Query psy3979
Match_columns 286
No_of_seqs 288 out of 1803
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 22:10:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3979.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3979hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12371 ribonuclease III; Rev 100.0 9.8E-31 2.1E-35 237.6 12.4 97 112-209 11-107 (235)
2 COG0571 Rnc dsRNA-specific rib 100.0 1.1E-30 2.3E-35 237.0 11.1 101 111-211 6-107 (235)
3 PRK12372 ribonuclease III; Rev 100.0 3.1E-30 6.6E-35 247.7 11.1 93 113-209 3-95 (413)
4 PRK14718 ribonuclease III; Pro 100.0 8.5E-30 1.8E-34 246.2 10.9 94 113-210 3-96 (467)
5 PRK00102 rnc ribonuclease III; 100.0 6.8E-29 1.5E-33 222.8 11.8 98 112-209 4-102 (229)
6 TIGR02191 RNaseIII ribonucleas 99.9 5.5E-28 1.2E-32 215.3 10.7 94 116-209 1-96 (220)
7 KOG1817|consensus 99.9 8.6E-25 1.9E-29 209.0 13.2 163 43-209 204-372 (533)
8 PF14622 Ribonucleas_3_3: Ribo 99.9 5.7E-26 1.2E-30 188.0 3.9 81 126-208 1-81 (128)
9 cd00593 RIBOc RIBOc. Ribonucle 99.9 3.6E-24 7.8E-29 175.7 9.5 84 128-211 1-84 (133)
10 smart00535 RIBOc Ribonuclease 99.9 4.4E-24 9.5E-29 174.9 9.3 80 128-209 1-80 (129)
11 PF00636 Ribonuclease_3: Ribon 99.9 5.7E-24 1.2E-28 171.2 3.5 109 149-286 1-109 (114)
12 KOG0701|consensus 99.9 9.6E-24 2.1E-28 228.0 4.6 218 23-286 1296-1513(1606)
13 KOG0701|consensus 99.6 1E-15 2.2E-20 166.4 5.5 209 37-285 1142-1359(1606)
14 KOG1817|consensus 99.3 3.3E-12 7.1E-17 123.2 6.4 99 111-209 41-193 (533)
15 KOG3769|consensus 98.1 1.9E-05 4.1E-10 73.9 10.1 99 111-210 63-178 (333)
16 PF14622 Ribonucleas_3_3: Ribo 98.0 4.1E-06 8.9E-11 69.2 3.8 36 38-73 88-123 (128)
17 cd00593 RIBOc RIBOc. Ribonucle 98.0 7.3E-06 1.6E-10 66.8 4.7 35 39-73 89-123 (133)
18 PRK12371 ribonuclease III; Rev 97.9 1.5E-05 3.2E-10 72.8 4.4 31 43-73 118-148 (235)
19 smart00535 RIBOc Ribonuclease 97.8 3.1E-05 6.8E-10 63.0 4.5 32 41-72 89-120 (129)
20 COG0571 Rnc dsRNA-specific rib 97.7 3.1E-05 6.8E-10 70.8 4.4 32 42-73 115-147 (235)
21 PF00636 Ribonuclease_3: Ribon 97.7 1.8E-05 4E-10 63.3 1.9 25 38-62 90-114 (114)
22 PRK12372 ribonuclease III; Rev 97.6 5.4E-05 1.2E-09 74.0 4.4 33 41-73 104-136 (413)
23 PRK14718 ribonuclease III; Pro 97.6 5.5E-05 1.2E-09 74.6 4.4 32 41-72 104-135 (467)
24 TIGR02191 RNaseIII ribonucleas 97.6 7.5E-05 1.6E-09 66.5 4.5 33 41-73 105-137 (220)
25 PRK00102 rnc ribonuclease III; 97.6 8.2E-05 1.8E-09 66.8 4.5 33 41-73 111-143 (229)
26 COG1939 Ribonuclease III famil 95.0 0.063 1.4E-06 44.8 5.7 47 149-196 16-62 (132)
27 PRK14741 spoVM stage V sporula 77.9 0.96 2.1E-05 27.1 0.6 18 268-285 5-22 (26)
28 PF08383 Maf_N: Maf N-terminal 60.7 3.6 7.8E-05 26.7 0.5 18 39-56 14-35 (35)
29 COG1939 Ribonuclease III famil 59.3 13 0.00028 31.2 3.7 29 45-73 98-126 (132)
30 PRK02287 hypothetical protein; 54.8 14 0.00031 32.4 3.4 26 48-73 108-133 (171)
31 PF11469 Ribonucleas_3_2: Ribo 46.7 62 0.0013 26.4 5.5 61 150-220 2-69 (120)
32 PF04034 DUF367: Domain of unk 42.6 27 0.00059 29.2 3.1 26 48-73 67-92 (127)
33 PF08183 SpoV: Stage V sporula 37.6 13 0.00029 22.5 0.4 19 267-285 4-22 (26)
34 PF01418 HTH_6: Helix-turn-hel 35.9 25 0.00054 26.2 1.7 43 163-205 21-64 (77)
35 COG2042 Uncharacterized conser 30.3 53 0.0011 28.9 3.0 27 46-72 114-140 (179)
36 PF13812 PPR_3: Pentatricopept 22.3 1.7E+02 0.0037 16.9 4.0 26 48-73 2-27 (34)
37 TIGR03412 iscX_yfhJ FeS assemb 21.3 1.1E+02 0.0023 22.6 2.8 26 162-187 7-34 (63)
38 PF13936 HTH_38: Helix-turn-he 20.6 1E+02 0.0022 20.4 2.5 33 171-203 2-34 (44)
No 1
>PRK12371 ribonuclease III; Reviewed
Probab=99.97 E-value=9.8e-31 Score=237.57 Aligned_cols=97 Identities=35% Similarity=0.506 Sum_probs=91.8
Q ss_pred hHHHHHHHhCCCcCChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHH
Q psy3979 112 ECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVT 191 (286)
Q Consensus 112 ~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~ 191 (286)
.+..||+++||+|+|+.||.+||||+|+... ...+|||||||||+||+++|+.+||.+||+.++|.||.+|+.+|||.+
T Consensus 11 ~~~~le~~lgy~F~~~~Ll~~AlTH~S~~~~-~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~~ 89 (235)
T PRK12371 11 TASILEERTGHRFANKERLERALTHSSARAS-KQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAET 89 (235)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHcCcCcccC-CccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChHH
Confidence 4788999999999999999999999999764 346999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchhhhccCC
Q psy3979 192 FASYAVRLDLHKHLLHDS 209 (286)
Q Consensus 192 LA~ia~~lgL~~~I~~~s 209 (286)
|+.+|.++||++||+.++
T Consensus 90 La~ia~~lgL~~~i~~~~ 107 (235)
T PRK12371 90 CAAIADEIGLHDLIRTGS 107 (235)
T ss_pred HHHHHHHCCcHHHhccCc
Confidence 999999999999999875
No 2
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.97 E-value=1.1e-30 Score=236.95 Aligned_cols=101 Identities=37% Similarity=0.644 Sum_probs=94.5
Q ss_pred hhHHHHHHHhCCCcCChHHHHHHhhCCCCCCCC-CCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhch
Q psy3979 111 PECTQLEKRINYTFQDKSFLLQALSHPTYNANR-ITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNN 189 (286)
Q Consensus 111 ~~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~-~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN 189 (286)
..+..+++.+||+|+|+.||.+||||+||.++. ...+||||||||||||+++|+++||++||+.++|.||.+|+.+||+
T Consensus 6 ~~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~ 85 (235)
T COG0571 6 KKLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSE 85 (235)
T ss_pred HHHHHHHHHhCCCcCCHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 347889999999999999999999999998753 4579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhhhccCCch
Q psy3979 190 VTFASYAVRLDLHKHLLHDSPR 211 (286)
Q Consensus 190 ~~LA~ia~~lgL~~~I~~~s~~ 211 (286)
.+|+.+|..+||++||+.++++
T Consensus 86 ~~La~ia~~l~l~~~l~lg~ge 107 (235)
T COG0571 86 ESLAEIARELGLGDYLRLGKGE 107 (235)
T ss_pred HHHHHHHHHhCccchhhccCCh
Confidence 9999999999999999988754
No 3
>PRK12372 ribonuclease III; Reviewed
Probab=99.96 E-value=3.1e-30 Score=247.70 Aligned_cols=93 Identities=34% Similarity=0.614 Sum_probs=88.7
Q ss_pred HHHHHHHhCCCcCChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHH
Q psy3979 113 CTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTF 192 (286)
Q Consensus 113 l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~L 192 (286)
++.||++|||+|+|+.||.+||||+||.. .+|||||||||+||+++|+.+||++||++++|.||.+|+.+|||.+|
T Consensus 3 l~~LEk~LGY~Fkn~~LL~eALTH~Sy~~----~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tL 78 (413)
T PRK12372 3 LSQLESRLRYEFRNAELLRQALTHRSHSA----THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (413)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhcccccc----ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHH
Confidence 56899999999999999999999999864 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchhhhccCC
Q psy3979 193 ASYAVRLDLHKHLLHDS 209 (286)
Q Consensus 193 A~ia~~lgL~~~I~~~s 209 (286)
+.+|.++||++||+++.
T Consensus 79 A~IA~~LgL~~~Lrlg~ 95 (413)
T PRK12372 79 YEIAQALNISEGLRLGE 95 (413)
T ss_pred HHHHHHcCchHhhhcCc
Confidence 99999999999998765
No 4
>PRK14718 ribonuclease III; Provisional
Probab=99.96 E-value=8.5e-30 Score=246.18 Aligned_cols=94 Identities=34% Similarity=0.599 Sum_probs=89.2
Q ss_pred HHHHHHHhCCCcCChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHH
Q psy3979 113 CTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTF 192 (286)
Q Consensus 113 l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~L 192 (286)
+..||++|||+|+|+.||.+||||+||.. .+|||||||||+||+++|+.+||++||++++|.||.+|+.+|||.+|
T Consensus 3 l~~LEkrLGY~Fkn~~LL~eALTH~Sys~----e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetL 78 (467)
T PRK14718 3 LSQLESRLRYEFRNAELLRQALTHRSHSA----THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (467)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccCcCc----ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHH
Confidence 56899999999999999999999999864 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCchhhhccCCc
Q psy3979 193 ASYAVRLDLHKHLLHDSP 210 (286)
Q Consensus 193 A~ia~~lgL~~~I~~~s~ 210 (286)
+.+|+++||++||+.+..
T Consensus 79 A~IAr~LGL~d~Lrlg~g 96 (467)
T PRK14718 79 YEIAQALNISDGLRLGEG 96 (467)
T ss_pred HHHHHHcCchHHHhhCCc
Confidence 999999999999987653
No 5
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.96 E-value=6.8e-29 Score=222.83 Aligned_cols=98 Identities=37% Similarity=0.700 Sum_probs=91.8
Q ss_pred hHHHHHHHhCCCcCChHHHHHHhhCCCCCCC-CCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchH
Q psy3979 112 ECTQLEKRINYTFQDKSFLLQALSHPTYNAN-RITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNV 190 (286)
Q Consensus 112 ~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~-~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~ 190 (286)
.++.||++|||+|+|+.|+.+||||||+... ....+|||||||||+||+++++.++|.+||+.++|.|+.+|+.+|||.
T Consensus 4 ~~~~l~~~lg~~f~~~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn~ 83 (229)
T PRK00102 4 DLEELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREE 83 (229)
T ss_pred hHHHHHHHhCCCCCCHHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHH
Confidence 4788999999999999999999999999652 245799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhhhccCC
Q psy3979 191 TFASYAVRLDLHKHLLHDS 209 (286)
Q Consensus 191 ~LA~ia~~lgL~~~I~~~s 209 (286)
+|+.+|.++||++||++++
T Consensus 84 ~la~~a~~lgl~~~i~~~~ 102 (229)
T PRK00102 84 SLAEIARELGLGEYLLLGK 102 (229)
T ss_pred HHHHHHHHCCcHHHHccCc
Confidence 9999999999999998875
No 6
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.95 E-value=5.5e-28 Score=215.29 Aligned_cols=94 Identities=44% Similarity=0.748 Sum_probs=88.3
Q ss_pred HHHHhCCCcCChHHHHHHhhCCCCCCC--CCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHHH
Q psy3979 116 LEKRINYTFQDKSFLLQALSHPTYNAN--RITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFA 193 (286)
Q Consensus 116 le~~LGY~Fk~~~LL~eALTH~S~~~~--~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~LA 193 (286)
||++|||+|+|+.|+.+||||||+... ....+|||||||||+||++++++++|.+||+.++|.|+.+|+.+|||.+|+
T Consensus 1 ~e~~lgy~F~~~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la 80 (220)
T TIGR02191 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLA 80 (220)
T ss_pred ChHHhCCCcCCHHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHH
Confidence 589999999999999999999998753 235699999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCchhhhccCC
Q psy3979 194 SYAVRLDLHKHLLHDS 209 (286)
Q Consensus 194 ~ia~~lgL~~~I~~~s 209 (286)
.+|.++||+++|+.++
T Consensus 81 ~~a~~~gl~~~i~~~~ 96 (220)
T TIGR02191 81 EVARELGLGKFLLLGK 96 (220)
T ss_pred HHHHHCCcHHHhccCc
Confidence 9999999999998775
No 7
>KOG1817|consensus
Probab=99.92 E-value=8.6e-25 Score=209.02 Aligned_cols=163 Identities=26% Similarity=0.334 Sum_probs=122.9
Q ss_pred chhHHHHHHHHHHHHHhhCChHHHHHHHHH-hcc-CCCCchhHHhhhcCCCCCCCCCccccc---CCCCCCCchhHHHHH
Q psy3979 43 DKVVADVVESLTGVYLRSCGIEGAMLFLQA-LNI-LPQSKIDVHEALYGPHPSAVRCPEQAR---GLDPLRYIPECTQLE 117 (286)
Q Consensus 43 ~k~lADv~EAliGA~~l~~G~~~a~~~~~~-~~i-~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~l~~le 117 (286)
...+|||+||+|||.|++||+..+...... +-. .|.-...|...- ..+.+.. .|..++ ..-| ....+.++|
T Consensus 204 Kha~an~feavi~a~~l~g~~~~~e~lfs~~~~~~epvlee~w~~~~-ehelq~~-ep~gDr~~~~~~P--pllp~~~~e 279 (533)
T KOG1817|consen 204 KHAMANCFEAVIGAKYLDGGLVVAEKLFSRALFVYEPVLEEEWEHEP-EHELQEQ-EPAGDRVLITKYP--PLLPLTQFE 279 (533)
T ss_pred HHHHHHHHHHHhHHHHHhcchHHHHHHHHHHhhccCchhhccccCCC-cCccccc-CCCccccccccCC--CCCchhhHH
Confidence 347899999999999999999988877633 221 221112222211 0000111 121111 1111 112367899
Q ss_pred HHhCCCcCChHHHHHHhhCCCCCCCC-CCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHHHHHH
Q psy3979 118 KRINYTFQDKSFLLQALSHPTYNANR-ITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYA 196 (286)
Q Consensus 118 ~~LGY~Fk~~~LL~eALTH~S~~~~~-~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~LA~ia 196 (286)
+++|..|.+++++.+|+|-+|...+. ...+|||||||||+||++++|+++|.+||+.++|+||.+|+.+|||++-+.+|
T Consensus 280 ~~~g~vF~Hirlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva 359 (533)
T KOG1817|consen 280 EIIGIVFIHIRLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVA 359 (533)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHH
Confidence 99999999999999999999987542 45799999999999999999999999999999999999999999999999999
Q ss_pred HHcCchhhhccCC
Q psy3979 197 VRLDLHKHLLHDS 209 (286)
Q Consensus 197 ~~lgL~~~I~~~s 209 (286)
..+|+++|+..+.
T Consensus 360 ~~lgf~e~li~n~ 372 (533)
T KOG1817|consen 360 DDLGFHEYLITNF 372 (533)
T ss_pred HHhCCchhhhhCc
Confidence 9999999997764
No 8
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.92 E-value=5.7e-26 Score=188.02 Aligned_cols=81 Identities=38% Similarity=0.644 Sum_probs=70.6
Q ss_pred ChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHHHHHHHHcCchhhh
Q psy3979 126 DKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205 (286)
Q Consensus 126 ~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~LA~ia~~lgL~~~I 205 (286)
|+.|+.+||||+||... ...+|||||||||+||++++++++|+++| .++|.++++|+.+|++++|+.+|.++||+++|
T Consensus 1 ~~~Ll~~alTH~S~~~~-~~~~nerLefLGd~vL~~~vs~~l~~~~~-~~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i 78 (128)
T PF14622_consen 1 DDELLLQALTHKSYAHE-RKPNNERLEFLGDAVLGLVVSEYLFQRPP-ADEGELTRLRSNLVSNETLAEIAKQLGLDKLI 78 (128)
T ss_dssp SHHHHHHHTB-HHHHHH-TCB-SHHHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-
T ss_pred CHHHHHHHhcCcccccc-ccCccHHHHHHHHHHHHHHHHHHHHhCcC-ccchHHHHHHHHHhChHHHHHHHHHCCHHHHH
Confidence 68999999999999753 35899999999999999999999999955 48999999999999999999999999999999
Q ss_pred ccC
Q psy3979 206 LHD 208 (286)
Q Consensus 206 ~~~ 208 (286)
+.+
T Consensus 79 ~~~ 81 (128)
T PF14622_consen 79 RWG 81 (128)
T ss_dssp B--
T ss_pred HhC
Confidence 883
No 9
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.91 E-value=3.6e-24 Score=175.65 Aligned_cols=84 Identities=43% Similarity=0.699 Sum_probs=77.7
Q ss_pred HHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHHHHHHHHcCchhhhcc
Q psy3979 128 SFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLH 207 (286)
Q Consensus 128 ~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~LA~ia~~lgL~~~I~~ 207 (286)
.|+.+||||+|+.......+|||||||||+||+++++.++|.++|+.++|.++.+|+.+|||++|+.+|.++||+++++.
T Consensus 1 ~ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~ 80 (133)
T cd00593 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRL 80 (133)
T ss_pred CHHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhcc
Confidence 37899999999987533579999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCch
Q psy3979 208 DSPR 211 (286)
Q Consensus 208 ~s~~ 211 (286)
++..
T Consensus 81 ~~~~ 84 (133)
T cd00593 81 GKGE 84 (133)
T ss_pred CchH
Confidence 7643
No 10
>smart00535 RIBOc Ribonuclease III family.
Probab=99.90 E-value=4.4e-24 Score=174.93 Aligned_cols=80 Identities=43% Similarity=0.744 Sum_probs=75.2
Q ss_pred HHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHHHHHHHHcCchhhhcc
Q psy3979 128 SFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLH 207 (286)
Q Consensus 128 ~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~LA~ia~~lgL~~~I~~ 207 (286)
.||.+||||||+..+ ..+|||||||||+||+++++.++|.++|+.++|.|+.+|+.+|||++|+.+|.++||+++++.
T Consensus 1 ~ll~~alth~s~~~~--~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~ 78 (129)
T smart00535 1 SLLLRALTHASYSNE--HEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRL 78 (129)
T ss_pred CHHHHHhhccccccc--CcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHcc
Confidence 379999999999764 269999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q psy3979 208 DS 209 (286)
Q Consensus 208 ~s 209 (286)
++
T Consensus 79 ~~ 80 (129)
T smart00535 79 GR 80 (129)
T ss_pred Cc
Confidence 75
No 11
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.89 E-value=5.7e-24 Score=171.15 Aligned_cols=109 Identities=37% Similarity=0.629 Sum_probs=84.0
Q ss_pred hHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHHHHHHHHcCchhhhccCCchHHHHHHHHHHHHHhhcc
Q psy3979 149 QRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNH 228 (286)
Q Consensus 149 eRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~LA~ia~~lgL~~~I~~~s~~l~~~i~~f~~~~~~~~~ 228 (286)
|||||||||||+++|+.++|.+||+.+||.||.+|+.+|||++|+.+|+++||++|++..+......+..+.+...
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~---- 76 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLN---- 76 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHH----
Confidence 7999999999999999999999999999999999999999999999999999999999887766655554211100
Q ss_pred cCCchhhHHHHhhhHHHHhHHHhhhhcccccccccccccccCCCccchhHHHHHhccC
Q psy3979 229 EISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEALVEDT 286 (286)
Q Consensus 229 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~PK~L~Dv~Esi~GAI 286 (286)
.. .+... ..+. .......||+++|+|||++|||
T Consensus 77 ---~~--------------------~~~~~-~~~~-~~~~~~~~k~laD~~EAliGAi 109 (114)
T PF00636_consen 77 ---NG--------------------DSESS-ISYD-PKNQVLPPKVLADVFEALIGAI 109 (114)
T ss_dssp ----------------------------C--SSS---SSSSHHHHHHHHHHHHHHHHH
T ss_pred ---hc--------------------ccccc-cCCC-ccccCCccHHHHHHHHHHHHHH
Confidence 00 00000 0011 1145567999999999999996
No 12
>KOG0701|consensus
Probab=99.88 E-value=9.6e-24 Score=227.98 Aligned_cols=218 Identities=42% Similarity=0.636 Sum_probs=181.4
Q ss_pred CCCCCCCCCccchhcccccCchhHHHHHHHHHHHHHhhCChHHHHHHHHHhccCCCCchhHHhhhcCCCCCCCCCccccc
Q psy3979 23 SSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQAR 102 (286)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~l~~k~lADv~EAliGA~~l~~G~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~ 102 (286)
.+...+++++++..+.+.+.+|.++|++|+++|+....+|...+.-++.|....- ++.+.. ..+....
T Consensus 1296 ~~~~v~~~l~~~l~~~s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~----~i~es~--------~~~~~~~ 1363 (1606)
T KOG0701|consen 1296 LNVKVPKSLPYNLLDQSSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILL----DIPESI--------ASPDSID 1363 (1606)
T ss_pred cccccCCcceeeehhhccCccchHHHHHHHhhhhhhhccCCCccccccccccccc----cccccc--------cccchhH
Confidence 4445677899999999999999999999999999999999999988886644311 000000 0000000
Q ss_pred CCCCCCCchhHHHHHHHhCCCcCChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHH
Q psy3979 103 GLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDI 182 (286)
Q Consensus 103 ~~~~~~~~~~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~l 182 (286)
.. .....+..+|..+||.|+++.++.+|+||.+|..+..+.|||||||+||+|+++.|++|+|...+..+||.++++
T Consensus 1364 ~~---~~l~~~~~~e~~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~~~~~~~sp~~~td~ 1440 (1606)
T KOG0701|consen 1364 EL---RQLLSFGKFEEKLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYEDPRQHSPGVLTDL 1440 (1606)
T ss_pred HH---HHHHHHHhhhcccchhhhhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhcccccccccCchhhhhh
Confidence 00 111237889999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred HHHhhchHHHHHHHHHcCchhhhccCCchHHHHHHHHHHHHHhhcccCCchhhHHHHhhhHHHHhHHHhhhhcccccccc
Q psy3979 183 RSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVY 262 (286)
Q Consensus 183 rs~lVsN~~LA~ia~~lgL~~~I~~~s~~l~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 262 (286)
|++.|+|...|.+|++.++|+|++..++.+...|.+|+.++.++.+.....
T Consensus 1441 rsa~vnn~~~a~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~~~----------------------------- 1491 (1606)
T KOG0701|consen 1441 RSALVNNTIFASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSLFG----------------------------- 1491 (1606)
T ss_pred hhHhhccccchhhHHhhcchhHHHhhccccccchHHHHHHHHhhccccCCC-----------------------------
Confidence 999999999999999999999999999999999999999988766322221
Q ss_pred cccccccCCCccchhHHHHHhccC
Q psy3979 263 GRVVEYVDVPKALGDVFEALVEDT 286 (286)
Q Consensus 263 ~~~~~~~~~PK~L~Dv~Esi~GAI 286 (286)
+.+.+.+||++||++||++|||
T Consensus 1492 --~~edievpKa~gdi~esiagai 1513 (1606)
T KOG0701|consen 1492 --WEEDIEVPKALGDIFESIAGAI 1513 (1606)
T ss_pred --chhhcccchhhhhhhhccccee
Confidence 4568899999999999999997
No 13
>KOG0701|consensus
Probab=99.58 E-value=1e-15 Score=166.36 Aligned_cols=209 Identities=27% Similarity=0.302 Sum_probs=160.8
Q ss_pred cccccCchhHHHHHHHHHHHHHhhCChHHHH-----HHHHHhccCCCCchhHHhhhcCCCCCCCCCcccccCCCCCCCch
Q psy3979 37 DRIKLGDKVVADVVESLTGVYLRSCGIEGAM-----LFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIP 111 (286)
Q Consensus 37 ~~~~l~~k~lADv~EAliGA~~l~~G~~~a~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 111 (286)
++++...|++||++|||+||+|.|+|...+. .+++|.++.... ++.+..+........+ .. .-..
T Consensus 1142 ~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~lk~~~~~~dy--~~~e~~~~~~~~~~~s----~~----~~~~ 1211 (1606)
T KOG0701|consen 1142 DHDWLAPKSPADLLEALLGAIYVDGGLLETFETIGDSFLKWSITNYDY--DTLEPKHAGKLSFRRS----KI----VKKK 1211 (1606)
T ss_pred ccceecCCCHHHHHHHHHHhhhhhccchhhhhHHHHHHHhhhhhhhhh--hcccccchhhhhhhhh----hH----hhhh
Confidence 4799999999999999999999999998888 888888763210 0000000000000000 00 1112
Q ss_pred hHHHHHHHhCC--CcCChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhc-
Q psy3979 112 ECTQLEKRINY--TFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVN- 188 (286)
Q Consensus 112 ~l~~le~~LGY--~Fk~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVs- 188 (286)
.+.++|+.++| +|....++.+|++|+|.... ...++||++|+||++|+.+++++.|..+....+|.++.+|++-++
T Consensus 1212 ~~~~ler~l~~~~~~~~~~l~~~~~~~~s~~~~-~ld~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~ 1290 (1606)
T KOG0701|consen 1212 NLDRLERELGLKFKFLEAALLVQAFIHCSLRAE-GLDATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNT 1290 (1606)
T ss_pred hHHHHHHhhcccchhhhhhcchhhccccccccc-ccchHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhh
Confidence 47799999999 99999999999999998875 356699999999999999999999999999999999999999999
Q ss_pred -hHHHHHHHHHcCchhhhccCCchHHHHHHHHHHHHHhhcccCCchhhHHHHhhhHHHHhHHHhhhhccccccccccccc
Q psy3979 189 -NVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVE 267 (286)
Q Consensus 189 -N~~LA~ia~~lgL~~~I~~~s~~l~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 267 (286)
|.+++..++...++-+++..+.-+...|..|++.+...- +.+. . | .. ...
T Consensus 1291 l~e~~~~~~v~~~l~~~l~~~s~~~~K~i~d~v~sli~~~-----------------------~~~~-~--~--~s-~l~ 1341 (1606)
T KOG0701|consen 1291 LNENDLNVKVPKSLPYNLLDQSSVLEKSIADSVEALIGAS-----------------------LSEG-G--P--SS-ALL 1341 (1606)
T ss_pred hhhcccccccCCcceeeehhhccCccchHHHHHHHhhhhh-----------------------hhcc-C--C--Cc-ccc
Confidence 999999999999999999999999999999998755421 0111 1 0 00 122
Q ss_pred ccCCCccchhHHHHHhcc
Q psy3979 268 YVDVPKALGDVFEALVED 285 (286)
Q Consensus 268 ~~~~PK~L~Dv~Esi~GA 285 (286)
..+.|+.++|+.|+++++
T Consensus 1342 ~~~~~~~l~~i~es~~~~ 1359 (1606)
T KOG0701|consen 1342 FMDWPPILLDIPESIASP 1359 (1606)
T ss_pred cccccccccccccccccc
Confidence 347899999999998875
No 14
>KOG1817|consensus
Probab=99.29 E-value=3.3e-12 Score=123.22 Aligned_cols=99 Identities=37% Similarity=0.596 Sum_probs=90.4
Q ss_pred hhHHHHHHHhCCCcCChHHHHHHhhCCCCCCC------------------------------------------------
Q psy3979 111 PECTQLEKRINYTFQDKSFLLQALSHPTYNAN------------------------------------------------ 142 (286)
Q Consensus 111 ~~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~------------------------------------------------ 142 (286)
..+.-||+.+||+|+|+.||..||||||+..+
T Consensus 41 ~~l~~~e~~i~y~f~~r~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r~~~yg~~~~~~~~kr~~gin~li~imk~l~ 120 (533)
T KOG1817|consen 41 QSLDHLEELIGYTFQDRCLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQPKYGDRKEHIMTKRKLGINTLINIMKRLG 120 (533)
T ss_pred HhHHHHHHHhCeeecchHHHHHHhcCchHHhhCCCCchhhhccccccCcCCcccchhHHHHHHHHHhhhhHHHHHHhhcc
Confidence 45789999999999999999999999998531
Q ss_pred ------CCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHHHHHHHHcCchhhhccCC
Q psy3979 143 ------RITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDS 209 (286)
Q Consensus 143 ------~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~LA~ia~~lgL~~~I~~~s 209 (286)
.....+||||||||++.+++++.++|..+|...+|.|...|+++|.|..++.++.++.++.|+....
T Consensus 121 ~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklrkd~fl~yah 193 (533)
T KOG1817|consen 121 VIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLRKDEFLLYAH 193 (533)
T ss_pred CCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 0145789999999999999999999999999999999999999999999999999999999998875
No 15
>KOG3769|consensus
Probab=98.11 E-value=1.9e-05 Score=73.86 Aligned_cols=99 Identities=22% Similarity=0.345 Sum_probs=89.9
Q ss_pred hhHHHHHHHhC-CCcCChHHHHHHhhCCCCCCC----------------CCCcchhHHHHhhHHHHHHHHHHHHHHhCCC
Q psy3979 111 PECTQLEKRIN-YTFQDKSFLLQALSHPTYNAN----------------RITTSYQRLEFLGDAIIDFLVTAYLYENFSH 173 (286)
Q Consensus 111 ~~l~~le~~LG-Y~Fk~~~LL~eALTH~S~~~~----------------~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~ 173 (286)
..+..+.++|| -.| ....+..|||.+|+... ....+|+-|--.|-.++++.|+.||-++||.
T Consensus 63 sel~afg~RL~~~~i-s~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPr 141 (333)
T KOG3769|consen 63 SELSAFGKRLQSEEI-SLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYPR 141 (333)
T ss_pred HHHHHHHHHhccccc-cHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 45899999999 666 78899999999998652 1357899999999999999999999999999
Q ss_pred CChhhhHHHHHHhhchHHHHHHHHHcCchhhhccCCc
Q psy3979 174 LSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSP 210 (286)
Q Consensus 174 ~~~g~Lt~lrs~lVsN~~LA~ia~~lgL~~~I~~~s~ 210 (286)
+++..++.+-+.+.+.++||.+|..+|+.++++...-
T Consensus 142 lP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeF 178 (333)
T KOG3769|consen 142 LPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEF 178 (333)
T ss_pred CcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccC
Confidence 9999999999999999999999999999999998753
No 16
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=98.04 E-value=4.1e-06 Score=69.24 Aligned_cols=36 Identities=42% Similarity=0.493 Sum_probs=29.9
Q ss_pred ccccCchhHHHHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 38 RIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 38 ~~~l~~k~lADv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
...-+.|++||++||+|||+|+|+|++.|.+|+..+
T Consensus 88 ~~~~~~~vlad~feAliGAiyld~G~~~a~~~i~~~ 123 (128)
T PF14622_consen 88 GGSGSDKVLADVFEALIGAIYLDSGFEAARKFIQKL 123 (128)
T ss_dssp TGGG-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCCCccHHHhHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 345578899999999999999999999999999554
No 17
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=98.00 E-value=7.3e-06 Score=66.83 Aligned_cols=35 Identities=40% Similarity=0.503 Sum_probs=32.3
Q ss_pred cccCchhHHHHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 39 IKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 39 ~~l~~k~lADv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
...++|.+||+|||+|||+|+++|.+.+.+++.++
T Consensus 89 ~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~ 123 (133)
T cd00593 89 GRLRPKILADVFEALIGAIYLDGGFEAARKFLLRL 123 (133)
T ss_pred CcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999774
No 18
>PRK12371 ribonuclease III; Reviewed
Probab=97.86 E-value=1.5e-05 Score=72.81 Aligned_cols=31 Identities=39% Similarity=0.433 Sum_probs=28.5
Q ss_pred chhHHHHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 43 DKVVADVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 43 ~k~lADv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
.|++||+|||+|||+|+|+|++.|.+|+..+
T Consensus 118 ~~ilad~~EAliGAiylD~G~~~a~~~i~~~ 148 (235)
T PRK12371 118 LNVRADVVEALIAAIYLDGGLEAARPFIQRY 148 (235)
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5899999999999999999999999999543
No 19
>smart00535 RIBOc Ribonuclease III family.
Probab=97.77 E-value=3.1e-05 Score=63.05 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=29.7
Q ss_pred cCchhHHHHHHHHHHHHHhhCChHHHHHHHHH
Q psy3979 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQA 72 (286)
Q Consensus 41 l~~k~lADv~EAliGA~~l~~G~~~a~~~~~~ 72 (286)
.+.|.+||++||+|||+|+++|++.+.+++..
T Consensus 89 ~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~~ 120 (129)
T smart00535 89 DKPSILADVFEALIGAIYLDSGLEAAREFIRD 120 (129)
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 57899999999999999999999999999943
No 20
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=97.73 E-value=3.1e-05 Score=70.79 Aligned_cols=32 Identities=28% Similarity=0.529 Sum_probs=29.4
Q ss_pred CchhHHHHHHHHHHHHHhhCChHHHHHHH-HHh
Q psy3979 42 GDKVVADVVESLTGVYLRSCGIEGAMLFL-QAL 73 (286)
Q Consensus 42 ~~k~lADv~EAliGA~~l~~G~~~a~~~~-~~~ 73 (286)
.++++||++||+|||+|+|+|++.+++|+ +++
T Consensus 115 ~~silaD~~EAligAiylD~g~~~~~~~i~~l~ 147 (235)
T COG0571 115 RESILADAFEALIGAIYLDSGLEAARKFILKLF 147 (235)
T ss_pred chhHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 67999999999999999999999999999 444
No 21
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=97.69 E-value=1.8e-05 Score=63.26 Aligned_cols=25 Identities=40% Similarity=0.488 Sum_probs=23.5
Q ss_pred ccccCchhHHHHHHHHHHHHHhhCC
Q psy3979 38 RIKLGDKVVADVVESLTGVYLRSCG 62 (286)
Q Consensus 38 ~~~l~~k~lADv~EAliGA~~l~~G 62 (286)
.+....|.+||+|||+|||+|+|+|
T Consensus 90 ~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 90 NQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCCccHHHHHHHHHHHHHHHHhcC
Confidence 6778899999999999999999998
No 22
>PRK12372 ribonuclease III; Reviewed
Probab=97.62 E-value=5.4e-05 Score=73.97 Aligned_cols=33 Identities=24% Similarity=0.362 Sum_probs=29.9
Q ss_pred cCchhHHHHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 41 l~~k~lADv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
-++|++||+|||||||+|+|+|++.+..|+..+
T Consensus 104 ~~~kILADvfEALIGAIYLDsG~e~a~~fV~~l 136 (413)
T PRK12372 104 RRPSILADAFEAIIGAVFLDGGFEAAQGVIKRL 136 (413)
T ss_pred CCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 467999999999999999999999999999544
No 23
>PRK14718 ribonuclease III; Provisional
Probab=97.62 E-value=5.5e-05 Score=74.58 Aligned_cols=32 Identities=22% Similarity=0.332 Sum_probs=29.4
Q ss_pred cCchhHHHHHHHHHHHHHhhCChHHHHHHHHH
Q psy3979 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQA 72 (286)
Q Consensus 41 l~~k~lADv~EAliGA~~l~~G~~~a~~~~~~ 72 (286)
.+++++||+|||||||+|+|+|++.+..|+..
T Consensus 104 ~~~sILADvFEALIGAIYLDsG~e~a~~fI~~ 135 (467)
T PRK14718 104 RRPSILADAFEAIIGAVFLDGGFEAAQGVIKR 135 (467)
T ss_pred CChhHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 46799999999999999999999999999954
No 24
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=97.58 E-value=7.5e-05 Score=66.45 Aligned_cols=33 Identities=30% Similarity=0.488 Sum_probs=30.0
Q ss_pred cCchhHHHHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 41 l~~k~lADv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
-++|.+||+|||+|||+|+|+|++.+.+|+..+
T Consensus 105 ~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~ 137 (220)
T TIGR02191 105 RRESILADAFEALIGAIYLDSGLEAARKFILKL 137 (220)
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 357899999999999999999999999999655
No 25
>PRK00102 rnc ribonuclease III; Reviewed
Probab=97.56 E-value=8.2e-05 Score=66.75 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=29.8
Q ss_pred cCchhHHHHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 41 l~~k~lADv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
-++|++||++||+|||+|+|+|++.+.+|+..+
T Consensus 111 ~~~k~~ad~~EA~iGAiyld~g~~~~~~~i~~~ 143 (229)
T PRK00102 111 RRPSILADAFEALIGAIYLDQGLEAARKFILRL 143 (229)
T ss_pred CCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 356899999999999999999999999999665
No 26
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=94.96 E-value=0.063 Score=44.83 Aligned_cols=47 Identities=26% Similarity=0.374 Sum_probs=39.4
Q ss_pred hHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHHHHHH
Q psy3979 149 QRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYA 196 (286)
Q Consensus 149 eRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~LA~ia 196 (286)
=-|+|+||||+++.|-.|+...+.. .|+.|++.-.+.||.+.-|.+-
T Consensus 16 laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il 62 (132)
T COG1939 16 LALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALIL 62 (132)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHH
Confidence 3599999999999999998876433 7999999999999998776554
No 27
>PRK14741 spoVM stage V sporulation protein M; Provisional
Probab=77.91 E-value=0.96 Score=27.11 Aligned_cols=18 Identities=28% Similarity=0.612 Sum_probs=16.5
Q ss_pred ccCCCccchhHHHHHhcc
Q psy3979 268 YVDVPKALGDVFEALVED 285 (286)
Q Consensus 268 ~~~~PK~L~Dv~Esi~GA 285 (286)
.++.||+||-++-+++||
T Consensus 5 tiklpkflgg~vra~l~~ 22 (26)
T PRK14741 5 TIKLPKFLGGIVRAMLGS 22 (26)
T ss_pred EEeccHHHHHHHHHHHHH
Confidence 578999999999999987
No 28
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=60.65 E-value=3.6 Score=26.74 Aligned_cols=18 Identities=28% Similarity=0.481 Sum_probs=12.5
Q ss_pred cccCchhH----HHHHHHHHHH
Q psy3979 39 IKLGDKVV----ADVVESLTGV 56 (286)
Q Consensus 39 ~~l~~k~l----ADv~EAliGA 56 (286)
|.+....+ .|+||||||+
T Consensus 14 Qq~~pe~l~LtpEDAvEaLi~~ 35 (35)
T PF08383_consen 14 QQMNPEALGLTPEDAVEALIGN 35 (35)
T ss_pred hhcChhhcCCCHHHHHHHHhcC
Confidence 44444443 7999999984
No 29
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=59.33 E-value=13 Score=31.22 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 45 VVADVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 45 ~lADv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
..|-.+|||||..||..-.+.-..++.+.
T Consensus 98 r~sTgfEAliGyLyL~~~~eRL~ell~~~ 126 (132)
T COG1939 98 RMSTGFEALIGYLYLTKQEERLEELLNKV 126 (132)
T ss_pred HHhhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 46778999999999999999888888664
No 30
>PRK02287 hypothetical protein; Provisional
Probab=54.78 E-value=14 Score=32.38 Aligned_cols=26 Identities=23% Similarity=0.091 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 48 DVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 48 Dv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
.++||+.+|.|+.|..+.|..++..|
T Consensus 108 s~vEAlAaaLyI~G~~~~A~~ll~~F 133 (171)
T PRK02287 108 SSVEALAAALYILGFKEEAEKILSKF 133 (171)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhhC
Confidence 58999999999999999999998654
No 31
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=46.71 E-value=62 Score=26.38 Aligned_cols=61 Identities=26% Similarity=0.339 Sum_probs=38.9
Q ss_pred HHHHhhHHHHHHHHHHHHHH--hCCCCChhhhHHHHHHhhchHHHHHHHHHcCchhhhc-----cCCchHHHHHHHHH
Q psy3979 150 RLEFLGDAIIDFLVTAYLYE--NFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL-----HDSPRLYENVTRFA 220 (286)
Q Consensus 150 RLEfLGDAVL~~~vs~~Ly~--~~p~~~~g~Lt~lrs~lVsN~~LA~ia~~lgL~~~I~-----~~s~~l~~~i~~f~ 220 (286)
-|.-+||++++++.+--|-+ -+| .| .-|-|.+|+..-..-||.+.++ |+..+..+++-.|+
T Consensus 2 ~Lak~GDSLvNfl~SlALse~lG~P---tg-------~rVPnaSLaiAl~~a~L~~~~~PR~dkh~kGd~aEA~iAyA 69 (120)
T PF11469_consen 2 GLAKFGDSLVNFLFSLALSEYLGRP---TG-------DRVPNASLAIALELAGLSHLLPPRTDKHGKGDIAEALIAYA 69 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS--CGGCCGHHHHHHHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHHHhCCC---CC-------CCCCChHHHHHHHHHhhhhhCcccccccCccHHHHHHHHHH
Confidence 37789999999999987743 333 22 2478899998888999999887 23334455554443
No 32
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=42.57 E-value=27 Score=29.22 Aligned_cols=26 Identities=23% Similarity=0.105 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 48 DVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 48 Dv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
.|+||+.+|.|+.|=.+.|.+++..|
T Consensus 67 scvEAlAAaLyI~G~~~~A~~lL~~F 92 (127)
T PF04034_consen 67 SCVEALAAALYILGFKEQAEELLSKF 92 (127)
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHhcC
Confidence 58999999999999999999998654
No 33
>PF08183 SpoV: Stage V sporulation protein family; InterPro: IPR012609 This family consists of the stage V sporulation (SpoV) proteins of Bacillus subtilis which includes SpoVM. SpoVM is an small, 26 residue-long protein that is produced in the mother cell chamber of the sporangium during the process of sporulation in B. subtilis. SpoVM forms an amphipathic alpha-helix and is recruited to the polar septum shortly after the sporangium undergoes asymmetric division. The function of SpoVM depends on proper subcellular localisation [].
Probab=37.58 E-value=13 Score=22.52 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=16.4
Q ss_pred cccCCCccchhHHHHHhcc
Q psy3979 267 EYVDVPKALGDVFEALVED 285 (286)
Q Consensus 267 ~~~~~PK~L~Dv~Esi~GA 285 (286)
..++.||++|-++-+++++
T Consensus 4 YtIKLpkf~Gg~v~~~L~s 22 (26)
T PF08183_consen 4 YTIKLPKFLGGVVRALLFS 22 (26)
T ss_pred eeeechHHHhHHHHHHHHH
Confidence 3578999999999999886
No 34
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=35.88 E-value=25 Score=26.16 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=26.0
Q ss_pred HHHHHHHhCCCCChhhhHHH-HHHhhchHHHHHHHHHcCchhhh
Q psy3979 163 VTAYLYENFSHLSPGEISDI-RSAMVNNVTFASYAVRLDLHKHL 205 (286)
Q Consensus 163 vs~~Ly~~~p~~~~g~Lt~l-rs~lVsN~~LA~ia~~lgL~~~I 205 (286)
|++|+..+......-.++++ +..-||..++.++|+++|+..|-
T Consensus 21 Ia~yil~~~~~~~~~si~elA~~~~vS~sti~Rf~kkLG~~gf~ 64 (77)
T PF01418_consen 21 IADYILENPDEIAFMSISELAEKAGVSPSTIVRFCKKLGFSGFK 64 (77)
T ss_dssp HHHHHHH-HHHHCT--HHHHHHHCTS-HHHHHHHHHHCTTTCHH
T ss_pred HHHHHHhCHHHHHHccHHHHHHHcCCCHHHHHHHHHHhCCCCHH
Confidence 44555544322222233333 67789999999999999998774
No 35
>COG2042 Uncharacterized conserved protein [Function unknown]
Probab=30.33 E-value=53 Score=28.94 Aligned_cols=27 Identities=15% Similarity=0.000 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHH
Q psy3979 46 VADVVESLTGVYLRSCGIEGAMLFLQA 72 (286)
Q Consensus 46 lADv~EAliGA~~l~~G~~~a~~~~~~ 72 (286)
.=.++||+.+|.|+.|=.+.|..++..
T Consensus 114 kLss~EAlaAaLYI~G~~deA~~lls~ 140 (179)
T COG2042 114 KLSSAEALAAALYIVGFKDEASELLSK 140 (179)
T ss_pred hhchHHHHHHHHHHhCcHHHHHHHHhh
Confidence 346899999999999999999999854
No 36
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=22.33 E-value=1.7e+02 Score=16.90 Aligned_cols=26 Identities=8% Similarity=0.197 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 48 DVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 48 Dv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
..+.++|-|+.-.|..+.|..++..+
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M 27 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEM 27 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 35789999999999999988887543
No 37
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=21.26 E-value=1.1e+02 Score=22.61 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCCChhhh--HHHHHHhh
Q psy3979 162 LVTAYLYENFSHLSPGEI--SDIRSAMV 187 (286)
Q Consensus 162 ~vs~~Ly~~~p~~~~g~L--t~lrs~lV 187 (286)
-|+..|+.+||+.+|-.+ |+||.-+.
T Consensus 7 eIA~~L~e~~pd~dp~~vrFtdL~~wV~ 34 (63)
T TIGR03412 7 EIAIALAEAHPDVDPKTVRFTDLHQWVL 34 (63)
T ss_pred HHHHHHHHHCCCCCcceeeHHHHHHHHH
Confidence 367889999999999886 77776553
No 38
>PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A.
Probab=20.65 E-value=1e+02 Score=20.38 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=15.0
Q ss_pred CCCCChhhhHHHHHHhhchHHHHHHHHHcCchh
Q psy3979 171 FSHLSPGEISDIRSAMVNNVTFASYAVRLDLHK 203 (286)
Q Consensus 171 ~p~~~~g~Lt~lrs~lVsN~~LA~ia~~lgL~~ 203 (286)
|+.+++.+-..+....-.+.+...||..+|.++
T Consensus 2 ~~~Lt~~eR~~I~~l~~~G~s~~~IA~~lg~s~ 34 (44)
T PF13936_consen 2 YKHLTPEERNQIEALLEQGMSIREIAKRLGRSR 34 (44)
T ss_dssp ----------HHHHHHCS---HHHHHHHTT--H
T ss_pred ccchhhhHHHHHHHHHHcCCCHHHHHHHHCcCc
Confidence 456677777777777778889999999998765
Done!