RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3978
(243 letters)
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 60.9 bits (147), Expect = 7e-13
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 69 VKWEYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
++ E +Q + + ++CPICL+L + P T+C H FC C+L L +CP+C
Sbjct: 6 LRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPS-QCPLC 64
Query: 129 YEAVHLGDLK 138
+ L+
Sbjct: 65 KNDITKRSLQ 74
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 57.6 bits (139), Expect = 7e-12
Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKS 139
+ I C IC + P T C H FC CIL L CP C DL+S
Sbjct: 22 KSISCQICEHILADPVETSCKHLFCRICILRCL---KVMGSYCPSCRYPCFPTDLES 75
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 53.8 bits (129), Expect = 2e-10
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 65 PDQLVKW--EYIQQIRGFGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSW 122
P +K E + G+ C IC + + ++ CGH C C+ + +
Sbjct: 2 PQDHIKVTQEQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQ---ESEG 58
Query: 123 RKCPICYEAVH 133
+ CP C +
Sbjct: 59 QGCPFCRCEIK 69
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 51.8 bits (124), Expect = 5e-10
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLG 135
+ ++C C + P++ C H C C+ + S +CPIC LG
Sbjct: 5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCL-------EASGMQCPICQAPWPLG 50
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 48.2 bits (114), Expect = 3e-08
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 64 DPDQLVKWEYIQQIRGFGNEDIKCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSW 122
+PD W + + + ++C C ++ R P C H FC C+ +
Sbjct: 2 EPDGRGAWAHSRAALDRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG------ 55
Query: 123 RKCPICYEAVHLGDLK---SFRSVIKRARAVNEEVT 155
CP+CY + DLK S+I+ + +
Sbjct: 56 TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLRNLLH 91
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 46.9 bits (111), Expect = 4e-08
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 86 KCPICLDLPRAPQM-TRCGHCFCWPCILHYLALSDKSWRKCPIC 128
+CPICL+ P M C H FC+ CI ++ + CP+C
Sbjct: 7 RCPICLEDPSNYSMALPCLHAFCYVCITRWI----RQNPTCPLC 46
>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 78
Score = 46.6 bits (110), Expect = 6e-08
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLK 138
E +CPI L+L + P + G + I +L D + CP E + L
Sbjct: 7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWL---DAGHKTCPKSQETLLHAGLT 59
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 44.1 bits (104), Expect = 3e-07
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 83 EDIKCPICLDLPRAPQMTR----CGHCFCWPCILHYLALSDKSWRKCPIC 128
+ ++C +CL + R CGH F C+ +L S CP+C
Sbjct: 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWL----GSHSTCPLC 49
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 43.2 bits (101), Expect = 8e-07
Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 8/62 (12%)
Query: 83 EDIKCPICLDLPRAPQMTR-----CGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137
+D CP C + CGH C C+ + CP C + +
Sbjct: 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLF---VRGAGNCPECGTPLRKSNF 58
Query: 138 KS 139
+
Sbjct: 59 RV 60
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 40.2 bits (93), Expect = 1e-05
Identities = 11/64 (17%), Positives = 19/64 (29%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRS 142
+ + I +L R P +T G + I +L L + +
Sbjct: 6 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKE 65
Query: 143 VIKR 146
VI
Sbjct: 66 VIDA 69
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 38.6 bits (89), Expect = 3e-05
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 87 CPICLDLPR-APQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDL 137
C I +PR + F + Y K PI E + + ++
Sbjct: 3 CAISGKVPRRPVLSPKSRTIFEKSLLEQY----VKDTGNDPITNEPLSIEEI 50
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 37.8 bits (87), Expect = 1e-04
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 7/54 (12%)
Query: 82 NEDIKCPICLDLPRAPQMTR---CGHCFCWPCILHYLALSDKSWR----KCPIC 128
+ C +CL QMT C FC C+ Y+ L K CP
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDA 56
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 114
Score = 36.2 bits (82), Expect = 7e-04
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 22/85 (25%)
Query: 63 GDPDQLVKWEYIQQIRGFGNEDIKCPICLDLPRAPQ------------------MTRCGH 104
G+P+Q+++ +Y ++++ ED C IC++ +T+C H
Sbjct: 7 GEPEQVIR-KYTEELKVAPEED--CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSH 63
Query: 105 CFCWPCILHYLALSDKSWR-KCPIC 128
F C+L +K +CP C
Sbjct: 64 AFHLLCLLAMYCNGNKDGSLQCPSC 88
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 34.3 bits (78), Expect = 8e-04
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 7/48 (14%)
Query: 85 IKCPICLDL----PRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
++CP+C++ CG+ C C + CP C
Sbjct: 1 VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENG---LCPAC 45
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 33.3 bits (75), Expect = 0.002
Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 7/51 (13%)
Query: 83 EDIKCPICLD-----LPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
+ C IC + RA T C+ +L +S C IC
Sbjct: 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR--NTACQIC 53
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 33.9 bits (77), Expect = 0.004
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 5/59 (8%)
Query: 81 GNEDIKCPIC-----LDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHL 134
G+ +C +C + + C C C + C IC E +
Sbjct: 45 GDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREV 103
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 33.6 bits (76), Expect = 0.004
Identities = 10/71 (14%), Positives = 21/71 (29%)
Query: 83 EDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAVHLGDLKSFRS 142
++ PI L P + + LSD++ + +
Sbjct: 21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPNTELKE 80
Query: 143 VIKRARAVNEE 153
I+R A ++
Sbjct: 81 KIQRWLAERKQ 91
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 31.3 bits (70), Expect = 0.022
Identities = 9/45 (20%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 84 DIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPIC 128
C H F + CI +L K+ + CP+
Sbjct: 39 QANQASATSEECTVAWGVCNHAFHFHCISRWL----KTRQVCPLD 79
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 28.9 bits (64), Expect = 0.14
Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 7/52 (13%)
Query: 86 KCPICLD----LPRAPQMTRCGHCFCWPCILHYLAL---SDKSWRKCPICYE 130
+C C + CG FC C+ + + + C C+
Sbjct: 11 RCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHT 62
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 67
Score = 27.3 bits (60), Expect = 0.39
Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 8/56 (14%)
Query: 83 EDIKCPIC----LDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRK----CPICYE 130
+ C IC L R CG FC + + L D + C C+E
Sbjct: 4 DSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFE 59
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 26.9 bits (59), Expect = 0.51
Identities = 14/61 (22%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 83 EDIKCPIC----LDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRK----CPICYEAVHL 134
+ C C R CG FC C L K C C+ A+
Sbjct: 12 DGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAALQR 71
Query: 135 G 135
G
Sbjct: 72 G 72
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 26.6 bits (58), Expect = 0.69
Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 101 RCGHCFCWPCILHYLAL--SDKSWRKCPICYEAVH 133
+CG+ FC C S K R C C+ +
Sbjct: 29 QCGNIFCAECSAKNALTPSSKKPVRVCDACFNDLQ 63
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 28.2 bits (62), Expect = 0.85
Identities = 7/33 (21%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 51 VVRLGEDYGIHLGDPDQL--VKWEYIQQIRGFG 81
+ + ++ G+ Q+ +KW++ + I+G+G
Sbjct: 197 LAIIDKNTGLTFKKNLQVENMKWDFAKDIKGYG 229
>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 M [TaxId: 9606]}
Length = 157
Score = 26.9 bits (59), Expect = 1.4
Identities = 11/59 (18%), Positives = 17/59 (28%), Gaps = 4/59 (6%)
Query: 59 GIHLGDPDQLVKWEYIQQIRG----FGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILH 113
I DPD L+ ++ + G + P P +C P I
Sbjct: 22 DISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDL 80
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 23.8 bits (51), Expect = 6.5
Identities = 7/31 (22%), Positives = 9/31 (29%), Gaps = 6/31 (19%)
Query: 86 KCPICLDL----PRAPQMT--RCGHCFCWPC 110
C C + T +C FC C
Sbjct: 20 WCAQCSFGFIYEREQLEATCPQCHQTFCVRC 50
>g1mhm.1 d.156.1.1 (B:,A:) S-adenosylmethionine decarboxylase
{Potato (Solanum tuberosum) [TaxId: 4113]}
Length = 323
Score = 25.7 bits (56), Expect = 6.7
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 9/66 (13%)
Query: 178 PTDMLMNVSAKCNAYIAINLDYPAI----APIFSVQLELPGKLIKTVHNDDAVRCCDSFL 233
P D S + Y ++ + F P + +H D A + +
Sbjct: 238 PEDGFTYASFESVGYNPKTMELGPLVERVLACFE-----PAEFSVALHADVATKLLERIC 292
Query: 234 IQFIQG 239
++G
Sbjct: 293 SVDVKG 298
>d2f9yb1 c.14.1.4 (B:23-285) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta, AccD {Escherichia coli [TaxId:
562]}
Length = 263
Score = 25.1 bits (54), Expect = 7.5
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 122 WRKCPICYEAVHLGDLKS 139
W KC C + ++ +L+
Sbjct: 2 WTKCDSCGQVLYRAELER 19
>d1m2ka_ c.31.1.5 (A:) AF1676, Sir2 homolog (Sir2-AF1?) {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 249
Score = 25.2 bits (54), Expect = 7.7
Identities = 21/129 (16%), Positives = 32/129 (24%), Gaps = 11/129 (8%)
Query: 86 KCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKSWRKCPICYEAV--HLGDLKSFRSV 143
+ + + C A KC C + +
Sbjct: 106 RAGSRNVIHLHGSLRVVRCTSCNNSFEVESAPKIPPLPKCDKCGSLLRPGVVWAGEMLPP 165
Query: 144 IKRARAVNEEVTFQLMKRERGSTVVSPVAQWDFHPTDMLMNVSAKCNAYIA-INLDYPAI 202
RA+ E ++ S VV P A L + + I IN D +
Sbjct: 166 DVLDRAMREVERADVIIVAGTSAVVQPAA--------SLPLIVKQRGGAIIEINPDETPL 217
Query: 203 APIFSVQLE 211
PI L
Sbjct: 218 TPIADYSLR 226
>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6
[TaxId: 1422]}
Length = 371
Score = 25.2 bits (54), Expect = 7.8
Identities = 12/55 (21%), Positives = 15/55 (27%), Gaps = 7/55 (12%)
Query: 70 KWEYIQQIRG---FGNEDIKCPICLDLPRAPQMTRCGHCFCWPCILHYLALSDKS 121
K IQ G F D + +A M H W + DK
Sbjct: 54 KPISIQPEEGKFNFEQADR----IVKFAKANGMDIRFHTLVWHSQVPQWFFLDKE 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.139 0.451
Gapped
Lambda K H
0.267 0.0591 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 940,287
Number of extensions: 43258
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 39
Length of query: 243
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 160
Effective length of database: 1,268,006
Effective search space: 202880960
Effective search space used: 202880960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)