Query psy3979
Match_columns 286
No_of_seqs 288 out of 1803
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 22:10:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3979.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3979hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c4b_A Endoribonuclease dicer; 100.0 1.6E-34 5.5E-39 263.8 14.9 156 111-286 13-168 (265)
2 3o2r_A Ribonuclease III; struc 100.0 6.9E-32 2.4E-36 232.9 10.1 98 110-210 25-122 (170)
3 2qvw_A GLP_546_48378_50642; di 100.0 2.7E-31 9.1E-36 273.4 11.6 89 112-209 594-710 (756)
4 3n3w_A Ribonuclease III; nucle 100.0 1.2E-30 4.1E-35 237.1 10.1 97 111-210 26-122 (248)
5 2nug_A Ribonuclease III, RNAse 100.0 4.7E-30 1.6E-34 228.8 10.7 95 112-209 3-97 (221)
6 3rv1_A K. polysporus DCR1; RNA 100.0 1.4E-29 4.6E-34 230.1 9.1 96 113-208 85-189 (246)
7 1o0w_A Ribonuclease III, RNAse 99.9 4.3E-29 1.5E-33 227.0 5.4 99 111-209 19-123 (252)
8 2a11_A Ribonuclease III, RNAse 99.9 6.4E-29 2.2E-33 224.3 6.3 97 112-209 6-106 (242)
9 3rv0_A K. polysporus DCR1; RNA 99.9 9.6E-28 3.3E-32 227.2 7.8 96 113-208 85-189 (341)
10 2qvw_A GLP_546_48378_50642; di 99.8 3.5E-21 1.2E-25 198.3 5.9 65 146-210 332-396 (756)
11 1u61_A Hypothetical protein; s 99.6 3.2E-15 1.1E-19 124.7 7.6 54 145-199 9-62 (138)
12 2gsl_A Hypothetical protein; a 99.4 5.7E-14 1.9E-18 116.9 4.8 53 145-199 12-64 (137)
13 3o2r_A Ribonuclease III; struc 98.1 2.2E-06 7.4E-11 73.4 4.0 33 40-72 129-161 (170)
14 3n3w_A Ribonuclease III; nucle 97.8 1.6E-05 5.3E-10 71.7 4.0 34 40-73 129-162 (248)
15 3c4b_A Endoribonuclease dicer; 97.6 3.5E-05 1.2E-09 69.6 4.4 34 40-73 151-186 (265)
16 1o0w_A Ribonuclease III, RNAse 97.6 4.2E-05 1.4E-09 68.8 4.0 33 41-73 132-164 (252)
17 2a11_A Ribonuclease III, RNAse 97.5 4.7E-05 1.6E-09 67.9 4.0 33 41-73 115-147 (242)
18 1u61_A Hypothetical protein; s 97.5 7.8E-05 2.7E-09 61.8 4.7 28 46-73 98-125 (138)
19 2nug_A Ribonuclease III, RNAse 97.4 8E-05 2.7E-09 65.5 3.3 31 43-73 102-134 (221)
20 3rv1_A K. polysporus DCR1; RNA 97.3 0.00014 4.8E-09 65.6 3.8 33 41-73 200-235 (246)
21 2gsl_A Hypothetical protein; a 97.3 0.00023 7.8E-09 58.9 4.6 29 45-73 97-125 (137)
22 3rv0_A K. polysporus DCR1; RNA 97.2 0.00018 6E-09 67.9 3.7 33 41-73 200-235 (341)
23 3iwf_A Transcription regulator 30.5 23 0.00079 27.1 2.0 43 161-205 20-65 (107)
24 1ztd_A Hypothetical protein PF 28.2 1.4E+02 0.0049 23.5 6.1 49 148-206 12-62 (133)
25 2o3f_A Putative HTH-type trans 24.0 25 0.00084 27.0 1.0 42 162-205 25-69 (111)
26 3sgr_A Tandem repeat of amyloi 20.9 4.3 0.00015 23.0 -2.8 8 273-280 4-11 (25)
No 1
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=1.6e-34 Score=263.83 Aligned_cols=156 Identities=45% Similarity=0.714 Sum_probs=125.4
Q ss_pred hhHHHHHHHhCCCcCChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchH
Q psy3979 111 PECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNV 190 (286)
Q Consensus 111 ~~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~ 190 (286)
..+..||++|||+|+|+.||.+||||+||..+....|||||||||||||+++|++|||.+||+.++|.||.+|+++|||.
T Consensus 13 ~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~ 92 (265)
T 3c4b_A 13 SGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNT 92 (265)
T ss_dssp TTHHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHhCCccCCHHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhH
Confidence 45789999999999999999999999999765445799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhhhccCCchHHHHHHHHHHHHHhhcccCCchhhHHHHhhhHHHHhHHHhhhhcccccccccccccccC
Q psy3979 191 TFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVD 270 (286)
Q Consensus 191 ~LA~ia~~lgL~~~I~~~s~~l~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (286)
+||.+|+++||++||++.++.+...|.+|++.....++.....+. +.....+. . ......
T Consensus 93 ~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~--------------l~~~~~~~----~--~~~~~~ 152 (265)
T 3c4b_A 93 IFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSE--------------LRRSEEDE----E--KEEDIE 152 (265)
T ss_dssp HHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC--------------------------------------CCSC
T ss_pred HHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHH--------------hhhcchhh----h--hhcccc
Confidence 999999999999999999999999999999863322211100000 00000000 0 123456
Q ss_pred CCccchhHHHHHhccC
Q psy3979 271 VPKALGDVFEALVEDT 286 (286)
Q Consensus 271 ~PK~L~Dv~Esi~GAI 286 (286)
.||+|+|+|||++|||
T Consensus 153 ~~~~laD~~EAliGAi 168 (265)
T 3c4b_A 153 VPKAMGDIFESLAGAI 168 (265)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHhhhe
Confidence 8999999999999997
No 2
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.97 E-value=6.9e-32 Score=232.89 Aligned_cols=98 Identities=36% Similarity=0.707 Sum_probs=92.0
Q ss_pred chhHHHHHHHhCCCcCChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhch
Q psy3979 110 IPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNN 189 (286)
Q Consensus 110 ~~~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN 189 (286)
+..+..||++|||+|+|+.||.+||||+||... .+||||||||||||+++|+.++|.+||+.++|.||++|+.+|||
T Consensus 25 m~~l~~le~~lgy~F~d~~LL~~AlTH~S~~~~---~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~ 101 (170)
T 3o2r_A 25 MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKS---YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNE 101 (170)
T ss_dssp --CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTT---CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHhcCCCCCCC---cchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCH
Confidence 345899999999999999999999999999764 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCchhhhccCCc
Q psy3979 190 VTFASYAVRLDLHKHLLHDSP 210 (286)
Q Consensus 190 ~~LA~ia~~lgL~~~I~~~s~ 210 (286)
++||.+|+++||++||+.++.
T Consensus 102 ~~La~ia~~lgL~~~l~~~~~ 122 (170)
T 3o2r_A 102 KSFAKIANSLNLGDFILMSVA 122 (170)
T ss_dssp HHHHHHHHHTTGGGTCBCCHH
T ss_pred HHHHHHHHHcCcHHhhhcCcc
Confidence 999999999999999998753
No 3
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.97 E-value=2.7e-31 Score=273.43 Aligned_cols=89 Identities=22% Similarity=0.347 Sum_probs=85.5
Q ss_pred hHHHHHHHhCCCcCC--------------------------hHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHH
Q psy3979 112 ECTQLEKRINYTFQD--------------------------KSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTA 165 (286)
Q Consensus 112 ~l~~le~~LGY~Fk~--------------------------~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~ 165 (286)
.+..+|++|||+|+| +.||.+||||+| ||||||||||||++++++
T Consensus 594 ~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S---------neRLEfLGDaVL~l~vs~ 664 (756)
T 2qvw_A 594 VLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV---------YQKLELLGDAFLKCSLAL 664 (756)
T ss_dssp HHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG---------GHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHhcCcc---------chHHHHHHHHHHHHHHHH
Confidence 378999999999999 899999999998 899999999999999999
Q ss_pred HHHHhCCCCChhhhHHHHHHhhchHHHHHHHHHcC--chhhhccCC
Q psy3979 166 YLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLD--LHKHLLHDS 209 (286)
Q Consensus 166 ~Ly~~~p~~~~g~Lt~lrs~lVsN~~LA~ia~~lg--L~~~I~~~s 209 (286)
+||.+||+.++|.||++|+++|||++||.+|+++| |++||+.++
T Consensus 665 ~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~ 710 (756)
T 2qvw_A 665 HLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESH 710 (756)
T ss_dssp HHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHS
T ss_pred HHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCc
Confidence 99999999999999999999999999999999999 999997764
No 4
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.96 E-value=1.2e-30 Score=237.13 Aligned_cols=97 Identities=36% Similarity=0.705 Sum_probs=92.5
Q ss_pred hhHHHHHHHhCCCcCChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchH
Q psy3979 111 PECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNV 190 (286)
Q Consensus 111 ~~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~ 190 (286)
..+..||++|||+|+|+.||.+||||+||... .+||||||||||||+++|+.+||.+||+.++|.||.+|+.+|||+
T Consensus 26 ~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~---~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~ 102 (248)
T 3n3w_A 26 KNIEKLEQSLTYEFKDKNLLIHALTHKSFKKS---YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEK 102 (248)
T ss_dssp TTHHHHHHHHTCCCSSHHHHHHHTBCTTSBTT---BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHhcCcCCCCC---CCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHH
Confidence 45899999999999999999999999999764 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCchhhhccCCc
Q psy3979 191 TFASYAVRLDLHKHLLHDSP 210 (286)
Q Consensus 191 ~LA~ia~~lgL~~~I~~~s~ 210 (286)
+||.+|.++||++||+.++.
T Consensus 103 ~La~~a~~lgL~~~l~~~~~ 122 (248)
T 3n3w_A 103 SFAKIANSLNLGDFILMSVA 122 (248)
T ss_dssp HHHHHHHHTTGGGTCBCCHH
T ss_pred HHHHHHHHcCcHHHhhcCch
Confidence 99999999999999998753
No 5
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.96 E-value=4.7e-30 Score=228.79 Aligned_cols=95 Identities=35% Similarity=0.612 Sum_probs=90.1
Q ss_pred hHHHHHHHhCCCcCChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHH
Q psy3979 112 ECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVT 191 (286)
Q Consensus 112 ~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~ 191 (286)
.+..||++|||+|+|+.||.+||||+||... .+||||||||||||+++|+.+||.+||+.++|.||.+|+.+|||.+
T Consensus 3 ~~~~l~~~lg~~f~~~~ll~~AlTh~S~~~~---~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~ 79 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKK---EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEF 79 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSS---SCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCCC---CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHH
Confidence 4789999999999999999999999999753 6999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCchhhhccCC
Q psy3979 192 FASYAVRLDLHKHLLHDS 209 (286)
Q Consensus 192 LA~ia~~lgL~~~I~~~s 209 (286)
||.+|.++||++||+.++
T Consensus 80 la~~a~~l~l~~~l~~~~ 97 (221)
T 2nug_A 80 FNLLAQKLELHKFIRIKR 97 (221)
T ss_dssp HHHHHHTTTGGGTCBSCT
T ss_pred HHHHHHHcChHHhhccCC
Confidence 999999999999997653
No 6
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.96 E-value=1.4e-29 Score=230.08 Aligned_cols=96 Identities=27% Similarity=0.470 Sum_probs=86.3
Q ss_pred HHHHHHHhCCC-cCChHHHHHHhhCCCCCCCC--------CCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHH
Q psy3979 113 CTQLEKRINYT-FQDKSFLLQALSHPTYNANR--------ITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIR 183 (286)
Q Consensus 113 l~~le~~LGY~-Fk~~~LL~eALTH~S~~~~~--------~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lr 183 (286)
...+|++|||+ |+|+.||.+||||+||.... ...+||||||||||||+++++.+||.+||+.++|.||.+|
T Consensus 85 ~~~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lR 164 (246)
T 3rv1_A 85 NTDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMK 164 (246)
T ss_dssp CCGGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hHHHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHH
Confidence 35789999999 99999999999999997531 2469999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHHcCchhhhccC
Q psy3979 184 SAMVNNVTFASYAVRLDLHKHLLHD 208 (286)
Q Consensus 184 s~lVsN~~LA~ia~~lgL~~~I~~~ 208 (286)
+.+|||.+|+.+|+++||++||+++
T Consensus 165 s~lVsn~~La~iA~~lgL~~~l~~~ 189 (246)
T 3rv1_A 165 ESIVNNNNLFDWSTKLNFTKRLQGN 189 (246)
T ss_dssp HHHHSHHHHHHHHHHTTSHHHHCSS
T ss_pred HHHhCHHHHHHHHHHCCcHHHHhhc
Confidence 9999999999999999999999975
No 7
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.95 E-value=4.3e-29 Score=227.02 Aligned_cols=99 Identities=25% Similarity=0.536 Sum_probs=91.0
Q ss_pred hhHHHHHHHhCCCcCChHHHHHHhhCCCCCCCC-CCc-----chhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHH
Q psy3979 111 PECTQLEKRINYTFQDKSFLLQALSHPTYNANR-ITT-----SYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRS 184 (286)
Q Consensus 111 ~~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~-~~~-----~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs 184 (286)
..+..||++|||+|+|+.||.+||||+||.... ... +||||||||||||+++|+.+||.+||+.++|.||.+|+
T Consensus 19 ~~~~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r~ 98 (252)
T 1o0w_A 19 KIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKS 98 (252)
T ss_dssp HHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 357899999999999999999999999986421 112 89999999999999999999999999999999999999
Q ss_pred HhhchHHHHHHHHHcCchhhhccCC
Q psy3979 185 AMVNNVTFASYAVRLDLHKHLLHDS 209 (286)
Q Consensus 185 ~lVsN~~LA~ia~~lgL~~~I~~~s 209 (286)
.+|||.+||.+|.++||++||+.++
T Consensus 99 ~lV~~~~la~~a~~lgL~~~l~~~~ 123 (252)
T 1o0w_A 99 AAASEEVLAMVSRKMNLGKFLFLGK 123 (252)
T ss_dssp HHTSHHHHHHHHHHTTHHHHCBCCH
T ss_pred HHhCHHHHHHHHHHcCcHHhhccCc
Confidence 9999999999999999999999875
No 8
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.95 E-value=6.4e-29 Score=224.27 Aligned_cols=97 Identities=29% Similarity=0.459 Sum_probs=90.2
Q ss_pred hHHHHHHHhCCCcCChHHHHHHhhCCCCCCC-CCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchH
Q psy3979 112 ECTQLEKRINYTFQDKSFLLQALSHPTYNAN-RITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNV 190 (286)
Q Consensus 112 ~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~-~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~ 190 (286)
.+..||++|||+| |+.||.+||||+||..+ ....+|||||||||+||+++|+.+||.+||+.++|.||.+|+.+|||.
T Consensus 6 ~l~~l~~~lgy~f-~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~ 84 (242)
T 2a11_A 6 SRQPLLDALGVDL-PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQ 84 (242)
T ss_dssp CCHHHHHHHTSCC-CHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHH
Confidence 3678999999999 99999999999998642 235799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc---CchhhhccCC
Q psy3979 191 TFASYAVRL---DLHKHLLHDS 209 (286)
Q Consensus 191 ~LA~ia~~l---gL~~~I~~~s 209 (286)
+|+.+|.++ ||++||+.++
T Consensus 85 ~la~~a~~l~~~gL~~~l~~~~ 106 (242)
T 2a11_A 85 ALADVARRLCAEGLGVHVLLGR 106 (242)
T ss_dssp HHHHHHHHHSSSCSGGGCBCCH
T ss_pred HHHHHHHHhhhhChHHHhhcCc
Confidence 999999999 9999998875
No 9
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.94 E-value=9.6e-28 Score=227.22 Aligned_cols=96 Identities=27% Similarity=0.470 Sum_probs=88.2
Q ss_pred HHHHHHHhCCC-cCChHHHHHHhhCCCCCCCC--------CCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHH
Q psy3979 113 CTQLEKRINYT-FQDKSFLLQALSHPTYNANR--------ITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIR 183 (286)
Q Consensus 113 l~~le~~LGY~-Fk~~~LL~eALTH~S~~~~~--------~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lr 183 (286)
...+|++|||+ |+|+.||.+||||+||.... ...+|||||||||+||+++++.+||.+||+.++|.||.+|
T Consensus 85 ~~~lE~~igy~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr 164 (341)
T 3rv0_A 85 NTDVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMK 164 (341)
T ss_dssp CCTTGGGCSSCCCSCHHHHHHHHCCCCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred hhHHHHhcCCCCcCCHHHHHHHhcCcCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHH
Confidence 45789999999 99999999999999997642 2468999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHHcCchhhhccC
Q psy3979 184 SAMVNNVTFASYAVRLDLHKHLLHD 208 (286)
Q Consensus 184 s~lVsN~~LA~ia~~lgL~~~I~~~ 208 (286)
+.+|||.+|+.+|+++||+++|+.+
T Consensus 165 ~~lVs~~~La~iA~~lgL~~~l~~~ 189 (341)
T 3rv0_A 165 ESIVNNNNLFDWSTKLNFTKRLQGN 189 (341)
T ss_dssp HHHHSHHHHHHHHHHTTTTTTTCCS
T ss_pred HHHhCHHHHHHHHHHcCcHHHhhhc
Confidence 9999999999999999999999975
No 10
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.82 E-value=3.5e-21 Score=198.33 Aligned_cols=65 Identities=31% Similarity=0.470 Sum_probs=62.5
Q ss_pred cchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHHHHHHHHcCchhhhccCCc
Q psy3979 146 TSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSP 210 (286)
Q Consensus 146 ~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~LA~ia~~lgL~~~I~~~s~ 210 (286)
.|||||||||||||+++|+++||.+||+.++|.||++|+++|||++|+.+|+++||++||+.++.
T Consensus 332 ~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~ 396 (756)
T 2qvw_A 332 DVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNN 396 (756)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCC
Confidence 58999999999999999999999999999999999999999999999999999999999987753
No 11
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.57 E-value=3.2e-15 Score=124.66 Aligned_cols=54 Identities=17% Similarity=0.338 Sum_probs=51.9
Q ss_pred CcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHHHHHHHHc
Q psy3979 145 TTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRL 199 (286)
Q Consensus 145 ~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~LA~ia~~l 199 (286)
..|.+|||||||||++++|+++||.+ |..++|.||++|+.+||.+++|.++.++
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l 62 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHL 62 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHH
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 46899999999999999999999999 8889999999999999999999999998
No 12
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.44 E-value=5.7e-14 Score=116.92 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=50.6
Q ss_pred CcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHHHHHHHHc
Q psy3979 145 TTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRL 199 (286)
Q Consensus 145 ~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~LA~ia~~l 199 (286)
..|.+|||||||||++++|+++||.+ |. ++|.||++|+.+||.+++|.++.++
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l 64 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKI 64 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 46899999999999999999999998 88 9999999999999999999999987
No 13
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=98.07 E-value=2.2e-06 Score=73.36 Aligned_cols=33 Identities=21% Similarity=0.245 Sum_probs=30.2
Q ss_pred ccCchhHHHHHHHHHHHHHhhCChHHHHHHHHH
Q psy3979 40 KLGDKVVADVVESLTGVYLRSCGIEGAMLFLQA 72 (286)
Q Consensus 40 ~l~~k~lADv~EAliGA~~l~~G~~~a~~~~~~ 72 (286)
..++|++||+|||+|||+|+|+|++.|.+|+..
T Consensus 129 ~~~~~ilad~fEAliGAiylD~G~~~a~~~i~~ 161 (170)
T 3o2r_A 129 KEKPSILSDALEAIIGAIHLEAGFEFAKTIALR 161 (170)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 457899999999999999999999999999954
No 14
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=97.75 E-value=1.6e-05 Score=71.72 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=30.7
Q ss_pred ccCchhHHHHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 40 KLGDKVVADVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 40 ~l~~k~lADv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
..++|++||+|||+|||+|+|+|++.+.+|+..+
T Consensus 129 ~~~~~~lad~fEAliGAiyld~G~~~~~~~i~~~ 162 (248)
T 3n3w_A 129 KEKPSILSDALEAIIGAIHLEAGFEFAKTIALRL 162 (248)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHCChHHHHHHHHHH
Confidence 4578999999999999999999999999999543
No 15
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=97.63 E-value=3.5e-05 Score=69.57 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=29.7
Q ss_pred ccCchhHHHHHHHHHHHHHhhCCh--HHHHHHHHHh
Q psy3979 40 KLGDKVVADVVESLTGVYLRSCGI--EGAMLFLQAL 73 (286)
Q Consensus 40 ~l~~k~lADv~EAliGA~~l~~G~--~~a~~~~~~~ 73 (286)
...+|++||+|||+|||+|+|+|+ +.+.+|+..+
T Consensus 151 ~~~~~~laD~~EAliGAiylD~G~~~~~~~~~i~~~ 186 (265)
T 3c4b_A 151 IEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPM 186 (265)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHhhheeeecCCCHHHHHHHHHHH
Confidence 356899999999999999999998 8899998543
No 16
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=97.57 E-value=4.2e-05 Score=68.82 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=30.0
Q ss_pred cCchhHHHHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 41 l~~k~lADv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
..++++||+|||+|||+|+|+|++.+.+|+..+
T Consensus 132 ~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 164 (252)
T 1o0w_A 132 DRDSILADAFEALLAAIYLDQGYEKIKELFEQE 164 (252)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCccHHHhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 468999999999999999999999999999654
No 17
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=97.54 E-value=4.7e-05 Score=67.91 Aligned_cols=33 Identities=30% Similarity=0.317 Sum_probs=30.1
Q ss_pred cCchhHHHHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 41 l~~k~lADv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
-.+|++||++||+|||+|+|+|++.+.+|+..+
T Consensus 115 ~~~~~lad~~EAliGAiyld~g~~~~~~~i~~~ 147 (242)
T 2a11_A 115 DKSSILADGMESLLGAIYLQHGMEKAREVILRL 147 (242)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 358999999999999999999999999999665
No 18
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=97.52 E-value=7.8e-05 Score=61.76 Aligned_cols=28 Identities=14% Similarity=-0.047 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 46 VADVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 46 lADv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
+||++||||||+||++|++.+..|+.++
T Consensus 98 ~A~~fEALiGalYLd~g~er~~~~i~~~ 125 (138)
T 1u61_A 98 HSTAFEALIGYHHLLNNRERLDEIVYKA 125 (138)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999553
No 19
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=97.38 E-value=8e-05 Score=65.54 Aligned_cols=31 Identities=19% Similarity=0.324 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHHHHHhhCChHH--HHHHHHHh
Q psy3979 43 DKVVADVVESLTGVYLRSCGIEG--AMLFLQAL 73 (286)
Q Consensus 43 ~k~lADv~EAliGA~~l~~G~~~--a~~~~~~~ 73 (286)
+|++||++||+|||+|+|+|++. +.+++..+
T Consensus 102 ~~~lad~~EAliGAiyld~g~~~~~~~~~i~~~ 134 (221)
T 2nug_A 102 ETIIGDVFEALWAAVYIDSGRDANFTRELFYKL 134 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 89999999999999999999999 99998554
No 20
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=97.29 E-value=0.00014 Score=65.65 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=27.1
Q ss_pred cCchhHHHHHHHHHHHHHhhC---ChHHHHHHHHHh
Q psy3979 41 LGDKVVADVVESLTGVYLRSC---GIEGAMLFLQAL 73 (286)
Q Consensus 41 l~~k~lADv~EAliGA~~l~~---G~~~a~~~~~~~ 73 (286)
.++|++||+|||+|||+|+|+ |++.+.+++..+
T Consensus 200 ~~~~ilAD~fEAlIGAIylD~~g~~l~~v~~~l~~L 235 (246)
T 3rv1_A 200 KMSKRYADCVQAYIGALVIDRFGTEFLDIKEWLEEL 235 (246)
T ss_dssp ---CHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhHcCCCCCHHHHHHHHHHH
Confidence 467999999999999999998 499999998554
No 21
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=97.27 E-value=0.00023 Score=58.89 Aligned_cols=29 Identities=14% Similarity=0.085 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHhhCChHHHHHHHHHh
Q psy3979 45 VVADVVESLTGVYLRSCGIEGAMLFLQAL 73 (286)
Q Consensus 45 ~lADv~EAliGA~~l~~G~~~a~~~~~~~ 73 (286)
.+||++||||||+||++|++.+..++.++
T Consensus 97 ~~At~fEALiGaLYLd~~~erl~~ll~~~ 125 (137)
T 2gsl_A 97 KEATALEAIIGAMYLLKKEEEIKKIINIV 125 (137)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 59999999999999999999999999664
No 22
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=97.21 E-value=0.00018 Score=67.89 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=29.6
Q ss_pred cCchhHHHHHHHHHHHHHhhC---ChHHHHHHHHHh
Q psy3979 41 LGDKVVADVVESLTGVYLRSC---GIEGAMLFLQAL 73 (286)
Q Consensus 41 l~~k~lADv~EAliGA~~l~~---G~~~a~~~~~~~ 73 (286)
.++|++||+|||+|||+|+|+ |++.+.+|+..+
T Consensus 200 ~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l 235 (341)
T 3rv0_A 200 KMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEEL 235 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHH
Confidence 357899999999999999998 999999999553
No 23
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=30.48 E-value=23 Score=27.06 Aligned_cols=43 Identities=5% Similarity=0.072 Sum_probs=29.8
Q ss_pred HHHHHHHHHhC---CCCChhhhHHHHHHhhchHHHHHHHHHcCchhhh
Q psy3979 161 FLVTAYLYENF---SHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205 (286)
Q Consensus 161 ~~vs~~Ly~~~---p~~~~g~Lt~lrs~lVsN~~LA~ia~~lgL~~~I 205 (286)
.-|++|+..+. +.++-.+| .+..-||..++-++|+++|+..|-
T Consensus 20 ~~ia~yil~~~~~~~~~si~el--A~~~~vS~aTv~Rf~kkLGf~gf~ 65 (107)
T 3iwf_A 20 KKIAQFILNYPHKVVNMTSQEI--ANQLETSSTSIIRLSKKVTPGGFN 65 (107)
T ss_dssp HHHHHHHHHCHHHHTTCCHHHH--HHHHTSCHHHHHHHHHHHSTTHHH
T ss_pred HHHHHHHHhCHHHHHHCCHHHH--HHHHCCCHHHHHHHHHHhCCCCHH
Confidence 34556666543 23333333 367889999999999999999874
No 24
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=28.25 E-value=1.4e+02 Score=23.47 Aligned_cols=49 Identities=29% Similarity=0.266 Sum_probs=37.3
Q ss_pred hhHHHHhhHHHHHHHHHHHHHH--hCCCCChhhhHHHHHHhhchHHHHHHHHHcCchhhhc
Q psy3979 148 YQRLEFLGDAIIDFLVTAYLYE--NFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206 (286)
Q Consensus 148 yeRLEfLGDAVL~~~vs~~Ly~--~~p~~~~g~Lt~lrs~lVsN~~LA~ia~~lgL~~~I~ 206 (286)
-.-|.-+||++++++.+--|-+ -+|.-. -|-|.+||..-..-||.+.+.
T Consensus 12 dK~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~p 62 (133)
T 1ztd_A 12 DKGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNLR 62 (133)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGCC
T ss_pred cchHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcCC
Confidence 4568999999999999988743 344322 377888988888888888873
No 25
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=24.05 E-value=25 Score=26.95 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=28.4
Q ss_pred HHHHHHHHhC---CCCChhhhHHHHHHhhchHHHHHHHHHcCchhhh
Q psy3979 162 LVTAYLYENF---SHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205 (286)
Q Consensus 162 ~vs~~Ly~~~---p~~~~g~Lt~lrs~lVsN~~LA~ia~~lgL~~~I 205 (286)
-|++|+..+. +.++-.+| .+..-||..++-++|+++|+..|-
T Consensus 25 ~ia~yil~~~~~~~~~si~el--A~~~~vS~aTv~Rf~kklG~~gf~ 69 (111)
T 2o3f_A 25 KLADYILAHPHXAIESTVNEI--SALANSSDAAVIRLCXSLGLKGFQ 69 (111)
T ss_dssp HHHHHHHHCHHHHHTCCHHHH--HHHTTCCHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHChHHHHhcCHHHH--HHHHCCCHHHHHHHHHHcCCCCHH
Confidence 3555555542 23333333 356789999999999999998774
No 26
>3sgr_A Tandem repeat of amyloid-related segment of alpha crystallin residues 90-100 mutant...; amyloid oligomer, beta cylindrin, protein fibril; 2.17A {Homo sapiens}
Probab=20.88 E-value=4.3 Score=22.99 Aligned_cols=8 Identities=75% Similarity=1.107 Sum_probs=5.3
Q ss_pred ccchhHHH
Q psy3979 273 KALGDVFE 280 (286)
Q Consensus 273 K~L~Dv~E 280 (286)
|+||||+|
T Consensus 4 kvlgdvie 11 (25)
T 3sgr_A 4 KVLGDVIE 11 (26)
T ss_dssp EEEEEEEE
T ss_pred EEeeeeee
Confidence 66777665
Done!