RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3979
         (286 letters)



>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain
           {Aquifex aeolicus [TaxId: 63363]}
          Length = 148

 Score = 73.0 bits (178), Expect = 1e-16
 Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
           QLEK++ YTF+DKS L +AL+H +Y+       Y+ LEFLGDA+++F +   L +   + 
Sbjct: 4   QLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSPNK 60

Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENV 216
             G +S +++ +++   F   A +L+LHK +     ++ E +
Sbjct: 61  REGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI 102


>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic
           domain {Thermotoga maritima [TaxId: 2336]}
          Length = 169

 Score = 67.2 bits (163), Expect = 3e-14
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 6/102 (5%)

Query: 115 QLEKRINYTFQDKSFLLQALSHPTYN------ANRITTSYQRLEFLGDAIIDFLVTAYLY 168
           + +K     F+++  L +AL H +Y         +   S ++LEFLGDA+++  V   LY
Sbjct: 13  EFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILY 72

Query: 169 ENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSP 210
           + +     G+++ ++SA  +    A  + +++L K L     
Sbjct: 73  KKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKG 114


>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus
           [TaxId: 1396]}
          Length = 127

 Score = 56.5 bits (136), Expect = 8e-11
 Identities = 11/86 (12%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 147 SYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLL 206
           +   L ++GDA+ +  +  +L +    + P ++  + ++ V+    A     L     L 
Sbjct: 7   NSLALAYMGDAVYEQYIRYHLLQKG-KVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 65

Query: 207 HDSPRLYENVTRFAQNQEARNHEISD 232
            +   +             +N ++  
Sbjct: 66  EEEEAVLRRGRNANSGTVPKNTDVQT 91


>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 344

 Score = 27.5 bits (59), Expect = 2.2
 Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 10/106 (9%)

Query: 136 HPTYNANRITTS--YQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFA 193
               N   ++       ++         L T  L  N   +    +  +++ +   +   
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN--EIELDAVRTLKTVIDEKMPDL 304

Query: 194 SYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDEEEEEEE 239
            +   L+L+ +   +     + V    +    R     DE ++ EE
Sbjct: 305 LF---LELNGNRFSEED---DVVDEIREVFSTRGRGELDELDDMEE 344


>d1w96a1 b.84.2.1 (A:451-566) Acetyl-CoA carboxylase, BC-C subdomain
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 116

 Score = 25.1 bits (54), Expect = 6.9
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 128 SFLLQALSHPTYNANRITTSY 148
            +L++ L    +  N ITT +
Sbjct: 91  EYLIKLLETEDFEDNTITTGW 111


>d1rzhh1 b.41.1.1 (H:36-248) Photosynthetic reaction centre
           {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 213

 Score = 25.1 bits (55), Expect = 9.0
 Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRL 212
            P   +     M + V  AS+  R DL +   H   ++
Sbjct: 61  FPHAPTG--DPMKDGVGPASWVARRDLPELDGHGHNKI 96


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.391 

Gapped
Lambda     K      H
   0.267   0.0571    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,087,685
Number of extensions: 51634
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 129
Number of HSP's successfully gapped: 14
Length of query: 286
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,254,276
Effective search space: 253363752
Effective search space used: 253363752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.2 bits)