BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3979
(286 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
Length = 200
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 20/168 (11%)
Query: 116 LEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLS 175
EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDAI+D+L+T +LYE+ S
Sbjct: 11 FEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHS 70
Query: 176 PGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDXXX 235
PG ++D+RSA+VNN FAS AV+ D HK+ SP L+ + F Q Q +N E+
Sbjct: 71 PGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKN-EMQG--- 126
Query: 236 XXXXXXGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEALV 283
++ + +++ E ++VPKA+GD+FE+L
Sbjct: 127 ----------------MDSELRRSEEDEEKEEDIEVPKAMGDIFESLA 158
>pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
Dicer
Length = 265
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 108/186 (58%), Gaps = 22/186 (11%)
Query: 98 PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
P+ + L+ L I EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDA
Sbjct: 2 PDAEKTLNHL--ISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDA 59
Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
I+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L+ +
Sbjct: 60 ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVID 119
Query: 218 RFAQNQEARNHEISDXXXXXXXXXGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGD 277
F + Q +N ++ + +++ E ++VPKA+GD
Sbjct: 120 DFVKFQLEKNEMQG--------------------MDSELRRSEEDEEKEEDIEVPKAMGD 159
Query: 278 VFEALV 283
+FE+L
Sbjct: 160 IFESLA 165
>pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
Dicer
Length = 265
Score = 120 bits (302), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 87/130 (66%), Gaps = 2/130 (1%)
Query: 98 PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
P+ + L+ L I EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDA
Sbjct: 2 PDAEKTLNHL--ISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDA 59
Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
I+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L+ +
Sbjct: 60 ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVID 119
Query: 218 RFAQNQEARN 227
F + Q +N
Sbjct: 120 DFVKFQLEKN 129
>pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease
Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni
Length = 248
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 110 IPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYE 169
+ +LE+ + Y F+DK+ L+ AL+H ++ + + + +RLEFLGDA++D +V YL+
Sbjct: 25 MKNIEKLEQSLTYEFKDKNLLIHALTHKSF---KKSYNNERLEFLGDAVLDLVVGEYLFH 81
Query: 170 NFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
F+ + G++S +R+A+VN +FA A L+L +L
Sbjct: 82 KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIL 118
>pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
Length = 170
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 63/97 (64%), Gaps = 3/97 (3%)
Query: 110 IPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYE 169
+ +LE+ + Y F+DK+ L+ AL+H ++ + + + +RLEFLGDA++D +V YL+
Sbjct: 25 MKNIEKLEQSLTYEFKDKNLLIHALTHKSF---KKSYNNERLEFLGDAVLDLVVGEYLFH 81
Query: 170 NFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
F+ + G++S +R+A+VN +FA A L+L +L
Sbjct: 82 KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIL 118
>pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer
Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc)
From Campylobacter Jejuni
Length = 144
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 62/92 (67%), Gaps = 2/92 (2%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
+LE+ + Y F+DK+ L+ AL+H ++ + + + +RLEFLGDA++D +V YL+ F+
Sbjct: 4 KLEQSLTYEFKDKNLLIHALTHKSFX--KKSYNNERLEFLGDAVLDLVVGEYLFHKFAKD 61
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
+ G++S +R+A+VN +FA A L+L +L
Sbjct: 62 AEGDLSKLRAALVNEKSFAKIANSLNLGDFIL 93
>pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
Resolution
Length = 220
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
QLEK++ YTF+DKS L +AL+H +Y+ Y+ LEFLGDA+++F + L + +
Sbjct: 6 QLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSPNK 62
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENV 216
G +S +++ +++ F A +L+LHK + ++ E +
Sbjct: 63 REGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI 104
>pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
Length = 221
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
QLEK++ YTF+DKS L +AL+H +Y+ Y+ LEFLGDA+++F + L + +
Sbjct: 6 QLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSPNK 62
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENV 216
G +S +++ +++ F A +L+LHK + ++ E +
Sbjct: 63 REGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI 104
>pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
Length = 221
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
QLEK++ YTF+DKS L +AL+H +Y+ Y+ LEFLGDA+++F + L + +
Sbjct: 6 QLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSPNK 62
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENV 216
G +S +++ +++ F A +L+LHK + ++ E +
Sbjct: 63 REGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI 104
>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
Length = 221
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
QLEK++ YTF+DKS L +AL+H +Y+ Y+ LEFLGDA+++F + L + +
Sbjct: 6 QLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSPNK 62
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENV 216
G +S +++ +++ F A +L+LHK + ++ E +
Sbjct: 63 REGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI 104
>pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1RC5|A Chain A, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
pdb|1RC5|B Chain B, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
pdb|1RC5|C Chain C, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
pdb|1RC5|D Chain D, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
Length = 154
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
QLEK++ YTF+DKS L +AL+H +Y+ Y+ LEFLGDA+++F + L + +
Sbjct: 7 QLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSPNK 63
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENV 216
G +S +++ +++ F A +L+LHK + ++ E +
Sbjct: 64 REGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI 105
>pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From
Aquifex Aeolicus At 2.15 Angstrom Resolution
pdb|1I4S|B Chain B, Crystal Structure Of Rnase Iii Endonuclease Domain From
Aquifex Aeolicus At 2.15 Angstrom Resolution
Length = 147
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
QLEK++ YTF+DKS L +AL+H +Y+ Y+ LEFLGDA+++F + L + +
Sbjct: 6 QLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSPNK 62
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENV 216
G +S +++ +++ F A +L+LHK + ++ E +
Sbjct: 63 REGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI 104
>pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
Length = 221
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 61/102 (59%), Gaps = 3/102 (2%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
QLEK++ YTF+DKS L +AL+H +Y+ Y+ LEFLG+A+++F + L + +
Sbjct: 6 QLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGNALVNFFIVDLLVQYSPNK 62
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENV 216
G +S +++ +++ F A +L+LHK + ++ E +
Sbjct: 63 REGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI 104
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
Length = 252
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 108 RYIPECTQLEKRINYTFQDKSFLLQALSHPTYN------ANRITTSYQRLEFLGDAIIDF 161
R I E Q E IN F+++ L +AL H +Y + S ++LEFLGDA+++
Sbjct: 18 RKIVEEFQKETGIN--FKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLEL 75
Query: 162 LVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
V LY+ + G+++ ++SA + A + +++L K L
Sbjct: 76 FVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLF 120
>pdb|3RV0|A Chain A, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|B Chain B, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|C Chain C, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|D Chain D, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
Length = 341
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 121 NYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEIS 180
N F KSF ++ +A + S +RLEFLGD+ + LV+ +Y F + G +S
Sbjct: 104 NLAFMHKSF--PNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLS 161
Query: 181 DIRSAMVNNVTFASYAVRLDLHKHL 205
++ ++VNN ++ +L+ K L
Sbjct: 162 QMKESIVNNNNLFDWSTKLNFTKRL 186
>pdb|3RV1|A Chain A, Crystal Structure Of The N-Terminal And Rnase Iii Domains
Of K. Polysporus Dcr1 E224q Mutant
pdb|3RV1|B Chain B, Crystal Structure Of The N-Terminal And Rnase Iii Domains
Of K. Polysporus Dcr1 E224q Mutant
Length = 246
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 121 NYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEIS 180
N F KSF ++ +A + S +RLEFLGD+ + LV+ +Y F + G +S
Sbjct: 104 NLAFMHKSF--PNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLS 161
Query: 181 DIRSAMVNNVTFASYAVRLDLHKHL 205
++ ++VNN ++ +L+ K L
Sbjct: 162 QMKESIVNNNNLFDWSTKLNFTKRL 186
>pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii
From Mycobacterium Tuberculosis
Length = 242
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 133 ALSHPTYN-ANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVT 191
AL+H +Y N + +RLEFLGDA++ +T L+ S G+++ +R+++VN
Sbjct: 26 ALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQA 85
Query: 192 FASYAVRL 199
A A RL
Sbjct: 86 LADVARRL 93
>pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|B Chain B, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|C Chain C, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|D Chain D, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2QVW|A Chain A, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|B Chain B, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|C Chain C, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|D Chain D, Structure Of Giardia Dicer Refined Against Twinned Data
Length = 756
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 145 TTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNN 189
T +QRLE LGDA++ F+VTA L F S G + +++ +V N
Sbjct: 331 TDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRN 375
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 148 YQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIR-SAMVNNV 190
YQ+LE LGDA + + +L+ L+ G ++ +R SA N+V
Sbjct: 647 YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSV 690
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,064,181
Number of Sequences: 62578
Number of extensions: 313924
Number of successful extensions: 659
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 23
length of query: 286
length of database: 14,973,337
effective HSP length: 98
effective length of query: 188
effective length of database: 8,840,693
effective search space: 1662050284
effective search space used: 1662050284
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)