score=23.45 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=10.5
Q ss_pred cccccCCCCCCcEEcCCCccccHHH
Q psy3978 86 KCPICLDLPRAPQMTRCGHCFCWPC 110 (243)
Q Consensus 86 ~CpICl~~~~~p~~~~CgH~FC~~C 110 (243)
.|+-|...+.+.++..-+..|+..|
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~C 41 (81)
T 2dlo_A 17 KCATCSQPILDRILRAMGKAYHPGC 41 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTT
T ss_pred ccccCCCeecceeEEECCccccHHh
Confidence 3555555444333333344444433
No 152
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=25.91 E-value=17 Score=28.47 Aligned_cols=49 Identities=18% Similarity=0.419 Sum_probs=35.3
Q ss_pred CCCccccccCCCCCC---cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRA---PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~---p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
.+=+.|..|...+.. .....=|..||..|..+.+... ..|..|...+..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~~----~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGNS----GACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSCC----EECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCccccccccccccccC----CccccCCCcccc
Confidence 355789999887753 4555668899999987765321 169999998864
No 153
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.90 E-value=33 Score=22.42 Aligned_cols=36 Identities=17% Similarity=0.368 Sum_probs=18.3
Q ss_pred cccccCCCCCCcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCcccc
Q psy3978 86 KCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVH 133 (243)
Q Consensus 86 ~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~ 133 (243)
.|+.|...+....+..-+..|+..| +.|-.|..++.
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~C------------F~C~~C~~~L~ 52 (80)
T 2cuq_A 17 RCARCSKTLTQGGVTYRDQPWHREC------------LVCTGCQTPLA 52 (80)
T ss_dssp CCTTTCCCCCSCCEESSSSEECTTT------------CBCSSSCCBCT
T ss_pred cCCCCCCEecCcEEEECCchhhhhh------------CCcccCCCcCC
Confidence 4666665544444444444444444 45666655553
No 154
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=24.90 E-value=1e+02 Score=17.84 Aligned_cols=42 Identities=10% Similarity=0.070 Sum_probs=24.5
Q ss_pred CCCccccccCCCCCCcEEcCCCccccHHHHHHHHH-hC-CCCCCCCCCCCccccC
Q psy3978 82 NEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLA-LS-DKSWRKCPICYEAVHL 134 (243)
Q Consensus 82 ~~~~~CpICl~~~~~p~~~~CgH~FC~~Ci~~~~~-~~-~~~~~~CP~Cr~~~~~ 134 (243)
+..+.|++|...|.. ..-|..++. .. ......|+.|...+..
T Consensus 10 ~k~~~C~~C~k~f~~-----------~~~L~~H~~~~H~~~k~~~C~~C~k~F~~ 53 (54)
T 2eps_A 10 GKPYICQSCGKGFSR-----------PDHLNGHIKQVHTSERPHKCQVWVSGPSS 53 (54)
T ss_dssp SCCEECSSSCCEESS-----------HHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred CCCeECCCCCcccCC-----------HHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence 345678877665543 334555543 22 2233789999887653
No 155
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.74 E-value=35 Score=21.36 Aligned_cols=29 Identities=14% Similarity=0.112 Sum_probs=24.3
Q ss_pred ccceeeeeeecCCCeeEeeccCCCCCCCC
Q psy3978 152 EEVTFQLMKRERGSTVVSPVAQWDFHPTD 180 (243)
Q Consensus 152 ~~~~l~l~~r~~~~~~~~~~s~~~~~~~~ 180 (243)
+...+++++++++..+|+.|.....|..+
T Consensus 20 H~e~L~lfC~~d~~~iC~~C~~s~eH~~H 48 (59)
T 2yrg_A 20 HGEKLLLFCQEDGKVICWLCERSQEHRGH 48 (59)
T ss_dssp TCCBCCEEETTTCSEECHHHHTSTTTTTC
T ss_pred hCceeeeecCCCCcEEecccCCCCcCCCC
Confidence 34568899999999999999988888754
No 156
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=24.22 E-value=1.2e+02 Score=21.54 Aligned_cols=47 Identities=17% Similarity=0.323 Sum_probs=27.1
Q ss_pred CCccccccCCCC-------CCcEE--cCCCccccHHHHHH---HHHhCCCCCCCCCCCC
Q psy3978 83 EDIKCPICLDLP-------RAPQM--TRCGHCFCWPCILH---YLALSDKSWRKCPICY 129 (243)
Q Consensus 83 ~~~~CpICl~~~-------~~p~~--~~CgH~FC~~Ci~~---~~~~~~~~~~~CP~Cr 129 (243)
....|.+|+..- .+..+ ..|+..|+..|+.. ....-......||.|+
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred cCccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 345699998642 12333 37999999999841 1111011126788885
No 157
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.15 E-value=30 Score=22.58 Aligned_cols=25 Identities=16% Similarity=0.252 Sum_probs=10.9
Q ss_pred cccccCCCCCCcEEcCCCccccHHH
Q psy3978 86 KCPICLDLPRAPQMTRCGHCFCWPC 110 (243)
Q Consensus 86 ~CpICl~~~~~p~~~~CgH~FC~~C 110 (243)
.|..|...+....+..-+..|+..|
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~C 41 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMDTVWHPEC 41 (80)
T ss_dssp BCTTTCCBCCSSCEEETTEEECTTT
T ss_pred ccccCCCeecceeEEECCCeEecCc
Confidence 3555555444333333344444443
No 158
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=23.81 E-value=17 Score=25.99 Aligned_cols=49 Identities=22% Similarity=0.521 Sum_probs=30.4
Q ss_pred CCCCccccccCCCCC-CcEE--cCCCccccHHHHHHHHHhCCCCCCCCCCCC
Q psy3978 81 GNEDIKCPICLDLPR-APQM--TRCGHCFCWPCILHYLALSDKSWRKCPICY 129 (243)
Q Consensus 81 ~~~~~~CpICl~~~~-~p~~--~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr 129 (243)
..++..|.||.+.-. ...+ ..|+..|+..|+...+..-......||.|.
T Consensus 4 ~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 4 GSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 346678999987543 2222 479999999998654332111226777764
No 159
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=23.39 E-value=18 Score=25.00 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=34.0
Q ss_pred CCCCccccccCCCC--CCcEEc---CCCccccHHHHHHHHHhCCCCCCCCCCCCccccCCC
Q psy3978 81 GNEDIKCPICLDLP--RAPQMT---RCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGD 136 (243)
Q Consensus 81 ~~~~~~CpICl~~~--~~p~~~---~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~~~ 136 (243)
..++..|.||...- ....++ .|.-.|...|+..-. -..+...||.|........
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~--vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY--IPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS--CCSSCCCCHHHHHHTTSCC
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc--cCCCceECccccCccchhh
Confidence 45667899999753 222333 688899999986422 1222378999976554443
No 160
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=23.12 E-value=43 Score=21.61 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=26.0
Q ss_pred ccccccCCCCCC-----cEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 85 IKCPICLDLPRA-----PQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 85 ~~CpICl~~~~~-----p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
..|+-|...+.. .++..=+..|+..| +.|-.|..++..
T Consensus 16 ~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 58 (77)
T 2egq_A 16 KKCAGCKNPITGFGKGSSVVAYEGQSWHDYC------------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCSSSCCCCCCCSSCCCEEEETTEEEETTT------------CBCSSSCCBCTT
T ss_pred ccCcccCCcccCCCCCceeEEECcceeCccc------------CEehhcCCCCCC
Confidence 458888887664 44555566666666 678888877754
No 161
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=23.03 E-value=35 Score=24.55 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=19.1
Q ss_pred CccccccCCCCCCcEEcCCCccccH
Q psy3978 84 DIKCPICLDLPRAPQMTRCGHCFCW 108 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~~~CgH~FC~ 108 (243)
...|..|...-..-+-+.|||++|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 4569999876554556899999994
No 162
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=22.84 E-value=33 Score=22.22 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=24.9
Q ss_pred CCCccccccCCCCCC-cEEcCCCccccH-HHHHHHHHhCCCCCCCCCCCCcc
Q psy3978 82 NEDIKCPICLDLPRA-PQMTRCGHCFCW-PCILHYLALSDKSWRKCPICYEA 131 (243)
Q Consensus 82 ~~~~~CpICl~~~~~-p~~~~CgH~FC~-~Ci~~~~~~~~~~~~~CP~Cr~~ 131 (243)
.+=+.|..|...+.. +....=|..||. .|..+.+. ..|..|...
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~------~~C~~C~~~ 70 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFG------PKGFGRGGA 70 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSS------CCCSSCCCS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHhC------ccCCCcCCc
Confidence 345677777766554 333445667777 47654322 456666543
No 163
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.43 E-value=9.9 Score=25.71 Aligned_cols=45 Identities=20% Similarity=0.485 Sum_probs=28.2
Q ss_pred cccccCCCCCC-cEEc--CCCccccHHHHHHHHHhCCCC-CCCCCCCCc
Q psy3978 86 KCPICLDLPRA-PQMT--RCGHCFCWPCILHYLALSDKS-WRKCPICYE 130 (243)
Q Consensus 86 ~CpICl~~~~~-p~~~--~CgH~FC~~Ci~~~~~~~~~~-~~~CP~Cr~ 130 (243)
.|.||...-.. .+++ .|...|+..|+..-+..-..+ ...||.|..
T Consensus 28 ~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 68889864322 2332 688889999986444333223 367999853
No 164
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=22.29 E-value=22 Score=34.49 Aligned_cols=53 Identities=26% Similarity=0.506 Sum_probs=36.3
Q ss_pred CCCCccccccCCCCCCcE--------E--cCCCccc--------------------cHHHHHHHHHhCCC----CCCCCC
Q psy3978 81 GNEDIKCPICLDLPRAPQ--------M--TRCGHCF--------------------CWPCILHYLALSDK----SWRKCP 126 (243)
Q Consensus 81 ~~~~~~CpICl~~~~~p~--------~--~~CgH~F--------------------C~~Ci~~~~~~~~~----~~~~CP 126 (243)
..+.-.|+-|+..+.+|. + |.||..| |..|..+|-.-.++ ....||
T Consensus 108 ~pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~ 187 (761)
T 3vth_A 108 SPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACF 187 (761)
T ss_dssp CCCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCT
T ss_pred CCCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCC
Confidence 466678999998766652 2 5677655 99999988654322 125799
Q ss_pred CCCcccc
Q psy3978 127 ICYEAVH 133 (243)
Q Consensus 127 ~Cr~~~~ 133 (243)
.|.-.+.
T Consensus 188 ~CGP~l~ 194 (761)
T 3vth_A 188 DCGPSLS 194 (761)
T ss_dssp TTSCCEE
T ss_pred ccCCeeE
Confidence 9976653
No 165
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=22.01 E-value=1e+02 Score=20.37 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=30.0
Q ss_pred CCCccccccCCCCC-CcEEc---CCCccccHHHHHHHHHhC-CCCCCCCCCCCcccc
Q psy3978 82 NEDIKCPICLDLPR-APQMT---RCGHCFCWPCILHYLALS-DKSWRKCPICYEAVH 133 (243)
Q Consensus 82 ~~~~~CpICl~~~~-~p~~~---~CgH~FC~~Ci~~~~~~~-~~~~~~CP~Cr~~~~ 133 (243)
.+...| ||..... ...++ .|..=|+..|+.-..... ......||.|+....
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 345567 8988653 22333 577788999984221111 112389999986543
No 166
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.96 E-value=44 Score=21.49 Aligned_cols=39 Identities=15% Similarity=0.363 Sum_probs=24.2
Q ss_pred CccccccCCCCC--CcEEcCCCccccHHHHHHHHHhCCCCCCCCCCCCccccC
Q psy3978 84 DIKCPICLDLPR--APQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134 (243)
Q Consensus 84 ~~~CpICl~~~~--~p~~~~CgH~FC~~Ci~~~~~~~~~~~~~CP~Cr~~~~~ 134 (243)
...|+-|...+. +.++..-|..|+..| +.|-.|..++..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~C------------F~C~~C~~~L~~ 51 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQC------------FVCAQCFQQFPE 51 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTT------------CCCTTTCCCCGG
T ss_pred CCCchhcCCccCCCceEEEeCccEecccc------------CeECCCCCCCCC
Confidence 456888887653 344445566666655 677777776654
No 167
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.86 E-value=37 Score=26.31 Aligned_cols=45 Identities=22% Similarity=0.595 Sum_probs=29.6
Q ss_pred CccccccCCCCCCcEE----cCCCccccHHHHHHHHHhC------CCCCCCCCCCCc
Q psy3978 84 DIKCPICLDLPRAPQM----TRCGHCFCWPCILHYLALS------DKSWRKCPICYE 130 (243)
Q Consensus 84 ~~~CpICl~~~~~p~~----~~CgH~FC~~Ci~~~~~~~------~~~~~~CP~Cr~ 130 (243)
+..|.||-+-- -++ ..|...||..||...+... ......|-+|.-
T Consensus 79 ~~yC~wC~~Gg--~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 79 QSYCTICCGGR--EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp BSSCTTTSCCS--EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred cceeeEecCCC--eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 45799998732 122 1588999999998776432 122367988854
No 168
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=21.28 E-value=6.1 Score=25.53 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=30.7
Q ss_pred CCCccccccCCCCC---CcEEc--CCCccccHHHHHHHHHh---CCCCCCCCCCCCcc
Q psy3978 82 NEDIKCPICLDLPR---APQMT--RCGHCFCWPCILHYLAL---SDKSWRKCPICYEA 131 (243)
Q Consensus 82 ~~~~~CpICl~~~~---~p~~~--~CgH~FC~~Ci~~~~~~---~~~~~~~CP~Cr~~ 131 (243)
.++..|.||..... ..+++ .|...|+..|+..-+.. .......||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 45677999997532 23332 68888999988643221 01222679888654
No 169
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=21.18 E-value=9.8 Score=25.77 Aligned_cols=45 Identities=20% Similarity=0.400 Sum_probs=26.7
Q ss_pred cccccCCCCCCcEEc---CCCccccHHHHHHHHHhCCCCC-CCCCCCCc
Q psy3978 86 KCPICLDLPRAPQMT---RCGHCFCWPCILHYLALSDKSW-RKCPICYE 130 (243)
Q Consensus 86 ~CpICl~~~~~p~~~---~CgH~FC~~Ci~~~~~~~~~~~-~~CP~Cr~ 130 (243)
.|.||...-....++ .|...|+..|+..-+..-..+. ..||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466666543323333 6888899999875444433333 67999864
No 170
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=21.05 E-value=12 Score=24.67 Aligned_cols=45 Identities=20% Similarity=0.407 Sum_probs=27.1
Q ss_pred cccccCCCCCCcEEc---CCCccccHHHHHHHHHhCCCC-CCCCCCCCc
Q psy3978 86 KCPICLDLPRAPQMT---RCGHCFCWPCILHYLALSDKS-WRKCPICYE 130 (243)
Q Consensus 86 ~CpICl~~~~~p~~~---~CgH~FC~~Ci~~~~~~~~~~-~~~CP~Cr~ 130 (243)
.|.||...-....++ .|...|+..|+..-+..-..+ ...||.|..
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 455777533223333 688899999986444433223 468999964
Done!