BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3979
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE=2 SV=2
Length = 1865
Score = 161 bits (407), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 147/263 (55%), Gaps = 31/263 (11%)
Query: 30 SSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALN--ILP---QSKIDVH 84
S SY+ + DK +AD VE+L G YL SCG A LFL +L +LP QS
Sbjct: 1519 SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPPEKQSSGGSA 1578
Query: 85 EALYGPHPSAVRC----PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYN 140
E YG RC P+ R L+ L I E +INYTF++K++LLQA +H +Y+
Sbjct: 1579 ELQYGWLKIPPRCMFEHPDAERTLNHL--ISGFLNFESKINYTFKNKAYLLQAFTHASYH 1636
Query: 141 ANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLD 200
N IT YQRLEFLGDAI+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D
Sbjct: 1637 YNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYD 1696
Query: 201 LHKHLLHDSPRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTD 260
HK+ SP L+ + F Q Q +N E +G ++ + +++
Sbjct: 1697 YHKYFKAVSPELFHVIDDFVQFQLEKN-----------EMQG---------MDSELRRSE 1736
Query: 261 VYGRVVEYVDVPKALGDVFEALV 283
E ++VPKA+GD+FE+L
Sbjct: 1737 EDEEKEEDIEVPKAMGDIFESLA 1759
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 149 QRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTF 192
+RLE LGD+ + +T YL+ + G +S +RS V+N
Sbjct: 1295 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1338
>sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster GN=Dcr-1 PE=1 SV=1
Length = 2249
Score = 158 bits (400), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 141/276 (51%), Gaps = 48/276 (17%)
Query: 33 YNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNI----------------- 75
YN + + + DK +AD VE+L G YL CG GA+LF+ L +
Sbjct: 1890 YNLVSQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPITRQLDGGNQEQR 1949
Query: 76 LPQSKIDVHE---ALYGPHPSAVR-----CPEQARGLDPLRYIPECTQLEKRINYTFQDK 127
+P S E +YG P+ P LD L + + E+ + Y F+D+
Sbjct: 1950 IPGSTKPNAENVVTVYGAWPTPRSPLLHFAPNATEELDQL--LSGFEEFEESLGYKFRDR 2007
Query: 128 SFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMV 187
S+LLQA++H +Y NR+T YQRLEFLGDA++D+L+T +LYE+ SPG ++D+RSA+V
Sbjct: 2008 SYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALV 2067
Query: 188 NNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCL 247
NN FAS AVR HK H SP L + + RF + Q+ H C+
Sbjct: 2068 NNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGH-----------------CI 2110
Query: 248 IFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEALV 283
+ + D E V+VPKALGDVFE++
Sbjct: 2111 SEEYYLLSEEECD----DAEDVEVPKALGDVFESIA 2142
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 128 SFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMV 187
S +LQAL+ NAN + +RLE +GD+ + + +T YLY + ++ G++S +RS V
Sbjct: 1724 SIILQALT--MSNAND-GINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1780
Query: 188 NNVTFASYAVRLDLHKHLL 206
N+ R L ++++
Sbjct: 1781 ANLNLYRLGRRKRLGEYMI 1799
>sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus GN=DICER1 PE=2 SV=3
Length = 1917
Score = 154 bits (389), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 158/311 (50%), Gaps = 61/311 (19%)
Query: 12 YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQ 71
+ +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A LFL
Sbjct: 1523 FWNPSEENCGVDTGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLC 1580
Query: 72 ALN--ILPQSKIDVHE-ALY--------------GPHPSAVRCPEQARGLD----PLRYI 110
+L +LP K E ALY G + P + G D L+
Sbjct: 1581 SLGLKVLPVIKRTSREKALYPAQENFSSQQKSLSGSCAATAASPRSSAGKDLEYGCLKIP 1640
Query: 111 PECT------------------QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLE 152
P C EK+INY F++K++LLQA +H +Y+ N IT YQRLE
Sbjct: 1641 PRCMFDHPDAEKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLE 1700
Query: 153 FLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRL 212
FLGDAI+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L
Sbjct: 1701 FLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPEL 1760
Query: 213 YENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVP 272
+ + F Q Q +N E +G ++ + +++ E ++VP
Sbjct: 1761 FHVIDDFVQFQLEKN-----------EMQG---------MDSELRRSEEDEEKEEDIEVP 1800
Query: 273 KALGDVFEALV 283
KA+GD+FE+L
Sbjct: 1801 KAMGDIFESLA 1811
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 149 QRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTF 192
+RLE LGD+ + +T YL+ + G +S +RS V+N
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1356
>sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus GN=DICER1 PE=2 SV=3
Length = 1921
Score = 153 bits (386), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/315 (33%), Positives = 157/315 (49%), Gaps = 68/315 (21%)
Query: 12 YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQ 71
+ +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A LFL
Sbjct: 1526 FWNPSEENCGVDAGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLC 1583
Query: 72 ALN--ILPQ-SKIDVHEALYGPHPSAVRCPEQARGLDP---------------------- 106
+L +LP K D L + C + + L P
Sbjct: 1584 SLGLKVLPVIKKTDWESTLCA---TGENCNSEQKNLSPNSVSACIVNSEPSLYKDLEYGC 1640
Query: 107 LRYIPECT------------------QLEKRINYTFQDKSFLLQALSHPTYNANRITTSY 148
L+ P C EK+INY+F++K++LLQA +H +Y+ N IT Y
Sbjct: 1641 LKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCY 1700
Query: 149 QRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHD 208
QRLEFLGDAI+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+
Sbjct: 1701 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAV 1760
Query: 209 SPRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEY 268
SP L+ + F Q Q +N E +G ++ + +++ E
Sbjct: 1761 SPELFHVIDDFVQFQMEKN-----------EMQG---------MDSELRRSEEDEEKEED 1800
Query: 269 VDVPKALGDVFEALV 283
++VPKA+GD+FE+L
Sbjct: 1801 IEVPKAMGDIFESLA 1815
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 149 QRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHD 208
+RLE LGD+ + +T YL+ + G +S +RS V+N + L ++
Sbjct: 1314 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373
Query: 209 --SPRLYENVTRFAQNQEARNHEISDEEEEEEE 239
P + + NQ+ N + ++EE +E
Sbjct: 1374 IFDPPVNWLPPGYIVNQDKSNTDKWEKEETTKE 1406
>sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus GN=Dicer1 PE=1 SV=3
Length = 1916
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/310 (33%), Positives = 156/310 (50%), Gaps = 60/310 (19%)
Query: 12 YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQ 71
+ +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A LFL
Sbjct: 1523 FWNPSEENCGVDTGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLC 1580
Query: 72 ALN--ILPQSKIDVHEALYGP--------------HPSAVRCPEQARGLD----PLRYIP 111
+L +LP K E P +A P + G D L+ P
Sbjct: 1581 SLGLKVLPVIKRTSREKALDPAQENGSSQQKSLSGSCAAPVGPRSSAGKDLEYGCLKIPP 1640
Query: 112 ECT------------------QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEF 153
C EK+INY F++K++LLQA +H +Y+ N IT YQRLEF
Sbjct: 1641 RCMFDHPDAEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEF 1700
Query: 154 LGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLY 213
LGDAI+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L+
Sbjct: 1701 LGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELF 1760
Query: 214 ENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPK 273
+ F + Q +N E +G ++ + +++ E ++VPK
Sbjct: 1761 HVIDDFVKFQLEKN-----------EMQG---------MDSELRRSEEDEEKEEDIEVPK 1800
Query: 274 ALGDVFEALV 283
A+GD+FE+L
Sbjct: 1801 AMGDIFESLA 1810
Score = 34.7 bits (78), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 149 QRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTF 192
+RLE LGD+ + +T YL+ + G +S +RS V+N
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1356
>sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus GN=DICER1 PE=2 SV=3
Length = 1923
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/312 (33%), Positives = 156/312 (50%), Gaps = 62/312 (19%)
Query: 12 YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQ 71
+ +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A LFL
Sbjct: 1528 FWNPSEENCGVDTGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLC 1585
Query: 72 ALN--ILPQSK---------------IDVHEALYGPHPSAVRCPEQARGLDPLRY----- 109
+L +LP K + L G +A +A L L Y
Sbjct: 1586 SLGLKVLPVIKRTDREKAMCPTRENFTSQQKNLSGSRAAASGAGYRASVLKDLEYGCLKI 1645
Query: 110 IPECT------------------QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRL 151
P C EK+INY F++K++LLQA +H +Y+ N IT YQRL
Sbjct: 1646 PPRCMFDHPEADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRL 1705
Query: 152 EFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPR 211
EFLGDAI+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP
Sbjct: 1706 EFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPE 1765
Query: 212 LYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDV 271
L+ + F Q Q +N E +G ++ + +++ E ++V
Sbjct: 1766 LFHVIDDFVQFQLEKN-----------EMQG---------MDSELRRSEEDEEKEEDIEV 1805
Query: 272 PKALGDVFEALV 283
PKA+GD+FE+L
Sbjct: 1806 PKAMGDIFESLA 1817
>sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3
Length = 1922
Score = 149 bits (375), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/314 (34%), Positives = 159/314 (50%), Gaps = 66/314 (21%)
Query: 12 YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQ 71
+ +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A LFL
Sbjct: 1527 FWNPSEENCGVDTGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLC 1584
Query: 72 ALN--ILPQSK-IDVHEAL-----------------------------------YGPHPS 93
+L +LP K D +AL YG
Sbjct: 1585 SLGLKVLPVIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKI 1644
Query: 94 AVRC----PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQ 149
RC P+ + L+ L I EK+INY F++K++LLQA +H +Y+ N IT YQ
Sbjct: 1645 PPRCMFDHPDADKTLNHL--ISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQ 1702
Query: 150 RLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDS 209
RLEFLGDAI+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ S
Sbjct: 1703 RLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVS 1762
Query: 210 PRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYV 269
P L+ + F Q Q +N E +G ++ + +++ E +
Sbjct: 1763 PELFHVIDDFVQFQLEKN-----------EMQG---------MDSELRRSEEDEEKEEDI 1802
Query: 270 DVPKALGDVFEALV 283
+VPKA+GD+FE+L
Sbjct: 1803 EVPKAMGDIFESLA 1816
Score = 34.3 bits (77), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 149 QRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTF 192
+RLE LGD+ + +T YL+ + G +S +RS V+N
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1356
>sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis GN=dicer1 PE=2 SV=2
Length = 1893
Score = 148 bits (373), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 160/309 (51%), Gaps = 59/309 (19%)
Query: 12 YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQ 71
+ +P+E+ + ++ S SY+ + DK +AD VE+L G YL SCG A LFL
Sbjct: 1501 FWNPSEENCGADAGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLC 1558
Query: 72 ALN--ILPQSKIDVHE----ALYGPHPSAVR--CPEQAR---------GLDP--LRYIPE 112
+L +LP+ + V + + ++ R C AR G+D L+ P
Sbjct: 1559 SLGLKVLPEVRKLVTNTNVISASSSYQNSTRDNCTLTARTNTDLSSCKGIDYGYLKIPPR 1618
Query: 113 CT------------------QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFL 154
C EK+INY F++K++LLQA +H +Y+ N IT YQRLEFL
Sbjct: 1619 CMFEHPDAEKTLDHLISGFENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFL 1678
Query: 155 GDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYE 214
GDAI+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L+
Sbjct: 1679 GDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFH 1738
Query: 215 NVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKA 274
+ F Q Q +N E +G ++ + +++ E ++VPKA
Sbjct: 1739 VIDDFVQFQLEKN-----------EMQG---------MDSELRRSEEDEEKEEDIEVPKA 1778
Query: 275 LGDVFEALV 283
+GD+FE+L
Sbjct: 1779 MGDIFESLA 1787
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 149 QRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTF 192
+RLE LGD+ + +T YL+ + G +S +RS V+N
Sbjct: 1290 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1333
>sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis elegans GN=dcr-1 PE=1 SV=3
Length = 1910
Score = 144 bits (363), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 137/254 (53%), Gaps = 19/254 (7%)
Query: 33 YNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALN---ILPQSKIDVHEALYG 89
YN L + + DK +AD VE+L GV+L + G + + + I K DV L
Sbjct: 1560 YNLLTQQHISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQKDQKSDVPSPLLR 1619
Query: 90 PHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQ 149
+ L+ L + TQLE++I Y F+++++L+QA +H +Y NR+T YQ
Sbjct: 1620 FIDTPTNPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQ 1679
Query: 150 RLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDS 209
RLEFLGDA++D+++T YL+E+ SPG ++D+RSA+VNN FAS AV+ + KH +
Sbjct: 1680 RLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMC 1739
Query: 210 PRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYV 269
P LY + +F + RN + + E +++ ++ + +E
Sbjct: 1740 PGLYHMIEKFVKLCSERNFDTNFNAE-------------MYMVTTEEEIDEGQEEDIE-- 1784
Query: 270 DVPKALGDVFEALV 283
VPKA+GD+FE++
Sbjct: 1785 -VPKAMGDIFESVA 1797
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/166 (30%), Positives = 71/166 (42%), Gaps = 29/166 (17%)
Query: 129 FLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVN 188
LL AL+ T NA S +R E +GD+ + F T YLY G++S RS V+
Sbjct: 1396 LLLTALT--TSNAAD-GMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVS 1452
Query: 189 NVTFASYAVRLDL------HKHLLHDS--PRLYENVTRFAQNQEARNHEISDEEEEEEEE 240
N +L + +K HDS P Y F +A N +D+ EE++ E
Sbjct: 1453 NCNLYRLGKKLGIPQLIVANKFDAHDSWLPPCYIPTCDF----KAPN---TDDAEEKDNE 1505
Query: 241 EGIVRCLIFFLIEEK---DVQTDVYGRVVEYVDVPKALGDVFEALV 283
I R L +IEEK D+ G DV K+ D E +
Sbjct: 1506 --IERILDGQVIEEKPENKTGWDIGG------DVSKSTTDGIETIT 1543
>sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300
PE=1 SV=2
Length = 1388
Score = 130 bits (326), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 77/194 (39%), Positives = 116/194 (59%), Gaps = 16/194 (8%)
Query: 26 EKLPSSSYNFL-DRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVH 84
+ LP S ++ R L K VADVVESL G YL G A++F+ + I K+D
Sbjct: 1076 DTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGI----KVD-- 1129
Query: 85 EALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRI 144
+ P QA L + Y +E +NY+F+DKS L++AL+H +Y I
Sbjct: 1130 ---FTTTKIQRDSPIQAEKLVNVGY------MESLLNYSFEDKSLLVEALTHGSYMMPEI 1180
Query: 145 TTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKH 204
YQRLEFLGD+++D+L+T +LY+ + LSPG ++D+RSA VNN +A AV+ +LHKH
Sbjct: 1181 PRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKH 1240
Query: 205 LLHDSPRLYENVTR 218
+L+ S L+++++R
Sbjct: 1241 ILYASHHLHKHISR 1254
>sp|A7LFZ6|DCL4_ORYSJ Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica
GN=DCL4 PE=2 SV=1
Length = 1657
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 125/254 (49%), Gaps = 49/254 (19%)
Query: 30 SSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYG 89
+ S+++L R KV+ADVVESL G +L G + A FL + I +D +
Sbjct: 1146 TRSHHWLHR-----KVIADVVESLIGAFLVEGGFKAAFAFLHWIGI----DVDFN----- 1191
Query: 90 PHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQ 149
+P+ R + + L + LE+ I Y F+ K LLQA HP+++ + YQ
Sbjct: 1192 -NPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHS-GGCYQ 1249
Query: 150 RLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDS 209
RLEFLGDA++++++T+YLY + + PG+I+D+RS V N + A AV +HKHL+ DS
Sbjct: 1250 RLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDS 1309
Query: 210 PRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYV 269
L +++F + N EKD ++E
Sbjct: 1310 NHLTSAISKFEMYVKLSN-------------------------SEKD--------LLEEP 1336
Query: 270 DVPKALGDVFEALV 283
PKALGD+ E+ +
Sbjct: 1337 ACPKALGDIVESCI 1350
Score = 35.0 bits (79), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 147 SYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
S +R E LGDA + ++V + + + L G+++ RS +VNN ++R L ++
Sbjct: 1041 SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYI 1099
>sp|Q7XD96|DCL3B_ORYSJ Endoribonuclease Dicer homolog 3b OS=Oryza sativa subsp. japonica
GN=DCL3B PE=2 SV=2
Length = 1637
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 116/242 (47%), Gaps = 40/242 (16%)
Query: 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQ 100
+ K ++D VE+L G Y GI A+ ++ I + + + + +
Sbjct: 1179 MCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGIDIKCDMKLLQEV----------KFN 1228
Query: 101 ARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIID 160
A L L I + +LE ++ Y F K LL+A++HP+ + YQRLEFLGD+++D
Sbjct: 1229 ASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDYCYQRLEFLGDSVLD 1288
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFA 220
L+T +LY + + PGE++D+RSA+V+N FA VR ++H HL H S L E +T +
Sbjct: 1289 LLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQHGSGILLEQITEYV 1348
Query: 221 QNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFE 280
++ N E +E E FL VPK LGD+ E
Sbjct: 1349 RS----NLECQGKESE-------------FLQHTT-------------CKVPKVLGDIME 1378
Query: 281 AL 282
++
Sbjct: 1379 SI 1380
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 145 TTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKH 204
T S +RLE LGD+++ ++V L+ + G++SD+RS V N T + + L +
Sbjct: 1061 TFSLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGY 1120
Query: 205 LLHDS--PRLY 213
+ ++ PR +
Sbjct: 1121 VRDNAFDPRRW 1131
>sp|Q10HL3|DCL2A_ORYSJ Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica
GN=DCL2A PE=2 SV=1
Length = 1410
Score = 112 bits (280), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 73/215 (33%), Positives = 113/215 (52%), Gaps = 26/215 (12%)
Query: 7 LDFDLYQDPTEDGKKVS--SPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIE 64
LD+D D KK+S +P + S ++ + K +AD VE+L G YL + G +
Sbjct: 1077 LDYD-----ERDNKKISFLAPNGMYSQR-----KMSIKSKRIADSVEALIGAYLSTAGEK 1126
Query: 65 GAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTF 124
A L +++L + I+ H + P + +A +R LE + Y F
Sbjct: 1127 AAFLLMKSLGM----NIEFHTEI----PVERKISMKAEEFINVR------SLEGMLGYKF 1172
Query: 125 QDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRS 184
D LL+AL+H +Y + T+ YQRLEFLGDAI+D L T Y Y + +P ++D+RS
Sbjct: 1173 NDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRS 1232
Query: 185 AMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRF 219
A VNN +A AV+ L+KH+LH S L+ ++ +
Sbjct: 1233 ASVNNNCYAHAAVKSGLNKHILHSSSELHRKMSYY 1267
>sp|Q69LX2|DCL2B_ORYSJ Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica
GN=DCL2B PE=2 SV=2
Length = 1377
Score = 111 bits (277), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 14/182 (7%)
Query: 38 RIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRC 97
++ + K +AD VE+L G YL + G + A L +++L + I+ H + P +
Sbjct: 1071 KMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGM----NIEFHTEI----PVERKI 1122
Query: 98 PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
+A +R LE + Y F D LL+AL+H +Y + T+ YQRLEFLGDA
Sbjct: 1123 SMKAEEFIDVR------SLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQRLEFLGDA 1176
Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
I+D L T Y Y + +P ++D+RSA VNN +A AV+ L+KH+LH S L+ ++
Sbjct: 1177 ILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSSSELHRKMS 1236
Query: 218 RF 219
+
Sbjct: 1237 YY 1238
>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2
Length = 1702
Score = 108 bits (270), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 98/180 (54%), Gaps = 23/180 (12%)
Query: 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNI-LPQSKIDVHEALYGPHPSAVRCPE 99
L K +ADVVE+L G +L G +GA+ FL+ + + + + V +A
Sbjct: 1230 LYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIASR-------- 1281
Query: 100 QARGLDPLRYIPECTQ-----LEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFL 154
RY+P T+ LE +++Y F K L+QA HP+YN + YQRLEFL
Sbjct: 1282 --------RYLPLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHG-GGCYQRLEFL 1332
Query: 155 GDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYE 214
GDA++D+L+T+Y + F L PG+++D+RS VNN A+ AV L + L +S L+E
Sbjct: 1333 GDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHE 1392
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 147 SYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
S +RLE LGDA + F V+ +L+ + L GE++ RS +VNN A++ +L ++
Sbjct: 1117 SLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYI 1175
>sp|A4RKC3|DCL1_MAGO7 Dicer-like protein 1 OS=Magnaporthe oryzae (strain 70-15 / ATCC
MYA-4617 / FGSC 8958) GN=DCL1 PE=3 SV=2
Length = 1591
Score = 107 bits (268), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/251 (29%), Positives = 123/251 (49%), Gaps = 21/251 (8%)
Query: 37 DRIKLGDKVVADVVESLTGVYLRSCGIEGAMLF---LQALNILPQSKIDVHEALYGPHPS 93
D LGDK +ADV E+L G + + + F ++A+ ++ SK +A + + +
Sbjct: 1165 DEHALGDKSIADVCEALIGAAYLTAQAQSSPNFDLAVKAVTVMTHSKTHTMQA-WSDYYA 1223
Query: 94 AVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNAN-RITTSYQRLE 152
+ +CPE + C+Q++ ++ Y F++ L A HP+Y SYQRLE
Sbjct: 1224 SYQCPEWLSTPPSQTQLELCSQIKNKMGYRFKNPRLLRCAFMHPSYPRQYENIPSYQRLE 1283
Query: 153 FLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRL 212
FLGD+++D + YL++ P +++ + AMV+N F AV L H+HL+H P L
Sbjct: 1284 FLGDSLLDMVCVDYLFKKHPDKDPQWLTEHKMAMVSNQFFGCVAVGLGFHRHLIHMQPAL 1343
Query: 213 YENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVP 272
++T +A E+ ++ EE + + R E+D D + +E P
Sbjct: 1344 GGSITEWA--------ELVTKKREEARQLAVRRGQ-----REEDYARDFW---IEVHHPP 1387
Query: 273 KALGDVFEALV 283
K L D+ EA V
Sbjct: 1388 KCLPDILEAYV 1398
>sp|Q9LXW7|DCL3_ARATH Endoribonuclease Dicer homolog 3 OS=Arabidopsis thaliana GN=DCL3 PE=1
SV=2
Length = 1580
Score = 104 bits (260), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 52/243 (21%)
Query: 44 KVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARG 103
K V+D E+L G Y S G+ ++ ++ L I D + + + ++RC
Sbjct: 1139 KSVSDCAEALIGAYYVSGGLSASLHMMKWLGI--DVDFDPNLVVEAINRVSLRC------ 1190
Query: 104 LDPLRYIP---ECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIID 160
YIP E +LE++I + F K L +A++H + R + SY+RLEFLGD+++D
Sbjct: 1191 -----YIPKEDELIELERKIQHEFSAKFLLKEAITHSSL---RESYSYERLEFLGDSVLD 1242
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFA 220
FL+T +L+ + PGE++D+RSA VNN FA AV+ +LH HL + L + +
Sbjct: 1243 FLITRHLFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHLQRCATVLETQINDY- 1301
Query: 221 QNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFE 280
L+ F + D GR + + PKALGDV E
Sbjct: 1302 --------------------------LMSF------QKPDETGRSIPSIQGPKALGDVVE 1329
Query: 281 ALV 283
++
Sbjct: 1330 SIA 1332
Score = 34.7 bits (78), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 147 SYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
S +RLE LGD+++ ++ + +L+ + G++S R ++++N L ++
Sbjct: 1020 SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIR 1079
Query: 207 HDS--PRLYENVTRFA 220
+ + PR + +F+
Sbjct: 1080 NGAFEPRRWTAPGQFS 1095
>sp|Q5N870|DCL3A_ORYSJ Endoribonuclease Dicer homolog 3a OS=Oryza sativa subsp. japonica
GN=DCL3A PE=2 SV=1
Length = 1651
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 18/189 (9%)
Query: 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKID-VHEALYGPHPSAVRCPE 99
+ K +AD VE++ G Y G+ AM L+ L I + + D + +A+
Sbjct: 1179 MCSKTIADCVEAIIGAYYAGGGLRAAMAVLKWLGIGAEIEEDLIVQAILSASVQT----- 1233
Query: 100 QARGLDPLRYIPECT---QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGD 156
Y+P+ LE ++ Y+F K L++AL+HP+ Y+RLEFLGD
Sbjct: 1234 ---------YLPKDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQELGAKYCYERLEFLGD 1284
Query: 157 AIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENV 216
A++D L+T YL+ + + GE++D+RSA VNN FA AV+ + H L H S L + +
Sbjct: 1285 AVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFHHFLQHSSGLLLDQI 1344
Query: 217 TRFAQNQEA 225
T + E
Sbjct: 1345 TEYVNRLEG 1353
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 34/59 (57%)
Query: 147 SYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
S +RLE LGD+++ + V+ +L+ F + G++S IR M+ N T + ++ ++
Sbjct: 1064 SMERLELLGDSVLKYAVSCHLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYV 1122
>sp|Q8LMR2|DCL1_ORYSJ Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp. japonica
GN=DCL1 PE=3 SV=1
Length = 1883
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 102/182 (56%), Gaps = 12/182 (6%)
Query: 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQ 100
L K +ADVVE+L GVY + G A ++ + I +++D E P P PE
Sbjct: 1477 LSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGI--HAELDPEEI---PPPKPYDIPES 1531
Query: 101 ARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIID 160
+R I T L+ + FQ+K L++A++H + ++ ++ YQRLEF+GDA++D
Sbjct: 1532 I-----MRSINFDT-LKGVLGIEFQNKGLLVEAITHASRPSSGVSC-YQRLEFVGDAVLD 1584
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFA 220
L+T +L+ ++ L PG ++D+R+A VNN FA AV+ LH HL H S L + F
Sbjct: 1585 HLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFV 1644
Query: 221 QN 222
++
Sbjct: 1645 KD 1646
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
QL+ I+Y + +L+AL T + + T Y+R E LGDA + ++V+ +L+ +
Sbjct: 1323 QLKDIIDYPV-PATKILEAL---TAASCQETLCYERAELLGDAYLKWVVSRFLFLKYPQK 1378
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNH--EISD 232
G+++ +R MV+N+ YA+ L ++ D RFA ++ A + D
Sbjct: 1379 HEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQAD---------RFAPSRWAAPGVLPVFD 1429
Query: 233 EEEEEEE 239
EE E E
Sbjct: 1430 EESREYE 1436
>sp|Q9SP32|DCL1_ARATH Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana GN=DCL1 PE=1
SV=2
Length = 1909
Score = 100 bits (249), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 100/181 (55%), Gaps = 11/181 (6%)
Query: 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQ 100
L K +ADVVE+L GVY G A ++ + I + D + V PE
Sbjct: 1497 LSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVEDDPDEVDGTL----KNVNVPES 1552
Query: 101 ARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIID 160
L + ++ LE+ + Y F++K L++A++H + ++ ++ YQRLEF+GDA++D
Sbjct: 1553 V--LKSIDFV----GLERALKYEFKEKGLLVEAITHASRPSSGVSC-YQRLEFVGDAVLD 1605
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFA 220
L+T +L+ ++ L PG ++D+R+A VNN FA AV+ LH +L H S L + + F
Sbjct: 1606 HLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYLRHGSSALEKQIREFV 1665
Query: 221 Q 221
+
Sbjct: 1666 K 1666
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 39/187 (20%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
QL+ I+Y S +L+AL T + + T Y+R E LGDA + ++V+ +L+ +
Sbjct: 1345 QLKNLISYPIP-TSKILEAL---TAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQK 1400
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDS-----------PRLYENVTR----- 218
G+++ +R MV+N+ +A+ L ++ D P +++ T+
Sbjct: 1401 HEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSS 1460
Query: 219 -FAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEY-VDVPKALG 276
F + Q+ + E SD E+ E E+G ++ G + Y V K L
Sbjct: 1461 FFDEEQKPVSEENSDVFEDGEMEDG-----------------ELEGDLSSYRVLSSKTLA 1503
Query: 277 DVFEALV 283
DV EAL+
Sbjct: 1504 DVVEALI 1510
>sp|Q09884|DCR1_SCHPO Protein Dicer OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=dcr1 PE=1 SV=1
Length = 1374
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 104/191 (54%), Gaps = 15/191 (7%)
Query: 40 KLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNI--LPQSKIDVHEALYGPHPSAVRC 97
KL K +AD+VE+ G L G++ A+ ++L++ L S D + + A
Sbjct: 1016 KLSVKRIADMVEASIGACLLDSGLDSALKICKSLSVGLLDISNWDEWNNYFDLNTYA--- 1072
Query: 98 PEQARGLDPLRYI--PECTQLEKRINYTFQDKSFLLQALSHPTYNANR-ITTSYQRLEFL 154
D LR + P + +E+ I Y+F++K L A HP+ + + I +YQ+LEFL
Sbjct: 1073 -------DSLRNVQFPYSSYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFL 1125
Query: 155 GDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYE 214
GDA++D+++ YLY+ + + + GE++D +S V N + + L+LHK++ H+S + +
Sbjct: 1126 GDAVLDYIIVQYLYKKYPNATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCD 1185
Query: 215 NVTRFAQNQEA 225
+ + + EA
Sbjct: 1186 AIFEYQELIEA 1196
>sp|Q1DKI1|DCL1_COCIM Dicer-like protein 1 OS=Coccidioides immitis (strain RS) GN=DCL1 PE=3
SV=3
Length = 1500
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 99/214 (46%), Gaps = 13/214 (6%)
Query: 41 LGDKVVADVVESLTGVYLRSCGIEGAM-----LFLQALNILPQSKIDVHEAL-YGPHPSA 94
L DK +ADV E+L G +C + + + ++A+ L S D H L + +
Sbjct: 1151 LADKTIADVCEALIG----ACCLLASKNHRFDIAVKAVTALVSS--DDHNVLNWEQYSRL 1204
Query: 95 VRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTY-NANRITTSYQRLEF 153
P+ + + Q++K++ Y F+ L A +HP+Y +A YQRLEF
Sbjct: 1205 YSIPKYQTAVVDAAELDLAAQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEF 1264
Query: 154 LGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLY 213
LGDA++D ++Y P +++ + AMV+N S AVRL LH HL H S L
Sbjct: 1265 LGDALLDMACVEHIYHKHPDKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQ 1324
Query: 214 ENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCL 247
+T + + EA E D + +CL
Sbjct: 1325 SQITNYVEEIEAAELESGDPPDAWTLTSDPPKCL 1358
>sp|A2RAF3|DCL1_ASPNC Dicer-like protein 1 OS=Aspergillus niger (strain CBS 513.88 / FGSC
A1513) GN=dcl1 PE=3 SV=2
Length = 1525
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 120/248 (48%), Gaps = 37/248 (14%)
Query: 41 LGDKVVADVVESLTGVYLRSCGIEGAM-LFLQALNILPQSKIDVHEA-LYGPHPSAVRCP 98
L +K +ADV E+L G L S G + + ++A+ L S H+A + + S P
Sbjct: 1171 LAEKTIADVCEALIGAALLSGGPDHRFDMAVKAVTTLVNSP--SHKAERWKDYISFYTIP 1228
Query: 99 E-QARGLDPLR-YIPECTQLEKRINYTFQDKSFLLQALSHPTY-NANRITTSYQRLEFLG 155
+ Q R D Y+ ++E++++Y F+ + L A +HP+Y +A YQRLEFLG
Sbjct: 1229 KYQRRAADGAELYLSR--KIEEKLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLG 1286
Query: 156 DAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYEN 215
D++ID + L+ F P +++ + AMV+N + AV+L LH HL + S L
Sbjct: 1287 DSLIDMVCVEDLFARFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQ 1346
Query: 216 VTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKAL 275
+T++A+ EI + E E EG V Y V + D PK L
Sbjct: 1347 ITQYAE-------EI---QTAEGESEGAVD----------------YWTVTK--DPPKCL 1378
Query: 276 GDVFEALV 283
D+ EA V
Sbjct: 1379 PDMVEAYV 1386
>sp|Q0UL22|DCL2_PHANO Dicer-like protein 2 OS=Phaeosphaeria nodorum (strain SN15 / ATCC
MYA-4574 / FGSC 10173) GN=DCL2 PE=3 SV=2
Length = 1399
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/148 (37%), Positives = 84/148 (56%), Gaps = 17/148 (11%)
Query: 44 KVVADVVESLTGVYLRSCGIEGAMLFLQALNILP-QSKIDVHEALYGPHPSAVRCPEQA- 101
K++AD++ESL G G E A+L +Q L LP + I V A H +A P +A
Sbjct: 1036 KLIADIIESLIGACYTVGGFEKAVLCVQTL--LPLEPWISVPAANSILHEAA---PAEAD 1090
Query: 102 -RGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIID 160
GLD LE I YTF+ K LL+AL+H +++ + SY+RLEFLGDA++D
Sbjct: 1091 LMGLD---------VLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYERLEFLGDAVLD 1141
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVN 188
++++ L+ + LS ++ IR+A VN
Sbjct: 1142 YIISKRLHAHSPELSHQKMHAIRTATVN 1169
Score = 38.9 bits (89), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Query: 129 FLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVN 188
L +AL + N +YQRLEFLGD I+ F+ T +L ++ + +V+
Sbjct: 930 LLTRALKSSAADGN---DNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVS 986
Query: 189 NVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLI 248
N A + L + ++ S + R+A + A EE + I+ LI
Sbjct: 987 NGFLARATIAAGLDRFMITKSFTGAKWAPRYAGDLLAETGPAVKEERSSKLIADIIESLI 1046
>sp|Q2UNX5|DCL2_ASPOR Dicer-like protein 2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB
40) GN=dcl2 PE=3 SV=1
Length = 1377
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 88/153 (57%), Gaps = 19/153 (12%)
Query: 40 KLGDKVVADVVESLTGVYLRSCGIEGAML----FLQALNILPQSKIDVHEALYGPHPSAV 95
++ KV+ADV+E+L G G A + FL +N P +D+ PS +
Sbjct: 1030 QMSAKVLADVIEALIGAAYLDGGHSKAQICTHCFLPEVNRQP---LDI--------PSLI 1078
Query: 96 RCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLG 155
E R R+I + L++ + YTF+++ L++AL+HP+ ++ T SYQRLEFLG
Sbjct: 1079 TQTEHGR---TARHIID-GDLQRHLGYTFKNEDLLIEALTHPSCQHDQTTQSYQRLEFLG 1134
Query: 156 DAIIDFLVTAYLYENFSHLSPGEISDIRSAMVN 188
DAI+D ++ +++ + +SPG+++ I+ A+VN
Sbjct: 1135 DAILDMVIVPIIFQYSNKISPGDMTLIKHAVVN 1167
Score = 39.7 bits (91), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query: 124 FQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIR 183
F D ++ A+ P+ T+YQR EFLGD+I+ ++V+ L+ + G +++ R
Sbjct: 925 FADIQHVITAIMAPSAQG---VTNYQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGR 981
Query: 184 SAMVNNVTFASYAVRLDLHKHLLHD--SPRLY 213
+ +V N A+ L ++ +PR +
Sbjct: 982 TTIVQNPRLTRAALDAGLDSFIITKALTPRRW 1013
>sp|A6Q1H0|RNC_NITSB Ribonuclease 3 OS=Nitratiruptor sp. (strain SB155-2) GN=rnc PE=3
SV=1
Length = 226
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 64/97 (65%), Gaps = 3/97 (3%)
Query: 110 IPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYE 169
+ + + EK++ Y+F+DK L +AL+H +Y + + +RLEFLGDA++D +V YL++
Sbjct: 1 MKQLEEFEKKLGYSFEDKKLLKEALTHKSYKS---PVNNERLEFLGDAVLDLVVGEYLFK 57
Query: 170 NFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
F + GE+S +R+++VN FA A +LD+ K++
Sbjct: 58 KFPKANEGELSKLRASLVNEEGFAKLAQKLDIGKYIF 94
>sp|A6QCJ0|RNC_SULNB Ribonuclease 3 OS=Sulfurovum sp. (strain NBC37-1) GN=rnc PE=3 SV=1
Length = 223
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 62/92 (67%), Gaps = 3/92 (3%)
Query: 114 TQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSH 173
+QLEKR+NYTF+DK +++AL+H +Y + + +RLEFLGDA++D +V YL++ F
Sbjct: 5 SQLEKRLNYTFKDKQLIIEALTHKSY---KKPYNNERLEFLGDAVLDLIVGEYLFKKFPK 61
Query: 174 LSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
G +S IR+++VN F A ++DL ++
Sbjct: 62 SDEGILSKIRASLVNESGFTLLARKIDLGSYI 93
>sp|Q2U6C4|DCL1_ASPOR Dicer-like protein 1 OS=Aspergillus oryzae (strain ATCC 42149 / RIB
40) GN=dcl1 PE=3 SV=2
Length = 1523
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 101/193 (52%), Gaps = 7/193 (3%)
Query: 41 LGDKVVADVVESLTGVYLRSCGIEGAM-LFLQALNILPQSKIDVHEAL-YGPHPSAVRCP 98
L +K VADV E+L G L S G+ + ++A+ + S H+AL + + S+ P
Sbjct: 1169 LREKTVADVCEALIGASLLSGGLHNQFDMAVKAVTAVVDSP--NHKALCWADYTSSYMLP 1226
Query: 99 E-QARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITT-SYQRLEFLGD 156
+ Q + D + ++E+++ Y F+ L A +HP+Y + YQRLEFLGD
Sbjct: 1227 KYQTQSPDGYE-LDLGRKVEEKLGYRFKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGD 1285
Query: 157 AIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENV 216
+++D + L+ + P +++ + AMV+N + AV+L LH HL H S L +
Sbjct: 1286 SLLDMVCVDDLFYRYPDKDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQI 1345
Query: 217 TRFAQNQEARNHE 229
T +A+ +A +E
Sbjct: 1346 THYAEEIQAAENE 1358
>sp|A1D9Z6|DCL2_NEOFI Dicer-like protein 2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM
3700 / FGSC A1164 / NRRL 181) GN=dcl2 PE=3 SV=1
Length = 1388
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 96/176 (54%), Gaps = 25/176 (14%)
Query: 19 GKKVSSP------EKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQA 72
+K S+P E++P+ + ++ KV+ADVVE+L G G A ++
Sbjct: 1017 SRKWSAPLISEKLERVPA-------KRQMSTKVLADVVEALIGAAYMDGGHATAQACIRR 1069
Query: 73 LNILPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQ 132
L LP+ I++H +V PE AR + R L+ I YTF+D+S L++
Sbjct: 1070 L--LPE--INLHAVDTRTATRSV-APESARHMMNER-------LKDHIGYTFEDESLLVE 1117
Query: 133 ALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVN 188
AL+HP+ + + T SYQRLE+LGDA++D ++ + ++ + G+++ I+ A+VN
Sbjct: 1118 ALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHPIQRPQGDMTKIKHAVVN 1173
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 124 FQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIR 183
F+ ++ A+S P +A T+YQR EFLGD+I+ F V+ L+ + G +S+ R
Sbjct: 932 FKSTDHIITAISTPFAHA---LTNYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLSEGR 988
Query: 184 SAMVNNVTFASYAVRLDLHKHLL 206
+ +V N A A+ L +++
Sbjct: 989 AMIVQNPRLAKAALDTGLDAYIV 1011
>sp|A1C9M6|DCL2_ASPCL Dicer-like protein 2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS
513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dcl2 PE=3 SV=1
Length = 1389
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 86/149 (57%), Gaps = 12/149 (8%)
Query: 40 KLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPE 99
++ KV+ADVVE+L G G A ++ LP+ I++H +L S PE
Sbjct: 1038 QVSSKVLADVVEALIGAAYMDGGHAAAQACIR--RFLPE--INLH-SLDTRTLSRSVAPE 1092
Query: 100 QARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAII 159
AR R L++ I+YTF+++S L++AL+HP+ + + T SYQRLEFLGDA++
Sbjct: 1093 GARQTIHDR-------LKRHISYTFENESLLVEALTHPSCDYDASTQSYQRLEFLGDAVL 1145
Query: 160 DFLVTAYLYENFSHLSPGEISDIRSAMVN 188
D ++ + ++ + + G ++ I+ A+VN
Sbjct: 1146 DMIIVSAIFNHPVQMPQGHMTKIKHALVN 1174
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 124 FQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIR 183
F ++ A+S P+ A T+YQR EFLGD+I+ F V+ L+ + G +S+ R
Sbjct: 933 FTSTQHIITAISAPSAQA---LTNYQRYEFLGDSILKFSVSCQLFFKHPNWHEGYLSEGR 989
Query: 184 SAMVNNVTFASYAVRLDLHKHLL--------HDSPRLYENVTRFAQNQEARNHEISD 232
+V N A+ L ++ +P + E + R A ++ + ++D
Sbjct: 990 DEIVQNPRLTKAALDTGLDAFVITKMFTPRKWSAPLISERLERVAGKRQVSSKVLAD 1046
>sp|P0C5H7|DCL2_EMENI Dicer-like protein 2 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=dcl2 PE=3 SV=1
Length = 1429
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 94/181 (51%), Gaps = 24/181 (13%)
Query: 20 KKVSSP---EKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA----MLFLQA 72
+K S+P EKL +S+ + KV+ADVVE+L G G+ A + FL
Sbjct: 973 RKWSAPLISEKLYASASTR----SMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLPE 1028
Query: 73 LNILPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQ 132
+ LP++K+ P P ++ P P ++ + LE I YTF+DK+ L++
Sbjct: 1029 IE-LPETKL--------PRPESM--PMSKDHKKP--HLIQQENLENHIGYTFKDKTLLME 1075
Query: 133 ALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTF 192
AL+HP+ + SYQRLEFLGDA++D L+ + + GE++ I+ A+VN
Sbjct: 1076 ALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAHHVECQQGEMTKIKHAIVNGHLL 1135
Query: 193 A 193
A
Sbjct: 1136 A 1136
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 124 FQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIR 183
FQD ++ A++ P A T YQR EF GD+++ F V A L+ N + G +++
Sbjct: 887 FQDLRHVITAITMPLAQA---PTDYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETL 943
Query: 184 SAMVNNVTFASYAVRLDLHKHLLHD--SPRLY 213
A+V N A+ L +++ + +PR +
Sbjct: 944 HALVQNARLTRAALDQGLDAYIISNRFTPRKW 975
>sp|A1CBC9|DCL1_ASPCL Dicer-like protein 1 OS=Aspergillus clavatus (strain ATCC 1007 / CBS
513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dcl1 PE=3 SV=2
Length = 1534
Score = 79.3 bits (194), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 70/250 (28%), Positives = 113/250 (45%), Gaps = 44/250 (17%)
Query: 41 LGDKVVADVVESLTGVYLRSCGIEGAM-LFLQALNIL------PQSKIDVHEALYGPHPS 93
LG+K +ADV E+L G L S G E + ++A+++ S+ + LY P
Sbjct: 1178 LGEKTIADVCEALIGACLLSGGPEHRFDMGVKAVSVFVDSPSHAVSRWKEYIGLYKPPNY 1237
Query: 94 AVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRI--TTSYQRL 151
VR E A L Q+E+++ Y F+ L A++HP+ + YQRL
Sbjct: 1238 QVRKAEGAETNLAL-------QVEEKLGYHFRYPRLLCSAVTHPSTPSTWYFRVPCYQRL 1290
Query: 152 EFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPR 211
EFLGD+++D + L+ F P +++ + AMV+N + AV+L HKH+ S
Sbjct: 1291 EFLGDSLLDMVCVEDLFHRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNP 1350
Query: 212 LYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDV 271
L +T + + + E E E EG V ++++ + D
Sbjct: 1351 LQAQITYY----------VEEIETAEAESEGAVD---YWVVAK---------------DP 1382
Query: 272 PKALGDVFEA 281
PK L D+ EA
Sbjct: 1383 PKCLPDMVEA 1392
>sp|Q7M840|RNC_WOLSU Ribonuclease 3 OS=Wolinella succinogenes (strain ATCC 29543 / DSM
1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=rnc PE=3
SV=1
Length = 238
Score = 78.6 bits (192), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
+ EKR+ Y FQ+K+ L++AL+H +Y + + +RLEFLGDA++D ++ +L+ F
Sbjct: 6 EFEKRLGYRFQNKNLLIEALTHKSY---KKPYNNERLEFLGDAVLDLVIGEFLFLKFPKA 62
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
GE+S +R+++VN FA A R+ L +H+
Sbjct: 63 DEGELSKMRASLVNEKGFAKLAERVSLGRHIF 94
>sp|Q4WA22|DCL2_ASPFU Dicer-like protein 2 OS=Neosartorya fumigata (strain ATCC MYA-4609 /
Af293 / CBS 101355 / FGSC A1100) GN=dcl2 PE=3 SV=2
Length = 1388
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/149 (33%), Positives = 84/149 (56%), Gaps = 12/149 (8%)
Query: 40 KLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPE 99
++ KV+ADVVE+L G G A ++ LP+ I++H +V PE
Sbjct: 1037 QMSTKVLADVVEALIGAAYVDGGHSTAQACIR--RFLPE--INLHAVDTRTAARSV-APE 1091
Query: 100 QARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAII 159
AR + R L+ I YTF+D+S L++AL+HP+ + + T SYQRLE+LGDA++
Sbjct: 1092 SARHMMNDR-------LKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVL 1144
Query: 160 DFLVTAYLYENFSHLSPGEISDIRSAMVN 188
D ++ + ++ + G+++ I+ A+VN
Sbjct: 1145 DMVIVSAIFNHRIQRPQGDMTKIKHAVVN 1173
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 11/120 (9%)
Query: 121 NYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEIS 180
+ +F+ ++ A+S P A+R+T +YQR EFLGD+I+ F V+ L+ + G +S
Sbjct: 929 DVSFKSTDHIITAISTPL--AHRLT-NYQRYEFLGDSILKFSVSCQLFFQHPNWHEGYLS 985
Query: 181 DIRSAMVNNVTFASYAVRLDLHKHLL--------HDSPRLYENVTRFAQNQEARNHEISD 232
+ R +V N A A+ L +++ +P + E + R ++ ++D
Sbjct: 986 EGRDMIVQNPRLAKAALDTGLDAYIVTKRLASRKWSAPLISEKLGRVPAKRQMSTKVLAD 1045
>sp|Q2H0G2|DCL1_CHAGB Dicer-like protein 1 OS=Chaetomium globosum (strain ATCC 6205 / CBS
148.51 / DSM 1962 / NBRC 6347 / NRRL 1970) GN=DCL1 PE=3
SV=2
Length = 1607
Score = 76.3 bits (186), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/257 (27%), Positives = 106/257 (41%), Gaps = 29/257 (11%)
Query: 41 LGDKVVADVVESLTGV-YLRS---------CGIEGAMLFLQALNILPQSKIDVHEALYGP 90
L DK +ADV E+L G YL + I + ++ N S D + A Y P
Sbjct: 1198 LADKTIADVCEALIGAAYLTAQEQTPPNFDLAIRAVTVMVKDKNHTMTSYSDYYAA-YSP 1256
Query: 91 HPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTY-NANRITTSYQ 149
P+ P + LD + E R+ Y F L A HPTY + SYQ
Sbjct: 1257 -PAWQTAPCNSTQLD------MAARFEARMGYAFTHPRLLRSAFQHPTYPSVYEKLPSYQ 1309
Query: 150 RLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDS 209
RLEFLGDA++D +L+ F P +++ + AMV+N AV L H+ + + +
Sbjct: 1310 RLEFLGDALLDMASVEFLFHRFPGADPQWLTEHKMAMVSNQFLGCLAVYLGFHRAISYCA 1369
Query: 210 PRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLI-EEKDVQTDVYGR--VV 266
+ + +T + EI D + ++ C D+ + + R V
Sbjct: 1370 SAIQKEITEYVT-------EIEDALQSARDDASKTPCNRHATTPSPGDLPAESFARDFWV 1422
Query: 267 EYVDVPKALGDVFEALV 283
PK L DV EA V
Sbjct: 1423 RCSRPPKCLPDVVEAYV 1439
>sp|Q1RHA2|RNC_RICBR Ribonuclease 3 OS=Rickettsia bellii (strain RML369-C) GN=rnc PE=3
SV=1
Length = 227
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 19/119 (15%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPT------YNANRITTSYQRLEFLGDAIIDFLVTAYLY 168
+LEK ++Y+F++K+ L +ALSHP+ Y AN+ Y+RLEFLGDA+++ ++T L+
Sbjct: 6 ELEKLLDYSFKNKALLTEALSHPSLRQHHEYKANK---DYERLEFLGDAVLNLIITEILF 62
Query: 169 ENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL----------HDSPRLYENVT 217
NF + G ++ IRS +V T +L L +++ D+P ENVT
Sbjct: 63 NNFKEYNEGNLAKIRSYLVCKETICVVGAKLGLKNYIIMTHGEEIAGGRDNPNNIENVT 121
>sp|A8GYE2|RNC_RICB8 Ribonuclease 3 OS=Rickettsia bellii (strain OSU 85-389) GN=rnc PE=3
SV=1
Length = 227
Score = 76.3 bits (186), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%), Gaps = 19/119 (15%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPT------YNANRITTSYQRLEFLGDAIIDFLVTAYLY 168
+LEK ++Y+F++K+ L +ALSHP+ Y AN+ Y+RLEFLGDA+++ ++T L+
Sbjct: 6 ELEKLLDYSFKNKALLTEALSHPSLRQHHEYKANK---DYERLEFLGDAVLNLIITEILF 62
Query: 169 ENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL----------HDSPRLYENVT 217
NF + G ++ IRS +V T +L L +++ D+P ENVT
Sbjct: 63 NNFKEYNEGNLAKIRSYLVCKETICVVGAKLGLKNYIIMTHGEEIAGGRDNPNNIENVT 121
>sp|Q0CW42|DCL1_ASPTN Dicer-like protein 1 OS=Aspergillus terreus (strain NIH 2624 / FGSC
A1156) GN=dcl1 PE=3 SV=2
Length = 1519
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 92/181 (50%), Gaps = 3/181 (1%)
Query: 41 LGDKVVADVVESLTGVYLRSCGIEGAM-LFLQALNILPQSKIDVHEALYGPHPSAVRCPE 99
L +K +ADV E+L G L + G + + ++A++ + S + + A + + S P+
Sbjct: 1163 LAEKTIADVCEALIGAALLTPGPQHRFDMGVRAVSAVVDSN-EHNAASWRDYISLYSIPK 1221
Query: 100 QARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTY-NANRITTSYQRLEFLGDAI 158
I C ++E+++ Y F+ L A +HP+Y +A YQ LEFLGDA+
Sbjct: 1222 YQEQAPDGSEIDLCRRVEEKLGYHFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDAL 1281
Query: 159 IDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTR 218
+D + L+ F P +++ + AMV+N + AV+L LH HL + S L +T
Sbjct: 1282 LDMVCVEDLFRRFPDRDPQWLTEHKMAMVSNKFLGALAVKLGLHTHLSYFSSALQSQITH 1341
Query: 219 F 219
+
Sbjct: 1342 Y 1342
>sp|B0TXH8|RNC_FRAP2 Ribonuclease 3 OS=Francisella philomiragia subsp. philomiragia
(strain ATCC 25017) GN=rnc PE=3 SV=1
Length = 230
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 64/97 (65%), Gaps = 4/97 (4%)
Query: 110 IPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYE 169
+PE ++L K + Y+F++ + L++AL+H + + +Y+RLEFLGD+I+ F++ LY
Sbjct: 2 VPEYSRLYKILGYSFKNYTLLVRALTHRS----KTKKNYERLEFLGDSILGFVIAEVLYM 57
Query: 170 NFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
F L+ G++S IRS +V VT A+ A+ L ++++
Sbjct: 58 EFPDLAEGKLSQIRSKLVKGVTLANLALNFKLDEYII 94
>sp|Q7VW39|RNC_BORPE Ribonuclease 3 OS=Bordetella pertussis (strain Tohama I / ATCC
BAA-589 / NCTC 13251) GN=rnc PE=3 SV=1
Length = 256
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Query: 116 LEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLS 175
LE R+++ F DK+ L QAL+H ++ A +RLEFLGD++++F+V A L+E + L
Sbjct: 9 LETRLDHRFGDKALLEQALTHRSHGARH----NERLEFLGDSVLNFVVAAMLFERYGKLD 64
Query: 176 PGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
G++S +R+ +V + A A RLDL ++L
Sbjct: 65 EGDLSRLRANLVKQASLADIAQRLDLSQYL 94
>sp|Q7W5J6|RNC_BORPA Ribonuclease 3 OS=Bordetella parapertussis (strain 12822 / ATCC
BAA-587 / NCTC 13253) GN=rnc PE=3 SV=1
Length = 256
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Query: 116 LEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLS 175
LE R+++ F DK+ L QAL+H ++ A +RLEFLGD++++F+V A L+E + L
Sbjct: 9 LETRLDHRFGDKALLEQALTHRSHGARH----NERLEFLGDSVLNFVVAAMLFERYGKLD 64
Query: 176 PGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
G++S +R+ +V + A A RLDL ++L
Sbjct: 65 EGDLSRLRANLVKQASLADIAQRLDLSQYL 94
>sp|Q7WD32|RNC_BORBR Ribonuclease 3 OS=Bordetella bronchiseptica (strain ATCC BAA-588 /
NCTC 13252 / RB50) GN=rnc PE=3 SV=1
Length = 256
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 59/90 (65%), Gaps = 4/90 (4%)
Query: 116 LEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLS 175
LE R+++ F DK+ L QAL+H ++ A +RLEFLGD++++F+V A L+E + L
Sbjct: 9 LETRLDHRFGDKALLEQALTHRSHGARH----NERLEFLGDSVLNFVVAAMLFERYGKLD 64
Query: 176 PGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
G++S +R+ +V + A A RLDL ++L
Sbjct: 65 EGDLSRLRANLVKQASLADIAQRLDLSQYL 94
>sp|Q5HSF8|RNC_CAMJR Ribonuclease 3 OS=Campylobacter jejuni (strain RM1221) GN=rnc PE=3
SV=1
Length = 224
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Query: 110 IPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYE 169
+ +LE+ + Y F+DK+ L+ AL+H ++ + + + +RLEFLGDA++D +V YL+
Sbjct: 1 MKNIEKLERSLTYEFKDKNLLIHALTHKSF---KKSYNNERLEFLGDAVLDLVVGEYLFH 57
Query: 170 NFSHLSPGEISDIRSAMVNNVTFASYAVRLDL 201
F+ + G++S +R+A+VN +FA A L+L
Sbjct: 58 KFAKDAEGDLSKLRAALVNEKSFAKIANSLNL 89
>sp|Q9PM40|RNC_CAMJE Ribonuclease 3 OS=Campylobacter jejuni subsp. jejuni serotype O:2
(strain NCTC 11168) GN=rnc PE=1 SV=1
Length = 224
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 62/92 (67%), Gaps = 3/92 (3%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
+LE+ + Y F+DK+ L+ AL+H ++ + + + +RLEFLGDA++D +V YL+ F+
Sbjct: 6 KLEQSLTYEFKDKNLLIHALTHKSF---KKSYNNERLEFLGDAVLDLVVGEYLFHKFAKD 62
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
+ G++S +R+A+VN +FA A L+L +L
Sbjct: 63 AEGDLSKLRAALVNEKSFAKIANSLNLGDFIL 94
>sp|A8Z6F6|RNC_CAMC1 Ribonuclease 3 OS=Campylobacter concisus (strain 13826) GN=rnc PE=3
SV=1
Length = 223
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
+ E+ + Y F+ L +AL+H + + + +RLEFLGDA++D LV YL++ FS +
Sbjct: 6 EFERNLGYKFKKSELLEEALTHKS---TKQALNNERLEFLGDAVMDLLVAEYLFKKFSKI 62
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
+ G++S +R+A+VN +FA+ A RL + + L
Sbjct: 63 AEGDMSKLRAALVNEKSFANMARRLKMGEFL 93
>sp|A7H5Y2|RNC_CAMJD Ribonuclease 3 OS=Campylobacter jejuni subsp. doylei (strain ATCC
BAA-1458 / RM4099 / 269.97) GN=rnc PE=3 SV=1
Length = 225
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Query: 110 IPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYE 169
+ +LE+ + Y F+DK+ L+ AL+H ++ + + + +RLEFLGDA++D +V YL+
Sbjct: 1 MKNIEKLEQSLTYEFKDKNLLIHALTHKSF---KKSYNNERLEFLGDAVLDLVVGEYLFH 57
Query: 170 NFSHLSPGEISDIRSAMVNNVTFASYAVRLDL 201
F+ + G++S +R+A+VN +FA A L+L
Sbjct: 58 KFTKDAEGDLSKLRAALVNEKSFAKIANSLNL 89
>sp|A8FNU7|RNC_CAMJ8 Ribonuclease 3 OS=Campylobacter jejuni subsp. jejuni serotype O:6
(strain 81116 / NCTC 11828) GN=rnc PE=3 SV=1
Length = 224
Score = 74.3 bits (181), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
+LE+ + Y F+DK+ L+ AL+H ++ + + + +RLEFLGDA++D +V YL+ F+
Sbjct: 6 KLEQSLTYEFKDKNLLIHALTHKSF---KKSYNNERLEFLGDAVLDLVVGEYLFHKFAKD 62
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDL 201
+ G++S +R+A+VN +FA A L+L
Sbjct: 63 AEGDLSKLRAALVNEKSFAKIANSLNL 89
>sp|Q68XY5|RNC_RICTY Ribonuclease 3 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rnc PE=3 SV=1
Length = 227
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 66/116 (56%), Gaps = 13/116 (11%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPT---YNANRITTSYQRLEFLGDAIIDFLVTAYLYENF 171
+LE + Y+F++K L++ALSHP+ Y+ + Y+RLEFLGDA+++ L+T L++NF
Sbjct: 6 KLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEILFKNF 65
Query: 172 SHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL----------HDSPRLYENVT 217
+ G ++ IRS +V T +L L +++ D+P ENVT
Sbjct: 66 ENYKEGNLAKIRSYLVCKETICIVGTKLALKDYIIMTHGEEVAGGRDNPNNIENVT 121
>sp|Q2VF18|DCL2_CRYPA Dicer-like protein 2 OS=Cryphonectria parasitica GN=DCL-2 PE=3 SV=1
Length = 1451
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 81/153 (52%), Gaps = 19/153 (12%)
Query: 41 LGDKVVADVVESLTGVYLRSCGIEGAM----LFLQALNILPQSKIDVHEALYGP-HPSAV 95
L K +ADVVE+L GV G+ A+ LF+ P S +V + L+G P +
Sbjct: 1090 LSPKTLADVVEALIGVSFVDGGLPKALECIRLFIPESQPRPFS--EVRDILFGAAEPKGM 1147
Query: 96 RCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLG 155
+ P + LE+ I Y+F +K+ L++A++HP+YN + Y RLEF+G
Sbjct: 1148 KLPA------------DLQLLEQLIEYSFCEKALLVEAVTHPSYNVSGTVACYDRLEFIG 1195
Query: 156 DAIIDFLVTAYLYENFSHLSPGEISDIRSAMVN 188
DAI+D+++ ++ L ++ +R+A+VN
Sbjct: 1196 DAILDYIIVEEVFALEPALENWQMHLLRTALVN 1228
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 128 SFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMV 187
S L++A+ + R +Y+R+EFLGD+I+ +T L HL G +S ++ +V
Sbjct: 985 SMLVEAICA---KSARTPENYERIEFLGDSILKTCITVNLAATKLHLPEGILSLMKDRLV 1041
Query: 188 NNVTFASYAVRLDLHKHLL 206
+N A +L + L+
Sbjct: 1042 SNARLCRAACDAELDQFLV 1060
>sp|A7NGC5|RNC_ROSCS Ribonuclease 3 OS=Roseiflexus castenholzii (strain DSM 13941 /
HLO8) GN=rnc PE=3 SV=1
Length = 234
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 57/97 (58%), Gaps = 5/97 (5%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITT-----SYQRLEFLGDAIIDFLVTAYLYE 169
+L R++ TF D+ L QAL+H ++ R+ S +RLEFLGDAI++FL T ++E
Sbjct: 7 ELCARLDVTFSDQRLLWQALTHRSFLNERVDERLSLFSNERLEFLGDAIVNFLATTLVFE 66
Query: 170 NFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
F G ++ R+A++ T AS+A R DL H L
Sbjct: 67 RFPDAGEGYLTAWRAALIRTETLASFARRYDLGSHTL 103
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,589,424
Number of Sequences: 539616
Number of extensions: 4564692
Number of successful extensions: 32022
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 30796
Number of HSP's gapped (non-prelim): 823
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)