Your job contains 1 sequence.
>psy3979
MEFLSNLDFDLYQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRS
CGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRI
NYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEIS
DIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDEEEEEEEE
EGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEALVEDT
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy3979
(286 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|B3KRG4 - symbol:DICER1 "Endoribonuclease Dicer"... 301 4.7e-38 3
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 388 2.1e-37 2
FB|FBgn0039016 - symbol:Dcr-1 "Dicer-1" species:7227 "Dro... 311 7.1e-37 3
UNIPROTKB|A0MQH0 - symbol:DICER1 "Endoribonuclease Dicer"... 302 8.3e-37 3
UNIPROTKB|B3DLA6 - symbol:dicer1 "Endoribonuclease Dicer"... 307 1.6e-36 3
UNIPROTKB|Q6TUI4 - symbol:DICER1 "Endoribonuclease Dicer"... 304 1.7e-36 3
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 301 2.2e-36 3
UNIPROTKB|F1MCQ5 - symbol:DICER1 "Endoribonuclease Dicer"... 301 3.5e-36 3
MGI|MGI:2177178 - symbol:Dicer1 "dicer 1, ribonuclease ty... 297 5.7e-36 3
FB|FBgn0034246 - symbol:Dcr-2 "Dicer-2" species:7227 "Dro... 364 1.3e-35 2
RGD|1309381 - symbol:Dicer1 "dicer 1, ribonuclease type I... 302 1.4e-31 2
WB|WBGene00000939 - symbol:dcr-1 species:6239 "Caenorhabd... 361 1.7e-31 1
UNIPROTKB|F1NJX0 - symbol:DICER1 "Endoribonuclease Dicer"... 305 1.3e-28 2
UNIPROTKB|Q25BN1 - symbol:DICER1 "Endoribonuclease Dicer"... 305 1.3e-28 2
UNIPROTKB|F1NP11 - symbol:DICER1 "Endoribonuclease Dicer"... 305 1.3e-28 2
TAIR|locus:2097705 - symbol:DCL2 "dicer-like 2" species:3... 317 1.4e-28 2
UNIPROTKB|E9PU15 - symbol:Dicer1 "Protein Dicer1" species... 302 2.6e-28 2
UNIPROTKB|E2RIN4 - symbol:DICER1 "Uncharacterized protein... 301 3.4e-28 2
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 287 5.4e-25 2
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 266 1.9e-21 1
UNIPROTKB|Q8LMR2 - symbol:DCL1 "Endoribonuclease Dicer ho... 252 9.3e-21 2
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 225 2.3e-18 2
TIGR_CMR|CJE_1807 - symbol:CJE_1807 "ribonuclease III" sp... 173 4.3e-13 1
ASPGD|ASPL0000041548 - symbol:dclB species:162425 "Emeric... 196 4.8e-13 1
TAIR|locus:2092409 - symbol:RTL2 "RNAse THREE-like protei... 169 1.3e-11 2
TAIR|locus:504955425 - symbol:RTL1 "RNAse II-like 1" spec... 164 2.0e-10 1
FB|FBgn0026722 - symbol:drosha "drosha" species:7227 "Dro... 170 1.1e-09 1
TAIR|locus:2153333 - symbol:RTL3 "RNAse THREE-like protei... 165 2.8e-09 1
TIGR_CMR|DET_1025 - symbol:DET_1025 "ribonuclease III" sp... 151 5.1e-09 1
TIGR_CMR|BA_3987 - symbol:BA_3987 "ribonuclease III" spec... 146 6.7e-09 2
TIGR_CMR|CHY_1444 - symbol:CHY_1444 "ribonuclease III" sp... 149 8.9e-09 1
UNIPROTKB|F1PJL5 - symbol:DROSHA "Uncharacterized protein... 158 1.0e-08 1
ZFIN|ZDB-GENE-070209-23 - symbol:rnasen "ribonuclease typ... 160 1.6e-08 1
UNIPROTKB|F1LQY5 - symbol:F1LQY5 "Uncharacterized protein... 158 2.0e-08 1
MGI|MGI:1261425 - symbol:Drosha "drosha, ribonuclease typ... 158 2.9e-08 1
UNIPROTKB|E9PTR3 - symbol:E9PTR3 "Uncharacterized protein... 158 2.9e-08 1
UNIPROTKB|Q9NRR4 - symbol:DROSHA "Ribonuclease 3" species... 158 2.9e-08 1
UNIPROTKB|H0YJZ6 - symbol:DICER1 "Endoribonuclease Dicer"... 104 2.9e-08 2
UNIPROTKB|F1SP38 - symbol:DROSHA "Uncharacterized protein... 156 4.7e-08 1
UNIPROTKB|E1BGY0 - symbol:DROSHA "Uncharacterized protein... 156 4.9e-08 1
UNIPROTKB|Q9KPB2 - symbol:rnc "Ribonuclease 3" species:24... 141 7.1e-08 1
TIGR_CMR|VC_2461 - symbol:VC_2461 "ribonuclease III" spec... 141 7.1e-08 1
TIGR_CMR|NSE_0918 - symbol:NSE_0918 "ribonuclease III" sp... 139 1.2e-07 1
UNIPROTKB|P0A7Y0 - symbol:rnc "RNase III" species:83333 "... 137 2.4e-07 1
TIGR_CMR|CPS_4122 - symbol:CPS_4122 "ribonuclease III" sp... 138 3.7e-07 1
UNIPROTKB|F1NQC9 - symbol:DROSHA "Uncharacterized protein... 144 3.9e-07 2
TIGR_CMR|APH_1149 - symbol:APH_1149 "ribonuclease III" sp... 135 5.5e-07 1
UNIPROTKB|F1M2R2 - symbol:F1M2R2 "Uncharacterized protein... 136 8.0e-07 1
RGD|1307626 - symbol:Drosha "drosha, ribonuclease type II... 136 8.1e-07 1
TIGR_CMR|GSU_2228 - symbol:GSU_2228 "ribonuclease III" sp... 134 8.8e-07 1
ASPGD|ASPL0000015309 - symbol:AN11224 species:162425 "Eme... 133 1.0e-06 2
DICTYBASE|DDB_G0268410 - symbol:drnB "putative RNase III"... 142 2.0e-06 1
UNIPROTKB|A4RHU9 - symbol:DCL2 "Dicer-like protein 2" spe... 142 2.2e-06 1
TIGR_CMR|ECH_1054 - symbol:ECH_1054 "ribonuclease III" sp... 128 3.2e-06 1
TIGR_CMR|CBU_1503 - symbol:CBU_1503 "ribonuclease III" sp... 127 4.8e-06 1
TIGR_CMR|SO_1348 - symbol:SO_1348 "ribonuclease III" spec... 125 7.5e-06 1
DICTYBASE|DDB_G0274077 - symbol:drnA-2 "putative RNAse II... 137 2.8e-05 2
DICTYBASE|DDB_G0273051 - symbol:drnA-1 "putative RNAse II... 137 2.8e-05 2
UNIPROTKB|Q61XX9 - symbol:drsh-1 "Ribonuclease 3" species... 127 7.1e-05 1
TIGR_CMR|SPO_3198 - symbol:SPO_3198 "ribonuclease III" sp... 110 0.00046 1
WB|WBGene00009163 - symbol:drsh-1 species:6239 "Caenorhab... 119 0.00058 1
UNIPROTKB|O01326 - symbol:drsh-1 "Ribonuclease 3" species... 119 0.00058 1
>UNIPROTKB|B3KRG4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 UniGene:Hs.87889 HGNC:HGNC:17098 ChiTaRS:DICER1
EMBL:AK091513 IPI:IPI01025259 SMR:B3KRG4 STRING:B3KRG4
Ensembl:ENST00000556045 UCSC:uc001ydy.1 HOVERGEN:HBG092134
Uniprot:B3KRG4
Length = 820
Score = 301 (111.0 bits), Expect = 4.7e-38, Sum P(3) = 4.7e-38
Identities = 58/111 (52%), Positives = 80/111 (72%)
Query: 117 EKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSP 176
EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDAI+D+L+T +LYE+ SP
Sbjct: 568 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 627
Query: 177 GEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARN 227
G ++D+RSA+VNN FAS AV+ D HK+ SP L+ + F Q Q +N
Sbjct: 628 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKN 678
Score = 104 (41.7 bits), Expect = 4.7e-38, Sum P(3) = 4.7e-38
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 8 DFDL-YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA 66
DF + + +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A
Sbjct: 420 DFVVGFWNPSEENCGVDTGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAA 477
Query: 67 MLFLQALN--ILPQSK-IDVHEAL 87
LFL +L +LP K D +AL
Sbjct: 478 QLFLCSLGLKVLPVIKRTDREKAL 501
Score = 60 (26.2 bits), Expect = 4.7e-38, Sum P(3) = 4.7e-38
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 698 EDIEVPKAMGDIFESL 713
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 388 (141.6 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 93/207 (44%), Positives = 123/207 (59%)
Query: 30 SSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALN--ILP---QSKIDVH 84
S SY+ + DK +AD VE+L G YL SCG A LFL +L +LP QS
Sbjct: 1519 SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPPEKQSSGGSA 1578
Query: 85 EALYGPHPSAVRC----PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYN 140
E YG RC P+ R L+ L I E +INYTF++K++LLQA +H +Y+
Sbjct: 1579 ELQYGWLKIPPRCMFEHPDAERTLNHL--ISGFLNFESKINYTFKNKAYLLQAFTHASYH 1636
Query: 141 ANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLD 200
N IT YQRLEFLGDAI+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D
Sbjct: 1637 YNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYD 1696
Query: 201 LHKHLLHDSPRLYENVTRFAQNQEARN 227
HK+ SP L+ + F Q Q +N
Sbjct: 1697 YHKYFKAVSPELFHVIDDFVQFQLEKN 1723
Score = 60 (26.2 bits), Expect = 2.1e-37, Sum P(2) = 2.1e-37
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 1743 EDIEVPKAMGDIFESL 1758
>FB|FBgn0039016 [details] [associations]
symbol:Dcr-1 "Dicer-1" species:7227 "Drosophila melanogaster"
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0016443 "bidentate ribonuclease III activity" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016246 "RNA interference" evidence=IDA;IMP;TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP;TAS] [GO:0035087 "siRNA loading
onto RISC involved in RNA interference" evidence=IMP] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0031054
"pre-miRNA processing" evidence=IDA;IMP;TAS] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0042078 "germ-line stem cell
division" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045448 "mitotic cell
cycle, embryonic" evidence=IMP] [GO:0007279 "pole cell formation"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0007367 "segment polarity determination" evidence=IGI]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0070883
"pre-miRNA binding" evidence=IDA] [GO:0003727 "single-stranded RNA
binding" evidence=IDA] [GO:0030727 "germarium-derived female
germ-line cyst formation" evidence=IMP] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0007294
GO:GO:0045448 GO:GO:0046872 GO:GO:0003727 GO:GO:0048813
GO:GO:0003725 GO:GO:0004386 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0033227 GO:GO:0007279 GO:GO:0030422
GO:GO:0007367 GO:GO:0035087 GO:GO:0030727 GO:GO:0042078 KO:K11592
Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:42693
GeneTree:ENSGT00510000046789 EMBL:AY050230 RefSeq:NP_524453.1
UniGene:Dm.1283 ProteinModelPortal:Q9VCU9 SMR:Q9VCU9 DIP:DIP-23028N
IntAct:Q9VCU9 MINT:MINT-923321 STRING:Q9VCU9 PaxDb:Q9VCU9
PRIDE:Q9VCU9 EnsemblMetazoa:FBtr0084324 GeneID:42693
KEGG:dme:Dmel_CG4792 UCSC:CG4792-RA FlyBase:FBgn0039016
eggNOG:COG0571 InParanoid:Q9VCU9 OMA:FLTPRYV OrthoDB:EOG44B8H0
PhylomeDB:Q9VCU9 GenomeRNAi:42693 NextBio:830091 Bgee:Q9VCU9
GermOnline:CG4792 GO:GO:0016443 GO:GO:0070883 Uniprot:Q9VCU9
Length = 2249
Score = 311 (114.5 bits), Expect = 7.1e-37, Sum P(3) = 7.1e-37
Identities = 62/135 (45%), Positives = 88/135 (65%)
Query: 98 PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
P LD L + + E+ + Y F+D+S+LLQA++H +Y NR+T YQRLEFLGDA
Sbjct: 1980 PNATEELDQL--LSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDA 2037
Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
++D+L+T +LYE+ SPG ++D+RSA+VNN FAS AVR HK H SP L + +
Sbjct: 2038 VLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVID 2097
Query: 218 RFAQNQEARNHEISD 232
RF + Q+ H IS+
Sbjct: 2098 RFVRIQQENGHCISE 2112
Score = 104 (41.7 bits), Expect = 2.6e-05, Sum P(3) = 2.6e-05
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 128 SFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMV 187
S +LQAL+ NAN + +RLE +GD+ + + +T YLY + ++ G++S +RS V
Sbjct: 1724 SIILQALTMS--NAND-GINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQV 1780
Query: 188 NNVTFASYAVRLDLHKHLL 206
N+ R L ++++
Sbjct: 1781 ANLNLYRLGRRKRLGEYMI 1799
Score = 99 (39.9 bits), Expect = 7.1e-37, Sum P(3) = 7.1e-37
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 33 YNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNI 75
YN + + + DK +AD VE+L G YL CG GA+LF+ L +
Sbjct: 1890 YNLVSQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGV 1932
Score = 62 (26.9 bits), Expect = 7.1e-37, Sum P(3) = 7.1e-37
Identities = 12/16 (75%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E V+VPKALGDVFE++
Sbjct: 2126 EDVEVPKALGDVFESI 2141
Score = 60 (26.2 bits), Expect = 8.0e-33, Sum P(3) = 8.0e-33
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 13 QDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVE 51
+D T +GK ++ EK P+S LD+ DKV +E
Sbjct: 1322 KDDTINGKDLADVEKKPTSEETQLDKDSKDDKVEKSAIE 1360
>UNIPROTKB|A0MQH0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:10029
"Cricetulus griseus" [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1
ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239
Uniprot:A0MQH0
Length = 1917
Score = 302 (111.4 bits), Expect = 8.3e-37, Sum P(3) = 8.3e-37
Identities = 62/130 (47%), Positives = 87/130 (66%)
Query: 98 PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
P+ + L+ L I EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDA
Sbjct: 1648 PDAEKTLNHL--ISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDA 1705
Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
I+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L+ +
Sbjct: 1706 ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVID 1765
Query: 218 RFAQNQEARN 227
F Q Q +N
Sbjct: 1766 DFVQFQLEKN 1775
Score = 107 (42.7 bits), Expect = 8.3e-37, Sum P(3) = 8.3e-37
Identities = 33/85 (38%), Positives = 47/85 (55%)
Query: 8 DFDL-YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA 66
DF + + +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A
Sbjct: 1518 DFVVGFWNPSEENCGVDTGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAA 1575
Query: 67 MLFLQALN--ILPQSKIDVHE-ALY 88
LFL +L +LP K E ALY
Sbjct: 1576 QLFLCSLGLKVLPVIKRTSREKALY 1600
Score = 60 (26.2 bits), Expect = 8.3e-37, Sum P(3) = 8.3e-37
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 1795 EDIEVPKAMGDIFESL 1810
>UNIPROTKB|B3DLA6 [details] [associations]
symbol:dicer1 "Endoribonuclease Dicer" species:8364
"Xenopus (Silurana) tropicalis" [GO:0016442 "RNA-induced silencing
complex" evidence=ISS] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EU338242 EMBL:BC167373 RefSeq:NP_001123390.2
UniGene:Str.39540 STRING:B3DLA6 GeneID:100170154 KEGG:xtr:100170154
Xenbase:XB-GENE-491114 Uniprot:B3DLA6
Length = 1893
Score = 307 (113.1 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 63/130 (48%), Positives = 87/130 (66%)
Query: 98 PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
P+ + LD L I EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDA
Sbjct: 1624 PDAEKTLDHL--ISGFENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDA 1681
Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
I+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L+ +
Sbjct: 1682 ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVID 1741
Query: 218 RFAQNQEARN 227
F Q Q +N
Sbjct: 1742 DFVQFQLEKN 1751
Score = 99 (39.9 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 27/74 (36%), Positives = 42/74 (56%)
Query: 8 DFDL-YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA 66
DF + + +P+E+ + ++ S SY+ + DK +AD VE+L G YL SCG A
Sbjct: 1496 DFVVGFWNPSEENCGADAGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAA 1553
Query: 67 MLFLQALN--ILPQ 78
LFL +L +LP+
Sbjct: 1554 QLFLCSLGLKVLPE 1567
Score = 60 (26.2 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 1771 EDIEVPKAMGDIFESL 1786
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 304 (112.1 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 64/130 (49%), Positives = 86/130 (66%)
Query: 98 PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
PE R L L I EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDA
Sbjct: 1654 PEADRTLRHL--ISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDA 1711
Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
I+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L+ +
Sbjct: 1712 ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVID 1771
Query: 218 RFAQNQEARN 227
F Q Q +N
Sbjct: 1772 DFVQFQLEKN 1781
Score = 102 (41.0 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 8 DFDL-YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA 66
DF + + +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A
Sbjct: 1523 DFVVGFWNPSEENCGVDTGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAA 1580
Query: 67 MLFLQALN--ILPQSK 80
LFL +L +LP K
Sbjct: 1581 QLFLCSLGLKVLPVIK 1596
Score = 60 (26.2 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 1801 EDIEVPKAMGDIFESL 1816
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 301 (111.0 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 58/111 (52%), Positives = 80/111 (72%)
Query: 117 EKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSP 176
EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDAI+D+L+T +LYE+ SP
Sbjct: 1670 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1729
Query: 177 GEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARN 227
G ++D+RSA+VNN FAS AV+ D HK+ SP L+ + F Q Q +N
Sbjct: 1730 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKN 1780
Score = 104 (41.7 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 8 DFDL-YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA 66
DF + + +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A
Sbjct: 1522 DFVVGFWNPSEENCGVDTGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAA 1579
Query: 67 MLFLQALN--ILPQSK-IDVHEAL 87
LFL +L +LP K D +AL
Sbjct: 1580 QLFLCSLGLKVLPVIKRTDREKAL 1603
Score = 60 (26.2 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 1800 EDIEVPKAMGDIFESL 1815
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 301 (111.0 bits), Expect = 3.5e-36, Sum P(3) = 3.5e-36
Identities = 58/111 (52%), Positives = 80/111 (72%)
Query: 117 EKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSP 176
EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDAI+D+L+T +LYE+ SP
Sbjct: 1668 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1727
Query: 177 GEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARN 227
G ++D+RSA+VNN FAS AV+ D HK+ SP L+ + F Q Q +N
Sbjct: 1728 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKN 1778
Score = 102 (41.0 bits), Expect = 3.5e-36, Sum P(3) = 3.5e-36
Identities = 29/76 (38%), Positives = 43/76 (56%)
Query: 8 DFDL-YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA 66
DF + + +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A
Sbjct: 1520 DFVVGFWNPSEENCGVDTGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAA 1577
Query: 67 MLFLQALN--ILPQSK 80
LFL +L +LP K
Sbjct: 1578 QLFLCSLGLKVLPVIK 1593
Score = 60 (26.2 bits), Expect = 3.5e-36, Sum P(3) = 3.5e-36
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 1798 EDIEVPKAMGDIFESL 1813
>MGI|MGI:2177178 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IMP] [GO:0001932 "regulation of protein phosphorylation"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005793 "endoplasmic reticulum-Golgi
intermediate compartment" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008593 "regulation of Notch signaling pathway" evidence=IC]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070
"zygote asymmetric cell division" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010626 "negative
regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0014040
"positive regulation of Schwann cell differentiation" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021675 "nerve development"
evidence=IMP] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030324 "lung development"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO;IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing
by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis"
evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP]
[GO:0031643 "positive regulation of myelination" evidence=IMP]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IMP] [GO:0042981 "regulation of
apoptotic process" evidence=IMP] [GO:0043066 "negative regulation
of apoptotic process" evidence=IMP] [GO:0045069 "regulation of
viral genome replication" evidence=IMP] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] [GO:0045664 "regulation of
neuron differentiation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048536 "spleen development" evidence=IMP] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0048713 "regulation
of oligodendrocyte differentiation" evidence=IMP] [GO:0048730
"epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] [GO:0050767
"regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP]
[GO:0055013 "cardiac muscle cell development" evidence=IMP]
[GO:0060119 "inner ear receptor cell development" evidence=IMP]
[GO:0060253 "negative regulation of glial cell proliferation"
evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
evidence=IGI] [GO:0070173 "regulation of enamel mineralization"
evidence=IMP] [GO:0071335 "hair follicle cell proliferation"
evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 GO:GO:0005524
GO:GO:0010070 GO:GO:0005737 GO:GO:0006915 GO:GO:0021987
GO:GO:0043066 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0060576 GO:GO:0021889
GO:GO:0032290 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173
GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470
EMBL:AF430845 IPI:IPI00227881 UniGene:Mm.21135 PDB:3C4B PDB:3C4T
PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418
DIP:DIP-29721N IntAct:Q8R418 STRING:Q8R418 PhosphoSite:Q8R418
PaxDb:Q8R418 PRIDE:Q8R418 UCSC:uc007oxi.1 InParanoid:Q8R419
EvolutionaryTrace:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418
GermOnline:ENSMUSG00000041415 GO:GO:0060119 GO:GO:2000630
GO:GO:0008593 Uniprot:Q8R418
Length = 1916
Score = 297 (109.6 bits), Expect = 5.7e-36, Sum P(3) = 5.7e-36
Identities = 57/111 (51%), Positives = 80/111 (72%)
Query: 117 EKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSP 176
EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDAI+D+L+T +LYE+ SP
Sbjct: 1664 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1723
Query: 177 GEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARN 227
G ++D+RSA+VNN FAS AV+ D HK+ SP L+ + F + Q +N
Sbjct: 1724 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKN 1774
Score = 104 (41.7 bits), Expect = 5.7e-36, Sum P(3) = 5.7e-36
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 8 DFDL-YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA 66
DF + + +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A
Sbjct: 1518 DFVVGFWNPSEENCGVDTGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAA 1575
Query: 67 MLFLQALN--ILPQSKIDVHEALYGP 90
LFL +L +LP K E P
Sbjct: 1576 QLFLCSLGLKVLPVIKRTSREKALDP 1601
Score = 60 (26.2 bits), Expect = 5.7e-36, Sum P(3) = 5.7e-36
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 1794 EDIEVPKAMGDIFESL 1809
>FB|FBgn0034246 [details] [associations]
symbol:Dcr-2 "Dicer-2" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS;NAS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS;NAS] [GO:0016246
"RNA interference" evidence=IMP;NAS;IDA;TAS] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IMP;IDA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0035087 "siRNA
loading onto RISC involved in RNA interference" evidence=IMP]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006342 "chromatin
silencing" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP] [GO:0009597 "detection of
virus" evidence=IMP] [GO:0016442 "RNA-induced silencing complex"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0007626 "locomotory
behavior" evidence=IMP] [GO:0035197 "siRNA binding" evidence=IDA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE013599 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0007626 GO:GO:0016887 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 GO:GO:0035197 GO:GO:0016442 GO:GO:0033227
GO:GO:0070868 GO:GO:0030422 GO:GO:0035087 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0006379 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 GO:GO:0009597
EMBL:BT128787 RefSeq:NP_523778.2 UniGene:Dm.7764 SMR:A1ZAW0
DIP:DIP-54444N IntAct:A1ZAW0 STRING:A1ZAW0
EnsemblMetazoa:FBtr0086904 GeneID:36993 KEGG:dme:Dmel_CG6493
UCSC:CG6493-RA CTD:36993 FlyBase:FBgn0034246 InParanoid:A1ZAW0
OrthoDB:EOG4DJHB9 GenomeRNAi:36993 NextBio:801402 Uniprot:A1ZAW0
Length = 1722
Score = 364 (133.2 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 77/205 (37%), Positives = 127/205 (61%)
Query: 30 SSSYNF-LDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVH-EAL 87
SS NF + + + +KV+AD +E+L GV +++ G++ A L+ I ++ ID L
Sbjct: 1349 SSEVNFCVGLVTIPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKIC-RADIDKPLTQL 1407
Query: 88 YGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTS 147
+ + ++ LEK + YTF+D+ +LLQAL+HP+Y NRIT S
Sbjct: 1408 LNLELGGKKMRANVNTTEIDGFLINHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGS 1467
Query: 148 YQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLH 207
YQ LEF+GDAI+DFL++AY++EN + ++PG ++D+RSA+VNN T A VR LH +L
Sbjct: 1468 YQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILA 1527
Query: 208 DSPRLYENVTRFAQNQEARNHEISD 232
++ +L E +++F QE++ H +++
Sbjct: 1528 ENAKLSEIISKFVNFQESQGHRVTN 1552
Score = 66 (28.3 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 13/15 (86%), Positives = 14/15 (93%)
Query: 269 VDVPKALGDVFEALV 283
VDVPKALGDV EAL+
Sbjct: 1606 VDVPKALGDVLEALI 1620
>RGD|1309381 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=ISO] [GO:0001932 "regulation of
protein phosphorylation" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004525 "ribonuclease III activity" evidence=ISO]
[GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment"
evidence=IDA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0009791 "post-embryonic development"
evidence=ISO] [GO:0010070 "zygote asymmetric cell division"
evidence=ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISO] [GO:0010628 "positive regulation of
gene expression" evidence=ISO] [GO:0014040 "positive regulation of
Schwann cell differentiation" evidence=ISO] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=ISO] [GO:0021675 "nerve
development" evidence=ISO] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=ISO] [GO:0021987 "cerebral cortex
development" evidence=ISO] [GO:0030324 "lung development"
evidence=ISO] [GO:0030326 "embryonic limb morphogenesis"
evidence=ISO] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=IDA] [GO:0030425 "dendrite" evidence=IDA]
[GO:0030426 "growth cone" evidence=IDA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0031069 "hair follicle morphogenesis"
evidence=ISO] [GO:0031641 "regulation of myelination" evidence=ISO]
[GO:0031643 "positive regulation of myelination" evidence=ISO]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0035198 "miRNA binding"
evidence=ISO] [GO:0035264 "multicellular organism growth"
evidence=ISO] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=ISO] [GO:0042981 "regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0045069 "regulation of
viral genome replication" evidence=ISO] [GO:0045595 "regulation of
cell differentiation" evidence=ISO] [GO:0045664 "regulation of
neuron differentiation" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048536 "spleen development" evidence=ISO]
[GO:0048565 "digestive tract development" evidence=ISO] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=ISO]
[GO:0048730 "epidermis morphogenesis" evidence=ISO] [GO:0048754
"branching morphogenesis of an epithelial tube" evidence=ISO]
[GO:0048812 "neuron projection morphogenesis" evidence=ISO]
[GO:0050767 "regulation of neurogenesis" evidence=ISO] [GO:0051225
"spindle assembly" evidence=ISO] [GO:0051607 "defense response to
virus" evidence=ISO] [GO:0051726 "regulation of cell cycle"
evidence=ISO] [GO:0055013 "cardiac muscle cell development"
evidence=ISO] [GO:0060119 "inner ear receptor cell development"
evidence=ISO] [GO:0060253 "negative regulation of glial cell
proliferation" evidence=ISO] [GO:0060576 "intestinal epithelial
cell development" evidence=ISO] [GO:0070173 "regulation of enamel
mineralization" evidence=ISO] [GO:0071335 "hair follicle cell
proliferation" evidence=ISO] [GO:2000630 "positive regulation of
miRNA metabolic process" evidence=ISO] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1309381 GO:GO:0030424 GO:GO:0030425 Gene3D:3.30.160.20
GO:GO:0030426 GO:GO:0003725 GO:GO:0005793 GO:GO:0010626
eggNOG:COG1111 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
GO:GO:0031643 GO:GO:0014040 HOVERGEN:HBG092134 IPI:IPI00365891
EMBL:BC098796 UniGene:Rn.205881 STRING:Q4G034 PhosphoSite:Q4G034
UCSC:RGD:1309381 InParanoid:Q4G034 Genevestigator:Q4G034
Uniprot:Q4G034
Length = 401
Score = 302 (111.4 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 62/130 (47%), Positives = 87/130 (66%)
Query: 98 PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
P+ + L+ L I EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDA
Sbjct: 132 PDAEKTLNHL--ISGFENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDA 189
Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
I+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L+ +
Sbjct: 190 ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVID 249
Query: 218 RFAQNQEARN 227
F Q Q +N
Sbjct: 250 DFVQFQLEKN 259
Score = 103 (41.3 bits), Expect = 6.0e-05, Sum P(2) = 6.0e-05
Identities = 59/212 (27%), Positives = 90/212 (42%)
Query: 8 DFDL-YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA 66
DF + + +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A
Sbjct: 3 DFVVGFWNPSEENCGVDTGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAA 60
Query: 67 MLFLQALN--ILPQSKIDVHE-ALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYT 123
LFL +L +LP K + A Y ++ + G P + K + Y
Sbjct: 61 QLFLCSLGLKVLPVIKRTSRDKASYPAQENSSSQQKSPSGSCAAAVSPR-SSAGKDLEYG 119
Query: 124 FQDKSFLLQALSHPTYNA--NRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISD 181
K HP N + + ++ E + I F AYL + F+H S +
Sbjct: 120 CL-KIPPRCMFDHPDAEKTLNHLISGFENFEKKINYI--FKNKAYLLQAFTHASY-HYNT 175
Query: 182 IRSAMVNNVTFASYAVRLD--LHKHLLHDSPR 211
I + F A+ LD + KHL D PR
Sbjct: 176 ITDCY-QRLEFLGDAI-LDYLITKHLYED-PR 204
Score = 60 (26.2 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 279 EDIEVPKAMGDIFESL 294
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 361 (132.1 bits), Expect = 1.7e-31, P = 1.7e-31
Identities = 85/253 (33%), Positives = 142/253 (56%)
Query: 33 YNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQ--ALNILPQS-KIDVHEALYG 89
YN L + + DK +AD VE+L GV+L + G + + L ++ + K DV L
Sbjct: 1560 YNLLTQQHISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKVIQKDQKSDVPSPLLR 1619
Query: 90 PHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQ 149
+ L+ L + TQLE++I Y F+++++L+QA +H +Y NR+T YQ
Sbjct: 1620 FIDTPTNPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQ 1679
Query: 150 RLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDS 209
RLEFLGDA++D+++T YL+E+ SPG ++D+RSA+VNN FAS AV+ + KH +
Sbjct: 1680 RLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMC 1739
Query: 210 PRLYENVTRFAQNQEARNHEISDXXXXXXXXXGIVRCLIFFLIEEKDVQTDVYGRVVEYV 269
P LY + +F + RN + + ++ + E+++ G+ E +
Sbjct: 1740 PGLYHMIEKFVKLCSERNFDTN------------FNAEMYMVTTEEEIDE---GQE-EDI 1783
Query: 270 DVPKALGDVFEAL 282
+VPKA+GD+FE++
Sbjct: 1784 EVPKAMGDIFESV 1796
>UNIPROTKB|F1NJX0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0005524
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00818350 EMBL:AADN02003674
Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0
Length = 1921
Score = 305 (112.4 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 62/130 (47%), Positives = 88/130 (67%)
Query: 98 PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
P+ + L+ L I EK+INY+F++K++LLQA +H +Y+ N IT YQRLEFLGDA
Sbjct: 1652 PDAEKTLNHL--ISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDA 1709
Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
I+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L+ +
Sbjct: 1710 ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVID 1769
Query: 218 RFAQNQEARN 227
F Q Q +N
Sbjct: 1770 DFVQFQMEKN 1779
Score = 111 (44.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 61/217 (28%), Positives = 90/217 (41%)
Query: 8 DFDL-YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA 66
DF + + +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A
Sbjct: 1521 DFVVGFWNPSEENCGVDAGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAA 1578
Query: 67 MLFLQALN--ILPQ-SKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECT-----QLEK 118
LFL +L +LP K D L + C + + L P + C L K
Sbjct: 1579 QLFLCSLGLKVLPVIKKTDWESTLCA---TGENCNSEQKNLSP-NSVSACIVNSEPSLYK 1634
Query: 119 RINYTFQDKSFLLQALSHPTYNA--NRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSP 176
+ Y K HP N + + ++ E F AYL + F+H S
Sbjct: 1635 DLEYGCL-KIPPRCMFDHPDAEKTLNHLISGFENFE--KKINYSFKNKAYLLQAFTHASY 1691
Query: 177 GEISDIRSAMVNNVTFASYAVRLD--LHKHLLHDSPR 211
+ I + F A+ LD + KHL D PR
Sbjct: 1692 -HYNTITDCY-QRLEFLGDAI-LDYLITKHLYED-PR 1724
Score = 60 (26.2 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 1799 EDIEVPKAMGDIFESL 1814
>UNIPROTKB|Q25BN1 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISS]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=ISS] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768
IPI:IPI00818350 RefSeq:NP_001035555.1 UniGene:Gga.33735
ProteinModelPortal:Q25BN1 SMR:Q25BN1 STRING:Q25BN1 GeneID:423437
KEGG:gga:423437 NextBio:20825910 Uniprot:Q25BN1
Length = 1921
Score = 305 (112.4 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 62/130 (47%), Positives = 88/130 (67%)
Query: 98 PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
P+ + L+ L I EK+INY+F++K++LLQA +H +Y+ N IT YQRLEFLGDA
Sbjct: 1652 PDAEKTLNHL--ISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDA 1709
Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
I+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L+ +
Sbjct: 1710 ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVID 1769
Query: 218 RFAQNQEARN 227
F Q Q +N
Sbjct: 1770 DFVQFQMEKN 1779
Score = 111 (44.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 61/217 (28%), Positives = 90/217 (41%)
Query: 8 DFDL-YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA 66
DF + + +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A
Sbjct: 1521 DFVVGFWNPSEENCGVDAGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAA 1578
Query: 67 MLFLQALN--ILPQ-SKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECT-----QLEK 118
LFL +L +LP K D L + C + + L P + C L K
Sbjct: 1579 QLFLCSLGLKVLPVIKKTDWESTLCA---TGENCNSEQKNLSP-NSVSACIVNSEPSLYK 1634
Query: 119 RINYTFQDKSFLLQALSHPTYNA--NRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSP 176
+ Y K HP N + + ++ E F AYL + F+H S
Sbjct: 1635 DLEYGCL-KIPPRCMFDHPDAEKTLNHLISGFENFE--KKINYSFKNKAYLLQAFTHASY 1691
Query: 177 GEISDIRSAMVNNVTFASYAVRLD--LHKHLLHDSPR 211
+ I + F A+ LD + KHL D PR
Sbjct: 1692 -HYNTITDCY-QRLEFLGDAI-LDYLITKHLYED-PR 1724
Score = 60 (26.2 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 1799 EDIEVPKAMGDIFESL 1814
>UNIPROTKB|F1NP11 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010070 "zygote asymmetric cell division"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0043066 GO:GO:0051225 GO:GO:0045595
Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0000122 GO:GO:0051726
GO:GO:0003725 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0008026
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 OMA:FLEYDQE GO:GO:0071335
GO:GO:0031643 GO:GO:0070173 EMBL:AADN02003674 IPI:IPI00603674
Ensembl:ENSGALT00000017910 ArrayExpress:F1NP11 Uniprot:F1NP11
Length = 1925
Score = 305 (112.4 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 62/130 (47%), Positives = 88/130 (67%)
Query: 98 PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
P+ + L+ L I EK+INY+F++K++LLQA +H +Y+ N IT YQRLEFLGDA
Sbjct: 1656 PDAEKTLNHL--ISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDA 1713
Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
I+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L+ +
Sbjct: 1714 ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVID 1773
Query: 218 RFAQNQEARN 227
F Q Q +N
Sbjct: 1774 DFVQFQMEKN 1783
Score = 111 (44.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 61/217 (28%), Positives = 90/217 (41%)
Query: 8 DFDL-YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA 66
DF + + +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A
Sbjct: 1525 DFVVGFWNPSEENCGVDAGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAA 1582
Query: 67 MLFLQALN--ILPQ-SKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECT-----QLEK 118
LFL +L +LP K D L + C + + L P + C L K
Sbjct: 1583 QLFLCSLGLKVLPVIKKTDWESTLCA---TGENCNSEQKNLSP-NSVSACIVNSEPSLYK 1638
Query: 119 RINYTFQDKSFLLQALSHPTYNA--NRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSP 176
+ Y K HP N + + ++ E F AYL + F+H S
Sbjct: 1639 DLEYGCL-KIPPRCMFDHPDAEKTLNHLISGFENFE--KKINYSFKNKAYLLQAFTHASY 1695
Query: 177 GEISDIRSAMVNNVTFASYAVRLD--LHKHLLHDSPR 211
+ I + F A+ LD + KHL D PR
Sbjct: 1696 -HYNTITDCY-QRLEFLGDAI-LDYLITKHLYED-PR 1728
Score = 60 (26.2 bits), Expect = 1.3e-28, Sum P(2) = 1.3e-28
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 1803 EDIEVPKAMGDIFESL 1818
>TAIR|locus:2097705 [details] [associations]
symbol:DCL2 "dicer-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010216 "maintenance of DNA methylation"
evidence=IMP] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA;IMP] [GO:0051607 "defense response to
virus" evidence=RCA;IMP] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=IGI;RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA] [GO:0010073
"meristem maintenance" evidence=RCA] [GO:0016569 "covalent
chromatin modification" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0051607 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0010267 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC012328 GO:GO:0010216 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ479970
EMBL:DQ479971 IPI:IPI00530074 IPI:IPI00852241 RefSeq:NP_001078101.1
RefSeq:NP_001189798.1 RefSeq:NP_566199.4 UniGene:At.43488
ProteinModelPortal:Q3EBC8 SMR:Q3EBC8 IntAct:Q3EBC8 STRING:Q3EBC8
PaxDb:Q3EBC8 PRIDE:Q3EBC8 EnsemblPlants:AT3G03300.1
EnsemblPlants:AT3G03300.3 GeneID:821300 KEGG:ath:AT3G03300
TAIR:At3g03300 HOGENOM:HOG000006099 InParanoid:Q3EBC8 OMA:TAIVLES
PhylomeDB:Q3EBC8 ProtClustDB:CLSN2694055 Genevestigator:Q3EBC8
Uniprot:Q3EBC8
Length = 1388
Score = 317 (116.6 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 78/194 (40%), Positives = 116/194 (59%)
Query: 26 EKLPSSSYNFL-DRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVH 84
+ LP S ++ R L K VADVVESL G YL G A++F+ + I K+D
Sbjct: 1076 DTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGI----KVDFT 1131
Query: 85 EALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRI 144
S P QA L + Y +E +NY+F+DKS L++AL+H +Y I
Sbjct: 1132 TTKI-QRDS----PIQAEKLVNVGY------MESLLNYSFEDKSLLVEALTHGSYMMPEI 1180
Query: 145 TTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKH 204
YQRLEFLGD+++D+L+T +LY+ + LSPG ++D+RSA VNN +A AV+ +LHKH
Sbjct: 1181 PRCYQRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKH 1240
Query: 205 LLHDSPRLYENVTR 218
+L+ S L+++++R
Sbjct: 1241 ILYASHHLHKHISR 1254
Score = 44 (20.5 bits), Expect = 1.4e-28, Sum P(2) = 1.4e-28
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 269 VDVPKALGDVFEAL 282
+ PK LGDV E+L
Sbjct: 1274 ISFPKVLGDVIESL 1287
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 302 (111.4 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 62/130 (47%), Positives = 87/130 (66%)
Query: 98 PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
P+ + L+ L I EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDA
Sbjct: 1639 PDAEKTLNHL--ISGFENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDA 1696
Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
I+D+L+T +LYE+ SPG ++D+RSA+VNN FAS AV+ D HK+ SP L+ +
Sbjct: 1697 ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVID 1756
Query: 218 RFAQNQEARN 227
F Q Q +N
Sbjct: 1757 DFVQFQLEKN 1766
Score = 60 (26.2 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 1786 EDIEVPKAMGDIFESL 1801
>UNIPROTKB|E2RIN4 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000630 "positive regulation of miRNA
metabolic process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 CTD:23405 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:AAEX03005955 RefSeq:XP_868526.2
Ensembl:ENSCAFT00000028082 GeneID:480426 KEGG:cfa:480426
Uniprot:E2RIN4
Length = 1923
Score = 301 (111.0 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 58/111 (52%), Positives = 80/111 (72%)
Query: 117 EKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSP 176
EK+INY F++K++LLQA +H +Y+ N IT YQRLEFLGDAI+D+L+T +LYE+ SP
Sbjct: 1671 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1730
Query: 177 GEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARN 227
G ++D+RSA+VNN FAS AV+ D HK+ SP L+ + F Q Q +N
Sbjct: 1731 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKN 1781
Score = 60 (26.2 bits), Expect = 3.4e-28, Sum P(2) = 3.4e-28
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 267 EYVDVPKALGDVFEAL 282
E ++VPKA+GD+FE+L
Sbjct: 1801 EDIEVPKAMGDIFESL 1816
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 287 (106.1 bits), Expect = 5.4e-25, Sum P(2) = 5.4e-25
Identities = 70/187 (37%), Positives = 105/187 (56%)
Query: 44 KVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHE-ALYGPHPSAVRCPEQAR 102
KV+ADVVESL G +L G + A FL + I +D + ALY S+ +
Sbjct: 1155 KVIADVVESLIGAFLVEGGFKAAFAFLHWIGI----DVDFNNPALYRVLDSS------SI 1204
Query: 103 GLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFL 162
L + Y + LE+ I Y F+ K LLQA HP+++ + YQRLEFLGDA+++++
Sbjct: 1205 NLSLMDYT-DIAGLEELIGYKFKHKGLLLQAFVHPSFSQHS-GGCYQRLEFLGDAVLEYV 1262
Query: 163 VTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQN 222
+T+YLY + + PG+I+D+RS V N + A AV +HKHL+ DS L +++F
Sbjct: 1263 ITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKFEMY 1322
Query: 223 QEARNHE 229
+ N E
Sbjct: 1323 VKLSNSE 1329
Score = 42 (19.8 bits), Expect = 5.4e-25, Sum P(2) = 5.4e-25
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 272 PKALGDVFEALV 283
PKALGD+ E+ +
Sbjct: 1339 PKALGDIVESCI 1350
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 266 (98.7 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 65/172 (37%), Positives = 96/172 (55%)
Query: 44 KVVADVVESLTGVYLRSCGIEGAMLFLQALNI-LPQSKIDVHEALYGPHPSAVRCPEQAR 102
K +ADVVE+L G +L G +GA+ FL+ + + + + V +A C R
Sbjct: 1233 KTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDA----------CIASRR 1282
Query: 103 GLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFL 162
L PL LE +++Y F K L+QA HP+YN + YQRLEFLGDA++D+L
Sbjct: 1283 YL-PLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHG-GGCYQRLEFLGDAVLDYL 1340
Query: 163 VTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYE 214
+T+Y + F L PG+++D+RS VNN A+ AV L + L +S L+E
Sbjct: 1341 MTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHE 1392
>UNIPROTKB|Q8LMR2 [details] [associations]
symbol:DCL1 "Endoribonuclease Dicer homolog 1"
species:39947 "Oryza sativa Japonica Group" [GO:0007275
"multicellular organismal development" evidence=IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
Pfam:PF00035 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 Gene3D:3.30.160.20
EMBL:DP000009 EMBL:AP008209 GO:GO:0003725 GO:GO:0090305
GO:GO:0004386 SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000140 EMBL:AC105363 RefSeq:NP_001048796.2
UniGene:Os.13488 HSSP:P66666 ProteinModelPortal:Q8LMR2 PRIDE:Q8LMR2
EnsemblPlants:LOC_Os03g02970.1 GeneID:4331440
KEGG:dosa:Os03t0121800-00 KEGG:dosa:Os03t0121901-00
KEGG:osa:4331440 Gramene:Q8LMR2 eggNOG:COG1111 HOGENOM:HOG000239675
KO:K11592 OMA:ITHASRP GO:GO:0004525 GO:GO:0035196
Gene3D:1.10.1520.10 SUPFAM:SSF69065 Uniprot:Q8LMR2
Length = 1883
Score = 252 (93.8 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
Identities = 66/185 (35%), Positives = 104/185 (56%)
Query: 41 LGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQ 100
L K +ADVVE+L GVY + G A ++ + I +++D E P P PE
Sbjct: 1477 LSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGI--HAELDPEEI---PPPKPYDIPES 1531
Query: 101 ARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIID 160
+R I T L+ + FQ+K L++A++H + ++ ++ YQRLEF+GDA++D
Sbjct: 1532 I-----MRSINFDT-LKGVLGIEFQNKGLLVEAITHASRPSSGVSC-YQRLEFVGDAVLD 1584
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFA 220
L+T +L+ ++ L PG ++D+R+A VNN FA AV+ LH HL H S L + F
Sbjct: 1585 HLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFV 1644
Query: 221 QN-QE 224
++ QE
Sbjct: 1645 KDVQE 1649
Score = 38 (18.4 bits), Expect = 9.3e-21, Sum P(2) = 9.3e-21
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 272 PKALGDVFEAL 282
PK LGD+ E++
Sbjct: 1667 PKVLGDIVESI 1677
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 225 (84.3 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 54/194 (27%), Positives = 106/194 (54%)
Query: 40 KLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPE 99
KL K +AD+VE+ G L G++ A+ ++L++ +D+ + +
Sbjct: 1016 KLSVKRIADMVEASIGACLLDSGLDSALKICKSLSV---GLLDISN--WDEWNNYFDLNT 1070
Query: 100 QARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANR-ITTSYQRLEFLGDAI 158
A L +++ P + +E+ I Y+F++K L A HP+ + + I +YQ+LEFLGDA+
Sbjct: 1071 YADSLRNVQF-PYSSYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAV 1129
Query: 159 IDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTR 218
+D+++ YLY+ + + + GE++D +S V N + + L+LHK++ H+S + + +
Sbjct: 1130 LDYIIVQYLYKKYPNATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFE 1189
Query: 219 FAQNQEARNHEISD 232
+ + EA S+
Sbjct: 1190 YQELIEAFRETASE 1203
Score = 39 (18.8 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 269 VDVPKALGDVFEALV 283
+D PK + D EA++
Sbjct: 1211 IDSPKFISDTLEAMI 1225
>TIGR_CMR|CJE_1807 [details] [associations]
symbol:CJE_1807 "ribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_179777.1 ProteinModelPortal:Q5HSF8
STRING:Q5HSF8 GeneID:3232434 KEGG:cjr:CJE1807 PATRIC:20045436
BioCyc:CJEJ195099:GJC0-1841-MONOMER Uniprot:Q5HSF8
Length = 224
Score = 173 (66.0 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 34/87 (39%), Positives = 59/87 (67%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
+LE+ + Y F+DK+ L+ AL+H ++ + + +RLEFLGDA++D +V YL+ F+
Sbjct: 6 KLERSLTYEFKDKNLLIHALTHKSFKKSY---NNERLEFLGDAVLDLVVGEYLFHKFAKD 62
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDL 201
+ G++S +R+A+VN +FA A L+L
Sbjct: 63 AEGDLSKLRAALVNEKSFAKIANSLNL 89
>ASPGD|ASPL0000041548 [details] [associations]
symbol:dclB species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001650
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
GO:GO:0005524 GO:GO:0046872 EMBL:BN001306 GO:GO:0051607
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AACD01000052
ProteinModelPortal:P0C5H7 HOGENOM:HOG000048683 OrthoDB:EOG4JWZNK
Uniprot:P0C5H7
Length = 1429
Score = 196 (74.1 bits), Expect = 4.8e-13, P = 4.8e-13
Identities = 55/169 (32%), Positives = 88/169 (52%)
Query: 20 KKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQS 79
+K S+P + Y + KV+ADVVE+L G G+ A + + LP+
Sbjct: 973 RKWSAP-LISEKLYASASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCI--VRFLPE- 1028
Query: 80 KIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTY 139
I++ E P P ++ P P ++ + LE I YTF+DK+ L++AL+HP+
Sbjct: 1029 -IELPETKL-PRPESM--PMSKDHKKP--HLIQQENLENHIGYTFKDKTLLMEALTHPSC 1082
Query: 140 NANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVN 188
+ SYQRLEFLGDA++D L+ + + GE++ I+ A+VN
Sbjct: 1083 PYDTSIQSYQRLEFLGDAVLDMLIVDLIRAHHVECQQGEMTKIKHAIVN 1131
>TAIR|locus:2092409 [details] [associations]
symbol:RTL2 "RNAse THREE-like protein 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS;IMP]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 EMBL:AB024036 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 HSSP:O67082
EMBL:AY042815 EMBL:AY081681 IPI:IPI00517285 RefSeq:NP_566661.1
UniGene:At.8183 ProteinModelPortal:Q9LTQ0 SMR:Q9LTQ0 IntAct:Q9LTQ0
EnsemblPlants:AT3G20420.1 GeneID:821587 KEGG:ath:AT3G20420
TAIR:At3g20420 HOGENOM:HOG000237951 InParanoid:Q9LTQ0 OMA:ANISTEK
PhylomeDB:Q9LTQ0 ProtClustDB:CLSN2688595 Genevestigator:Q9LTQ0
Uniprot:Q9LTQ0
Length = 391
Score = 169 (64.5 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 45/146 (30%), Positives = 75/146 (51%)
Query: 76 LPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALS 135
LP S D+H PSA P + ++ + + EK +NY F +KS L +A++
Sbjct: 31 LPSSA-DIHRFYNSLSPSAPSVPVSSE-MESMEAV------EKILNYKFSNKSLLKEAIT 82
Query: 136 HPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASY 195
H + SY+RLEF+GD+ I ++ YLY + L P ++S +R+A V+ A
Sbjct: 83 HTSCTD---FPSYERLEFIGDSAIGLAISNYLYLTYPSLEPHDLSLLRAANVSTEKLARV 139
Query: 196 AVRLDLHKHLLHDSPRLYENVTRFAQ 221
++ L+ L ++P L E V F++
Sbjct: 140 SLNHGLYSFLRRNAPSLDEKVKEFSE 165
Score = 46 (21.3 bits), Expect = 1.3e-11, Sum P(2) = 1.3e-11
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 253 EEKDVQTDVYGRVVEYVDVPKALGDVFEAL 282
+E D+ YG +V+ PK L D+FE+L
Sbjct: 169 KEDDLSVS-YGGLVK---APKVLADLFESL 194
>TAIR|locus:504955425 [details] [associations]
symbol:RTL1 "RNAse II-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004525
"ribonuclease III activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] InterPro:IPR000999 Pfam:PF00636 PROSITE:PS50142
SMART:SM00535 EMBL:CP002687 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 IPI:IPI00537607
RefSeq:NP_680697.4 UniGene:At.45352 ProteinModelPortal:F4JK37
SMR:F4JK37 PRIDE:F4JK37 EnsemblPlants:AT4G15417.1 GeneID:827212
KEGG:ath:AT4G15417 OMA:HRFLRHK PhylomeDB:F4JK37 Uniprot:F4JK37
Length = 264
Score = 164 (62.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 39/120 (32%), Positives = 66/120 (55%)
Query: 105 DPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVT 164
DP + + E LEK +NY F+DKS LL+A + +Y ++ + SY+ LE LGD+I++ +
Sbjct: 22 DPDQLM-EIESLEKILNYKFKDKSLLLKAFTDASYVDDK-SESYELLELLGDSILNMGII 79
Query: 165 AYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQE 224
+ + +PG ++ +R+ V+ A AV L+ +L H P L E + F + E
Sbjct: 80 YDFIKLYPKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAME 139
>FB|FBgn0026722 [details] [associations]
symbol:drosha "drosha" species:7227 "Drosophila melanogaster"
[GO:0031053 "primary miRNA processing" evidence=ISS;IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004525 "ribonuclease III
activity" evidence=ISS;NAS] [GO:0003725 "double-stranded RNA
binding" evidence=IEA;ISS] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030727
"germarium-derived female germ-line cyst formation" evidence=IMP]
[GO:0007294 "germarium-derived oocyte fate determination"
evidence=IMP] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 EMBL:AE013599 GO:GO:0007294 GO:GO:0022008
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0016075
GO:GO:0030727 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 HSSP:O67082 OMA:RFHKSLD
CTD:29102 ChiTaRS:DROSHA EMBL:AF116572 EMBL:BT023503
RefSeq:NP_477436.1 UniGene:Dm.4482 SMR:Q7KNF1 IntAct:Q7KNF1
STRING:Q7KNF1 EnsemblMetazoa:FBtr0088850 GeneID:35747
KEGG:dme:Dmel_CG8730 UCSC:CG8730-RA FlyBase:FBgn0026722
InParanoid:Q7KNF1 OrthoDB:EOG4BRV1K GenomeRNAi:35747 NextBio:795024
Uniprot:Q7KNF1
Length = 1327
Score = 170 (64.9 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 51/169 (30%), Positives = 84/169 (49%)
Query: 46 VADVVESLTGVYLRSCGIEGA-MLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARG- 103
+A+ E+L G L GI+ A +F AL + + + + L HP + P R
Sbjct: 907 MANCFEALMGALLLDGGIKVADEVFTDALFRQDEKLLSIWKNL-PEHPLQEQEPLGDRSC 965
Query: 104 LDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITT-SYQRLEFLGDAIIDFL 162
+D R + E T+ E I F+ L +A + + +T S QRLEFLGD ++ +
Sbjct: 966 IDSYRVLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLI 1025
Query: 163 VTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPR 211
+ YLY +F G +S +RS++VNN T A L + K+ ++ +P+
Sbjct: 1026 CSEYLYRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPK 1074
Score = 118 (46.6 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 29/77 (37%), Positives = 44/77 (57%)
Query: 146 TSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
T +RLEFLGDA+++FL + +L+ F L G ++ R+A+V N A A +L L + +
Sbjct: 830 THNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFM 889
Query: 206 L--HDSPRLYENVTRFA 220
L H S +E R A
Sbjct: 890 LYAHGSDLCHELELRHA 906
Score = 68 (29.0 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 107 LRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNAN 142
LR+ LE+ I Y F+++ L AL+HP+Y N
Sbjct: 737 LRFHKSLDLLEESIGYRFKNRYLLQLALTHPSYKEN 772
>TAIR|locus:2153333 [details] [associations]
symbol:RTL3 "RNAse THREE-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0006396 GO:GO:0003725 GO:GO:0090305
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 EMBL:AB012240 HSSP:O67082
IPI:IPI00541445 RefSeq:NP_199328.1 UniGene:At.55380
ProteinModelPortal:Q9FKF0 SMR:Q9FKF0 PaxDb:Q9FKF0 PRIDE:Q9FKF0
EnsemblPlants:AT5G45150.1 GeneID:834551 KEGG:ath:AT5G45150
TAIR:At5g45150 HOGENOM:HOG000152519 InParanoid:Q9FKF0 OMA:PHVEPED
PhylomeDB:Q9FKF0 ProtClustDB:CLSN2916859 Genevestigator:Q9FKF0
Uniprot:Q9FKF0
Length = 957
Score = 165 (63.1 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 37/106 (34%), Positives = 62/106 (58%)
Query: 116 LEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLS 175
+EK +NY+F +K+ L +A++ + + RLEF GD+I++ T Y+ + +L
Sbjct: 7 VEKILNYSFVNKTLLKEAITQKS-------PLFDRLEFFGDSILEVAFTNYICHTYPNLK 59
Query: 176 PGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQ 221
E+ D+R+A V+N FA AV +LH LL +P L++ V FA+
Sbjct: 60 VKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAE 105
>TIGR_CMR|DET_1025 [details] [associations]
symbol:DET_1025 "ribonuclease III" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
TIGRFAMs:TIGR02191 HOGENOM:HOG000246808 OMA:LTHKSCK
RefSeq:YP_181741.1 ProteinModelPortal:Q3Z7Q8 STRING:Q3Z7Q8
GeneID:3229696 KEGG:det:DET1025 PATRIC:21609095
ProtClustDB:CLSK837151 BioCyc:DETH243164:GJNF-1026-MONOMER
Uniprot:Q3Z7Q8
Length = 237
Score = 151 (58.2 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 32/97 (32%), Positives = 57/97 (58%)
Query: 112 ECTQLEKRINYTFQDKSFLLQALSHPTY---NANRITTSYQRLEFLGDAIIDFLVTAYLY 168
+ T+LEK + F++ S L QAL H ++ N N ++ S +R+EFLGDA++ + LY
Sbjct: 3 DLTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLY 62
Query: 169 ENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
+F + G+++ RS +V + A+ ++L K+L
Sbjct: 63 HDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYL 99
>TIGR_CMR|BA_3987 [details] [associations]
symbol:BA_3987 "ribonuclease III" species:198094 "Bacillus
anthracis str. Ames" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
RefSeq:NP_846229.1 RefSeq:YP_020627.1 RefSeq:YP_029951.1
ProteinModelPortal:Q81WI8 DNASU:1087539
EnsemblBacteria:EBBACT00000008054 EnsemblBacteria:EBBACT00000016917
EnsemblBacteria:EBBACT00000023512 GeneID:1087539 GeneID:2816770
GeneID:2849362 KEGG:ban:BA_3987 KEGG:bar:GBAA_3987 KEGG:bat:BAS3700
HOGENOM:HOG000246808 OMA:LTHKSCK
BioCyc:BANT260799:GJAJ-3758-MONOMER
BioCyc:BANT261594:GJ7F-3875-MONOMER Uniprot:Q81WI8
Length = 245
Score = 146 (56.5 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 30/86 (34%), Positives = 54/86 (62%)
Query: 117 EKRINYTFQDKSFLLQALSHPTY-NANRITT--SYQRLEFLGDAIIDFLVTAYLYENFSH 173
+++I TF D+ L+QA +H +Y N +R +RLEFLGDA+++ V+ YL++ +
Sbjct: 23 QEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPT 82
Query: 174 LSPGEISDIRSAMVNNVTFASYAVRL 199
+S GE++ +R+A+V + +A L
Sbjct: 83 MSEGELTKLRAAIVCEPSLVRFANEL 108
Score = 37 (18.1 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 272 PKALGDVFEALV 283
P L DVFEA +
Sbjct: 129 PALLADVFEAFI 140
>TIGR_CMR|CHY_1444 [details] [associations]
symbol:CHY_1444 "ribonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004525
"ribonuclease III activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_360276.1 ProteinModelPortal:Q3AC58
STRING:Q3AC58 GeneID:3727428 KEGG:chy:CHY_1444 PATRIC:21276019
BioCyc:CHYD246194:GJCN-1443-MONOMER Uniprot:Q3AC58
Length = 235
Score = 149 (57.5 bits), Expect = 8.9e-09, P = 8.9e-09
Identities = 31/93 (33%), Positives = 54/93 (58%)
Query: 116 LEKRINYTFQDKSFLLQALSHPTY---NANRITTSYQRLEFLGDAIIDFLVTAYLYENFS 172
LEK + + F + S LL A++HP+Y + +RLEFLGDA+++ ++ YL+ F
Sbjct: 9 LEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLFRTFP 68
Query: 173 HLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
S G+++ +RS +V + A +++L K L
Sbjct: 69 QKSEGDLTKLRSRLVCAESLYELAFKINLDKFL 101
>UNIPROTKB|F1PJL5 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 EMBL:AAEX03003196
Ensembl:ENSCAFT00000030086 OMA:TSICAFD Uniprot:F1PJL5
Length = 627
Score = 158 (60.7 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 51/166 (30%), Positives = 82/166 (49%)
Query: 46 VADVVESLTG-VYLRSCGIEGAMLFLQALNILPQSKIDVHEAL--YGPHPSAVRCPEQAR 102
+A+ E+L G VYL E LF + L P D+ E Y HP ++ P R
Sbjct: 293 MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDP----DLREVWLNYPLHPLQLQEPNTDR 348
Query: 103 GL-DPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIID 160
L + + + T+ E+ I F L +A + T N +T + QR+EFLGD+I+
Sbjct: 349 QLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQ 408
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
+ T YL+ +F G ++ +RS++VNN T A A L + ++ +
Sbjct: 409 LVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 454
Score = 125 (49.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 40/128 (31%), Positives = 63/128 (49%)
Query: 84 HEALYGPHPSAVRCPEQARGLDPLRY----IPECTQLEKRINYTFQDKSFLLQALSHPTY 139
H +G +P R G+ +Y + +K IN S L Q PT
Sbjct: 155 HHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQ--DDPT- 211
Query: 140 NANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRL 199
+RI + +RLEFLGDA+++FL + +LY F L G ++ R+A+V N A A +L
Sbjct: 212 -PSRINHN-ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKL 269
Query: 200 DLHKHLLH 207
+L + +L+
Sbjct: 270 ELDRFMLY 277
>ZFIN|ZDB-GENE-070209-23 [details] [associations]
symbol:rnasen "ribonuclease type III, nuclear"
species:7955 "Danio rerio" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 ZFIN:ZDB-GENE-070209-23
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 OMA:SGKEKNY
EMBL:BX571950 IPI:IPI00499713 Ensembl:ENSDART00000089017
ArrayExpress:F1QKS5 Bgee:F1QKS5 Uniprot:F1QKS5
Length = 1289
Score = 160 (61.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 53/163 (32%), Positives = 83/163 (50%)
Query: 46 VADVVESLTG-VYLRSCGIEGAM-LFLQAL-NILPQSKIDVHEALYGPHPSAVRCPEQAR 102
+A+ E+L G VYL G+E A LF + L N ++ ++ Y PHP V+ P R
Sbjct: 960 MANCFEALIGAVYLEG-GLEEAKDLFGRLLFNTEDMREVWLN---YPPHPLQVQEPLTDR 1015
Query: 103 GL-DPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIID 160
L + + + T E I F L +A + T N +T + QR+EFLGD+I+
Sbjct: 1016 QLIESSPVLQKLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQ 1075
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHK 203
+ T YL+ +F G ++ +RS++VNN T A A L + +
Sbjct: 1076 LVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 1118
Score = 126 (49.4 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 27/78 (34%), Positives = 47/78 (60%)
Query: 130 LLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNN 189
++ L + +RI + +RLEFLGDA+++FL + +LY F L G ++ R+A+V N
Sbjct: 868 IMSRLGQDDPSPSRINHN-ERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQN 926
Query: 190 VTFASYAVRLDLHKHLLH 207
A A +L+L + +L+
Sbjct: 927 QHLAMLAKKLELDRFMLY 944
Score = 38 (18.4 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 106 PLRYIPECTQLEKRINYT 123
PL IP C + I+YT
Sbjct: 532 PLTSIPLCRVIRFNIDYT 549
>UNIPROTKB|F1LQY5 [details] [associations]
symbol:F1LQY5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 IPI:IPI00870720
Ensembl:ENSRNOT00000018032 ArrayExpress:F1LQY5 Uniprot:F1LQY5
Length = 1018
Score = 158 (60.7 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 51/166 (30%), Positives = 82/166 (49%)
Query: 46 VADVVESLTG-VYLRSCGIEGAMLFLQALNILPQSKIDVHEAL--YGPHPSAVRCPEQAR 102
+A+ E+L G VYL E LF + L P D+ E Y HP ++ P R
Sbjct: 684 MANCFEALIGAVYLEGTLEEAKQLFGRLLFNDP----DLREVWLNYPLHPLQLQEPNTDR 739
Query: 103 GL-DPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIID 160
L + + + T+ E+ I F L +A + T N +T + QR+EFLGD+I+
Sbjct: 740 QLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQ 799
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
+ T YL+ +F G ++ +RS++VNN T A A L + ++ +
Sbjct: 800 LVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 845
Score = 125 (49.1 bits), Expect = 0.00011, P = 0.00011
Identities = 40/128 (31%), Positives = 63/128 (49%)
Query: 84 HEALYGPHPSAVRCPEQARGLDPLRY----IPECTQLEKRINYTFQDKSFLLQALSHPTY 139
H +G +P R G+ +Y + +K IN S L Q PT
Sbjct: 546 HHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQ--DDPT- 602
Query: 140 NANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRL 199
+RI + +RLEFLGDA+++FL + +LY F L G ++ R+A+V N A A +L
Sbjct: 603 -PSRINHN-ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKL 660
Query: 200 DLHKHLLH 207
+L + +L+
Sbjct: 661 ELDRFMLY 668
>MGI|MGI:1261425 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IDA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0010468 "regulation
of gene expression" evidence=IMP] [GO:0010586 "miRNA metabolic
process" evidence=IMP] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 MGI:MGI:1261425 GO:GO:0005730 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0042254 GO:GO:0003725 GO:GO:0010586
GO:GO:0031054 GO:GO:0004521 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 KO:K03685
HSSP:O67082 CTD:29102 HOGENOM:HOG000122291 OMA:SGKEKNY
OrthoDB:EOG4VQ9NG ChiTaRS:DROSHA EMBL:AK144147 EMBL:AK148640
EMBL:BC088999 IPI:IPI00336345 RefSeq:NP_001123621.1
RefSeq:NP_081075.3 UniGene:Mm.293142 ProteinModelPortal:Q5HZJ0
SMR:Q5HZJ0 STRING:Q5HZJ0 PhosphoSite:Q5HZJ0 PRIDE:Q5HZJ0
Ensembl:ENSMUST00000090292 Ensembl:ENSMUST00000169061 GeneID:14000
KEGG:mmu:14000 UCSC:uc007via.2 InParanoid:Q5HZJ0 NextBio:284892
Bgee:Q5HZJ0 Genevestigator:Q5HZJ0 Uniprot:Q5HZJ0
Length = 1373
Score = 158 (60.7 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 51/166 (30%), Positives = 82/166 (49%)
Query: 46 VADVVESLTG-VYLRSCGIEGAMLFLQALNILPQSKIDVHEAL--YGPHPSAVRCPEQAR 102
+A+ E+L G VYL E LF + L P D+ E Y HP ++ P R
Sbjct: 1039 MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDP----DLREVWLNYPLHPLQLQEPNTDR 1094
Query: 103 GL-DPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIID 160
L + + + T+ E+ I F L +A + T N +T + QR+EFLGD+I+
Sbjct: 1095 QLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQ 1154
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
+ T YL+ +F G ++ +RS++VNN T A A L + ++ +
Sbjct: 1155 LVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1200
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 40/128 (31%), Positives = 63/128 (49%)
Query: 84 HEALYGPHPSAVRCPEQARGLDPLRY----IPECTQLEKRINYTFQDKSFLLQALSHPTY 139
H +G +P R G+ +Y + +K IN S L Q PT
Sbjct: 901 HHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQ--DDPT- 957
Query: 140 NANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRL 199
+RI + +RLEFLGDA+++FL + +LY F L G ++ R+A+V N A A +L
Sbjct: 958 -PSRINHN-ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKL 1015
Query: 200 DLHKHLLH 207
+L + +L+
Sbjct: 1016 ELDRFMLY 1023
>UNIPROTKB|E9PTR3 [details] [associations]
symbol:E9PTR3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 CTD:29102 IPI:IPI00559397
RefSeq:NP_001101125.2 RefSeq:XP_003749268.1 UniGene:Rn.41113
Ensembl:ENSRNOT00000048026 GeneID:310159 KEGG:rno:310159
ArrayExpress:E9PTR3 Uniprot:E9PTR3
Length = 1373
Score = 158 (60.7 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 51/166 (30%), Positives = 82/166 (49%)
Query: 46 VADVVESLTG-VYLRSCGIEGAMLFLQALNILPQSKIDVHEAL--YGPHPSAVRCPEQAR 102
+A+ E+L G VYL E LF + L P D+ E Y HP ++ P R
Sbjct: 1039 MANCFEALIGAVYLEGTLEEAKQLFGRLLFNDP----DLREVWLNYPLHPLQLQEPNTDR 1094
Query: 103 GL-DPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIID 160
L + + + T+ E+ I F L +A + T N +T + QR+EFLGD+I+
Sbjct: 1095 QLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQ 1154
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
+ T YL+ +F G ++ +RS++VNN T A A L + ++ +
Sbjct: 1155 LVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1200
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 40/128 (31%), Positives = 63/128 (49%)
Query: 84 HEALYGPHPSAVRCPEQARGLDPLRY----IPECTQLEKRINYTFQDKSFLLQALSHPTY 139
H +G +P R G+ +Y + +K IN S L Q PT
Sbjct: 901 HHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQ--DDPT- 957
Query: 140 NANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRL 199
+RI + +RLEFLGDA+++FL + +LY F L G ++ R+A+V N A A +L
Sbjct: 958 -PSRINHN-ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKL 1015
Query: 200 DLHKHLLH 207
+L + +L+
Sbjct: 1016 ELDRFMLY 1023
>UNIPROTKB|Q9NRR4 [details] [associations]
symbol:DROSHA "Ribonuclease 3" species:9606 "Homo sapiens"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0010586 "miRNA metabolic process" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0010467 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0042254
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
BRENDA:3.1.26.3 PANTHER:PTHR11207 KO:K03685 EMBL:AF189011
EMBL:AC008768 EMBL:AC022417 EMBL:AC106802 EMBL:AJ242976
EMBL:AK001121 EMBL:BC041162 EMBL:BC054003 EMBL:AF116910
IPI:IPI00219990 IPI:IPI00300956 IPI:IPI00942044 RefSeq:NP_037367.3
UniGene:Hs.97997 PDB:2KHX PDBsum:2KHX ProteinModelPortal:Q9NRR4
SMR:Q9NRR4 DIP:DIP-33300N IntAct:Q9NRR4 MINT:MINT-1184869
STRING:Q9NRR4 PhosphoSite:Q9NRR4 DMDM:20139357 PaxDb:Q9NRR4
PRIDE:Q9NRR4 Ensembl:ENST00000344624 Ensembl:ENST00000511367
GeneID:29102 KEGG:hsa:29102 UCSC:uc003jhg.2 CTD:29102
GeneCards:GC05M031401 H-InvDB:HIX0004780 HGNC:HGNC:17904 MIM:608828
neXtProt:NX_Q9NRR4 PharmGKB:PA142671060 HOGENOM:HOG000122291
HOVERGEN:HBG023130 InParanoid:Q9NRR4 OMA:SGKEKNY OrthoDB:EOG4VQ9NG
ChiTaRS:DROSHA EvolutionaryTrace:Q9NRR4 GenomeRNAi:29102
NextBio:52141 ArrayExpress:Q9NRR4 Bgee:Q9NRR4 CleanEx:HS_RNASEN
Genevestigator:Q9NRR4 GermOnline:ENSG00000113360 Uniprot:Q9NRR4
Length = 1374
Score = 158 (60.7 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 51/166 (30%), Positives = 82/166 (49%)
Query: 46 VADVVESLTG-VYLRSCGIEGAMLFLQALNILPQSKIDVHEAL--YGPHPSAVRCPEQAR 102
+A+ E+L G VYL E LF + L P D+ E Y HP ++ P R
Sbjct: 1040 MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDP----DLREVWLNYPLHPLQLQEPNTDR 1095
Query: 103 GL-DPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIID 160
L + + + T+ E+ I F L +A + T N +T + QR+EFLGD+I+
Sbjct: 1096 QLIETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQ 1155
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
+ T YL+ +F G ++ +RS++VNN T A A L + ++ +
Sbjct: 1156 LVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1201
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 40/128 (31%), Positives = 63/128 (49%)
Query: 84 HEALYGPHPSAVRCPEQARGLDPLRY----IPECTQLEKRINYTFQDKSFLLQALSHPTY 139
H +G +P R G+ +Y + +K IN S L Q PT
Sbjct: 902 HHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQ--DDPT- 958
Query: 140 NANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRL 199
+RI + +RLEFLGDA+++FL + +LY F L G ++ R+A+V N A A +L
Sbjct: 959 -PSRINHN-ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKL 1016
Query: 200 DLHKHLLH 207
+L + +L+
Sbjct: 1017 ELDRFMLY 1024
>UNIPROTKB|H0YJZ6 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000999 Pfam:PF00636
PROSITE:PS50142 SMART:SM00535 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 HGNC:HGNC:17098 ChiTaRS:DICER1
Ensembl:ENST00000532939 Uniprot:H0YJZ6
Length = 394
Score = 104 (41.7 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 32/84 (38%), Positives = 47/84 (55%)
Query: 8 DFDL-YQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGA 66
DF + + +P+E+ V + ++ S SY+ + DK +AD VE+L G YL SCG A
Sbjct: 201 DFVVGFWNPSEENCGVDTGKQ--SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAA 258
Query: 67 MLFLQALN--ILPQSK-IDVHEAL 87
LFL +L +LP K D +AL
Sbjct: 259 QLFLCSLGLKVLPVIKRTDREKAL 282
Score = 91 (37.1 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 16/29 (55%), Positives = 24/29 (82%)
Query: 117 EKRINYTFQDKSFLLQALSHPTYNANRIT 145
EK+INY F++K++LLQA +H +Y+ N IT
Sbjct: 349 EKKINYRFKNKAYLLQAFTHASYHYNTIT 377
>UNIPROTKB|F1SP38 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:CU633306
EMBL:FP325179 EMBL:FP326694 Ensembl:ENSSSCT00000018300
ArrayExpress:F1SP38 Uniprot:F1SP38
Length = 1328
Score = 156 (60.0 bits), Expect = 4.7e-08, P = 4.7e-08
Identities = 51/166 (30%), Positives = 81/166 (48%)
Query: 46 VADVVESLTG-VYLRSCGIEGAMLFLQALNILPQSKIDVHEAL--YGPHPSAVRCPEQAR 102
+A+ E+L G VYL E LF + L P D+ E Y HP ++ P R
Sbjct: 994 MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDP----DLREVWLNYPLHPLQLQEPNTDR 1049
Query: 103 GL-DPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIID 160
L + + + T+ E I F L +A + T N +T + QR+EFLGD+I+
Sbjct: 1050 QLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQ 1109
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
+ T YL+ +F G ++ +RS++VNN T A A L + ++ +
Sbjct: 1110 LVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1155
Score = 125 (49.1 bits), Expect = 0.00016, P = 0.00016
Identities = 40/128 (31%), Positives = 63/128 (49%)
Query: 84 HEALYGPHPSAVRCPEQARGLDPLRY----IPECTQLEKRINYTFQDKSFLLQALSHPTY 139
H +G +P R G+ +Y + +K IN S L Q PT
Sbjct: 856 HHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGINTLINIMSRLGQ--DDPT- 912
Query: 140 NANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRL 199
+RI + +RLEFLGDA+++FL + +LY F L G ++ R+A+V N A A +L
Sbjct: 913 -PSRINHN-ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKL 970
Query: 200 DLHKHLLH 207
+L + +L+
Sbjct: 971 ELDRFMLY 978
>UNIPROTKB|E1BGY0 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:DAAA02050706
IPI:IPI00718255 Ensembl:ENSBTAT00000023346 Uniprot:E1BGY0
Length = 1368
Score = 156 (60.0 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 51/166 (30%), Positives = 81/166 (48%)
Query: 46 VADVVESLTG-VYLRSCGIEGAMLFLQALNILPQSKIDVHEAL--YGPHPSAVRCPEQAR 102
+A+ E+L G VYL E LF + L P D+ E Y HP ++ P R
Sbjct: 1034 MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDP----DLREVWLNYPLHPLQLQEPNTDR 1089
Query: 103 GL-DPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIID 160
L + + + T+ E I F L +A + T N +T + QR+EFLGD+I+
Sbjct: 1090 QLIETSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQ 1149
Query: 161 FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
+ T YL+ +F G ++ +RS++VNN T A A L + ++ +
Sbjct: 1150 LVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1195
>UNIPROTKB|Q9KPB2 [details] [associations]
symbol:rnc "Ribonuclease 3" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 141 (54.7 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 111 PECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYEN 170
P +L ++ YTF++ L AL+H + N +RLEFLGD+I+ F++ LY
Sbjct: 3 PPMNKLTSKLGYTFKETELLNLALTHRSANGKH----NERLEFLGDSILSFVIADELYRR 58
Query: 171 FSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
F ++ G++S +R+ +V T A DL +L
Sbjct: 59 FPKVNEGDMSRMRATLVRGNTLAELGREFDLGDYL 93
>TIGR_CMR|VC_2461 [details] [associations]
symbol:VC_2461 "ribonuclease III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 141 (54.7 bits), Expect = 7.1e-08, P = 7.1e-08
Identities = 31/95 (32%), Positives = 51/95 (53%)
Query: 111 PECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYEN 170
P +L ++ YTF++ L AL+H + N +RLEFLGD+I+ F++ LY
Sbjct: 3 PPMNKLTSKLGYTFKETELLNLALTHRSANGKH----NERLEFLGDSILSFVIADELYRR 58
Query: 171 FSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
F ++ G++S +R+ +V T A DL +L
Sbjct: 59 FPKVNEGDMSRMRATLVRGNTLAELGREFDLGDYL 93
>TIGR_CMR|NSE_0918 [details] [associations]
symbol:NSE_0918 "ribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004525 "ribonuclease
III activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_506782.1
ProteinModelPortal:Q2GCL4 STRING:Q2GCL4 GeneID:3931585
KEGG:nse:NSE_0918 PATRIC:22681823 ProtClustDB:CLSK2528151
BioCyc:NSEN222891:GHFU-920-MONOMER Uniprot:Q2GCL4
Length = 222
Score = 139 (54.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 30/94 (31%), Positives = 56/94 (59%)
Query: 112 ECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENF 171
E +L+ + F++K L++AL+HP+ SY+RLEFLGDA+++ ++ + LY+ F
Sbjct: 2 ELEELQSLLGVYFKNKDLLVEALTHPSVEK---CPSYERLEFLGDAVLNLVIASMLYDLF 58
Query: 172 SHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
G +S +SA++ T A A +++L ++
Sbjct: 59 PGDPEGRLSHRQSALICKNTLAMLARQMNLGDYI 92
>UNIPROTKB|P0A7Y0 [details] [associations]
symbol:rnc "RNase III" species:83333 "Escherichia coli
K-12" [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA;IDA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0006396 EMBL:D64044 EMBL:U36841
GO:GO:0003725 GO:GO:0008033 GO:GO:0016075 GO:GO:0019843
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207 EMBL:M14658
EMBL:X02673 KO:K03685 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK EMBL:X02946 EMBL:M26415 PIR:F65034
RefSeq:NP_417062.1 RefSeq:YP_490795.1 ProteinModelPortal:P0A7Y0
SMR:P0A7Y0 DIP:DIP-48223N IntAct:P0A7Y0 MINT:MINT-1227120
PhosSite:P010446 PaxDb:P0A7Y0 PRIDE:P0A7Y0
EnsemblBacteria:EBESCT00000001804 EnsemblBacteria:EBESCT00000001805
EnsemblBacteria:EBESCT00000015272 GeneID:12931603 GeneID:947033
KEGG:ecj:Y75_p2520 KEGG:eco:b2567 PATRIC:32120533 EchoBASE:EB0850
EcoGene:EG10857 BioCyc:EcoCyc:EG10857-MONOMER
BioCyc:ECOL316407:JW2551-MONOMER BioCyc:MetaCyc:EG10857-MONOMER
Genevestigator:P0A7Y0 Uniprot:P0A7Y0
Length = 226
Score = 137 (53.3 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 28/87 (32%), Positives = 51/87 (58%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
+L++++ YTF + L QAL+H + ++ +RLEFLGD+I+ +++ LY F +
Sbjct: 8 RLQRKLGYTFNHQELLQQALTHRSASSKH----NERLEFLGDSILSYVIANALYHRFPRV 63
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDL 201
G++S +R+ +V T A A +L
Sbjct: 64 DEGDMSRMRATLVRGNTLAELAREFEL 90
>TIGR_CMR|CPS_4122 [details] [associations]
symbol:CPS_4122 "ribonuclease III" species:167879
"Colwellia psychrerythraea 34H" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:YP_270777.1 ProteinModelPortal:Q47WP5 STRING:Q47WP5
GeneID:3521712 KEGG:cps:CPS_4122 PATRIC:21471107
BioCyc:CPSY167879:GI48-4135-MONOMER Uniprot:Q47WP5
Length = 266
Score = 138 (53.6 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 31/92 (33%), Positives = 53/92 (57%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
+L K++ Y F + L+QAL+H + +RLEFLGD+I+ F++ LY+ F
Sbjct: 10 RLTKKLGYEFNEPLLLVQALTHRSAKG----AHNERLEFLGDSILGFVIAEALYDKFPKH 65
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
G+++ +RS++V VT A A +L + L+
Sbjct: 66 DEGDLTRMRSSLVKGVTLAEVARDFNLGECLI 97
>UNIPROTKB|F1NQC9 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0010586
"miRNA metabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:AADN02007047
IPI:IPI00583351 Ensembl:ENSGALT00000021065 Uniprot:F1NQC9
Length = 1336
Score = 144 (55.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 49/161 (30%), Positives = 78/161 (48%)
Query: 46 VADVVESLTG-VYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARGL 104
+A+ E+L G VYL E LF + L + DV Y HP ++ R L
Sbjct: 1002 MANCFEALIGAVYLEGSLEEAKQLFGRLL-FNDKDLRDVW-LNYPLHPLQLQESNTDRQL 1059
Query: 105 -DPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIIDFL 162
+ + + T+ E+ I F L +A + T N +T + QR+EFLGD+I+ +
Sbjct: 1060 IETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1119
Query: 163 VTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHK 203
T YL+ +F G ++ +RS++VNN T A A L + +
Sbjct: 1120 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 1160
Score = 121 (47.7 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 24/59 (40%), Positives = 39/59 (66%)
Query: 149 QRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLH 207
+RLEFLGDA+++FL + +LY F L G ++ R+A+V N A A +L+L + +L+
Sbjct: 928 ERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLY 986
Score = 74 (31.1 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 107 LRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNAN 142
+RY L+K I YTF+D+ L A++HP+++ N
Sbjct: 832 IRYHQCLMHLDKLIGYTFRDRCLLQLAMTHPSHHLN 867
>TIGR_CMR|APH_1149 [details] [associations]
symbol:APH_1149 "ribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:YP_505691.1 HSSP:Q9X0I6 ProteinModelPortal:Q2GIW0
STRING:Q2GIW0 GeneID:3930479 KEGG:aph:APH_1149 PATRIC:20951072
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
BioCyc:APHA212042:GHPM-1155-MONOMER TIGRFAMs:TIGR02191
Uniprot:Q2GIW0
Length = 236
Score = 135 (52.6 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 34/85 (40%), Positives = 46/85 (54%)
Query: 122 YTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISD 181
Y FQD L A++HP+ A R SY+RLEFLGDA++ +V+ LY F S G ++
Sbjct: 22 YRFQDHELLKTAVTHPSIAAERYA-SYERLEFLGDAVLGLVVSEMLYTLFPDDSEGLLTK 80
Query: 182 IRSAMVNNVTFASYAVRLDLHKHLL 206
R A+V A L+L LL
Sbjct: 81 KRIALVRGSKVVEIAQSLNLGNILL 105
>UNIPROTKB|F1M2R2 [details] [associations]
symbol:F1M2R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
IPI:IPI00951546 Ensembl:ENSRNOT00000066555 ArrayExpress:F1M2R2
Uniprot:F1M2R2
Length = 287
Score = 136 (52.9 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 110 IPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIIDFLVTAYLY 168
+ + T+ E+ I F L +A + T N +T + QR+EFLGD+I+ + T YL+
Sbjct: 17 LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 76
Query: 169 ENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
+F G ++ +RS++VNN T A A L + ++ +
Sbjct: 77 IHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 114
>RGD|1307626 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010586 "miRNA metabolic process" evidence=ISO]
[GO:0031054 "pre-miRNA processing" evidence=ISO] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1307626 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207
HOGENOM:HOG000122291 HOVERGEN:HBG023130 OrthoDB:EOG4VQ9NG
UniGene:Rn.41113 IPI:IPI00870720 EMBL:AY373464
ProteinModelPortal:Q67B98 STRING:Q67B98 PRIDE:Q67B98
InParanoid:Q67B98 ArrayExpress:Q67B98 Genevestigator:Q67B98
Uniprot:Q67B98
Length = 288
Score = 136 (52.9 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 110 IPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIIDFLVTAYLY 168
+ + T+ E+ I F L +A + T N +T + QR+EFLGD+I+ + T YL+
Sbjct: 18 LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 77
Query: 169 ENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
+F G ++ +RS++VNN T A A L + ++ +
Sbjct: 78 IHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 115
>TIGR_CMR|GSU_2228 [details] [associations]
symbol:GSU_2228 "ribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:NP_953277.1 ProteinModelPortal:Q74AX1 GeneID:2687587
KEGG:gsu:GSU2228 PATRIC:22027311 ProtClustDB:CLSK828768
BioCyc:GSUL243231:GH27-2184-MONOMER Uniprot:Q74AX1
Length = 248
Score = 134 (52.2 bits), Expect = 8.8e-07, P = 8.8e-07
Identities = 33/93 (35%), Positives = 51/93 (54%)
Query: 116 LEKRINYTFQDKSFLLQALSHPTY-NANRITT--SYQRLEFLGDAIIDFLVTAYLYENFS 172
LE I Y F D+ FL +AL+H ++ N R T +RLEF GDAI+ F + L ++
Sbjct: 19 LETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPDNERLEFFGDAILGFCIGKMLLRHYP 78
Query: 173 HLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
G ++ ++SA+V T A A ++L +L
Sbjct: 79 ESREGALARMKSALVGEETLADLAAAVELGSYL 111
>ASPGD|ASPL0000015309 [details] [associations]
symbol:AN11224 species:162425 "Emericella nidulans"
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0032296
"double-stranded RNA-specific ribonuclease activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0034473 "U1 snRNA 3'-end processing" evidence=IEA] [GO:0031137
"regulation of conjugation with cellular fusion" evidence=IEA]
[GO:0034476 "U5 snRNA 3'-end processing" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0060237 "regulation of
fungal-type cell wall organization" evidence=IEA] [GO:0006325
"chromatin organization" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=IEA]
[GO:0030847 "termination of RNA polymerase II transcription,
exosome-dependent" evidence=IEA] [GO:0034475 "U4 snRNA 3'-end
processing" evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0006396 EMBL:BN001302 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 EnsemblFungi:CADANIAT00004360
HOGENOM:HOG000216942 OMA:TKGDIFE Uniprot:C8V3S2
Length = 355
Score = 133 (51.9 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 28/69 (40%), Positives = 38/69 (55%)
Query: 135 SHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFAS 194
+HP A T+Y RLE LGDA I+ + T ++ F H+ G IS IR +V N T A
Sbjct: 133 THPGV-AKDSRTTYDRLEILGDAYIELISTKLIWNKFQHIPSGRISQIRELLVKNETLAE 191
Query: 195 YAVRLDLHK 203
YA + + K
Sbjct: 192 YATQYGIDK 200
Score = 41 (19.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 252 IEEK-DVQTDVYGRVVEYVDVPKALGDVFEALV 283
I++K V ++Y + ++ K GD+FEA V
Sbjct: 198 IDKKASVPAELYNQPKRWI---KTKGDIFEAYV 227
>DICTYBASE|DDB_G0268410 [details] [associations]
symbol:drnB "putative RNase III" species:44689
"Dictyostelium discoideum" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 dictyBase:DDB_G0268410 GenomeReviews:CM000150_GR
Gene3D:3.30.160.20 EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:XP_647462.2 ProteinModelPortal:Q55FS1
EnsemblProtists:DDB0231869 GeneID:8616269 KEGG:ddi:DDB_G0268410
OMA:NEYENEY ProtClustDB:CLSZ2431100 Uniprot:Q55FS1
Length = 1385
Score = 142 (55.0 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 30/74 (40%), Positives = 47/74 (63%)
Query: 128 SFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMV 187
S L +AL P Y+ + + SYQRLE++GDA++DF V+ +LY F G+++D RS +V
Sbjct: 1230 SLLEEALCFP-YSFHSASKSYQRLEYVGDAVLDFFVSDFLYATFPLAQEGQLTDYRSRLV 1288
Query: 188 NNVTFASYAVRLDL 201
N +S + +L L
Sbjct: 1289 RNSNLSSISRKLCL 1302
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 142 (55.0 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 53/161 (32%), Positives = 83/161 (51%)
Query: 40 KLGDKVVADVVESLTGVYLRSCGIEGAML-FLQALNIL-PQSK---IDVHEA-LYGPHPS 93
K+ K +ADV E+L G + IEG M L+ ++++ P + +D A LY +
Sbjct: 1105 KMSSKTLADVTEALIG----AAYIEGGMSKALRCISLMIPNERWRSLDESRAVLYQVALN 1160
Query: 94 AVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNA-NRITTSYQRLE 152
+ P L PL E+ + Y+F KS L++A++H +YN +S +RLE
Sbjct: 1161 DIPLPST---LGPL---------EELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLE 1208
Query: 153 FLGDAIIDFLVTAYLYENFSHLSPGEISD-----IRSAMVN 188
FLGD+++DF+V A L FS P I +R+A+VN
Sbjct: 1209 FLGDSVLDFVVVARL---FSVKDPAPIEHYNMHLLRTAVVN 1246
>TIGR_CMR|ECH_1054 [details] [associations]
symbol:ECH_1054 "ribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003725 "double-stranded
RNA binding" evidence=ISS] [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HSSP:Q9X0I6 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_507839.1
ProteinModelPortal:Q2GFE4 STRING:Q2GFE4 GeneID:3927257
KEGG:ech:ECH_1054 PATRIC:20577460
BioCyc:ECHA205920:GJNR-1057-MONOMER Uniprot:Q2GFE4
Length = 226
Score = 128 (50.1 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 29/112 (25%), Positives = 60/112 (53%)
Query: 116 LEKRINYTFQDKSFLLQALSHPTY-NANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
+ K I Y F++ L +AL+HP+ + + + +Y+RLEFLGDA+++ +++ L+ F
Sbjct: 5 ISKIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIFPKD 64
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLL-HDSPRLYENVTRFAQNQEA 225
+ G ++ ++A+V A ++L + ++ D R + F + A
Sbjct: 65 TEGNLAKKKTALVCGNKLVEVAQSINLGQFIMMSDGERACGGINNFRNLENA 116
>TIGR_CMR|CBU_1503 [details] [associations]
symbol:CBU_1503 "ribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 EMBL:L27436
KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 PIR:S60767 RefSeq:NP_820486.1
ProteinModelPortal:P51837 GeneID:1209413 KEGG:cbu:CBU_1503
PATRIC:17931771 BioCyc:CBUR227377:GJ7S-1488-MONOMER Uniprot:P51837
Length = 233
Score = 127 (49.8 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 27/91 (29%), Positives = 55/91 (60%)
Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
+L +R+ + F + L AL+H + A+ + +RLEFLGD+++ F++ + LY+
Sbjct: 6 KLMERLGHQFNNLELLKIALTHCSSGAD----NNERLEFLGDSVLGFIIASELYQRRPQA 61
Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
G++S +R++MVN A + +L ++++L
Sbjct: 62 REGDLSRMRASMVNGDELAQMSTKLGINEYL 92
>TIGR_CMR|SO_1348 [details] [associations]
symbol:SO_1348 "ribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 RefSeq:NP_716968.1 ProteinModelPortal:Q8EH81
GeneID:1169169 KEGG:son:SO_1348 PATRIC:23522350 Uniprot:Q8EH81
Length = 226
Score = 125 (49.1 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 31/102 (30%), Positives = 57/102 (55%)
Query: 104 LDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLV 163
++P++ +P +L + + Y F++ L QAL+H + AN+ +RLEFLGD+I+ ++
Sbjct: 1 MEPIKNLP---RLCRTLGYEFKNLDLLTQALTHRSA-ANKHN---ERLEFLGDSILSIVI 53
Query: 164 TAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHL 205
+ LY F + G++S +R+ +V T A L +L
Sbjct: 54 SDALYHQFPKATEGDLSRMRATLVRGDTLTLIAQAFKLGDYL 95
>DICTYBASE|DDB_G0274077 [details] [associations]
symbol:drnA-2 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 137 (53.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 46/166 (27%), Positives = 80/166 (48%)
Query: 33 YNFLDRIK-LGD--KVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYG 89
++++ RI +GD K AD++E+ G CG + + ++ I S +YG
Sbjct: 978 FDYILRITTIGDHSKPHADLIEAFIGAIYIECGFKDSFDWIIKW-IFDNSYYGSDNKIYG 1036
Query: 90 PHP--SAVRCPEQARGL-DPLRYIPECTQLEKRINYT-FQDKSFLLQALSH--PTYNANR 143
S + ++ + D L Q+ + +N T F D++ L + H N N
Sbjct: 1037 GGGGGSEINNNDELPIIEDNLINYKYYDQINQYLNSTDFNDQTNELVSNDHFYSNQNNNN 1096
Query: 144 ITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNN 189
T +RLEFLGDA++DF+V YL+ + G +++ +S +VNN
Sbjct: 1097 NTNFSERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNN 1142
Score = 37 (18.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 4 LSNLDFDLYQDPTEDGKKVSSPEKLPSSSYNFLDRI 39
++NL FD Q PT+ K EKL + +F ++
Sbjct: 626 ITNL-FDDQQQPTKIQLKKIEFEKLITIHNSFFSKL 660
>DICTYBASE|DDB_G0273051 [details] [associations]
symbol:drnA-1 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 137 (53.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 46/166 (27%), Positives = 80/166 (48%)
Query: 33 YNFLDRIK-LGD--KVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYG 89
++++ RI +GD K AD++E+ G CG + + ++ I S +YG
Sbjct: 978 FDYILRITTIGDHSKPHADLIEAFIGAIYIECGFKDSFDWIIKW-IFDNSYYGSDNKIYG 1036
Query: 90 PHP--SAVRCPEQARGL-DPLRYIPECTQLEKRINYT-FQDKSFLLQALSH--PTYNANR 143
S + ++ + D L Q+ + +N T F D++ L + H N N
Sbjct: 1037 GGGGGSEINNNDELPIIEDNLINYKYYDQINQYLNSTDFNDQTNELVSNDHFYSNQNNNN 1096
Query: 144 ITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNN 189
T +RLEFLGDA++DF+V YL+ + G +++ +S +VNN
Sbjct: 1097 NTNFSERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNN 1142
Score = 37 (18.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 4 LSNLDFDLYQDPTEDGKKVSSPEKLPSSSYNFLDRI 39
++NL FD Q PT+ K EKL + +F ++
Sbjct: 626 ITNL-FDDQQQPTKIQLKKIEFEKLITIHNSFFSKL 660
>UNIPROTKB|Q61XX9 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6238 "Caenorhabditis
briggsae" [GO:0004525 "ribonuclease III activity" evidence=ISS]
[GO:0019953 "sexual reproduction" evidence=ISS] [GO:0031053
"primary miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0030154
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0003725
GO:GO:0016075 GO:GO:0019953 GO:GO:0006364 EMBL:HE600906
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 KO:K03685 RefSeq:XP_002639240.1
HSSP:O67082 ProteinModelPortal:Q61XX9 EnsemblMetazoa:CBG03798
GeneID:8581234 KEGG:cbr:CBG03798 CTD:8581234 WormBase:CBG03798
HOGENOM:HOG000154167 OMA:FNIMGGE Uniprot:Q61XX9
Length = 1061
Score = 127 (49.8 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 48/153 (31%), Positives = 78/153 (50%)
Query: 46 VADVVESL-TGVYLRSCGIEGA-MLFLQAL-NILPQSKIDVHEALYGPHPSAVRCPEQAR 102
+A+ E+L GV+L S GI +F +A+ P+ K V + L H + P R
Sbjct: 743 LANAFEALMAGVFLDS-GIAPCDAIFSKAMYGKDPEMK-KVWDHL-NEHELKIEDPLGDR 799
Query: 103 GLDPLRYIPECT---QLEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAI 158
L R P T +LE+ I F + L +A + N +T + QRLE+LGD++
Sbjct: 800 DLS--RITPALTDFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSV 857
Query: 159 IDFLVTAYLYENFSHLSPGEISDIRSAMVNNVT 191
+ +++ YLY NF G +S +R+++V+N T
Sbjct: 858 LQLIISDYLYRNFPLHHEGHMSLLRTSLVSNQT 890
>TIGR_CMR|SPO_3198 [details] [associations]
symbol:SPO_3198 "ribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR
TIGRFAMs:TIGR02191 RefSeq:YP_168401.1 ProteinModelPortal:Q5LNK5
GeneID:3195258 KEGG:sil:SPO3198 PATRIC:23379843
ProtClustDB:CLSK934087 Uniprot:Q5LNK5
Length = 225
Score = 110 (43.8 bits), Expect = 0.00046, P = 0.00046
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 112 ECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENF 171
E E R+ Y+F+ L++AL+H + +++ + QRLEFLGD ++ ++ L E
Sbjct: 6 EMKAFEARLGYSFERPELLVRALTHGSISSSTRQDN-QRLEFLGDRVLGLVMATALLEAD 64
Query: 172 SHLSPGEISDIRSAMVNNVTFASYAVRLDL 201
+ G+++ +A+V T A A DL
Sbjct: 65 KDATEGQLAPRFNALVRKETCAEVAREADL 94
>WB|WBGene00009163 [details] [associations]
symbol:drsh-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0009792
GO:GO:0030154 GO:GO:0007052 GO:GO:0046872 Gene3D:3.30.160.20
GO:GO:0007506 GO:GO:0000910 GO:GO:0003725 GO:GO:0016075
GO:GO:0019953 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 EMBL:Z81070 HOGENOM:HOG000154167
EMBL:AF160248 PIR:T21420 RefSeq:NP_001122460.2 RefSeq:NP_492599.1
ProteinModelPortal:O01326 SMR:O01326 STRING:O01326 PaxDb:O01326
EnsemblMetazoa:F26E4.10a GeneID:172830 KEGG:cel:CELE_F26E4.10
UCSC:F26E4.10a CTD:172830 WormBase:F26E4.10a WormBase:F26E4.10b
InParanoid:O01326 OMA:RFHKSLD NextBio:877175 Uniprot:O01326
Length = 1086
Score = 119 (46.9 bits), Expect = 0.00058, P = 0.00058
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 116 LEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIIDFLVTAYLYENFSHL 174
LE+R+ F + L +A + N +T + QRLE+LGD+++ +V+ +LY F +
Sbjct: 836 LEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRFPYH 895
Query: 175 SPGEISDIRSAMVNNVTFA 193
G +S +R+++V+N T A
Sbjct: 896 HEGHMSLLRTSLVSNQTQA 914
>UNIPROTKB|O01326 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6239 "Caenorhabditis
elegans" [GO:0005634 "nucleus" evidence=IC] [GO:0031053 "primary
miRNA processing" evidence=IMP] [GO:0019953 "sexual reproduction"
evidence=IMP] [GO:0004525 "ribonuclease III activity" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0009792 GO:GO:0030154 GO:GO:0007052
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0000910
GO:GO:0003725 GO:GO:0016075 GO:GO:0019953 GO:GO:0006364
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 GeneTree:ENSGT00690000102147
EMBL:Z81070 HOGENOM:HOG000154167 EMBL:AF160248 PIR:T21420
RefSeq:NP_001122460.2 RefSeq:NP_492599.1 ProteinModelPortal:O01326
SMR:O01326 STRING:O01326 PaxDb:O01326 EnsemblMetazoa:F26E4.10a
GeneID:172830 KEGG:cel:CELE_F26E4.10 UCSC:F26E4.10a CTD:172830
WormBase:F26E4.10a WormBase:F26E4.10b InParanoid:O01326 OMA:RFHKSLD
NextBio:877175 Uniprot:O01326
Length = 1086
Score = 119 (46.9 bits), Expect = 0.00058, P = 0.00058
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 116 LEKRINYTFQDKSFLLQALSHPTYNANRITTSY-QRLEFLGDAIIDFLVTAYLYENFSHL 174
LE+R+ F + L +A + N +T + QRLE+LGD+++ +V+ +LY F +
Sbjct: 836 LEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRFPYH 895
Query: 175 SPGEISDIRSAMVNNVTFA 193
G +S +R+++V+N T A
Sbjct: 896 HEGHMSLLRTSLVSNQTQA 914
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.138 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 286 277 0.00080 115 3 11 22 0.48 33
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 62
No. of states in DFA: 578 (61 KB)
Total size of DFA: 182 KB (2106 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 24.06u 0.09s 24.15t Elapsed: 00:00:08
Total cpu time: 24.08u 0.09s 24.17t Elapsed: 00:00:13
Start: Thu Aug 15 12:46:07 2013 End: Thu Aug 15 12:46:20 2013