Query psy398
Match_columns 162
No_of_seqs 107 out of 260
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 22:12:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy398.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/398hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_R RPN7, 26S proteasome re 100.0 2.6E-37 9.1E-42 270.2 1.4 155 1-161 59-237 (429)
2 3txn_A 26S proteasome regulato 99.3 1E-11 3.5E-16 108.5 10.7 102 55-160 103-209 (394)
3 4b4t_P 26S proteasome regulato 98.4 2.3E-06 7.9E-11 74.9 12.1 104 53-160 139-246 (445)
4 3ro3_A PINS homolog, G-protein 98.1 5.5E-05 1.9E-09 52.1 11.0 108 48-159 6-116 (164)
5 4gcn_A Protein STI-1; structur 98.0 0.00021 7.3E-09 50.5 12.8 105 48-159 5-110 (127)
6 3ro3_A PINS homolog, G-protein 97.9 0.00042 1.4E-08 47.5 13.3 109 47-159 45-156 (164)
7 4b4t_Q 26S proteasome regulato 97.9 0.00019 6.6E-09 58.7 12.0 108 50-160 134-244 (434)
8 1elr_A TPR2A-domain of HOP; HO 97.8 0.001 3.5E-08 44.3 12.8 104 50-159 3-106 (131)
9 3gw4_A Uncharacterized protein 97.7 0.0037 1.3E-07 45.3 16.0 109 47-159 62-174 (203)
10 3ro2_A PINS homolog, G-protein 97.7 0.00099 3.4E-08 51.0 12.5 103 53-159 7-110 (338)
11 3edt_B KLC 2, kinesin light ch 97.6 0.0014 4.7E-08 49.3 12.4 111 47-159 39-154 (283)
12 3gw4_A Uncharacterized protein 97.6 0.00079 2.7E-08 48.9 10.6 106 50-159 25-134 (203)
13 2dba_A Smooth muscle cell asso 97.6 0.0032 1.1E-07 43.1 12.9 99 51-159 28-126 (148)
14 4gco_A Protein STI-1; structur 97.5 0.0018 6.3E-08 45.7 11.7 100 47-159 9-108 (126)
15 3ulq_A Response regulator aspa 97.5 0.0083 2.8E-07 48.7 17.0 99 57-159 109-211 (383)
16 3edt_B KLC 2, kinesin light ch 97.5 0.0015 5E-08 49.1 11.6 112 47-160 81-197 (283)
17 3sf4_A G-protein-signaling mod 97.5 0.0021 7.1E-08 51.2 13.1 104 52-159 10-114 (406)
18 3nf1_A KLC 1, kinesin light ch 97.5 0.0016 5.6E-08 49.9 11.8 111 47-159 107-222 (311)
19 2xev_A YBGF; tetratricopeptide 97.4 0.0026 9E-08 43.0 11.1 100 53-159 4-103 (129)
20 4b4t_O 26S proteasome regulato 97.4 0.001 3.4E-08 57.3 10.8 95 62-160 87-197 (393)
21 3ro2_A PINS homolog, G-protein 97.4 0.0073 2.5E-07 46.0 14.6 109 47-159 179-290 (338)
22 4a1s_A PINS, partner of inscut 97.4 0.0044 1.5E-07 50.1 13.7 108 48-159 45-153 (411)
23 3rkv_A Putative peptidylprolyl 97.4 0.0017 5.7E-08 46.7 10.0 103 47-159 7-124 (162)
24 3nf1_A KLC 1, kinesin light ch 97.4 0.0025 8.5E-08 48.8 11.2 111 47-159 65-180 (311)
25 2qfc_A PLCR protein; TPR, HTH, 97.4 0.007 2.4E-07 47.8 14.1 107 48-158 152-263 (293)
26 3sf4_A G-protein-signaling mod 97.3 0.016 5.4E-07 46.0 16.0 109 47-159 223-334 (406)
27 3q15_A PSP28, response regulat 97.3 0.0059 2E-07 49.8 13.8 110 47-160 137-250 (378)
28 2lni_A Stress-induced-phosphop 97.3 0.0037 1.3E-07 41.9 10.5 98 49-159 14-111 (133)
29 3u3w_A Transcriptional activat 97.3 0.014 4.8E-07 46.0 15.5 126 29-159 132-264 (293)
30 3uq3_A Heat shock protein STI1 97.3 0.0028 9.5E-08 47.2 10.5 103 51-160 5-107 (258)
31 4a1s_A PINS, partner of inscut 97.3 0.0041 1.4E-07 50.2 12.2 109 47-159 219-330 (411)
32 3upv_A Heat shock protein STI1 97.3 0.0064 2.2E-07 41.5 11.5 95 52-159 5-99 (126)
33 3ulq_A Response regulator aspa 97.2 0.0077 2.7E-07 48.9 13.6 110 47-160 139-252 (383)
34 3q15_A PSP28, response regulat 97.2 0.0049 1.7E-07 50.3 12.0 104 53-160 103-210 (378)
35 1elw_A TPR1-domain of HOP; HOP 97.2 0.011 3.6E-07 38.4 11.3 97 51-160 4-100 (118)
36 2ifu_A Gamma-SNAP; membrane fu 97.2 0.0065 2.2E-07 48.6 12.2 106 49-159 114-222 (307)
37 1a17_A Serine/threonine protei 97.2 0.01 3.4E-07 41.4 11.7 95 52-157 48-142 (166)
38 2vyi_A SGTA protein; chaperone 97.1 0.014 4.9E-07 38.4 11.9 99 48-159 9-107 (131)
39 2qfc_A PLCR protein; TPR, HTH, 97.1 0.025 8.4E-07 44.6 15.1 104 52-159 116-223 (293)
40 2kck_A TPR repeat; tetratricop 97.1 0.0059 2E-07 39.4 9.6 99 52-161 7-106 (112)
41 2fbn_A 70 kDa peptidylprolyl i 97.1 0.013 4.3E-07 43.3 12.5 102 48-159 35-149 (198)
42 3sz7_A HSC70 cochaperone (SGT) 97.1 0.0084 2.9E-07 43.0 11.1 99 48-159 8-106 (164)
43 2fo7_A Synthetic consensus TPR 97.1 0.012 4E-07 38.7 11.1 96 51-159 35-130 (136)
44 3q49_B STIP1 homology and U bo 97.1 0.011 3.6E-07 40.4 11.1 96 51-159 9-104 (137)
45 3vtx_A MAMA; tetratricopeptide 97.0 0.0087 3E-07 43.2 10.5 62 53-119 7-68 (184)
46 2ifu_A Gamma-SNAP; membrane fu 97.0 0.014 4.8E-07 46.6 12.4 115 41-159 67-182 (307)
47 3qky_A Outer membrane assembly 96.9 0.019 6.6E-07 44.0 12.5 102 51-159 15-124 (261)
48 1na0_A Designed protein CTPR3; 96.9 0.022 7.5E-07 37.1 11.1 96 51-159 9-104 (125)
49 2l6j_A TPR repeat-containing p 96.9 0.0028 9.7E-08 41.6 6.2 97 52-155 5-101 (111)
50 1hh8_A P67PHOX, NCF-2, neutrop 96.8 0.021 7.1E-07 41.9 11.4 102 52-160 38-149 (213)
51 3qky_A Outer membrane assembly 96.8 0.023 7.7E-07 43.6 12.0 109 47-159 48-175 (261)
52 1qqe_A Vesicular transport pro 96.8 0.034 1.2E-06 44.0 13.3 108 48-159 74-185 (292)
53 2vq2_A PILW, putative fimbrial 96.8 0.028 9.7E-07 40.7 11.6 97 52-159 77-174 (225)
54 3as5_A MAMA; tetratricopeptide 96.7 0.033 1.1E-06 38.8 11.4 96 51-159 42-137 (186)
55 3u4t_A TPR repeat-containing p 96.7 0.022 7.5E-07 43.0 11.1 98 53-160 39-136 (272)
56 3as5_A MAMA; tetratricopeptide 96.7 0.036 1.2E-06 38.6 11.2 96 51-159 76-171 (186)
57 4ga2_A E3 SUMO-protein ligase 96.7 0.037 1.3E-06 39.7 11.5 98 47-157 27-124 (150)
58 3hym_B Cell division cycle pro 96.6 0.044 1.5E-06 42.1 12.5 100 53-159 161-263 (330)
59 2ho1_A Type 4 fimbrial biogene 96.6 0.047 1.6E-06 40.8 12.2 97 52-159 106-202 (252)
60 3u3w_A Transcriptional activat 96.6 0.19 6.4E-06 39.4 16.8 110 47-159 71-182 (293)
61 4i17_A Hypothetical protein; T 96.6 0.039 1.3E-06 41.2 11.5 100 52-160 43-145 (228)
62 2vgx_A Chaperone SYCD; alterna 96.5 0.039 1.3E-06 39.7 10.9 97 50-159 20-116 (148)
63 3uq3_A Heat shock protein STI1 96.5 0.039 1.3E-06 40.8 11.0 98 49-159 137-234 (258)
64 2fo7_A Synthetic consensus TPR 96.5 0.049 1.7E-06 35.6 10.4 94 52-158 2-95 (136)
65 3ieg_A DNAJ homolog subfamily 96.5 0.048 1.6E-06 42.1 11.7 96 52-160 4-99 (359)
66 3u4t_A TPR repeat-containing p 96.5 0.023 7.9E-07 42.9 9.7 97 53-159 5-101 (272)
67 4g1t_A Interferon-induced prot 96.4 0.035 1.2E-06 45.7 11.1 107 51-159 51-165 (472)
68 2vq2_A PILW, putative fimbrial 96.4 0.052 1.8E-06 39.2 10.9 27 52-78 43-69 (225)
69 1qqe_A Vesicular transport pro 96.4 0.029 9.9E-07 44.4 10.2 108 48-159 34-145 (292)
70 2e2e_A Formate-dependent nitri 96.4 0.032 1.1E-06 40.0 9.6 95 52-159 45-142 (177)
71 1p5q_A FKBP52, FK506-binding p 96.4 0.057 2E-06 44.1 12.2 100 50-159 146-257 (336)
72 1xnf_A Lipoprotein NLPI; TPR, 96.4 0.12 4.1E-06 38.7 13.1 62 53-119 79-140 (275)
73 1hz4_A MALT regulatory protein 96.3 0.091 3.1E-06 42.0 13.1 104 52-159 15-120 (373)
74 4i17_A Hypothetical protein; T 96.3 0.06 2.1E-06 40.1 11.3 96 52-159 8-103 (228)
75 2xcb_A PCRH, regulatory protei 96.3 0.067 2.3E-06 37.5 10.9 96 51-159 18-113 (142)
76 3ieg_A DNAJ homolog subfamily 96.3 0.11 3.8E-06 40.0 13.0 98 52-159 72-181 (359)
77 2q7f_A YRRB protein; TPR, prot 96.3 0.047 1.6E-06 40.2 10.3 94 52-158 92-185 (243)
78 2ho1_A Type 4 fimbrial biogene 96.3 0.054 1.9E-06 40.4 10.8 98 51-159 71-168 (252)
79 2q7f_A YRRB protein; TPR, prot 96.2 0.068 2.3E-06 39.3 11.0 96 51-159 57-152 (243)
80 1hh8_A P67PHOX, NCF-2, neutrop 96.2 0.076 2.6E-06 38.8 10.9 92 53-160 8-99 (213)
81 2gw1_A Mitochondrial precursor 96.2 0.1 3.4E-06 42.8 12.6 99 47-159 2-100 (514)
82 1hz4_A MALT regulatory protein 96.1 0.26 8.9E-06 39.3 14.8 107 49-159 133-242 (373)
83 1kt0_A FKBP51, 51 kDa FK506-bi 96.1 0.054 1.8E-06 46.3 11.1 101 49-159 266-378 (457)
84 3hym_B Cell division cycle pro 96.1 0.12 4E-06 39.6 12.0 95 52-159 91-186 (330)
85 3k9i_A BH0479 protein; putativ 96.1 0.053 1.8E-06 36.7 9.0 68 47-119 23-90 (117)
86 3gyz_A Chaperone protein IPGC; 96.1 0.081 2.8E-06 38.9 10.6 98 49-159 34-131 (151)
87 1a17_A Serine/threonine protei 96.1 0.15 5.1E-06 35.2 11.5 95 48-155 10-104 (166)
88 3vtx_A MAMA; tetratricopeptide 96.0 0.13 4.3E-06 36.8 11.1 62 53-119 41-102 (184)
89 2yhc_A BAMD, UPF0169 lipoprote 96.0 0.28 9.5E-06 36.9 13.4 111 48-159 38-174 (225)
90 1hxi_A PEX5, peroxisome target 95.9 0.17 5.7E-06 35.0 11.1 95 53-160 19-113 (121)
91 2y4t_A DNAJ homolog subfamily 95.9 0.15 5.1E-06 41.3 12.3 102 52-159 212-322 (450)
92 1ihg_A Cyclophilin 40; ppiase 95.9 0.074 2.5E-06 44.5 10.7 100 50-159 222-334 (370)
93 1fch_A Peroxisomal targeting s 95.8 0.12 4E-06 40.6 11.1 96 51-159 217-312 (368)
94 2y4t_A DNAJ homolog subfamily 95.8 0.12 4E-06 42.0 11.2 97 51-160 26-122 (450)
95 3cv0_A Peroxisome targeting si 95.7 0.18 6E-06 38.6 11.6 101 52-159 207-313 (327)
96 4eqf_A PEX5-related protein; a 95.7 0.095 3.3E-06 41.5 10.3 95 52-159 214-308 (365)
97 3cv0_A Peroxisome targeting si 95.7 0.15 5.2E-06 38.9 11.1 95 52-159 173-267 (327)
98 2c2l_A CHIP, carboxy terminus 95.6 0.11 3.6E-06 41.2 10.2 95 52-159 5-99 (281)
99 2yhc_A BAMD, UPF0169 lipoprote 95.6 0.22 7.6E-06 37.5 11.6 66 52-119 5-70 (225)
100 4eqf_A PEX5-related protein; a 95.5 0.14 4.7E-06 40.6 10.6 95 52-159 66-160 (365)
101 2pl2_A Hypothetical conserved 95.5 0.32 1.1E-05 36.5 12.2 95 52-159 6-111 (217)
102 4b4t_Q 26S proteasome regulato 95.5 0.11 3.9E-06 42.0 10.1 102 52-158 56-161 (434)
103 2xev_A YBGF; tetratricopeptide 95.4 0.34 1.2E-05 32.2 11.3 71 47-119 35-105 (129)
104 1fch_A Peroxisomal targeting s 95.4 0.21 7.2E-06 39.1 11.1 95 52-159 65-159 (368)
105 3ma5_A Tetratricopeptide repea 95.3 0.17 5.9E-06 33.5 9.0 74 52-132 8-81 (100)
106 4ga2_A E3 SUMO-protein ligase 95.2 0.085 2.9E-06 37.7 7.7 90 57-159 3-92 (150)
107 1xnf_A Lipoprotein NLPI; TPR, 95.1 0.24 8.3E-06 37.0 10.4 99 47-158 39-137 (275)
108 2xpi_A Anaphase-promoting comp 95.0 0.22 7.4E-06 42.1 10.8 98 52-159 476-577 (597)
109 3fp2_A TPR repeat-containing p 95.0 0.13 4.6E-06 42.5 9.3 96 47-155 21-116 (537)
110 2xpi_A Anaphase-promoting comp 95.0 0.3 1E-05 41.2 11.6 101 53-159 443-543 (597)
111 3fp2_A TPR repeat-containing p 94.9 0.24 8.2E-06 41.0 10.6 94 53-159 312-405 (537)
112 1ouv_A Conserved hypothetical 94.9 0.3 1E-05 37.2 10.5 27 52-78 39-69 (273)
113 2pl2_A Hypothetical conserved 94.9 0.13 4.5E-06 38.7 8.3 92 52-157 119-210 (217)
114 4g1t_A Interferon-induced prot 94.9 0.16 5.5E-06 41.6 9.4 105 52-159 335-457 (472)
115 2if4_A ATFKBP42; FKBP-like, al 94.8 0.091 3.1E-06 43.0 7.7 100 50-159 178-291 (338)
116 3urz_A Uncharacterized protein 94.7 0.78 2.7E-05 34.1 12.3 95 57-160 60-185 (208)
117 2gw1_A Mitochondrial precursor 94.6 0.2 7E-06 41.0 9.2 100 53-159 340-442 (514)
118 3k9i_A BH0479 protein; putativ 94.5 0.45 1.5E-05 31.9 9.6 54 64-119 3-56 (117)
119 2vsy_A XCC0866; transferase, g 94.5 0.56 1.9E-05 40.3 12.2 96 51-159 57-155 (568)
120 1w3b_A UDP-N-acetylglucosamine 94.4 0.75 2.6E-05 36.7 12.0 93 53-158 239-331 (388)
121 2kat_A Uncharacterized protein 94.4 0.52 1.8E-05 31.2 9.5 65 52-121 20-84 (115)
122 4abn_A Tetratricopeptide repea 94.3 0.88 3E-05 38.7 13.0 95 51-159 102-206 (474)
123 3n71_A Histone lysine methyltr 94.3 2.4 8E-05 37.2 16.0 116 41-157 341-460 (490)
124 2ond_A Cleavage stimulation fa 94.3 0.54 1.9E-05 37.0 10.9 64 52-119 100-163 (308)
125 1na3_A Designed protein CTPR2; 94.2 0.32 1.1E-05 30.2 7.8 65 50-119 8-72 (91)
126 2hr2_A Hypothetical protein; a 94.2 1.2 4.1E-05 33.8 12.2 106 51-159 11-129 (159)
127 2vyi_A SGTA protein; chaperone 94.1 0.56 1.9E-05 30.3 9.1 64 51-119 46-109 (131)
128 3urz_A Uncharacterized protein 94.1 0.87 3E-05 33.8 11.3 95 52-159 5-115 (208)
129 1w3b_A UDP-N-acetylglucosamine 94.1 0.35 1.2E-05 38.6 9.5 64 51-119 67-130 (388)
130 1wao_1 Serine/threonine protei 94.1 0.11 3.9E-06 44.8 6.9 95 51-156 40-134 (477)
131 2v5f_A Prolyl 4-hydroxylase su 94.1 0.4 1.4E-05 32.4 8.5 82 54-141 8-93 (104)
132 4gyw_A UDP-N-acetylglucosamine 93.9 0.49 1.7E-05 43.5 11.2 96 51-159 43-138 (723)
133 1ouv_A Conserved hypothetical 93.5 0.88 3E-05 34.5 10.5 93 50-159 73-177 (273)
134 2dba_A Smooth muscle cell asso 93.4 1.1 3.8E-05 29.9 10.6 69 47-120 61-129 (148)
135 3mkr_A Coatomer subunit epsilo 93.3 0.7 2.4E-05 36.7 10.0 56 54-119 104-159 (291)
136 3mkr_A Coatomer subunit epsilo 93.3 0.56 1.9E-05 37.3 9.4 97 52-159 131-227 (291)
137 4f3v_A ESX-1 secretion system 93.2 0.58 2E-05 38.6 9.5 97 51-159 102-198 (282)
138 4abn_A Tetratricopeptide repea 93.0 1.2 4.2E-05 37.8 11.6 94 52-159 138-248 (474)
139 3sz7_A HSC70 cochaperone (SGT) 92.9 1.3 4.6E-05 31.1 10.0 65 51-120 45-109 (164)
140 3mv2_B Coatomer subunit epsilo 92.9 1.3 4.5E-05 37.0 11.4 98 54-157 103-203 (310)
141 2vsy_A XCC0866; transferase, g 92.8 1.1 3.7E-05 38.5 11.1 94 52-158 24-117 (568)
142 4gyw_A UDP-N-acetylglucosamine 92.7 0.95 3.2E-05 41.6 11.1 96 51-159 77-172 (723)
143 1elr_A TPR2A-domain of HOP; HO 92.7 0.96 3.3E-05 29.3 8.4 66 52-119 39-108 (131)
144 1na0_A Designed protein CTPR3; 92.7 0.75 2.5E-05 29.5 7.8 63 52-119 44-106 (125)
145 2xcb_A PCRH, regulatory protei 92.6 1 3.6E-05 31.1 9.0 65 51-120 52-116 (142)
146 2ond_A Cleavage stimulation fa 92.2 0.63 2.2E-05 36.7 8.2 67 52-120 204-271 (308)
147 3upv_A Heat shock protein STI1 92.0 0.88 3E-05 30.4 7.8 64 52-120 39-102 (126)
148 3gyz_A Chaperone protein IPGC; 92.0 1.2 4.3E-05 32.3 9.0 65 51-120 70-134 (151)
149 3qou_A Protein YBBN; thioredox 91.9 1.3 4.6E-05 34.8 9.8 101 52-160 118-247 (287)
150 3rjv_A Putative SEL1 repeat pr 91.8 1.7 5.7E-05 32.5 9.8 27 52-78 19-45 (212)
151 4gco_A Protein STI-1; structur 91.7 1.5 5.3E-05 30.2 9.0 64 51-119 47-110 (126)
152 1p5q_A FKBP52, FK506-binding p 91.6 2.8 9.5E-05 33.9 11.6 90 51-153 196-285 (336)
153 1elw_A TPR1-domain of HOP; HOP 91.5 1.1 3.9E-05 28.3 7.5 64 51-119 38-101 (118)
154 2r5s_A Uncharacterized protein 91.0 2.5 8.5E-05 30.2 9.8 96 51-159 40-135 (176)
155 4gcn_A Protein STI-1; structur 91.0 1.2 4.2E-05 30.6 7.8 78 52-135 43-123 (127)
156 2lni_A Stress-induced-phosphop 90.7 0.97 3.3E-05 29.5 6.7 64 51-119 50-113 (133)
157 3q49_B STIP1 homology and U bo 90.4 1.3 4.4E-05 29.5 7.3 65 51-120 43-107 (137)
158 3mkq_A Coatomer beta'-subunit; 89.7 2.2 7.6E-05 37.4 10.0 81 52-158 682-762 (814)
159 2fbn_A 70 kDa peptidylprolyl i 89.2 4.8 0.00016 29.0 10.1 63 52-119 89-151 (198)
160 2vgx_A Chaperone SYCD; alterna 89.2 4.4 0.00015 28.5 9.8 65 51-120 55-119 (148)
161 1wao_1 Serine/threonine protei 88.9 1.5 5.1E-05 37.7 8.1 94 49-155 4-97 (477)
162 1kt0_A FKBP51, 51 kDa FK506-bi 88.7 4.2 0.00014 34.4 10.8 64 51-119 317-380 (457)
163 2pzi_A Probable serine/threoni 88.5 1.1 3.6E-05 40.3 7.2 25 136-160 538-562 (681)
164 3n71_A Histone lysine methyltr 88.5 7.6 0.00026 33.9 12.5 102 56-160 314-421 (490)
165 1hxi_A PEX5, peroxisome target 88.4 1.4 4.9E-05 30.1 6.4 79 31-119 36-114 (121)
166 3u64_A Protein TP_0956; tetrat 88.2 0.97 3.3E-05 38.0 6.3 79 52-135 200-284 (301)
167 2ooe_A Cleavage stimulation fa 87.7 1.7 5.9E-05 36.8 7.7 67 52-120 426-493 (530)
168 3rkv_A Putative peptidylprolyl 87.3 3 0.0001 29.1 7.7 64 51-119 63-126 (162)
169 2kc7_A BFR218_protein; tetratr 87.2 4 0.00014 25.7 9.3 61 54-119 3-64 (99)
170 2ooe_A Cleavage stimulation fa 86.8 3.5 0.00012 34.8 9.1 64 52-119 322-385 (530)
171 2l6j_A TPR repeat-containing p 86.7 2.6 8.9E-05 26.7 6.6 33 52-85 39-71 (111)
172 1pc2_A Mitochondria fission pr 86.6 6 0.0002 29.8 9.3 83 66-156 13-95 (152)
173 4b4t_S RPN3, 26S proteasome re 84.7 1.5 5E-05 39.6 5.9 65 91-159 233-297 (523)
174 3rjv_A Putative SEL1 repeat pr 84.0 11 0.00037 27.9 11.9 97 51-159 85-195 (212)
175 3qww_A SET and MYND domain-con 83.6 10 0.00035 32.6 10.6 94 64-160 311-410 (433)
176 1ihg_A Cyclophilin 40; ppiase 83.4 18 0.0006 29.8 14.0 95 48-155 270-364 (370)
177 3qww_A SET and MYND domain-con 82.4 11 0.00037 32.4 10.3 81 41-122 330-414 (433)
178 2h6f_A Protein farnesyltransfe 82.0 4.6 0.00016 33.8 7.6 94 52-158 132-226 (382)
179 4f3v_A ESX-1 secretion system 81.6 20 0.00069 29.3 12.3 99 53-159 137-235 (282)
180 2r5s_A Uncharacterized protein 81.4 3.8 0.00013 29.1 6.1 73 32-112 94-166 (176)
181 2oo2_A Hypothetical protein AF 81.1 7 0.00024 26.9 7.0 55 21-78 4-62 (86)
182 2c2l_A CHIP, carboxy terminus 80.9 11 0.00037 29.4 9.1 64 52-120 39-102 (281)
183 2kck_A TPR repeat; tetratricop 80.9 4.1 0.00014 25.3 5.5 65 52-119 41-106 (112)
184 1na3_A Designed protein CTPR2; 80.7 3.5 0.00012 25.1 5.0 30 51-81 43-72 (91)
185 2xm6_A Protein corresponding t 80.6 14 0.00048 30.7 10.2 26 53-78 41-70 (490)
186 2h6f_A Protein farnesyltransfe 80.5 8.1 0.00028 32.3 8.7 98 49-159 95-193 (382)
187 2xm6_A Protein corresponding t 80.2 15 0.0005 30.6 10.2 61 51-118 75-143 (490)
188 2pzi_A Probable serine/threoni 80.0 9.6 0.00033 34.0 9.4 88 62-159 402-494 (681)
189 2e2e_A Formate-dependent nitri 79.6 7 0.00024 27.3 6.9 64 52-120 79-145 (177)
190 2rg8_A Programmed cell death p 76.7 11 0.00037 28.5 7.6 52 46-102 5-56 (165)
191 2hr2_A Hypothetical protein; a 74.1 25 0.00086 26.3 9.0 66 53-120 59-132 (159)
192 1nzn_A CGI-135 protein, fissio 74.0 23 0.00078 25.8 9.9 84 64-155 14-97 (126)
193 4e6h_A MRNA 3'-END-processing 72.6 14 0.00047 33.8 8.4 65 54-120 507-571 (679)
194 2kc7_A BFR218_protein; tetratr 72.4 4.1 0.00014 25.6 3.7 29 53-82 37-65 (99)
195 1xi4_A Clathrin heavy chain; a 72.3 55 0.0019 33.4 13.0 85 21-115 957-1046(1630)
196 3qwp_A SET and MYND domain-con 72.2 45 0.0015 28.3 13.4 95 61-159 297-398 (429)
197 1xi4_A Clathrin heavy chain; a 71.4 35 0.0012 34.8 11.5 60 51-120 1105-1164(1630)
198 2ion_A PDCD4, programmed cell 71.2 29 0.00098 25.7 9.4 51 47-102 5-55 (152)
199 1klx_A Cysteine rich protein B 69.2 19 0.00066 24.9 7.0 62 51-119 57-126 (138)
200 2nsz_A Programmed cell death p 69.1 29 0.00098 24.8 9.5 50 48-102 4-53 (129)
201 2if4_A ATFKBP42; FKBP-like, al 68.9 7.6 0.00026 31.3 5.4 63 52-119 231-293 (338)
202 2pmr_A Uncharacterized protein 68.6 11 0.00039 25.9 5.4 67 24-102 5-78 (87)
203 3qwp_A SET and MYND domain-con 66.5 59 0.002 27.5 11.8 86 41-127 319-408 (429)
204 3bee_A Putative YFRE protein; 66.2 12 0.00042 24.8 5.2 31 52-83 44-74 (93)
205 3qou_A Protein YBBN; thioredox 65.7 34 0.0012 26.4 8.5 27 52-78 152-178 (287)
206 2kat_A Uncharacterized protein 65.5 24 0.00082 22.7 9.7 78 69-159 3-80 (115)
207 1deq_A Fibrinogen (alpha chain 61.7 37 0.0013 29.5 8.4 97 20-121 57-158 (390)
208 3e4b_A ALGK; tetratricopeptide 60.5 17 0.00057 30.5 6.1 32 53-85 178-212 (452)
209 1klx_A Cysteine rich protein B 60.4 38 0.0013 23.3 8.3 86 57-159 31-124 (138)
210 1nzn_A CGI-135 protein, fissio 59.7 13 0.00046 27.0 4.7 42 47-89 70-111 (126)
211 1zu2_A Mitochondrial import re 56.6 44 0.0015 25.0 7.2 80 34-119 24-113 (158)
212 1ug3_A EIF4GI, eukaryotic prot 55.8 50 0.0017 27.2 8.1 52 46-102 6-57 (339)
213 1b89_A Protein (clathrin heavy 54.9 27 0.00091 30.7 6.5 25 53-77 124-148 (449)
214 3ax2_A Mitochondrial import re 52.1 37 0.0013 22.5 5.4 40 52-92 18-57 (73)
215 2v5f_A Prolyl 4-hydroxylase su 51.6 47 0.0016 21.7 8.5 67 90-159 6-73 (104)
216 3mv2_B Coatomer subunit epsilo 50.8 1E+02 0.0035 25.3 9.8 122 24-155 105-234 (310)
217 3ffl_A Anaphase-promoting comp 50.3 82 0.0028 24.0 8.6 67 90-159 21-90 (167)
218 1zu2_A Mitochondrial import re 48.6 81 0.0028 23.4 8.8 96 59-159 10-118 (158)
219 1pc2_A Mitochondria fission pr 45.8 90 0.0031 23.2 10.7 91 14-119 7-100 (152)
220 4e6h_A MRNA 3'-END-processing 45.1 44 0.0015 30.4 6.6 64 54-119 381-463 (679)
221 3ma5_A Tetratricopeptide repea 42.9 62 0.0021 20.5 8.2 61 90-159 8-68 (100)
222 3l6a_A Eukaryotic translation 42.7 1.5E+02 0.0051 24.8 9.3 53 46-102 7-59 (364)
223 3e4b_A ALGK; tetratricopeptide 41.7 20 0.00069 30.0 3.5 24 55-78 217-244 (452)
224 2v6y_A AAA family ATPase, P60 40.3 69 0.0024 21.2 5.5 53 57-121 17-73 (83)
225 3t5x_A PCI domain-containing p 39.0 97 0.0033 23.6 6.9 55 47-102 10-66 (203)
226 4g26_A Pentatricopeptide repea 38.0 1.2E+02 0.0042 26.0 8.1 62 54-119 143-204 (501)
227 2cpt_A SKD1 protein, vacuolar 35.8 1.1E+02 0.0039 21.5 7.5 23 56-78 23-45 (117)
228 3t5v_B Nuclear mRNA export pro 35.6 63 0.0022 28.2 5.9 67 92-159 179-247 (455)
229 1b89_A Protein (clathrin heavy 34.9 42 0.0014 29.4 4.6 86 53-160 150-235 (449)
230 3mkq_B Coatomer subunit alpha; 33.0 1.6E+02 0.0055 22.4 10.3 26 53-78 36-61 (177)
231 1y8m_A FIS1; mitochondria, unk 32.3 1.2E+02 0.0042 22.4 6.2 69 19-91 48-116 (144)
232 4b4t_P 26S proteasome regulato 31.5 2.4E+02 0.0081 23.8 14.4 75 47-122 173-250 (445)
233 4a5x_A MITD1, MIT domain-conta 30.8 1.2E+02 0.0041 20.2 7.7 23 56-78 21-43 (86)
234 4g26_A Pentatricopeptide repea 30.8 2.5E+02 0.0087 24.0 11.4 91 53-156 107-199 (501)
235 2bn5_A PSI; nuclear protein, s 30.4 29 0.001 19.8 1.8 21 57-77 8-28 (33)
236 2w2u_A Hypothetical P60 katani 29.6 1.2E+02 0.0042 20.0 6.2 22 57-78 25-46 (83)
237 1om2_A Protein (mitochondrial 29.3 77 0.0026 22.0 4.3 40 53-93 22-61 (95)
238 3pvv_A Chromosomal replication 28.5 1.1E+02 0.0038 21.0 5.1 27 96-122 54-80 (101)
239 3ghg_A Fibrinogen alpha chain; 28.3 94 0.0032 28.1 5.7 96 21-120 55-154 (562)
240 1zbp_A Hypothetical protein VP 27.8 2.1E+02 0.007 23.4 7.4 110 29-155 14-123 (273)
241 2v6x_A Vacuolar protein sortin 26.4 1.4E+02 0.0047 19.4 6.9 23 56-78 18-40 (85)
242 2zu6_B Programmed cell death p 24.5 2.9E+02 0.0098 22.5 8.6 52 46-102 161-212 (307)
243 1m1j_A Fibrinogen alpha subuni 24.1 2.7E+02 0.0091 24.8 7.7 98 20-120 55-155 (491)
244 2rpa_A Katanin P60 ATPase-cont 23.8 76 0.0026 21.2 3.3 53 54-115 15-67 (78)
245 3efz_A 14-3-3 protein; 14-3-3, 23.5 1.7E+02 0.0059 23.9 6.1 33 48-81 192-226 (268)
246 2e2a_A Protein (enzyme IIA); h 23.1 84 0.0029 22.1 3.6 26 132-157 20-45 (105)
247 1whr_A Hypothetical KIAA1002 p 23.0 85 0.0029 22.6 3.7 50 13-62 12-73 (124)
248 1vh6_A Flagellar protein FLIS; 22.9 1.6E+02 0.0055 21.5 5.4 51 69-121 7-64 (145)
249 3iqu_A 14-3-3 protein sigma; s 22.6 1.9E+02 0.0067 23.0 6.2 30 49-78 172-203 (236)
250 3k1s_A PTS system, cellobiose- 22.5 87 0.003 22.1 3.6 26 132-157 22-47 (109)
251 2rmf_A Urocortin, HUCN1; CRF l 22.4 1.3E+02 0.0044 17.7 3.9 16 87-102 5-20 (40)
252 1wcr_A PTS system, N, N'-diace 22.3 90 0.0031 21.8 3.6 26 132-157 18-43 (103)
253 3dra_A Protein farnesyltransfe 22.1 73 0.0025 25.8 3.6 27 52-78 259-285 (306)
254 2crb_A Nuclear receptor bindin 22.0 88 0.003 21.9 3.5 25 54-78 18-42 (97)
255 3m6y_A 4-hydroxy-2-oxoglutarat 21.5 9.3 0.00032 31.6 -1.9 51 64-130 43-101 (275)
256 1a93_B MAX protein, coiled coi 20.8 86 0.0029 17.9 2.6 26 24-51 5-31 (34)
257 2uy1_A Cleavage stimulation fa 20.6 3.1E+02 0.011 23.2 7.5 102 52-159 214-347 (493)
258 2l27_B Peptide agonist; CRF, E 20.1 75 0.0026 18.6 2.3 14 89-102 5-18 (38)
259 2zu6_B Programmed cell death p 20.1 2.5E+02 0.0085 22.9 6.5 42 56-102 8-49 (307)
No 1
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-37 Score=270.20 Aligned_cols=155 Identities=35% Similarity=0.637 Sum_probs=150.4
Q ss_pred CchhHHHHHHhcCC--------------------CcCHHHHHHHHHHHHHHHHHHHHHHH----hcCCCchHHHHHHHHh
Q psy398 1 MAPYYKEVCEEFGW--------------------KMDEKFYTEMKDANEKRLKELDLEHE----KNMMDEEDQVSGIWQA 56 (162)
Q Consensus 1 m~p~Y~~l~~~~~~--------------------~~D~~~~~~~~~~n~~~l~~Le~~lk----~Nlg~~~~eIr~~~~~ 56 (162)
|+|||+++|+++.+ |+|++|++.|.++|+.++++|++.++ +|.| +.|||+++.+
T Consensus 59 ma~~y~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~--e~e~~~~~~~ 136 (429)
T 4b4t_R 59 MAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCKKNESKIKELNEKIQKLEEDDEG--ELEQAQAWIN 136 (429)
T ss_dssp CHHHHHHHHHHSCCCCSCCSSCSHHHHHHHHHTTTTCCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSC--CCCCSSCCHH
T ss_pred CHHHHHHHHHHHhhcccchhhhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHH
Confidence 89999999999864 78999999999999999999999998 6899 9999999999
Q ss_pred hHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHH
Q psy398 57 KLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKA 136 (162)
Q Consensus 57 ~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKv 136 (162)
+|+||+++||+++|+++|.+++ ++|++++|++|++|.+||+++++ +||.++..++.||+.++++ +|||+++||+|+
T Consensus 137 la~~~~~~Gd~~~A~~~~~~~~-~~~~~~~~kid~~l~~irl~l~~-~d~~~~~~~~~ka~~~~~~--~~d~~~~~~lk~ 212 (429)
T 4b4t_R 137 LGEYYAQIGDKDNAEKTLGKSL-SKAISTGAKIDVMLTIARLGFFY-NDQLYVKEKLEAVNSMIEK--GGDWERRNRYKT 212 (429)
T ss_dssp HHHHHHHHCCCTTHHHHHHHHH-HHHTCCCSHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTT--CCCTHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhhhc--CCCHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999 9999999999999999998 999999999999
Q ss_pred HHHHHHhhhhcHHHHHHHhHhhccC
Q psy398 137 YEGVYCLAIRQYCRAAELFVDVIRS 161 (162)
Q Consensus 137 y~gl~~l~~R~fk~AA~lfld~~~T 161 (162)
|.|+++|..|+|+.||++|+++.+|
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 9999999999999999999998776
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.30 E-value=1e-11 Score=108.55 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=95.7
Q ss_pred HhhHhHHHhhcCHHHHHHHHHHhcCCCCCC---hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCC-Cchhh
Q psy398 55 QAKLDYLCSIGDRAEAFKLADSKFADKTNP---KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISG-GDWSA 130 (162)
Q Consensus 55 ~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s---~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~g-gDW~r 130 (162)
..+|.+|...|++.+|++.+.+++ .+|.. ..+.+|+++..+++.... +|++.++..+.+|...... . +||..
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~-~~~~~~dd~~~llev~lle~~~~~~~-~n~~k~k~~l~~a~~~~~a--i~~~p~i 178 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLL-RELKKLDDKNLLVEVQLLESKTYHAL-SNLPKARAALTSARTTANA--IYCPPKV 178 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHHTTSSCTHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--SCCCHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH-HHHhccccchhHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhhcc--CCCCHHH
Confidence 378999999999999999999999 88766 789999999999999999 9999999999999999875 4 89999
Q ss_pred hhHHHHHHHHHHh-hhhcHHHHHHHhHhhcc
Q psy398 131 RNKLKAYEGVYCL-AIRQYCRAAELFVDVIR 160 (162)
Q Consensus 131 rnrLKvy~gl~~l-~~R~fk~AA~lfld~~~ 160 (162)
.++++++.|+++| ..|||+.|+..|+++..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 9999999999999 89999999999999864
No 3
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.41 E-value=2.3e-06 Score=74.89 Aligned_cols=104 Identities=13% Similarity=0.077 Sum_probs=90.8
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCC---CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hhhcCCCch
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADK---TNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL-IEGISGGDW 128 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~---~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l-~e~~~ggDW 128 (162)
-...+|..|.+.||+.+|.+...... -. ......++++.+..+|+++.. +||..+...+.||... ... .+++
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~-~Et~~~~~~~~kve~~l~q~rl~l~~-~d~~~a~~~~~ki~~~~~~~--~~~~ 214 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQ-VETYGSMEMSEKIQFILEQMELSILK-GDYSQATVLSRKILKKTFKN--PKYE 214 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH-HHHCSSSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHS--SCCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH-HHHHhcccHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhccc--CCcH
Confidence 35679999999999999999888854 32 345688999999999999999 9999999999999753 444 6789
Q ss_pred hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
+.+.+++.+.|.+++..|+|.+|++.|.++..
T Consensus 215 ~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 215 SLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999998753
No 4
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=5.5e-05 Score=52.10 Aligned_cols=108 Identities=10% Similarity=0.012 Sum_probs=82.1
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcC
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKS---HRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGIS 124 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g---~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ 124 (162)
..+..++..+|..|...|+.+.|++.|.+++ +.....+ ....+...+-.+.+.. +++.....++.+|-.+...
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~-- 81 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERIAYSNLGNAYIFL-GEFETASEYYKKTLLLARQ-- 81 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHhCCchHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH--
Confidence 4456678899999999999999999999987 5443333 3334555566666666 8999999999999888776
Q ss_pred CCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 125 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 125 ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.++...........|..++..++|.+|.+.|-.++
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 56666666666777888888999999988887664
No 5
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.99 E-value=0.00021 Score=50.52 Aligned_cols=105 Identities=13% Similarity=0.006 Sum_probs=82.8
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh-hhcCCC
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI-EGISGG 126 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~-e~~~gg 126 (162)
.+.-.++..+|.-|.+.|++++|++.|.+++ +..... .+...++-.+-+.. +++........+|-.+- +. ..
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al-~~~p~~---~~~~~nlg~~~~~~-~~~~~A~~~~~~al~~~~~~--~~ 77 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAI-ELDPSN---ITFYNNKAAVYFEE-KKFAECVQFCEKAVEVGRET--RA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHhHHHHHHHh-hhHHHHHHHHHHHHHhCccc--ch
Confidence 5566789999999999999999999999998 544332 34556666666777 99999999999998873 33 45
Q ss_pred chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+|....+.-.-.|..+...++|.+|-+.|-.++
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 666666666667899999999999999987665
No 6
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.94 E-value=0.00042 Score=47.52 Aligned_cols=109 Identities=8% Similarity=-0.045 Sum_probs=87.3
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhc
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT---NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGI 123 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~---~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~ 123 (162)
...+..++..+|..|...|+.++|.+.|.++. +.. ........+...+-.+.+.. +++.....++.++-.+...
T Consensus 45 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~- 121 (164)
T 3ro3_A 45 KAAERIAYSNLGNAYIFLGEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQE- 121 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH-
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhCCcHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH-
Confidence 45556789999999999999999999999977 533 33344556667777777777 9999999999999999776
Q ss_pred CCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 124 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.++...........|..++..+++.+|.+.|-.++
T Consensus 122 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 122 -LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 56655566667778888899999999999987765
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00019 Score=58.71 Aligned_cols=108 Identities=9% Similarity=0.054 Sum_probs=90.7
Q ss_pred HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398 50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT---NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG 126 (162)
Q Consensus 50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~---~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg 126 (162)
....+..+|..|...|++++|.+.+.+.. ..+ ......+++.+.++|+.+.. +|+......+.+|...... .+.
T Consensus 134 ~~~~~~~la~~~~~~g~~~~A~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~-~~~ 210 (434)
T 4b4t_Q 134 KHSLSIKLATLHYQKKQYKDSLALINDLL-REFKKLDDKPSLVDVHLLESKVYHKL-RNLAKSKASLTAARTAANS-IYC 210 (434)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHTTSSCSTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH-SCC
T ss_pred HHHHHHHHHHHHHHccChHHHHHHHHHHH-HHHHhcccchhHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHhhc-CCC
Confidence 34567899999999999999999999865 433 33456889999999999999 9999999999999988543 133
Q ss_pred chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
++....++..+.|.+++..++|.+|...|.+++.
T Consensus 211 ~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 211 PTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 5566788889999999999999999999998764
No 8
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.79 E-value=0.001 Score=44.33 Aligned_cols=104 Identities=14% Similarity=0.041 Sum_probs=81.7
Q ss_pred HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh
Q psy398 50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS 129 (162)
Q Consensus 50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~ 129 (162)
.-.++..+|..|.+.|+.+.|.+.|.++. ...... .++.+.+..+.+.. +++......+.++-.+... .+.+|.
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~-~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAK-ELDPTN---MTYITNQAAVYFEK-GDYNKCRELCEKAIEVGRE-NREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH-STTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCcc---HHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhccc-cchhHH
Confidence 34678899999999999999999999988 543222 45667777777778 9999999999999887432 145665
Q ss_pred hhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 130 ARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 130 rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.....-...|..++..++|.+|.+.|-.++
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 556666678888999999999999987654
No 9
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.73 E-value=0.0037 Score=45.30 Aligned_cols=109 Identities=9% Similarity=-0.053 Sum_probs=88.8
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC----ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTN----PKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEG 122 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~----s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~ 122 (162)
....-.++..+|..|...|+.+.|.+.|.+++ +... .......+...+-.+.+.. +++.....++.++-.+...
T Consensus 62 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~ 139 (203)
T 3gw4_A 62 HTAEHRALHQVGMVERMAGNWDAARRCFLEER-ELLASLPEDPLAASANAYEVATVALHF-GDLAGARQEYEKSLVYAQQ 139 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHcCccHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHh
Confidence 45667789999999999999999999999988 5422 2335566677777777888 9999999999999998776
Q ss_pred cCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 123 ISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 123 ~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.+++..........|..++..+++.+|.+.|-.++
T Consensus 140 --~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 140 --ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 67766666666778888899999999999887765
No 10
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.66 E-value=0.00099 Score=50.99 Aligned_cols=103 Identities=13% Similarity=0.044 Sum_probs=85.7
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCC-CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADK-TNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~-~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.+.-+|..+...|+.+.|.+.|.++. +. ...+....++...+..+.+.. +++.....++.+|-.+... .++....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~--~~~~~~~ 82 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAV-QVGTEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLART--IGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--HTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH-hhCcccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHhhc--ccccHHH
Confidence 56678999999999999999999988 54 344445578888888888888 9999999999999998776 5666666
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
...-...|..+...++|.+|.+.|-.++
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al 110 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHL 110 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777788889999999999999887764
No 11
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.61 E-value=0.0014 Score=49.28 Aligned_cols=111 Identities=10% Similarity=0.010 Sum_probs=87.5
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT-----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE 121 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e 121 (162)
......++..+|..|...|+.+.|++.|.+++ +.. ........+...+-++.+.. +++.....++.+|-.+.+
T Consensus 39 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~ 116 (283)
T 3edt_B 39 HPDVATMLNILALVYRDQNKYKEAAHLLNDAL-AIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIRE 116 (283)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH-HHHHHHcCCcchHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence 35667789999999999999999999999988 553 23355677788888888888 999999999999999876
Q ss_pred hcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 122 GISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 122 ~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+..|.+...........|..+...++|.+|...|-.++
T Consensus 117 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 117 KVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 53334434445555667788888999999999987765
No 12
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.60 E-value=0.00079 Score=48.94 Aligned_cols=106 Identities=11% Similarity=-0.022 Sum_probs=83.7
Q ss_pred HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC---hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398 50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP---KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG 126 (162)
Q Consensus 50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s---~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg 126 (162)
.-.++..+|..|...|+.+.|.+.|.+++ +.... ......+...+-.+.... +++.....++.+|-.+.+. .+
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~--~~ 100 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQ-QQAQKSGDHTAEHRALHQVGMVERMA-GNWDAARRCFLEERELLAS--LP 100 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--SC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH--cC
Confidence 45678899999999999999999999988 63332 334455566666666677 9999999999999999876 56
Q ss_pred -chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 127 -DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 127 -DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
++......-...|..++..++|.+|...|-.++
T Consensus 101 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 101 EDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 444555666677888889999999999988765
No 13
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.56 E-value=0.0032 Score=43.11 Aligned_cols=99 Identities=12% Similarity=-0.048 Sum_probs=79.3
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
-..+..+|..+.+.|+++.|++.|.++. ..........++.+.+..+.+.. +++......+.++-.+-. .+
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~--- 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQAL-GLDATPQDQAVLHRNRAACHLKL-EDYDKAETEASKAIEKDG----GD--- 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTS----CC---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHcccchHHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhCc----cC---
Confidence 4567899999999999999999999999 77666555677888888888888 999999999988877621 22
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.......|..+...++|.+|.+.|-.++
T Consensus 99 -~~~~~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 99 -VKALYRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2344567888888999999999987664
No 14
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.54 E-value=0.0018 Score=45.72 Aligned_cols=100 Identities=11% Similarity=0.037 Sum_probs=76.6
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG 126 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg 126 (162)
+-+.-+++.++|.-|.+.||+++|+++|.+++ +..... .++.+.+-.+-+.. +++........+|-.+- ..
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~----p~ 79 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAV-KRDPEN---AILYSNRAACLTKL-MEFQRALDDCDTCIRLD----SK 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TT
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHhhHHHhh-ccHHHHHHHHHHHHHhh----hh
Confidence 34567789999999999999999999999988 543322 35666666677777 99999999998887762 12
Q ss_pred chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
++ ..-...|..++..++|.+|.+.|-.++
T Consensus 80 ~~----~a~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 80 FI----KGYIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hh----HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 22 234467888899999999999987665
No 15
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.53 E-value=0.0083 Score=48.74 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=78.7
Q ss_pred hHhHHHhhcCHHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc-hhhhh
Q psy398 57 KLDYLCSIGDRAEAFKLADSKFADKT---NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD-WSARN 132 (162)
Q Consensus 57 ~a~~~~~iGD~~~A~~ay~~~~~~~~---~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD-W~rrn 132 (162)
+|.++...|+++.|++.|.++. ... .......++...+-.+.... +++.....+..+|-.+..+ .++ ..+..
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~--~~~~~~~~~ 184 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYM-KQTYFSMDYARQAYEIYKE--HEAYNIRLL 184 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHT--CSTTHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh--CccchHHHH
Confidence 9999999999999999999998 653 33444667777777777777 9999999999999999876 555 33445
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 133 KLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 133 rLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
..-..-|..+...++|.+|-+.|-.++
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al 211 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAY 211 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 555567788888899999988887765
No 16
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.53 E-value=0.0015 Score=49.14 Aligned_cols=112 Identities=14% Similarity=0.084 Sum_probs=87.8
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT-----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE 121 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e 121 (162)
....-.++..+|..|...|+.++|++.|.+++ +.. ............+..+.+.. +++.....++.++-.+.+
T Consensus 81 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~ 158 (283)
T 3edt_B 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKFHPDVAKQLNNLALLCQNQ-GKAEEVEYYYRRALEIYA 158 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHHHHHcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 35667789999999999999999999999988 543 22245677778888888888 999999999999998865
Q ss_pred hcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 122 GISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 122 ~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
...|++..........-|..++..++|.+|.+.|-.++.
T Consensus 159 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 159 TRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 433444444555666778888899999999999987653
No 17
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.53 E-value=0.0021 Score=51.22 Aligned_cols=104 Identities=13% Similarity=0.029 Sum_probs=86.8
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCC-CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADK-TNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~-~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
.++..+|..+...|+.++|+..|.++. .. ........++.+.+..+.+.. +++.....+..+|-.+... .++...
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~--~~~~~~ 85 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAV-QVGTEDLKTLSAIYSQLGNAYFYL-HDYAKALEYHHHDLTLART--IGDQLG 85 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHh--ccccHH
Confidence 356789999999999999999999998 54 344455678888888888888 9999999999999999876 667666
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
....-...|..+...++|.+|...|-.++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 114 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHL 114 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66677778888899999999999887654
No 18
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.51 E-value=0.0016 Score=49.87 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=87.6
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT-----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE 121 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e 121 (162)
......++..+|..|...|+.+.|.+.|.++. +.. ........+...+.++.+.. +++.....++.++-.+.+
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL-EIREKVLGKDHPDVAKQLNNLALLCQNQ-GKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHhcCCCChHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 35667789999999999999999999999998 654 22355667777888888888 999999999999999876
Q ss_pred hcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 122 GISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 122 ~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
...|++...........|..++..++|.+|.+.|-.++
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 52234444445555667888889999999999997765
No 19
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.44 E-value=0.0026 Score=43.04 Aligned_cols=100 Identities=12% Similarity=-0.076 Sum_probs=72.3
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
++..+|.-+.+.|+.+.|.+.|.++. ..........+..+.+-.+.+.. +++......+.++-..- .+.....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~~~~~~-----p~~~~~~ 76 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFL-ELYPNGVYTPNALYWLGESYYAT-RNFQLAEAQFRDLVSRY-----PTHDKAA 76 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSSSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-----TTSTTHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH-HHCCCCcccHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHC-----CCCcccH
Confidence 46678888999999999999999988 54444444556777777777777 89988888888876652 2222223
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 133 KLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 133 rLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
......|..++..+++.+|...|-.++
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~ 103 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVA 103 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344456777888899999988876554
No 20
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.44 E-value=0.001 Score=57.32 Aligned_cols=95 Identities=9% Similarity=-0.004 Sum_probs=75.9
Q ss_pred HhhcCHHHHHHHHHHhcCCCCC--------------ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398 62 CSIGDRAEAFKLADSKFADKTN--------------PKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD 127 (162)
Q Consensus 62 ~~iGD~~~A~~ay~~~~~~~~~--------------s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD 127 (162)
.+..|.++|++...... .+.. .....+.+.+.+.|+.+.. +|...++++|++++.+++. ++|
T Consensus 87 ~~~~d~~~al~~L~~~~-~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~-~d~~~a~~~l~~~~~~l~~--~~~ 162 (393)
T 4b4t_O 87 KDSKDFDESLKYLDDLK-AQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLK-NDLVKARDLLDDLEKTLDK--KDS 162 (393)
T ss_dssp HHTTCHHHHHHHHHHHT-TTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHH--SCC
T ss_pred hhcCCHHHHHHHHHHHH-HHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhc--cCC
Confidence 45678888888887765 4431 1234688889999999999 9999999999999999998 889
Q ss_pred hhhhhHHHHHHH--HHHhhhhcHHHHHHHhHhhcc
Q psy398 128 WSARNKLKAYEG--VYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 128 W~rrnrLKvy~g--l~~l~~R~fk~AA~lfld~~~ 160 (162)
|+.+.+.+.|++ .|+...++|..+...++..++
T Consensus 163 ~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 163 IPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 999999988864 555567788888888777654
No 21
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.43 E-value=0.0073 Score=46.03 Aligned_cols=109 Identities=11% Similarity=0.046 Sum_probs=82.9
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC---hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhc
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP---KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGI 123 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s---~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~ 123 (162)
......++..+|..|...|+.+.|.+.|.++. +.... ..........+.++.+.. +++.....++.++-.+...
T Consensus 179 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~- 255 (338)
T 3ro2_A 179 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL-LIAKEFGDKAAERRAYSNLGNAYIFL-GEFETASEYYKKTLLLARQ- 255 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHhcCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh-
Confidence 45556688899999999999999999999987 54332 333445677777777777 9999999999999888765
Q ss_pred CCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 124 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.++.......-...|..++..++|.+|.+.|-.++
T Consensus 256 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 256 -LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 55655555566667777888899998888876654
No 22
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.40 E-value=0.0044 Score=50.05 Aligned_cols=108 Identities=11% Similarity=0.033 Sum_probs=88.3
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT-NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG 126 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg 126 (162)
..-...+..+|..+...|+++.|++.|.++. +.. ........+.+.+-.+.+.. +++.....++.+|-.+.+. -+
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~--~~ 120 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAI-QAGTEDLRTLSAIYSQLGNAYFYL-GDYNKAMQYHKHDLTLAKS--MN 120 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCSCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH--TT
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HhcccChhHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH--cc
Confidence 4445667789999999999999999999998 543 33444557788888888888 9999999999999998876 56
Q ss_pred chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
|.......-...|..+...++|.+|...|-.++
T Consensus 121 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 121 DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666777788889999999999999887664
No 23
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.39 E-value=0.0017 Score=46.72 Aligned_cols=103 Identities=11% Similarity=-0.025 Sum_probs=78.9
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC---------------hHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP---------------KSHRIDAVFTLFRIAYFHGCDIQAMTA 111 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s---------------~g~kiD~~l~~iRv~~f~~~d~~~v~~ 111 (162)
..+.-..+..+|.-|.+.|+++.|++.|.+++ ..... ......+.+++-.+.+.. +++.....
T Consensus 7 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-~~~~~A~~ 84 (162)
T 3rkv_A 7 KLKSVEALRQKGNELFVQKDYKEAIDAYRDAL-TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI-GDLHEAEE 84 (162)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH-TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-CcHHHHHH
Confidence 44556778999999999999999999999998 54211 344567788888888888 99999999
Q ss_pred HHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 112 AIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 112 ~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
...+|-.+- .++ .+.-...|..++..++|.+|...|-.++
T Consensus 85 ~~~~al~~~-----p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 85 TSSEVLKRE-----ETN---EKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHS-----TTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcC-----Ccc---hHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 988887762 222 2334456888899999999999887654
No 24
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.0025 Score=48.81 Aligned_cols=111 Identities=11% Similarity=0.067 Sum_probs=87.7
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT-----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE 121 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e 121 (162)
......++..+|..|...|+.++|.+.|.++. ... ........+...+..+.+.. +++.....++.++-.+.+
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDAL-AIREKTLGKDHPAVAATLNNLAVLYGKR-GKYKEAEPLCKRALEIRE 142 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHCTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHhCCCChHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHH
Confidence 45667889999999999999999999999988 543 22355677788888888888 999999999999998865
Q ss_pred hcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 122 GISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 122 ~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
...|++...........|..++..++|.+|.+.|-.++
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42234444455556667888889999999999987765
No 25
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.36 E-value=0.007 Score=47.80 Aligned_cols=107 Identities=10% Similarity=0.054 Sum_probs=84.6
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCC----CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhc
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADK----TNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGI 123 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~----~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~ 123 (162)
...-.++..+|..|...|+++.|++.|.+++ +. .......+.+..++-.+.+.. +++.....++.+|-.+...
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal-~~~~~~~~~~~~~~~~~~nlg~~y~~~-~~y~~Al~~~~kal~~~~~- 228 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQIL-KQLEALHDNEEFDVKVRYNHAKALYLD-SRYEESLYQVNKAIEISCR- 228 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhcCccccchHHHHHhHHHHHHHH-hhHHHHHHHHHHHHHHHHh-
Confidence 3456689999999999999999999999987 32 222233346888888888888 9999999999999998765
Q ss_pred CCCchhhhhHHHHHHHHHHhhhhcHHHH-HHHhHhh
Q psy398 124 SGGDWSARNKLKAYEGVYCLAIRQYCRA-AELFVDV 158 (162)
Q Consensus 124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~A-A~lfld~ 158 (162)
.++......+-...|..+...+++.+| ...|-.+
T Consensus 229 -~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 229 -INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp -TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred -cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 667666677777888899999999999 5555444
No 26
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.33 E-value=0.016 Score=46.03 Aligned_cols=109 Identities=8% Similarity=-0.030 Sum_probs=84.7
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhc
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT---NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGI 123 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~---~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~ 123 (162)
...+..++..+|..|...|+.+.|.+.|.++. +.. ........+...+.++.+.. +++.....++.+|-.+...
T Consensus 223 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~~~~- 299 (406)
T 3sf4_A 223 KAAERRAYSNLGNAYIFLGEFETASEYYKKTL-LLARQLKDRAVEAQSCYSLGNTYTLL-QDYEKAIDYHLKHLAIAQE- 299 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHhCcCchHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHh-
Confidence 45556689999999999999999999999977 432 33344466677777777777 9999999999999998766
Q ss_pred CCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 124 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
-++.......-...|..+...++|.+|.+.|-.++
T Consensus 300 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 300 -LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56655555556677788888999999999887664
No 27
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.33 E-value=0.0059 Score=49.77 Aligned_cols=110 Identities=9% Similarity=-0.101 Sum_probs=83.6
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC----hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP----KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEG 122 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s----~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~ 122 (162)
+.+.-.++..+|..|...|+.+.|++.|.+++ +.... ......+...+-.+.+.. +++.....+..+|-.+..+
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~ 214 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQAL-DIYQNHPLYSIRTIQSLFVIAGNYDDF-KHYDKALPHLEAALELAMD 214 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTSTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHHhCCCchhhHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999987 53322 223455555555555666 9999999999999998776
Q ss_pred cCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 123 ISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 123 ~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
-++..........-|..+...++|.+|-+.|-.++.
T Consensus 215 --~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 215 --IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --cCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566554555555678888889999999999887764
No 28
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.32 E-value=0.0037 Score=41.90 Aligned_cols=98 Identities=12% Similarity=0.052 Sum_probs=74.9
Q ss_pred HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch
Q psy398 49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW 128 (162)
Q Consensus 49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW 128 (162)
..-.++..+|..|.+.|+.+.|++.|.++. ...... .++.+.+..+.+.. +++......+.++-.+-. .++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~----~~~ 84 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAI-KRNPKD---AKLYSNRAACYTKL-LEFQLALKDCEECIQLEP----TFI 84 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHH-TTCTTC---HHHHHHHHHHHTTT-TCHHHHHHHHHHHHHHCT----TCH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCc---HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC----Cch
Confidence 345678899999999999999999999998 544322 46667777777777 899999999888877631 222
Q ss_pred hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
......|..++..++|.+|.+.|-.++
T Consensus 85 ----~~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 85 ----KGYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344566778888999999999987654
No 29
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.32 E-value=0.014 Score=46.00 Aligned_cols=126 Identities=12% Similarity=0.064 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHH--hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC----CChHHHHHHHHHHHHHHHHh
Q psy398 29 EKRLKELDLEHE--KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKT----NPKSHRIDAVFTLFRIAYFH 102 (162)
Q Consensus 29 ~~~l~~Le~~lk--~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~----~s~g~kiD~~l~~iRv~~f~ 102 (162)
++-++-++.-++ ....+ ...+..++..+|..|...|+++.|++.|.+++ +.. ........+..++-.+.+..
T Consensus 132 ~~Ai~~~~~al~~~~~~~~-~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~nlg~~y~~~ 209 (293)
T 3u3w_A 132 EYCILELKKLLNQQLTGID-VYQNLYIENAIANIYAENGYLKKGIDLFEQIL-KQLEALHDNEEFDVKVRYNHAKALYLD 209 (293)
T ss_dssp HHHHHHHHHHHHTCCCCSC-TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 333445555555 12220 22345578999999999999999999999988 421 34556677888888888888
Q ss_pred cCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhh-cHHHHHHHhHhhc
Q psy398 103 GCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIR-QYCRAAELFVDVI 159 (162)
Q Consensus 103 ~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R-~fk~AA~lfld~~ 159 (162)
+++.....++.+|-.+..+ -++......+-...|..+...+ +|.+|-+.|-.++
T Consensus 210 -~~y~~A~~~~~~al~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 210 -SRYEESLYQVNKAIEISCR--INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp -TCHHHHHHHHHHHHHHHHH--TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 9999999999999999766 6676667888888899999999 5799988886654
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0028 Score=47.17 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=83.4
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
-+++..+|..|...|+++.|++.|.++. ... ...+..+.+..+.+.. +++......+.++-.+... .+.+|..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~----~~~~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~~~~-~~~~~~~ 77 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAW-ELH----KDITYLNNRAAAEYEK-GEYETAISTLNDAVEQGRE-MRADYKV 77 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHS----CCTHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH-TTCCHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-Hhh----ccHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCcc-cccchHH
Confidence 4678899999999999999999999988 544 2256778888888888 9999999999999887532 1346665
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
........|..+...++|.+|.+.|-.++.
T Consensus 78 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 78 ISKSFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 567777888889999999999999877653
No 31
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.28 E-value=0.0041 Score=50.19 Aligned_cols=109 Identities=10% Similarity=0.033 Sum_probs=83.5
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC---ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhc
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTN---PKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGI 123 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~---s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~ 123 (162)
...+..++..+|..|...|+++.|++.|.+++ +... .......+...+.++.+.. +++.....++.++-.+...
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~- 295 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERL-RIAREFGDRAAERRANSNLGNSHIFL-GQFEDAAEHYKRTLALAVE- 295 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHH-
Confidence 45566789999999999999999999999987 5433 3333444666777777777 9999999999999988765
Q ss_pred CCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 124 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
-++.......-...|..++..++|.+|.+.|-.++
T Consensus 296 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 296 -LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55554455556667777888899999988886654
No 32
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.0064 Score=41.48 Aligned_cols=95 Identities=12% Similarity=-0.039 Sum_probs=74.0
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
..+..+|.-+.+.|++++|++.|.++. ...... .++.+.+-.+.+.. +++........+|-.+- ..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~----p~~---- 71 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMI-KRAPED---ARGYSNRAAALAKL-MSFPEAIADCNKAIEKD----PNF---- 71 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTC----
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCC---hHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC----CCc----
Confidence 567899999999999999999999988 544332 36677777777778 99999999999887762 122
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
...-...|..++..++|.+|...|-.++
T Consensus 72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 72 VRAYIRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 2344567888889999999999887654
No 33
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.25 E-value=0.0077 Score=48.93 Aligned_cols=110 Identities=9% Similarity=-0.012 Sum_probs=85.8
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC----hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP----KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEG 122 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s----~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~ 122 (162)
..+.-.++..+|..|...|+.+.|++.|.+++ +.... ......+...+-.+.... +++.....+..+|-.+..+
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAY-EIYKEHEAYNIRLLQCHSLFATNFLDL-KQYEDAISHFQKAYSMAEA 216 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTCSTTHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHhCccchHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHH
Confidence 34567889999999999999999999999987 53322 334455555666666666 9999999999999999776
Q ss_pred cCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 123 ISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 123 ~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
.+|.......-..-|..+...++|.+|-+.|-.++.
T Consensus 217 --~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 217 --EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --cCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566655555666678888899999999999887653
No 34
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.21 E-value=0.0049 Score=50.29 Aligned_cols=104 Identities=9% Similarity=-0.036 Sum_probs=82.0
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC---hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch-
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNP---KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW- 128 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s---~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW- 128 (162)
.+.-+|.++...|+++.|++.|.++. ..... .....++...+-.+.... +++.....+..+|-.+..+ -++.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~y~~~-~~~~~A~~~~~~al~~~~~--~~~~~ 178 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAE-KELPFVSDDIEKAEFHFKVAEAYYHM-KQTHVSMYHILQALDIYQN--HPLYS 178 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHT--STTCH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHH-HHHhhCCChHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHh--CCCch
Confidence 46678999999999999999999998 65433 344566666776777777 9999999999999999775 4553
Q ss_pred hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
......-..-|..+...++|.+|.+.|-.++.
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 210 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALE 210 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455556788889999999999999987653
No 35
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.18 E-value=0.011 Score=38.45 Aligned_cols=97 Identities=10% Similarity=-0.040 Sum_probs=73.8
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
..++..+|.-+.+.|+.+.|.+.|.++. ...... .++.+.+..+.+.. +++......+.++-.+.. .+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~--- 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAI-KLDPHN---HVLYSNRSAAYAKK-GDYQKAYEDGCKTVDLKP----DW--- 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCT----TC---
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH-HHCCCc---HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhCc----cc---
Confidence 3567889999999999999999999988 543322 45667777777778 999999999888877621 12
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
.......|..+...++|.+|.+.|-.++.
T Consensus 72 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 72 -GKGYSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 23445667778889999999999877653
No 36
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.17 E-value=0.0065 Score=48.61 Aligned_cols=106 Identities=9% Similarity=0.021 Sum_probs=80.5
Q ss_pred HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCCh---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCC
Q psy398 49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK---SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISG 125 (162)
Q Consensus 49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~---g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~g 125 (162)
..-.++..+|..|.+ |++++|++.|.+++ +..... ....++...+-.+.+.. +++.....+..+|-.+..+ .
T Consensus 114 ~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al-~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~--~ 188 (307)
T 2ifu_A 114 TAAMALDRAGKLMEP-LDLSKAVHLYQQAA-AVFENEERLRQAAELIGKASRLLVRQ-QKFDEAAASLQKEKSMYKE--M 188 (307)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHH-HHHHhCCChhHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH--c
Confidence 456788999999999 99999999999988 543322 23456777777777778 9999999999999988654 4
Q ss_pred CchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 126 GDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 126 gDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+++......-...|+.++..+++.+|...|-.++
T Consensus 189 ~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 189 ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 4433333444556777778899999999887654
No 37
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.15 E-value=0.01 Score=41.37 Aligned_cols=95 Identities=13% Similarity=-0.040 Sum_probs=48.7
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|..|...|+.+.|++.|.++. ...... .+..+.+..+.+.. +++......+.++-.+-. .+...
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~p----~~~~~- 117 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAI-ELDKKY---IKGYYRRAASNMAL-GKFRAALRDYETVVKVKP----HDKDA- 117 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST----TCHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCccc---HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC----CCHHH-
Confidence 345566666666666666666666665 332211 23444444444455 666666666666655421 12221
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVD 157 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld 157 (162)
......+..++..++|.+|.+.+-.
T Consensus 118 -~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 118 -KMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 1112233335556666666666543
No 38
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.15 E-value=0.014 Score=38.41 Aligned_cols=99 Identities=6% Similarity=-0.035 Sum_probs=74.4
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD 127 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD 127 (162)
...-.++..+|..+...|+.+.|++.|.++. ...... .++.+.+.++.+.. +++......+.++-.+-. .+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~ 79 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAI-ELNPAN---AVYFCNRAAAYSKL-GNYAGAVQDCERAICIDP----AY 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHH-HcCCCC---HHHHHHHHHHHHHh-hchHHHHHHHHHHHhcCc----cC
Confidence 3445678889999999999999999999988 543322 45677777777778 999999888888877621 22
Q ss_pred hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.......|..+...++|.+|.+.|-.++
T Consensus 80 ----~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 80 ----SKAYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2344566778888999999999887654
No 39
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.14 E-value=0.025 Score=44.58 Aligned_cols=104 Identities=9% Similarity=-0.093 Sum_probs=79.3
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC---CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc-
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKT---NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD- 127 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~---~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD- 127 (162)
..+..+|.+|...|+++.|++.|.+++ +.. ...-....+...+-.+.... +++.....+..+|-.+.+. -++
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~lg~~y~~~-~~~~~A~~~~~kal~~~~~--~~~~ 191 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLL-NQQLTGIDVYQNLYIENAIANIYAEN-GYLKKGIDLFEQILKQLEA--LHDN 191 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHH-TTCCCSSCTTHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--SCCC
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHhcCCchHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHh--cCcc
Confidence 345678999999999999999999988 543 22334566777777777777 9999999999999988665 333
Q ss_pred hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+......-..-|..+...++|.+|-+.|-.++
T Consensus 192 ~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 192 EEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 22222555577888899999999999987765
No 40
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.12 E-value=0.0059 Score=39.44 Aligned_cols=99 Identities=9% Similarity=-0.048 Sum_probs=74.6
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|..|.+.|+.+.|.+.|.++. ...... .+..+.+-.+.+.. +++......+.++-.+. .+ ...
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~-----~~-~~~ 75 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAI-QLDPEE---SKYWLMKGKALYNL-ERYEEAVDCYNYVINVI-----ED-EYN 75 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHH-HHCCCC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTS-----CC-TTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH-HhCcCC---HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhC-----cc-cch
Confidence 457789999999999999999999988 544332 35667777777777 99999999998887762 12 112
Q ss_pred hHHHHHHHHHHhhh-hcHHHHHHHhHhhccC
Q psy398 132 NKLKAYEGVYCLAI-RQYCRAAELFVDVIRS 161 (162)
Q Consensus 132 nrLKvy~gl~~l~~-R~fk~AA~lfld~~~T 161 (162)
.......|..++.. ++|.+|.+.|-.++.+
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 23445667788889 9999999999887653
No 41
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.12 E-value=0.013 Score=43.34 Aligned_cols=102 Identities=13% Similarity=-0.054 Sum_probs=77.6
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChH-------------HHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKS-------------HRIDAVFTLFRIAYFHGCDIQAMTAAIE 114 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g-------------~kiD~~l~~iRv~~f~~~d~~~v~~~i~ 114 (162)
.+.-..+..+|..|.+.|+++.|++.|.++. ....... ...++.+.+-++.+.. +++.....++.
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~ 112 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEAL-DFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN-KDYPKAIDHAS 112 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 3345678899999999999999999999988 5432211 1246777778888888 99999999999
Q ss_pred HHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 115 KATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 115 ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+|-.+-. .+ .+.-...|..++..++|.+|.+.|-.++
T Consensus 113 ~al~~~p----~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al 149 (198)
T 2fbn_A 113 KVLKIDK----NN----VKALYKLGVANMYFGFLEEAKENLYKAA 149 (198)
T ss_dssp HHHHHST----TC----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCc----cc----HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9887621 12 2344567888889999999999887664
No 42
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.11 E-value=0.0084 Score=42.99 Aligned_cols=99 Identities=12% Similarity=-0.022 Sum_probs=76.4
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD 127 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD 127 (162)
..--..+..+|..|.+.|+++.|++.|.+++ ...... .++.+.+-.+.+.. +++......+.+|-.+-. .+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p----~~ 78 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQAL-SIAPAN---PIYLSNRAAAYSAS-GQHEKAAEDAELATVVDP----KY 78 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCcC---HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC----CC
Confidence 3455678899999999999999999999988 544332 46677777777778 999999999998877631 22
Q ss_pred hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
...-...|..++..++|.+|.+.|-.++
T Consensus 79 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al 106 (164)
T 3sz7_A 79 ----SKAWSRLGLARFDMADYKGAKEAYEKGI 106 (164)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 2334456888888999999999887654
No 43
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.10 E-value=0.012 Score=38.69 Aligned_cols=96 Identities=18% Similarity=0.138 Sum_probs=57.9
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
..++..+|..|.+.|+.+.|.+.|.++. ...... ....+.+..+.+.. +++....+.+.++-.... .+.
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~----~~~-- 103 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPRS---AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDP----RSA-- 103 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHCT----TCH--
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHH-HHCCCc---hHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhCC----CCh--
Confidence 3456667777777777777777777776 433221 23445555555555 777777777766655421 121
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
..-...|..+...+++.+|...|-.++
T Consensus 104 --~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 104 --EAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp --HHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 122234555667788888877776654
No 44
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.09 E-value=0.011 Score=40.38 Aligned_cols=96 Identities=14% Similarity=-0.034 Sum_probs=74.6
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
-..+..+|..|...|+++.|++.|.++. ...... .++.+.+-.+.+.. +++......+.++-.+- ..++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~----p~~~-- 77 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAI-TRNPLV---AVYYTNRALCYLKM-QQPEQALADCRRALELD----GQSV-- 77 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCH--
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHH-hhCcCc---HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC----chhH--
Confidence 3567899999999999999999999988 544332 45677777777778 99999999999887763 1232
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
......|..++..++|.+|-..|-.++
T Consensus 78 --~~~~~l~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 78 --KAHFFLGQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 344567888888999999998887654
No 45
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.01 E-value=0.0087 Score=43.17 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=38.8
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
.+..+|..|.+.||+++|+++|.+++ +.... -.+..+.+..+-+.. +++......+.++...
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al-~~~p~---~~~~~~~la~~~~~~-~~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVL-KADPN---NVETLLKLGKTYMDI-GLPNDAIESLKKFVVL 68 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC---CHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhc
Confidence 46677777777777777777777776 43222 134555555555556 6666666666666543
No 46
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.97 E-value=0.014 Score=46.61 Aligned_cols=115 Identities=11% Similarity=0.020 Sum_probs=81.7
Q ss_pred hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q psy398 41 KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG-CDIQAMTAAIEKATEL 119 (162)
Q Consensus 41 ~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~-~d~~~v~~~i~ka~~l 119 (162)
.+++ .......++..+|..|.+.|++++|+++|.+++ +-....|..-...-...++|..+. +++.....+..+|-.+
T Consensus 67 ~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 67 ANNR-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKAS-VMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHcC-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4444 135667789999999999999999999999987 543333333333444445554442 6888888999999888
Q ss_pred hhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 120 IEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 120 ~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
... .++.......-.--|..++..++|.+|...|-.++
T Consensus 145 ~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 145 FEN--EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHh--CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 765 56654444444455778888999999999887765
No 47
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.94 E-value=0.019 Score=44.00 Aligned_cols=102 Identities=14% Similarity=0.073 Sum_probs=80.1
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
-+++..+|.-+.+.|++++|++.|.++. ..........++.+.+-.+.+.. +++......+.++-.+-- ....
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~~p--~~~~--- 87 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVF-TYGRTHEWAADAQFYLARAYYQN-KEYLLAASEYERFIQIYQ--IDPR--- 87 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHG-GGCSCSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT--TCTT---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCCCcchHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHHCC--CCch---
Confidence 3567899999999999999999999999 66655556678889999999999 999999999999887731 1222
Q ss_pred hhHHHHHHHHHHhh--------hhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLA--------IRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~--------~R~fk~AA~lfld~~ 159 (162)
........|..++. .++|.+|...|-.++
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l 124 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI 124 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence 22334456777777 999999999887654
No 48
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.92 E-value=0.022 Score=37.14 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=71.3
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
-.++..+|..|.+.|+.+.|.+.|.++. ..... ..+..+.+..+.+.. +++......+.++-.... .+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~---~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~----~~--- 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPN---NAEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDP----NN--- 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcC---cHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCC----cc---
Confidence 4567889999999999999999999988 54322 245677777777788 999999888888876521 12
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.......|..+...++|.+|...|-.++
T Consensus 77 -~~~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 77 -AEAWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 1233455677778899999998886654
No 49
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.0028 Score=41.60 Aligned_cols=97 Identities=9% Similarity=-0.104 Sum_probs=70.8
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|..+.+.|++++|++.|.++. ...... .++.+.+-.+-+.. +++......+.+|-.+- |..+++...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~--p~~~~~~~~ 77 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLI-TAQPQN---PVGYSNKAMALIKL-GEYTQAIQMCQQGLRYT--STAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTSC--SSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCC---HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC--CCccHHHHH
Confidence 567889999999999999999999988 543322 35566777777777 99999999999988774 224455544
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHh
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELF 155 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lf 155 (162)
.+.....|..+...+++..|...|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHH
Confidence 555556677777777766554443
No 50
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.83 E-value=0.021 Score=41.88 Aligned_cols=102 Identities=11% Similarity=-0.045 Sum_probs=77.3
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC-----
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG----- 126 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg----- 126 (162)
.++..+|.-|.+.|+.++|++.|.++. ..... -.+..+.+-.+.+.. +++......+.++-.+... ..
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~~~---~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~~~--~~~~~~~ 110 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSI-NRDKH---LAVAYFQRGMLYYQT-EKYDLAIKDLKEALIQLRG--NQLIDYK 110 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTTTT--CSEEECG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcc---chHHHHHHHHHHHHc-ccHHHHHHHHHHHHHhCCC--ccHHHHH
Confidence 588999999999999999999999988 54322 245667777777777 9999999999999887532 22
Q ss_pred -----chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 127 -----DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 127 -----DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
........-...|..+...++|.+|.+.|-.++.
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1111224556778888999999999999877653
No 51
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.82 E-value=0.023 Score=43.60 Aligned_cols=109 Identities=10% Similarity=-0.084 Sum_probs=78.0
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH--------hcCCHHHHHHHHHHHHh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF--------HGCDIQAMTAAIEKATE 118 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f--------~~~d~~~v~~~i~ka~~ 118 (162)
......++..+|.-|.+.|+++.|++.|.+.+ ..........+..+.+-.+-+. . +++......+.++-.
T Consensus 48 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~ 125 (261)
T 3qky_A 48 HEWAADAQFYLARAYYQNKEYLLAASEYERFI-QIYQIDPRVPQAEYERAMCYYKLSPPYELDQ-TDTRKAIEAFQLFID 125 (261)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCC-HHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HHCCCCchhHHHHHHHHHHHHHhcccccccc-hhHHHHHHHHHHHHH
Confidence 33446788999999999999999999999998 5544344556777777777666 6 788888888877766
Q ss_pred hhhhcCCCc-hhhhhHHH----------HHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 119 LIEGISGGD-WSARNKLK----------AYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 119 l~e~~~ggD-W~rrnrLK----------vy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.- |.... +....++. ...|..++..++|.+|...|-.++
T Consensus 126 ~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 126 RY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 52 11221 22222221 566888999999999999987654
No 52
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.81 E-value=0.034 Score=44.02 Aligned_cols=108 Identities=16% Similarity=0.079 Sum_probs=77.2
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHH---HHHHHHHHHHH-hcCCHHHHHHHHHHHHhhhhhc
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRID---AVFTLFRIAYF-HGCDIQAMTAAIEKATELIEGI 123 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD---~~l~~iRv~~f-~~~d~~~v~~~i~ka~~l~e~~ 123 (162)
...-.++..+|..|.+.|+.++|+.+|.+++ +.....|.... ....+-.+... . +++.....+..+|-.+...
T Consensus 74 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~l~~~~g~~~~~a~~~~~lg~~~~~~l-g~~~~A~~~~~~Al~~~~~- 150 (292)
T 1qqe_A 74 DEAGNTYVEAYKCFKSGGNSVNAVDSLENAI-QIFTHRGQFRRGANFKFELGEILENDL-HDYAKAIDCYELAGEWYAQ- 150 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHh-
Confidence 4556789999999999999999999999988 64444444333 33333333333 4 7899999999999888654
Q ss_pred CCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 124 SGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 124 ~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.++.......-.--|..++..++|.+|...|-.++
T Consensus 151 -~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 185 (292)
T 1qqe_A 151 -DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLI 185 (292)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44433333333445788889999999999987655
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.77 E-value=0.028 Score=40.66 Aligned_cols=97 Identities=11% Similarity=-0.074 Sum_probs=72.0
Q ss_pred HHHHhhHhHHHhh-cCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 52 GIWQAKLDYLCSI-GDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 52 ~~~~~~a~~~~~i-GD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
.++..+|..|... |+.+.|.+.|.++. . ........++.+.+.++.+.. +++......+.++-.... .+
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~----~~--- 146 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKAL-A-DPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKRSLAAQP----QF--- 146 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHH-T-STTCSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST----TC---
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHH-c-CcCCcchHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC----CC---
Confidence 4677899999999 99999999999999 6 222233456778888888888 999999888888876532 12
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.......|..++..++|.+|.+.|-.++
T Consensus 147 -~~~~~~la~~~~~~~~~~~A~~~~~~~~ 174 (225)
T 2vq2_A 147 -PPAFKELARTKMLAGQLGDADYYFKKYQ 174 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2234455667778899999988876654
No 54
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.74 E-value=0.033 Score=38.80 Aligned_cols=96 Identities=9% Similarity=-0.032 Sum_probs=68.5
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
..++..+|..|...|+.+.|.+.|.++. ...... .++.+.+.++.+.. +++......+.++-.... .+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~--- 109 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSL-ADAPDN---VKVATVLGLTYVQV-QKYDLAVPLLIKVAEANP----IN--- 109 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCT----TC---
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCC---HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCc----Hh---
Confidence 4567788888888888888888888877 543322 35566777777777 888888888888776632 12
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.......|..+...++|.+|.+.|-.++
T Consensus 110 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 110 -FNVRFRLGVALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 1233456777778889999988887654
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.72 E-value=0.022 Score=43.03 Aligned_cols=98 Identities=13% Similarity=0.067 Sum_probs=72.1
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
++..+|..|.+.|+.+.|++.|.++. .............+.+-.+.... +++....+++.++-.+-. .+.
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~a~~~~~----~~~---- 108 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYF-SKVNATKAKSADFEYYGKILMKK-GQDSLAIQQYQAAVDRDT----TRL---- 108 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHH-TTSCTTTCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST----TCT----
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-hccCchhHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHhcCc----ccH----
Confidence 67788889999999999999999988 64444444455567777777777 899888888888877632 122
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 133 KLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 133 rLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
......|..+...++|.+|.+.|-.++.
T Consensus 109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 2344567777788889988888877653
No 56
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.67 E-value=0.036 Score=38.56 Aligned_cols=96 Identities=9% Similarity=-0.085 Sum_probs=72.4
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
..++..+|..|...|+.++|.+.|.++. ...... ..+.+.+.++.+.. +++......+.++-.... .+
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~--- 143 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVA-EANPIN---FNVRFRLGVALDNL-GRFDEAIDSFKIALGLRP----NE--- 143 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCcHh---HHHHHHHHHHHHHc-CcHHHHHHHHHHHHhcCc----cc---
Confidence 5678889999999999999999999988 543332 35667777777777 999998888888876632 12
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.......|..+...+++.+|.+.|-.++
T Consensus 144 -~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 144 -GKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2344566777788899999999886654
No 57
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.67 E-value=0.037 Score=39.71 Aligned_cols=98 Identities=10% Similarity=-0.138 Sum_probs=72.3
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG 126 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg 126 (162)
..+--.++..+|..|.+.|+++.|++.|.+++ ...... .+..+.+-.+.... +++........+|-.+- ..
T Consensus 27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~-~~~~~A~~~~~~al~~~----p~ 97 (150)
T 4ga2_A 27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI-NVQERD---PKAHRFLGLLYELE-ENTDKAVECYRRSVELN----PT 97 (150)
T ss_dssp HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TT
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CchHHHHHHHHHHHHhC----CC
Confidence 34445678899999999999999999999988 543221 45666777777777 99999999999888762 23
Q ss_pred chhhhhHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398 127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVD 157 (162)
Q Consensus 127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld 157 (162)
+++-. ..-|..++..+++.+|++.|++
T Consensus 98 ~~~~~----~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 98 QKDLV----LKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp CHHHH----HHHHHHHHHHCSSSSHHHHHHH
T ss_pred CHHHH----HHHHHHHHHcCChHHHHHHHHH
Confidence 44322 2346667778899999988875
No 58
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.64 E-value=0.044 Score=42.10 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=72.8
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch---h
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW---S 129 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW---~ 129 (162)
++..+|..|...|+.+.|.+.|.++. ...... ..+...+.++.+.. +++......+.++-.+... .++. .
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~--~~~~~~~~ 233 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQAL-SIAPED---PFVMHEVGVVAFQN-GEWKTAEKWFLDALEKIKA--IGNEVTVD 233 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTT--TSCSCTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH-HhCCCC---hHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHhhh--cccccccc
Confidence 45568999999999999999999988 554332 35677777888888 9999999999999887643 2221 1
Q ss_pred hhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 130 ARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 130 rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.....-...|..+...++|.+|.+.|-.++
T Consensus 234 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 234 KWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp TCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 123445566777777888888888776654
No 59
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.61 E-value=0.047 Score=40.76 Aligned_cols=97 Identities=11% Similarity=0.003 Sum_probs=63.7
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|..|...|+.++|.+.|.++. . .........+.+.+.++.+.. +++......+.++-.+.. .+
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~----~~---- 174 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEAS-Q-DTLYPERSRVFENLGLVSLQM-KKPAQAKEYFEKSLRLNR----NQ---- 174 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-T-CTTCTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCS----CC----
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH-h-CccCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCc----cc----
Confidence 456778888888888888888888888 5 111223455666677777777 888888777777766521 12
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.......|..++..+++.+|...|-.++
T Consensus 175 ~~~~~~la~~~~~~g~~~~A~~~~~~~~ 202 (252)
T 2ho1_A 175 PSVALEMADLLYKEREYVPARQYYDLFA 202 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2233445556666777777777776554
No 60
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.58 E-value=0.19 Score=39.40 Aligned_cols=110 Identities=10% Similarity=0.048 Sum_probs=77.9
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhhhcC
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKATELIEGIS 124 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka~~l~e~~~ 124 (162)
+.+......+.+..+.+.|+++.|.+.|.+.. +..........+......+|.++. +++.....++.+|-.+...
T Consensus 71 ~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-- 147 (293)
T 3u3w_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNEL-KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-- 147 (293)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC--
T ss_pred cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHh-ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc--
Confidence 45666667778999999999999999999999 654433332222222222444432 5889999999999886544
Q ss_pred CCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 125 GGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 125 ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.+||......-..-|..+...++|.+|-..|-.++
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp CSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 67776544445566777888999999999988776
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.58 E-value=0.039 Score=41.15 Aligned_cols=100 Identities=13% Similarity=-0.061 Sum_probs=77.4
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh--
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS-- 129 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~-- 129 (162)
.++..+|.-|.+.|+.++|++.|.++. ..... -.++.+.+-.+-... +++......+.++-.+-. .+..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~p----~~~~~~ 113 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAI-KKNYN---LANAYIGKSAAYRDM-KNNQEYIATLTEGIKAVP----GNATIE 113 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HTTCS---HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST----TCHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHH-HhCcc---hHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHCC----CcHHHH
Confidence 456669999999999999999999998 54433 456677777788888 999999999999887632 2322
Q ss_pred -hhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 130 -ARNKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 130 -rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
.....-...|..++..++|.+|.+.|-.++.
T Consensus 114 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 114 KLYAIYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 2223455678888999999999999987764
No 62
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.55 E-value=0.039 Score=39.67 Aligned_cols=97 Identities=5% Similarity=-0.177 Sum_probs=72.7
Q ss_pred HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh
Q psy398 50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS 129 (162)
Q Consensus 50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~ 129 (162)
--.++..+|..|.+.|++++|++.|.++. ...... .+..+.+-.+.... +++....+...+|-.+- ..++.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~----p~~~~ 90 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALC-VLDHYD---SRFFLGLGACRQAM-GQYDLAIHSYSYGAVMD----IXEPR 90 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS----TTCTH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHH-HcCccc---HHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcC----CCCch
Confidence 35567889999999999999999999987 433322 34556666666777 99999999999887763 22332
Q ss_pred hhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 130 ARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 130 rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.-.+.|..++..++|.+|.+.|-.++
T Consensus 91 ----~~~~lg~~~~~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 91 ----FPFHAAECLLQXGELAEAESGLFLAQ 116 (148)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33566888999999999999887654
No 63
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.51 E-value=0.039 Score=40.78 Aligned_cols=98 Identities=11% Similarity=-0.030 Sum_probs=76.0
Q ss_pred HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch
Q psy398 49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW 128 (162)
Q Consensus 49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW 128 (162)
..-.++..+|..|.+.|+.+.|++.|.++. ...... .++.+.+.++.+.. +++......+.++-.+-. .+
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~al~~~~----~~- 206 (258)
T 3uq3_A 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMI-KRAPED---ARGYSNRAAALAKL-MSFPEAIADCNKAIEKDP----NF- 206 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC-
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCccc---HHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhCH----HH-
Confidence 345678899999999999999999999998 544332 36777777888888 999999999999876531 12
Q ss_pred hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
...-...|..+...+++.+|.+.|-.++
T Consensus 207 ---~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 207 ---VRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2344567888889999999998887654
No 64
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.50 E-value=0.049 Score=35.59 Aligned_cols=94 Identities=18% Similarity=0.127 Sum_probs=69.2
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|..|.+.|+.+.|.+.|.++. ...... ....+.+.++.+.. +++......+.++-..-. .+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~~--- 69 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPRS---AEAWYNLGNAYYKQ-GDYDEAIEYYQKALELDP----RSA--- 69 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCT----TCH---
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHH-HcCCcc---hhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHCC----Cch---
Confidence 467789999999999999999999988 543322 35666777777788 999999999998877532 222
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDV 158 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~ 158 (162)
..-...|..+...+++.+|.+.|-.+
T Consensus 70 -~~~~~l~~~~~~~~~~~~A~~~~~~~ 95 (136)
T 2fo7_A 70 -EAWYNLGNAYYKQGDYDEAIEYYQKA 95 (136)
T ss_dssp -HHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 22234566777889999998887553
No 65
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.47 E-value=0.048 Score=42.15 Aligned_cols=96 Identities=15% Similarity=0.042 Sum_probs=75.7
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
+.+..+|..|.+.|+++.|++.|.++. ...... .+..+.+..+.+.. +++......+.++-.+.. .+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l-~~~p~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~~--- 71 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAV-DGDPDN---YIAYYRRATVFLAM-GKSKAALPDLTKVIALKM----DFT--- 71 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHCT----TCH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCccc---HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC----Ccc---
Confidence 467889999999999999999999998 544332 46777888888888 999999999998877631 121
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
......|..++..++|.+|...|-.++.
T Consensus 72 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 72 -AARLQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 3456678888889999999999877654
No 66
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.47 E-value=0.023 Score=42.89 Aligned_cols=97 Identities=14% Similarity=-0.008 Sum_probs=74.1
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
.+..+|..|.+.|+.+.|++.|.++. +..... .+..+.+..+.+.. +++......+.++-.. +.+.+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~p~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~-----~~~~~~~~ 74 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLE-AKKYNS---PYIYNRRAVCYYEL-AKYDLAQKDIETYFSK-----VNATKAKS 74 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHH-HTTCCC---STTHHHHHHHHHHT-TCHHHHHHHHHHHHTT-----SCTTTCCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHH-hhHHHHHHHHHHHHhc-----cCchhHHH
Confidence 46689999999999999999999988 543322 23566666777777 9999999999888773 23333344
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 133 KLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 133 rLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
..-...|..++..++|.+|.+.|-.++
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~ 101 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAV 101 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 455678888999999999999987664
No 67
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.40 E-value=0.035 Score=45.66 Aligned_cols=107 Identities=12% Similarity=0.031 Sum_probs=68.9
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC---C---hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcC
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTN---P---KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGIS 124 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~---s---~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ 124 (162)
-..+..+|.-|..-|+.++|++.|.++. +-.. + -...+....++-.+.... +++.....++.+|..+.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl-~~~~~~~~~~~~~~~~~~~~nla~~y~~~-g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAE-ELIQQEHADQAEIRSLVTWGNYAWVYYHM-GRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHSGGGCTTTTHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHhcCccccchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHhHhcc
Confidence 3457789999999999999999999986 4210 0 011122333445555667 999999999999998865422
Q ss_pred CCchhhhhHHHHHHHHHH--hhhhcHHHHHHHhHhhc
Q psy398 125 GGDWSARNKLKAYEGVYC--LAIRQYCRAAELFVDVI 159 (162)
Q Consensus 125 ggDW~rrnrLKvy~gl~~--l~~R~fk~AA~lfld~~ 159 (162)
+..-......-.-.|..+ +..++|.+|-++|-.++
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal 165 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 211111222333345444 44678999999987654
No 68
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.39 E-value=0.052 Score=39.19 Aligned_cols=27 Identities=7% Similarity=0.062 Sum_probs=14.7
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKF 78 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~ 78 (162)
.++..+|..|...|+.+.|.+.|.++.
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~ 69 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQAL 69 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 345555555555555555555555554
No 69
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.38 E-value=0.029 Score=44.43 Aligned_cols=108 Identities=8% Similarity=-0.001 Sum_probs=76.1
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHH---HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcC
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSH---RIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGIS 124 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~---kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ 124 (162)
++....+...|..|...|++++|+++|.++. +-....|. .......+-.+.... +++.....+..+|-.+...
T Consensus 34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~-g~~~~A~~~~~~Al~l~~~-- 109 (292)
T 1qqe_A 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAA-DYQKKAGNEDEAGNTYVEAYKCFKSG-GNSVNAVDSLENAIQIFTH-- 109 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHH--
Confidence 3444556677889999999999999999987 54322222 344555555555566 8999999999999998655
Q ss_pred CCchhhhhHHHHHHHHHHhhh-hcHHHHHHHhHhhc
Q psy398 125 GGDWSARNKLKAYEGVYCLAI-RQYCRAAELFVDVI 159 (162)
Q Consensus 125 ggDW~rrnrLKvy~gl~~l~~-R~fk~AA~lfld~~ 159 (162)
-|++..-...-.--|..+... ++|.+|...|-.++
T Consensus 110 ~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al 145 (292)
T 1qqe_A 110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 677654444444455566665 89999988887654
No 70
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.37 E-value=0.032 Score=40.03 Aligned_cols=95 Identities=16% Similarity=0.162 Sum_probs=69.7
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHH-HHHhcCCH--HHHHHHHHHHHhhhhhcCCCch
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRI-AYFHGCDI--QAMTAAIEKATELIEGISGGDW 128 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv-~~f~~~d~--~~v~~~i~ka~~l~e~~~ggDW 128 (162)
.++..+|..|...|+.+.|+++|.++. ...... .++.+.+..+ .+.. +++ ......+.++-.+- ..+.
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~la~~l~~~~-~~~~~~~A~~~~~~al~~~----p~~~ 115 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQAL-QLRGEN---AELYAALATVLYYQA-SQHMTAQTRAMIDKALALD----SNEI 115 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHCSC---HHHHHHHHHHHHHHT-TTCCCHHHHHHHHHHHHHC----TTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCC---HHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhC----CCcH
Confidence 478899999999999999999999988 433222 3456666666 4556 777 88888888877652 1232
Q ss_pred hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
......|..++..++|.+|...|-.++
T Consensus 116 ----~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 116 ----TALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 334456788888999999999987655
No 71
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.36 E-value=0.057 Score=44.12 Aligned_cols=100 Identities=18% Similarity=0.089 Sum_probs=69.4
Q ss_pred HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCCh------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy398 50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK------------SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKAT 117 (162)
Q Consensus 50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~------------g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~ 117 (162)
.-.++..+|..|.+.|+++.|+++|.+++ ...... .....+.+++-.+.+.. +++.....+..+|-
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~al 223 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIV-SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL-QAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 34567788888888888888888888877 443332 22356777777777777 88888888888887
Q ss_pred hhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 118 ELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 118 ~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.+-. .+ .+.-...|..++..++|.+|...|-.++
T Consensus 224 ~~~p----~~----~~a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 224 ELDS----NN----EKGLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp HHCT----TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCC----Cc----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7621 12 2233455777778888888888776554
No 72
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.35 E-value=0.12 Score=38.66 Aligned_cols=62 Identities=13% Similarity=0.024 Sum_probs=30.9
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
++..+|..|.+.|+.+.|++.|.++. ...... .+..+.+..+-+.. +++......+.++-.+
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~~la~~~~~~-g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVL-ELDPTY---NYAHLNRGIALYYG-GRDKLAQDDLLAFYQD 140 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---THHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH-hcCccc---cHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh
Confidence 44555555555555555555555555 322111 23444444444444 5555555555555443
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.35 E-value=0.091 Score=42.02 Aligned_cols=104 Identities=14% Similarity=0.058 Sum_probs=81.8
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCCh--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK--SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS 129 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~--g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~ 129 (162)
..+.-+|..+...||.+.|...+.+++ ...... .....+.+.+-.+.+.. +++......+.+|-.+... .|++.
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~~--~~~~~ 90 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLAL-EELPPGWFYSRIVATSVLGEVLHCK-GELTRSLALMQQTEQMARQ--HDVWH 90 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCCTTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHH--TTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHHHh--cCcHH
Confidence 456778889999999999999999988 543222 23445566666777777 9999999999999998766 67766
Q ss_pred hhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 130 ARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 130 rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.........|..++..++|.+|...|-.++
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al 120 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAF 120 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666778999999999999999887664
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.34 E-value=0.06 Score=40.08 Aligned_cols=96 Identities=8% Similarity=-0.077 Sum_probs=73.2
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|..|.+.|+++.|++.|.++. +....... ...+.+-.+.+.. +++.....++.+|-.+- .+ .
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al-~~~~~~~~--~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~-----p~---~ 75 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYL-KLTNNQDS--VTAYNCGVCADNI-KKYKEAADYFDIAIKKN-----YN---L 75 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTCCH--HHHHHHHHHHHHT-TCHHHHHHHHHHHHHTT-----CS---H
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH-hccCCCCc--HHHHHHHHHHHHh-hcHHHHHHHHHHHHHhC-----cc---h
Confidence 578899999999999999999999988 54431111 4566666677777 99999999999887652 22 2
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.......|..+...++|.+|-+.|-.++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al 103 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEGI 103 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3344567888889999999999887665
No 75
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.33 E-value=0.067 Score=37.46 Aligned_cols=96 Identities=8% Similarity=-0.164 Sum_probs=69.6
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
-.++..+|..+.+.|++++|.+.|.++. ...... .+..+.+-.+.... +++........+|-.+- ..++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~----p~~~~- 87 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALC-MLDHYD---ARYFLGLGACRQSL-GLYEQALQSYSYGALMD----INEPR- 87 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCTH-
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHH-HhCCcc---HHHHHHHHHHHHHH-hhHHHHHHHHHHHHhcC----CCCcH-
Confidence 4567788999999999999999999987 433221 34555666666667 89988888888887763 12332
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.-...|..++..++|.+|.+.|-.++
T Consensus 88 ---~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 88 ---FPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567888888999999988886543
No 76
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.32 E-value=0.11 Score=40.04 Aligned_cols=98 Identities=14% Similarity=0.021 Sum_probs=68.5
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHH------------HHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTL------------FRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~------------iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
.++..+|..|...|+.+.|.+.|.++. ....+.+...+....+ .++.+.. +++......+.++-..
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~ 149 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVL-KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDG-ADYTAAITFLDKILEV 149 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHH-hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh
Confidence 678899999999999999999999999 6666444444554444 4666666 8888888888887665
Q ss_pred hhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 120 IEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 120 ~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.. .+. ......|..++..++|.+|...|-.++
T Consensus 150 ~~----~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~ 181 (359)
T 3ieg_A 150 CV----WDA----ELRELRAECFIKEGEPRKAISDLKAAS 181 (359)
T ss_dssp CT----TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CC----Cch----HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 21 121 233445666667777777777766544
No 77
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.30 E-value=0.047 Score=40.20 Aligned_cols=94 Identities=14% Similarity=0.016 Sum_probs=58.2
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|..|...|+.+.|.+.|.++. ...... .++.+.+..+.+.. +++......+.++-.... .+.
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~~~----~~~--- 159 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKAL-RAGMEN---GDLFYMLGTVLVKL-EQPKLALPYLQRAVELNE----NDT--- 159 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTCCS---HHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHCT----TCH---
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCC----ccH---
Confidence 456677777888888888888888776 433222 34556666666666 777777777777665521 121
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDV 158 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~ 158 (162)
......|..++..++|.+|...|-.+
T Consensus 160 -~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 160 -EARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp -HHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 13334555566666777666666544
No 78
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.30 E-value=0.054 Score=40.43 Aligned_cols=98 Identities=10% Similarity=0.012 Sum_probs=69.9
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
..++..+|..|.+.|+.++|.+.|.++. ...... .++.+.+..+.+.. +++......+.++-.. +.+ ..
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~-----~~~-~~ 139 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKAL-ASDSRN---ARVLNNYGGFLYEQ-KRYEEAYQRLLEASQD-----TLY-PE 139 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHTTC-----TTC-TT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCcCc---HHHHHHHHHHHHHH-hHHHHHHHHHHHHHhC-----ccC-cc
Confidence 3567788999999999999999999987 543322 45667777777777 8988888888887651 111 11
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
........|..++..++|.+|.+.|-.++
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23344456777788899999998887654
No 79
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.24 E-value=0.068 Score=39.29 Aligned_cols=96 Identities=13% Similarity=0.038 Sum_probs=74.4
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
..++..+|..|...|+.+.|++.|.++. +.... ..++.+.+.++.+.. +++......+.++-.+... +.
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~---~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~~~~----~~-- 125 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKAL-ELDSS---AATAYYGAGNVYVVK-EMYKEAKDMFEKALRAGME----NG-- 125 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCC----SH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCc---chHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCC----CH--
Confidence 4577889999999999999999999988 54332 246677778888888 9999999999998876421 22
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
......|..++..++|.+|-+.|-.++
T Consensus 126 --~~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 126 --DLFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp --HHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 234456777888999999999887654
No 80
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.17 E-value=0.076 Score=38.76 Aligned_cols=92 Identities=9% Similarity=-0.048 Sum_probs=72.0
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
.+..+|..|.+.|+++.|++.|.++. +.. .++.+.+..+.+.. +++.....+..+|-.+-. .+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~----~~~---- 71 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DPH------SRICFNIGCMYTIL-KNMTEAEKAFTRSINRDK----HLA---- 71 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SCC------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCH----
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CCC------hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCc----cch----
Confidence 46789999999999999999999998 551 35777777777778 999999999998877631 222
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 133 KLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 133 rLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
..-...|..++..++|.+|.+.|-.++.
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2334567888889999999999876653
No 81
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.1 Score=42.83 Aligned_cols=99 Identities=12% Similarity=-0.038 Sum_probs=76.8
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG 126 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg 126 (162)
+.+--+++..+|..|.+.|+++.|++.|.++. ..... ....+.+.++.+.. +++......+.++-.+- ..
T Consensus 2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~----~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~----p~ 71 (514)
T 2gw1_A 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWAL-ELKED----PVFYSNLSACYVSV-GDLKKVVEMSTKALELK----PD 71 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-HHCCC----HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC----SC
T ss_pred cchhHHHHHHHHHHHHHhccHHHHHHHHHHHH-hcCcc----HHHHHhHHHHHHHH-hhHHHHHHHHHHHhccC----hH
Confidence 45566789999999999999999999999998 54432 56777788888888 99999999999887752 12
Q ss_pred chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+. ..-...|..++..++|.+|-..|-.++
T Consensus 72 ~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 72 YS----KVLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22 233456777888999999998886553
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.14 E-value=0.26 Score=39.30 Aligned_cols=107 Identities=11% Similarity=0.092 Sum_probs=76.8
Q ss_pred HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC--hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398 49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP--KSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG 126 (162)
Q Consensus 49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s--~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg 126 (162)
....++..+|..|...|+.++|.+.|.+++ +-+.. ..+.+.....+-++.... +++......+.++..+... .+
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~l~~a~~~~~~--~~ 208 (373)
T 1hz4_A 133 MHEFLVRIRAQLLWAWARLDEAEASARSGI-EVLSSYQPQQQLQCLAMLIQCSLAR-GDLDNARSQLNRLENLLGN--GK 208 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTTSCGGGGHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHTT--SC
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHhhccCcHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhc--cC
Confidence 456678889999999999999999999987 54433 333556777888888999 9999999999999988654 23
Q ss_pred c-hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 127 D-WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 127 D-W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+ ...........+...+..+++.+|...+-.++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 209 YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 2 11111111123344667899999888876654
No 83
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.10 E-value=0.054 Score=46.33 Aligned_cols=101 Identities=16% Similarity=0.043 Sum_probs=75.2
Q ss_pred HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCCh------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy398 49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK------------SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKA 116 (162)
Q Consensus 49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~------------g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka 116 (162)
+.-.++..+|..|.+.|+++.|++.|.+++ ...... ..+..+.+++-.+.+.. +++.....+..+|
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~a 343 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIV-SWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL-REYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHH
Confidence 345578889999999999999999999988 533221 23466777777777778 9999999999888
Q ss_pred HhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 117 TELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 117 ~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
-.+-. .+ .+.-...|..++..++|.+|...|-.++
T Consensus 344 l~~~p----~~----~~a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 344 LGLDS----AN----EKGLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHHST----TC----HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCC----cc----HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 77631 12 2334456788888899999998887665
No 84
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=96.10 E-value=0.12 Score=39.64 Aligned_cols=95 Identities=16% Similarity=0.071 Sum_probs=65.8
Q ss_pred HHHHhhHhHHHhhc-CHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 52 GIWQAKLDYLCSIG-DRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 52 ~~~~~~a~~~~~iG-D~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
.++..+|..|...| +.+.|.+.|.++. ...... .+..+.+.++.+.. +++......+.++-.+... +
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~----~--- 158 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKAT-TLEKTY---GPAWIAYGHSFAVE-SEHDQAMAAYFTAAQLMKG----C--- 158 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHH-TTCTTC---THHHHHHHHHHHHH-TCHHHHHHHHHHHHHHTTT----C---
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH-HhCCcc---HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhccc----c---
Confidence 45778888999999 8999999999888 544322 34566777777777 8888888888888776321 1
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.....+.|..++..++|.+|.+.|-.++
T Consensus 159 -~~~~~~l~~~~~~~~~~~~A~~~~~~al 186 (330)
T 3hym_B 159 -HLPMLYIGLEYGLTNNSKLAERFFSQAL 186 (330)
T ss_dssp -SHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1223346666777777777777776554
No 85
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.09 E-value=0.053 Score=36.73 Aligned_cols=68 Identities=6% Similarity=-0.038 Sum_probs=47.2
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
+..--.++..+|.-|.+.|++++|++.|.+++ ...... .++.+.+-.+-+.. +++......+.++-..
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGV-KQFPNH---QALRVFYAMVLYNL-GRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCc---hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 55666778888888888888888888888877 433222 45556666666666 7777777777777655
No 86
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.09 E-value=0.081 Score=38.87 Aligned_cols=98 Identities=17% Similarity=0.019 Sum_probs=75.5
Q ss_pred HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch
Q psy398 49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW 128 (162)
Q Consensus 49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW 128 (162)
+--+++..+|.-|.+.|++++|++.|.++. ...... .+..+.+-.+.... +++........+|-.+- ..++
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al-~~~P~~---~~~~~~lg~~~~~~-g~~~~Ai~~~~~al~l~----P~~~ 104 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLC-IYDFYN---VDYIMGLAAIYQIK-EQFQQAADLYAVAFALG----KNDY 104 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS----SSCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHH-ccHHHHHHHHHHHHhhC----CCCc
Confidence 345689999999999999999999999988 443321 34556666666677 99999999999998873 2233
Q ss_pred hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 129 SARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 129 ~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+ .....|..++..++|.+|...|-.++
T Consensus 105 ~----~~~~lg~~~~~lg~~~eA~~~~~~al 131 (151)
T 3gyz_A 105 T----PVFHTGQCQLRLKAPLKAKECFELVI 131 (151)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 34467888999999999999987654
No 87
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.07 E-value=0.15 Score=35.18 Aligned_cols=95 Identities=9% Similarity=-0.093 Sum_probs=72.7
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD 127 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD 127 (162)
.+.-.++..+|..|...|+++.|.+.|.++. ...... .++.+.+..+.+.. +++......+.++-.+-. .+
T Consensus 10 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~a~~~~~----~~ 80 (166)
T 1a17_A 10 LKRAEELKTQANDYFKAKDYENAIKFYSQAI-ELNPSN---AIYYGNRSLAYLRT-ECYGYALGDATRAIELDK----KY 80 (166)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCC---hHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCc----cc
Confidence 4455678999999999999999999999988 543322 56677777777788 999999999999888632 22
Q ss_pred hhhhhHHHHHHHHHHhhhhcHHHHHHHh
Q psy398 128 WSARNKLKAYEGVYCLAIRQYCRAAELF 155 (162)
Q Consensus 128 W~rrnrLKvy~gl~~l~~R~fk~AA~lf 155 (162)
. ..-...|..+...++|.+|.+.|
T Consensus 81 ~----~~~~~~a~~~~~~~~~~~A~~~~ 104 (166)
T 1a17_A 81 I----KGYYRRAASNMALGKFRAALRDY 104 (166)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred H----HHHHHHHHHHHHhccHHHHHHHH
Confidence 2 23445677788889999988766
No 88
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=95.98 E-value=0.13 Score=36.85 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=29.7
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
++..+|.-|.+.|+.+.|++.+.++. ...... .+.....-.+.... +++......+.+|-.+
T Consensus 41 ~~~~la~~~~~~~~~~~a~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~-~~~~~a~~~~~~a~~~ 102 (184)
T 3vtx_A 41 TLLKLGKTYMDIGLPNDAIESLKKFV-VLDTTS---AEAYYILGSANFMI-DEKQAAIDALQRAIAL 102 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCCC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-hcCchh---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 45556666666666666666666655 322221 12222233333334 5555555555555443
No 89
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.96 E-value=0.28 Score=36.94 Aligned_cols=111 Identities=11% Similarity=-0.006 Sum_probs=63.4
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHH
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG--------------CDIQAMTAAI 113 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~--------------~d~~~v~~~i 113 (162)
.....++..+|.-|.+.|+.++|++.|.+.. .........-+..+.+-.+-+..+ .+.....+.+
T Consensus 38 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l-~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 116 (225)
T 2yhc_A 38 PYSQQVQLDLIYAYYKNADLPLAQAAIDRFI-RLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAF 116 (225)
T ss_dssp TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHH
Confidence 3345788999999999999999999999988 433332222223333222222110 1222333333
Q ss_pred HHHHhhhhh-cCCC-chhhhhHH----------HHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 114 EKATELIEG-ISGG-DWSARNKL----------KAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 114 ~ka~~l~e~-~~gg-DW~rrnrL----------Kvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.--+.+++. |... -|+.+.++ ....|..++..++|.+|...|-.++
T Consensus 117 ~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l 174 (225)
T 2yhc_A 117 SDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGML 174 (225)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 333444443 2121 12222222 1456888899999999998887654
No 90
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.89 E-value=0.17 Score=34.95 Aligned_cols=95 Identities=14% Similarity=-0.101 Sum_probs=71.3
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
.+..+|.-+.+.|+.+.|+++|.++. ...... .+..+.+-++.+.. +++......+.+|-.+- ..+.+
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~~P~~---~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~----P~~~~--- 86 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVC-QKEPER---EEAWRSLGLTQAEN-EKDGLAIIALNHARMLD----PKDIA--- 86 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHH---
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCCHH---
Confidence 46778999999999999999999988 433221 35556666666677 99999999999887762 12222
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 133 KLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 133 rLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
.....|..+...++|.+|...|-.++.
T Consensus 87 -~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 87 -VHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345678888899999999999877653
No 91
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.88 E-value=0.15 Score=41.31 Aligned_cols=102 Identities=7% Similarity=-0.065 Sum_probs=62.9
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHhhhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDA---------VFTLFRIAYFHGCDIQAMTAAIEKATELIEG 122 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~---------~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~ 122 (162)
.++..+|..|.+.|+.+.|++.|.++. ............ .+.+..+.+.. +++......+.++-.+.
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~A~~~~~~~l~~~-- 287 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECL-KLDQDHKRCFAHYKQVKKLNKLIESAEELIRD-GRYTDATSKYESVMKTE-- 287 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC--
Confidence 456778888888888888888888877 443333222221 23345666666 78888777777776642
Q ss_pred cCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 123 ISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 123 ~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
..+......+-...|..+...++|.+|-..|-.++
T Consensus 288 --p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 288 --PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp --CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred --CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 12322223344455666666777777777765543
No 92
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.86 E-value=0.074 Score=44.48 Aligned_cols=100 Identities=11% Similarity=-0.009 Sum_probs=67.9
Q ss_pred HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC-------------ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy398 50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTN-------------PKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKA 116 (162)
Q Consensus 50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~-------------s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka 116 (162)
.-..+..+|..|.+.|+++.|++.|.+++ .... -......+.+++-.+.+.. +++.....+..+|
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl-~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~-g~~~~A~~~~~~a 299 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVL-RYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM-SDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHH
Confidence 34457788888888888888888888887 4221 1234456666777777777 8888888887777
Q ss_pred HhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 117 TELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 117 ~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
-.+- .+ ..+.-...|..++..++|.+|.+.|-.++
T Consensus 300 l~~~-----p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 300 LEID-----PS---NTKALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp HTTC-----TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhC-----ch---hHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 6651 22 12334456777777888888888776554
No 93
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.81 E-value=0.12 Score=40.62 Aligned_cols=96 Identities=15% Similarity=0.073 Sum_probs=73.2
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
..++..+|..|.+.|+.++|++.|.++. ...... .++...+.++.... +++......+.++-.+-. .+.
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~----~~~-- 285 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAAL-SVRPND---YLLWNKLGATLANG-NQSEEAVAAYRRALELQP----GYI-- 285 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC----CcH--
Confidence 3567789999999999999999999988 543322 35677777788888 999999999999877621 222
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.....-|..++..++|.+|...|-.++
T Consensus 286 --~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 286 --RSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 234456777788999999999887654
No 94
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.75 E-value=0.12 Score=41.95 Aligned_cols=97 Identities=14% Similarity=0.058 Sum_probs=74.5
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
-.++..+|..|.+.|+.+.|++.|.++. +..... .+..+.+..+.+.. +++......+.++-.+-. .+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l-~~~p~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p----~~--- 93 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAV-DGDPDN---YIAYYRRATVFLAM-GKSKAALPDLTKVIQLKM----DF--- 93 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCcc---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC----Cc---
Confidence 4568889999999999999999999988 543332 66777788888888 999999999988877621 12
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
.......|..++..++|.+|.+.|-.++.
T Consensus 94 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 94 -TAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 23334567778889999999999877653
No 95
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.75 E-value=0.18 Score=38.57 Aligned_cols=101 Identities=8% Similarity=0.064 Sum_probs=70.8
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh-
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA- 130 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r- 130 (162)
.++..+|..|.+.|+.+.|.+.|.++. ..... ..+..+.+.++.+.. +++......+.++-.+-.. ..+...
T Consensus 207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~a~~~~~~--~~~~~~~ 279 (327)
T 3cv0_A 207 QLWNKLGATLANGNRPQEALDAYNRAL-DINPG---YVRVMYNMAVSYSNM-SQYDLAAKQLVRAIYMQVG--GTTPTGE 279 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHTT--SCC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCC---CHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHhCCc--ccccccc
Confidence 457788888888889999998888877 43322 234566777777777 8888888888888776422 111111
Q ss_pred -----hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 -----RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 -----rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
........|..+...+++.+|...|-.++
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34455567788888999999998886554
No 96
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=95.72 E-value=0.095 Score=41.55 Aligned_cols=95 Identities=13% Similarity=0.077 Sum_probs=72.1
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|..|.+.|+.++|++.|.++. ...... .++...+..+.... +++......+.++-.+-. .+
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p----~~---- 280 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAAL-TVRPED---YSLWNRLGATLANG-DRSEEAVEAYTRALEIQP----GF---- 280 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCC----Cc----
Confidence 467789999999999999999999988 544332 44667777777778 999999999998877631 22
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
......-|..+...++|.+|...|-.++
T Consensus 281 ~~~~~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 281 IRSRYNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2234456777788899999998887654
No 97
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=95.69 E-value=0.15 Score=38.91 Aligned_cols=95 Identities=14% Similarity=-0.051 Sum_probs=72.4
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|..|.+.|+.++|.+.|.++. ...... .+....+.++.+.. +++......+.++-.+.. .+..
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~----~~~~-- 241 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAV-ELRPDD---AQLWNKLGATLANG-NRPQEALDAYNRALDINP----GYVR-- 241 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCHH--
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCC----CCHH--
Confidence 567889999999999999999999988 544332 35667777777778 999999999998877632 2222
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.....|..++..++|.+|.+.|-.++
T Consensus 242 --~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 242 --VMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33455777888999999998886654
No 98
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.62 E-value=0.11 Score=41.22 Aligned_cols=95 Identities=14% Similarity=-0.039 Sum_probs=71.4
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|..|.+.|++++|++.|.++. ..... -.++...+-.+.+.. +++......+.+|-.+- ..++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~---~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~----p~~~--- 72 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAI-TRNPL---VAVYYTNRALCYLKM-QQPEQALADCRRALELD----GQSV--- 72 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCSC---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTSC----TTCH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCc---cHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC----CCCH---
Confidence 467789999999999999999999988 53332 235566666666677 89999988888887762 2233
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+.-...|..++..++|.+|...|-.++
T Consensus 73 -~~~~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 73 -KAHFFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344466888889999999999887654
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.59 E-value=0.22 Score=37.47 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=53.3
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
.++..+|.-+.+.|++++|++.|.++. .........-+..+.+..+.+.. +++....+...++-..
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~lg~~~~~~-~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKN-ADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Confidence 356788999999999999999999998 54444444567788888888888 9999988888887765
No 100
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=95.53 E-value=0.14 Score=40.60 Aligned_cols=95 Identities=15% Similarity=-0.063 Sum_probs=74.1
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
..+..+|..|.+.|++++|++.|.++. ...... .+..+.+.++.+.. +++......+.+|-.+-. .+
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p----~~---- 132 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAI-LQDPGD---AEAWQFLGITQAEN-ENEQAAIVALQRCLELQP----NN---- 132 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC----
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCcCC---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC----CC----
Confidence 357889999999999999999999998 544332 56778888888888 999999999999887631 12
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
...-..-|..+...++|.+|.+.|-.++
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al 160 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWI 160 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 2233455777788999999999887654
No 101
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.50 E-value=0.32 Score=36.53 Aligned_cols=95 Identities=11% Similarity=-0.037 Sum_probs=69.2
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|.-+.+.|++++|+..|.++. ...... .+..+.+-.+.+.. +++......+.+|-.+- ..+.+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~~----P~~~~a- 75 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERAL-KENPQD---PEALYWLARTQLKL-GLVNPALENGKTLVART----PRYLGG- 75 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSSSC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCcHHH-
Confidence 367889999999999999999999998 543332 35566666777777 99999999988887762 123222
Q ss_pred hHHHHHHHHHHhhh-----------hcHHHHHHHhHhhc
Q psy398 132 NKLKAYEGVYCLAI-----------RQYCRAAELFVDVI 159 (162)
Q Consensus 132 nrLKvy~gl~~l~~-----------R~fk~AA~lfld~~ 159 (162)
....|..++.. ++|.+|...|-.++
T Consensus 76 ---~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al 111 (217)
T 2pl2_A 76 ---YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE 111 (217)
T ss_dssp ---HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHH
Confidence 23345555666 99999998887654
No 102
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.11 Score=42.03 Aligned_cols=102 Identities=13% Similarity=0.093 Sum_probs=68.7
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHH--HHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhhhcCCCc
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSH--RIDAVFTLFRIAYFHG--CDIQAMTAAIEKATELIEGISGGD 127 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~--kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka~~l~e~~~ggD 127 (162)
.++..+|.-|.+.|+.++|.+.|.+++ ......+. ..-++... +|.++. +++........++-....+ .++
T Consensus 56 ~al~~l~~~y~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~ 130 (434)
T 4b4t_Q 56 TSILELGQLYVTMGAKDKLREFIPHST-EYMMQFAKSKTVKVLKTL--IEKFEQVPDSLDDQIFVCEKSIEFAKR--EKR 130 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTH-HHHHTSCHHHHHHHHHHH--HHHHCSCCSCHHHHHHHHHHHHHHHHH--SSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHccchHHHHHHHHH--HHHHHhCCCCHHHHHHHHHHHHHHHHH--hCc
Confidence 468889999999999999999999987 54433322 22222222 444442 5677777777776666544 344
Q ss_pred hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398 128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDV 158 (162)
Q Consensus 128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~ 158 (162)
.-.+.++...-|-.+...++|.+|.+++-+.
T Consensus 131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 161 (434)
T 4b4t_Q 131 VFLKHSLSIKLATLHYQKKQYKDSLALINDL 161 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 3345666667777788889999888877654
No 103
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.38 E-value=0.34 Score=32.19 Aligned_cols=71 Identities=4% Similarity=-0.121 Sum_probs=58.0
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
......++..+|.-|.+.|+.++|.+.|.++. ..........+..+.+-++-+.. +++......+.++-..
T Consensus 35 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 35 GVYTPNALYWLGESYYATRNFQLAEAQFRDLV-SRYPTHDKAAGGLLKLGLSQYGE-GKNTEAQQTLQQVATQ 105 (129)
T ss_dssp STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHCCCCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 33345788899999999999999999999998 65555445567788888888888 9999999999888776
No 104
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.37 E-value=0.21 Score=39.14 Aligned_cols=95 Identities=14% Similarity=-0.044 Sum_probs=73.4
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|..|.+.|+.+.|++.|.++. ...... .+..+.+.++.+.. +++......+.++-.+-. .+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~~----~~~--- 132 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAV-QQDPKH---MEAWQYLGTTQAEN-EQELLAISALRRCLELKP----DNQ--- 132 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHH-HSCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHC-cCHHHHHHHHHHHHhcCC----CCH---
Confidence 457789999999999999999999998 544332 45677778888888 999999999998877632 122
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
..-...|..+...+++.+|.+.|-.++
T Consensus 133 -~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 133 -TALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 233455777788999999999887654
No 105
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.30 E-value=0.17 Score=33.53 Aligned_cols=74 Identities=8% Similarity=-0.018 Sum_probs=57.1
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|.-|.+.|+++.|++.|.++. ...... .+..+.+-.+.... +++......+.+|-.+... .+|....
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~~~--~~~~~~~ 80 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELV-ETDPDY---VGTYYHLGKLYERL-DRTDDAIDTYAQGIEVARE--EGTQKDL 80 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---THHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--HSCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhhhc--CCchhHH
Confidence 467899999999999999999999988 543322 24667777777777 9999999999999888654 4555433
Q ss_pred h
Q psy398 132 N 132 (162)
Q Consensus 132 n 132 (162)
.
T Consensus 81 ~ 81 (100)
T 3ma5_A 81 S 81 (100)
T ss_dssp H
T ss_pred H
Confidence 3
No 106
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.20 E-value=0.085 Score=37.73 Aligned_cols=90 Identities=10% Similarity=-0.010 Sum_probs=67.3
Q ss_pred hHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHH
Q psy398 57 KLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKA 136 (162)
Q Consensus 57 ~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKv 136 (162)
+|..|.+.||.++|+++|.++. . .....-...|.+-++.+.. +++....+++.+|-.+- ..+.+ .-.
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~-~---~~p~~~~~~~~la~~y~~~-~~~~~A~~~~~~al~~~----p~~~~----a~~ 69 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST-P---SPRQKSIKGFYFAKLYYEA-KEYDLAKKYICTYINVQ----ERDPK----AHR 69 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS-C---SHHHHHTTHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHH----HHH
T ss_pred hHHHHHHcChHHHHHHHHHHhc-c---cCcccHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCCHH----HHH
Confidence 6778889999999999999998 3 2334445668888888888 99999999999998773 22332 334
Q ss_pred HHHHHHhhhhcHHHHHHHhHhhc
Q psy398 137 YEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 137 y~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.-|..+...++|.+|...|-.++
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHHHHHH
Confidence 56778888999999999987765
No 107
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.15 E-value=0.24 Score=36.96 Aligned_cols=99 Identities=13% Similarity=-0.063 Sum_probs=70.1
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG 126 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg 126 (162)
...--.++..+|..|...|+.+.|++.|.++. ..... ..+..+.+..+.+.. +++......+.+|-.+-. .
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~~---~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~----~ 109 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIRPD---MPEVFNYLGIYLTQA-GNFDAAYEAFDSVLELDP----T 109 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCCC---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----T
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HcCCC---cHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcCc----c
Confidence 34556788899999999999999999999988 54332 235666777777777 899999999988887632 1
Q ss_pred chhhhhHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398 127 DWSARNKLKAYEGVYCLAIRQYCRAAELFVDV 158 (162)
Q Consensus 127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~ 158 (162)
+. ......|..++..++|.+|.+.|-.+
T Consensus 110 ~~----~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 110 YN----YAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp CT----HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cc----HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 21 23334556666777777777776543
No 108
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.03 E-value=0.22 Score=42.09 Aligned_cols=98 Identities=9% Similarity=-0.105 Sum_probs=62.4
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCC----CCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADK----TNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD 127 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~----~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD 127 (162)
.++..+|..|++.|+.++|.+.|.++. +. ...+....++..++..+.... +++......+.++-.+- ..+
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~----p~~ 549 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNAL-LLVKKTQSNEKPWAATWANLGHAYRKL-KMYDAAIDALNQGLLLS----TND 549 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHSCCCSGGGHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHS----SCC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH-HhhhccccchhhHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC----CCC
Confidence 346677777888888888888888776 43 122333356777777777777 78777777777766552 112
Q ss_pred hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
. ..-..-|..+...+++.+|.+.|-.++
T Consensus 550 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 550 A----NVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred h----HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 1 223344555666788888887775543
No 109
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.00 E-value=0.13 Score=42.52 Aligned_cols=96 Identities=10% Similarity=-0.021 Sum_probs=73.2
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCC
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGG 126 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~gg 126 (162)
..+.-+++..+|..|.+.|++++|++.|.++. ...... .+..+.+..+.+.. +++......+.++-.+- .
T Consensus 21 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~-----p 90 (537)
T 3fp2_A 21 RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI-ELDPNE---PVFYSNISACYIST-GDLEKVIEFTTKALEIK-----P 90 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC-----T
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-hhCCCC---cHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcC-----C
Confidence 34566889999999999999999999999988 543222 46777778888888 99999999999887752 2
Q ss_pred chhhhhHHHHHHHHHHhhhhcHHHHHHHh
Q psy398 127 DWSARNKLKAYEGVYCLAIRQYCRAAELF 155 (162)
Q Consensus 127 DW~rrnrLKvy~gl~~l~~R~fk~AA~lf 155 (162)
++ ...-...|..++..++|.+|...|
T Consensus 91 ~~---~~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 91 DH---SKALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp TC---HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ch---HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 21 233445677788899999999887
No 110
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.99 E-value=0.3 Score=41.17 Aligned_cols=101 Identities=13% Similarity=0.014 Sum_probs=63.2
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
++..+|..|++.|+.++|.+.|.++. +.... -.+....++.+.... +++......+.++-..... .|.+.+...
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~-~~~~p~~~~ 516 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSY-ALFQY---DPLLLNELGVVAFNK-SDMQTAINHFQNALLLVKK-TQSNEKPWA 516 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH-HHCCC---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH-SCCCSGGGH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC---ChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHhhhc-cccchhhHH
Confidence 45566777777777777777777766 43222 124566666666667 7888888887777666321 022322223
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 133 KLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 133 rLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
..-..-|..+...+++.+|.+.|-.++
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344455667778999999999886554
No 111
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=94.93 E-value=0.24 Score=40.99 Aligned_cols=94 Identities=6% Similarity=-0.060 Sum_probs=47.5
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
++..+|..|.+.|+.+.|.+.|.++. ...... .+..+.+..+.+.. +++......+.++-.... .+.+
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~----~~~~--- 379 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQ-SLNPEN---VYPYIQLACLLYKQ-GKFTESEAFFNETKLKFP----TLPE--- 379 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---SHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCTH---
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC----CChH---
Confidence 34455555555555555555555554 322111 13344444444455 555555555555544421 1211
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 133 KLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 133 rLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.....|..+...++|.+|.+.|-.++
T Consensus 380 -~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 380 -VPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 22334666667777777777665543
No 112
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.92 E-value=0.3 Score=37.23 Aligned_cols=27 Identities=4% Similarity=-0.269 Sum_probs=13.3
Q ss_pred HHHHhhHhHHHh----hcCHHHHHHHHHHhc
Q psy398 52 GIWQAKLDYLCS----IGDRAEAFKLADSKF 78 (162)
Q Consensus 52 ~~~~~~a~~~~~----iGD~~~A~~ay~~~~ 78 (162)
.++..+|..|.+ .||.++|++.|.++.
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 69 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKAC 69 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH
Confidence 344444555555 555555555555544
No 113
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.91 E-value=0.13 Score=38.74 Aligned_cols=92 Identities=14% Similarity=-0.009 Sum_probs=59.7
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|.-|.+.|+.++|+++|.++. .-. .-.++.+.+-++.+.. +++......+.++-.+- ..+.+
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~----~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~----P~~~~-- 186 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQAL-ALE----DTPEIRSALAELYLSM-GRLDEALAQYAKALEQA----PKDLD-- 186 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHC----CCHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHS----TTCHH--
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH-hcc----cchHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCChH--
Confidence 467789999999999999999999988 544 2345667777777888 99999999998887762 22332
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVD 157 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld 157 (162)
....-|..++..+++.+|-..|-.
T Consensus 187 --~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 187 --LRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp --HHHHHHHHHTC-------------
T ss_pred --HHHHHHHHHHHccCHHHHHHHHHH
Confidence 333457778889999999887754
No 114
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.87 E-value=0.16 Score=41.62 Aligned_cols=105 Identities=8% Similarity=-0.078 Sum_probs=65.1
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh-
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA- 130 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r- 130 (162)
.++..+|..|.+.|++++|.++|.+++ .........-.+.+..-.+..+..+++.....+..+|=.+-.. ..+|..
T Consensus 335 ~~~~~lg~~~~~~~~~~~A~~~~~kaL-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~~~ 411 (472)
T 4g1t_A 335 RVCSILASLHALADQYEEAEYYFQKEF-SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKEKM 411 (472)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHH-HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHHHH
T ss_pred hhhhhHHHHHHHhccHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHHHH
Confidence 356789999999999999999999999 7777777777777777666665437888777777777555321 222221
Q ss_pred hhHH-----------------HHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKL-----------------KAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrL-----------------Kvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.+.+ -..-|..+...+++.+|.+.|-.++
T Consensus 412 ~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kAL 457 (472)
T 4g1t_A 412 KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGL 457 (472)
T ss_dssp HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0110 1134666677889999988886654
No 115
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.84 E-value=0.091 Score=43.02 Aligned_cols=100 Identities=8% Similarity=-0.096 Sum_probs=72.1
Q ss_pred HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHH--------------HHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy398 50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSH--------------RIDAVFTLFRIAYFHGCDIQAMTAAIEK 115 (162)
Q Consensus 50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~--------------kiD~~l~~iRv~~f~~~d~~~v~~~i~k 115 (162)
.-..+..+|..|.+.|+++.|+++|.+++ ........ +..+.+++-.+.+.. +++.....+..+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al-~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~-g~~~~A~~~~~~ 255 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAI-AYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKL-KRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHH-HHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTT-TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 44568889999999999999999999988 54432210 113555666666666 888888888888
Q ss_pred HHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 116 ATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 116 a~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
|-.+- .+ ..+.-...|..++..++|.+|...|-.++
T Consensus 256 al~~~-----p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 256 VLTEE-----EK---NPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HHHHC-----TT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHHhC-----CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 87652 11 12344567888899999999999998765
No 116
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.75 E-value=0.78 Score=34.11 Aligned_cols=95 Identities=14% Similarity=0.070 Sum_probs=62.3
Q ss_pred hHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhH---
Q psy398 57 KLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNK--- 133 (162)
Q Consensus 57 ~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnr--- 133 (162)
+|.-|.+.|+.++|+++|.+++ ...... .+..+.+-.+-+.. +++........++-.+- | .+.+-.+.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~--P--~~~~a~~~lg~ 130 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELL-QKAPNN---VDCLEACAEMQVCR-GQEKDALRMYEKILQLE--A--DNLAANIFLGN 130 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC--T--TCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH-HHCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC--C--CCHHHHHHHHH
Confidence 8888888888888888888877 433221 35566666666667 88888888777776652 1 11111100
Q ss_pred ----------------------------HHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 134 ----------------------------LKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 134 ----------------------------LKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
.....|+..+..++|.+|...|-.++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 131 YYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 112357788888999999988876653
No 117
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.2 Score=40.95 Aligned_cols=100 Identities=9% Similarity=-0.082 Sum_probs=65.0
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
++..+|..|.+.|+.+.|++.|.++. ...... .++...+..+.+.. +++......+.++-.+... .++.....
T Consensus 340 ~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~la~~~~~~-~~~~~A~~~~~~a~~~~~~--~~~~~~~~ 412 (514)
T 2gw1_A 340 PYIQLACLAYRENKFDDCETLFSEAK-RKFPEA---PEVPNFFAEILTDK-NDFDKALKQYDLAIELENK--LDGIYVGI 412 (514)
T ss_dssp HHHHHHHHTTTTTCHHHHHHHHHHHH-HHSTTC---SHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHT--SSSCSSCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HHcccC---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhhc--cchHHHHH
Confidence 66778888888888888888888877 433221 24556666677777 8888888888888776432 22211112
Q ss_pred HHHHHHHHHHhh---hhcHHHHHHHhHhhc
Q psy398 133 KLKAYEGVYCLA---IRQYCRAAELFVDVI 159 (162)
Q Consensus 133 rLKvy~gl~~l~---~R~fk~AA~lfld~~ 159 (162)
..-...|..++. .++|.+|.+.|-.++
T Consensus 413 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~ 442 (514)
T 2gw1_A 413 APLVGKATLLTRNPTVENFIEATNLLEKAS 442 (514)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 234455666666 777877777765543
No 118
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.52 E-value=0.45 Score=31.91 Aligned_cols=54 Identities=9% Similarity=0.028 Sum_probs=24.3
Q ss_pred hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 64 IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 64 iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
.|+.++|++.|.+++ ....+.....++.+.+-.+.+.. +++......+.+|-.+
T Consensus 3 ~g~~~~A~~~~~~al-~~~~~~p~~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~ 56 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAI-ASGLQGKDLAECYLGLGSTFRTL-GEYRKAEAVLANGVKQ 56 (117)
T ss_dssp ----CCCHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 345555555555555 43322333444444444444444 5555555555555443
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=94.47 E-value=0.56 Score=40.33 Aligned_cols=96 Identities=14% Similarity=-0.051 Sum_probs=52.3
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
-.++..+|..|.+.|+.++|.+.|.++. ...... .+..+.+-.+.+.. +++....+.+.+|-.+- ..+.+
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~----p~~~~- 126 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQAS-DAAPEH---PGIALWLGHALEDA-GQAEAAAAAYTRAHQLL----PEEPY- 126 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCCHH-
Confidence 4566666666666677777776666665 332221 33444555555555 66666666666665542 11221
Q ss_pred hhHHHHHHHHHHhhh---hcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAI---RQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~---R~fk~AA~lfld~~ 159 (162)
.....|..+... +++.+|.+.|-.++
T Consensus 127 ---~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 127 ---ITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp ---HHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 222334444555 66777766665543
No 120
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.37 E-value=0.75 Score=36.69 Aligned_cols=93 Identities=10% Similarity=-0.086 Sum_probs=52.2
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
++..+|.-|++.|+.+.|++.|.++. ...... .+..+.+..+-... +++......+.++-.+.. .+.+..
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~~p----~~~~~~- 308 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAI-ELQPHF---PDAYCNLANALKEK-GSVAEAEDCYNTALRLCP----THADSL- 308 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSC---HHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHCT----TCHHHH-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCc----ccHHHH-
Confidence 45567777777777777777777776 432221 24455566666666 777777777776665521 122211
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398 133 KLKAYEGVYCLAIRQYCRAAELFVDV 158 (162)
Q Consensus 133 rLKvy~gl~~l~~R~fk~AA~lfld~ 158 (162)
..-|..+...+++.+|.+.|-.+
T Consensus 309 ---~~l~~~~~~~g~~~~A~~~~~~a 331 (388)
T 1w3b_A 309 ---NNLANIKREQGNIEEAVRLYRKA 331 (388)
T ss_dssp ---HHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCHHHHHHHHHHH
Confidence 12233444555566655555443
No 121
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.35 E-value=0.52 Score=31.21 Aligned_cols=65 Identities=11% Similarity=-0.158 Sum_probs=52.7
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE 121 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e 121 (162)
.++..+|..|.+.|+.+.|++.|.++. ...... .+..+.+-.+.... +++......+.++-.+..
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAAL-DFDPTY---SVAWKWLGKTLQGQ-GDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH-HHCCCc---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcc
Confidence 578899999999999999999999988 543322 34566777777778 999999999999988754
No 122
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=94.31 E-value=0.88 Score=38.73 Aligned_cols=95 Identities=12% Similarity=-0.024 Sum_probs=73.9
Q ss_pred HHHHHhhHhHHHhhcCH-HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh
Q psy398 51 SGIWQAKLDYLCSIGDR-AEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS 129 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~-~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~ 129 (162)
-.++..+|..|...|++ ++|++.|.+++ ..... -.+..+.+-.+.+.. +++......+.+|-.+ ..+
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al-~~~p~---~~~a~~~lg~~~~~~-g~~~~A~~~~~~al~~-----~p~-- 169 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAV-KLEPE---LVEAWNQLGEVYWKK-GDVTSAHTCFSGALTH-----CKN-- 169 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHTT-----CCC--
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHH-hhCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhh-----CCC--
Confidence 45778999999999999 99999999988 54332 246777777888888 9999999999888765 223
Q ss_pred hhhHHHHHHHHHHhhh---------hcHHHHHHHhHhhc
Q psy398 130 ARNKLKAYEGVYCLAI---------RQYCRAAELFVDVI 159 (162)
Q Consensus 130 rrnrLKvy~gl~~l~~---------R~fk~AA~lfld~~ 159 (162)
...-...|..+... ++|.+|.+.|-.++
T Consensus 170 --~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al 206 (474)
T 4abn_A 170 --KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206 (474)
T ss_dssp --HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 24455567777778 99999999887765
No 123
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.29 E-value=2.4 Score=37.24 Aligned_cols=116 Identities=14% Similarity=0.081 Sum_probs=83.7
Q ss_pred hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcC--CCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q psy398 41 KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFA--DKTNPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKA 116 (162)
Q Consensus 41 ~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~--~~~~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka 116 (162)
.-+|.+--.+-..+..+|.-|...|++++|...|.++++ .+..+..|. |+..++..+|..+. +++......+.+|
T Consensus 341 ~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 341 PVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA-QLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677844567888899999999999999999999998651 234555552 44555555554443 8999999999999
Q ss_pred HhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398 117 TELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVD 157 (162)
Q Consensus 117 ~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld 157 (162)
-...+.--|.|=-.-..+..-.+-..+..|.|++|-.+|-.
T Consensus 420 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 420 YAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876533444333445666677777888889988877653
No 124
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.27 E-value=0.54 Score=37.04 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=45.4
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
.+|..+|.++.+.|+.++|.+.|.+++ .-...... .+.....++-... +++....+...+|-.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~--~~~~~~~~~~~~~-~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLL-AIEDIDPT--LVYIQYMKFARRA-EGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-TSSSSCTH--HHHHHHHHHHHHH-HCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH-hccccCcc--HHHHHHHHHHHHh-cCHHHHHHHHHHHHhc
Confidence 467889999999999999999999988 53322111 1555556665566 7887777777777654
No 125
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.23 E-value=0.32 Score=30.22 Aligned_cols=65 Identities=20% Similarity=0.211 Sum_probs=52.2
Q ss_pred HHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 50 VSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 50 Ir~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
.-.++..+|..|.+.|+.+.|++.|.+++ ...... .+..+.+-.+.+.. +++......+.++-.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~~---~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNN---AEAWYNLGNAYYKQ-GDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHH-hcCCCC---HHHHHHHHHHHHHH-hhHHHHHHHHHHHHhc
Confidence 34678899999999999999999999988 543322 35666777777777 9999999999988776
No 126
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=94.18 E-value=1.2 Score=33.79 Aligned_cols=106 Identities=9% Similarity=-0.035 Sum_probs=73.0
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCC-------h--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNP-------K--SHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIE 121 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s-------~--g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e 121 (162)
-..+..+|.-+.+.|++++|+++|++++ ..... . +....+..+.-.+-.-. +++........+|=.+..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL-~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L-gr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAM-EISHTMPPEEAFDHAGFDAFCHAGLAEALAGL-RSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCCCCcchhhhhhccchHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHhhh
Confidence 3457889999999999999999999988 65544 1 12233555555555666 899999999888888722
Q ss_pred hcC--CCchhhhhHHH--HHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 122 GIS--GGDWSARNKLK--AYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 122 ~~~--ggDW~rrnrLK--vy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
..+ ..||. ..-.+ ...|+.+...++|.+|-..|-.++
T Consensus 89 ~~~e~~pd~~-~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 89 RRGELNQDEG-KLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHCCTTSTHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccCCCchH-HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 100 12321 11111 346899999999999999986654
No 127
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=94.13 E-value=0.56 Score=30.34 Aligned_cols=64 Identities=14% Similarity=-0.036 Sum_probs=52.6
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
..++..+|..|...|+.+.|.+.|.++. ...... .+..+.+.++.+.. +++......+.++-.+
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAI-CIDPAY---SKAYGRMGLALSSL-NKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHH-hcCccC---HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhc
Confidence 3467889999999999999999999988 543332 45667777788888 9999999999998876
No 128
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.11 E-value=0.87 Score=33.84 Aligned_cols=95 Identities=7% Similarity=-0.042 Sum_probs=69.2
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHH----------------HHHHHHHhcCCHHHHHHHHHH
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFT----------------LFRIAYFHGCDIQAMTAAIEK 115 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~----------------~iRv~~f~~~d~~~v~~~i~k 115 (162)
+.+..+|.-+.+.|+++.|++.|.++. ..... -.+..+. +-.+.+.. +++......+.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~ 79 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTI-ALNID---RTEMYYWTNVDKNSEISSKLATELALAYKKN-RNYDKAYLFYKE 79 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCHH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHC-CCHHHHHHHHHH
Confidence 356778999999999999999999988 43221 2334444 66666777 999999888888
Q ss_pred HHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 116 ATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 116 a~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
|-.+- ..+.+ .....|..++..++|.+|...|-.++
T Consensus 80 al~~~----p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al 115 (208)
T 3urz_A 80 LLQKA----PNNVD----CLEACAEMQVCRGQEKDALRMYEKIL 115 (208)
T ss_dssp HHHHC----TTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHC----CCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 87762 22332 33345778888999999999887664
No 129
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=94.07 E-value=0.35 Score=38.65 Aligned_cols=64 Identities=14% Similarity=0.054 Sum_probs=46.0
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
..++..+|.-|.+.|+.++|++.|.++. ..... ..+..+.+..+-+.. +++....+...++-.+
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~---~~~~~~~l~~~~~~~-g~~~~A~~~~~~al~~ 130 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHAL-RLKPD---FIDGYINLAAALVAA-GDMEGAVQAYVSALQY 130 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHH-SCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCcc---hHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Confidence 3478889999999999999999999987 43222 234556666666666 7777777777666554
No 130
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=94.06 E-value=0.11 Score=44.79 Aligned_cols=95 Identities=12% Similarity=-0.053 Sum_probs=48.9
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
..++..+|.-|.+.|++++|++.|.++. ...... ....+.+-.+.... +++....+.+.+|-.+- ..+.+.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~---~~~~~~lg~~~~~~-g~~~eA~~~~~~al~~~----p~~~~~ 110 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAI-ELDKKY---IKGYYRRAASNMAL-GKFRAALRDYETVVKVK----PHDKDA 110 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSCTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHS----TTCTTH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCCHHH
Confidence 3456667777777777777777777766 432221 23444455555555 67777777776666552 122222
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhH
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFV 156 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfl 156 (162)
.+.+ .....++..++|.+|.+++-
T Consensus 111 ~~~l--~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 111 KMKY--QECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHH--HHHHHHHHHHHHCCC-----
T ss_pred HHHH--HHHHHHHHHHHHHHHhcccc
Confidence 2211 12222555677776666553
No 131
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.05 E-value=0.4 Score=32.42 Aligned_cols=82 Identities=13% Similarity=0.031 Sum_probs=60.1
Q ss_pred HHhhHhHHHhhcCHHHHHHHHHHhcCCCC----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh
Q psy398 54 WQAKLDYLCSIGDRAEAFKLADSKFADKT----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS 129 (162)
Q Consensus 54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~ 129 (162)
...+|.++.+.||++.|...|..++ ... .+.-.+.++...+...-+.. +++.....+..+|-.+- ..+-.
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al-~~~~~~~~~~~~~~~i~~~L~~~~~~~-g~~~~A~~~~~~al~l~----P~~~~ 81 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQAL-RQLDEGEISTIDKVSVLDYLSYAVYQQ-GDLDKALLLTKKLLELD----PEHQR 81 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHTTCCCSSCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHH-HhhhccCCCcccHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHhcC----CCCHH
Confidence 4589999999999999999999987 422 12235678888888888888 99999999999987762 22333
Q ss_pred hhhHHHHHHHHH
Q psy398 130 ARNKLKAYEGVY 141 (162)
Q Consensus 130 rrnrLKvy~gl~ 141 (162)
-.+-++.|+-+.
T Consensus 82 ~~~n~~~~~~~~ 93 (104)
T 2v5f_A 82 ANGNLKYFEYIM 93 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhhHHHHHHHH
Confidence 344445666543
No 132
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.88 E-value=0.49 Score=43.53 Aligned_cols=96 Identities=11% Similarity=-0.033 Sum_probs=61.5
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
-.++..+|.-|.+.|++++|+++|.+++ ..... -.+..+++-.+-... +++....+...+|-++- ..+.+-
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al-~l~P~---~~~a~~nLg~~l~~~-g~~~~A~~~~~kAl~l~----P~~~~a 113 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAI-RISPT---FADAYSNMGNTLKEM-QDVQGALQCYTRAIQIN----PAFADA 113 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCCHHH
Confidence 4677778888888888888888888776 43221 134555666666666 77777777777776652 122222
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
-...|..+...++|.+|.+.|-.++
T Consensus 114 ----~~~Lg~~~~~~g~~~eAi~~~~~Al 138 (723)
T 4gyw_A 114 ----HSNLASIHKDSGNIPEAIASYRTAL 138 (723)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2234666777888888888776654
No 133
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.50 E-value=0.88 Score=34.52 Aligned_cols=93 Identities=15% Similarity=0.012 Sum_probs=63.2
Q ss_pred HHHHHHhhHhHHHh----hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhhh
Q psy398 50 VSGIWQAKLDYLCS----IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF----HGCDIQAMTAAIEKATELIE 121 (162)
Q Consensus 50 Ir~~~~~~a~~~~~----iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f----~~~d~~~v~~~i~ka~~l~e 121 (162)
--.++..+|..|.+ .||.++|++.|.++. +.. -.+..+.+-.+-.. . +|+.....++.+|-.+
T Consensus 73 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~-----~~~a~~~lg~~~~~~~~~~-~~~~~A~~~~~~a~~~-- 143 (273)
T 1ouv_A 73 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKAC-DLK-----YAEGCASLGGIYHDGKVVT-RDFKKAVEYFTKACDL-- 143 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT-----CHHHHHHHHHHHHHCSSSC-CCHHHHHHHHHHHHHT--
T ss_pred CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHH-HcC-----CccHHHHHHHHHHcCCCcc-cCHHHHHHHHHHHHhc--
Confidence 34677888888888 888888988888888 542 23455555555555 6 7888777777777653
Q ss_pred hcCCCchhhhhHHHHHHHHHHhh----hhcHHHHHHHhHhhc
Q psy398 122 GISGGDWSARNKLKAYEGVYCLA----IRQYCRAAELFVDVI 159 (162)
Q Consensus 122 ~~~ggDW~rrnrLKvy~gl~~l~----~R~fk~AA~lfld~~ 159 (162)
++.. ....-|..+.. .+++.+|.+.|-.++
T Consensus 144 ----~~~~----a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 177 (273)
T 1ouv_A 144 ----NDGD----GCTILGSLYDAGRGTPKDLKKALASYDKAC 177 (273)
T ss_dssp ----TCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred ----CcHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 2322 22344666665 788888888887654
No 134
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.45 E-value=1.1 Score=29.93 Aligned_cols=69 Identities=9% Similarity=0.080 Sum_probs=56.2
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
......++..+|..|...|++++|++.|.++. ...... .+..+.+..+.+.. +++......+.++-.+-
T Consensus 61 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 61 PQDQAVLHRNRAACHLKLEDYDKAETEASKAI-EKDGGD---VKALYRRSQALEKL-GRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTSCC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHccHHHHHHHHHHHH-hhCccC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcC
Confidence 44567889999999999999999999999988 543322 56677777788888 99999999999988763
No 135
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.31 E-value=0.7 Score=36.72 Aligned_cols=56 Identities=5% Similarity=0.017 Sum_probs=32.5
Q ss_pred HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
+..+|.-|.+.|+.++|+++|.+ +.-.++.+.+.++.+.. +++....+.+.++..+
T Consensus 104 ~~~la~~~~~~g~~~~Al~~l~~---------~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 104 LLMAASIYFYDQNPDAALRTLHQ---------GDSLECMAMTVQILLKL-DRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTT---------CCSHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHhC---------CCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhh
Confidence 44445555555555555554443 12245666666776666 7777777777776654
No 136
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.29 E-value=0.56 Score=37.28 Aligned_cols=97 Identities=9% Similarity=0.002 Sum_probs=62.4
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
+++..+|.-|.+.|+.+.|.+.|.++. ..... .....+....+.+..-. +++......+.++-... +.++
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~-~~~p~-~~~~~l~~a~~~l~~~~-~~~~eA~~~~~~~l~~~----p~~~--- 200 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQ-DQDED-ATLTQLATAWVSLAAGG-EKLQDAYYIFQEMADKC----SPTL--- 200 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT-CHHHHHHHHHHHHHHCT-THHHHHHHHHHHHHHHS----CCCH---
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-hhCcC-cHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHhC----CCcH---
Confidence 467789999999999999999999988 44321 11223333333443333 55666666666555441 2233
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.+-.-.|+.++..++|.+|-..|-.++
T Consensus 201 -~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 201 -LLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 244456778888899999988887765
No 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=93.16 E-value=0.58 Score=38.65 Aligned_cols=97 Identities=10% Similarity=0.008 Sum_probs=64.3
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
.+.....|..+.+-|++++|.+.|.... . ..+++. ..+..-.+.+.. ++|..+.+++.++-.. .|-..
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~-~--~~p~~~--~~~~~a~l~~~~-~r~~dA~~~l~~a~~~------~d~~~ 169 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAP-V--AGSEHL--VAWMKAVVYGAA-ERWTDVIDQVKSAGKW------PDKFL 169 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSC-C--TTCHHH--HHHHHHHHHHHT-TCHHHHHHHHTTGGGC------SCHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHH-h--cCCchH--HHHHHHHHHHHc-CCHHHHHHHHHHhhcc------CCccc
Confidence 3445567788888888888888887776 4 334555 666666677777 8888888888643221 12222
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.+-..++-|..+-..++|.+|-..|-.++
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 34566777777777777777777766554
No 138
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=92.99 E-value=1.2 Score=37.82 Aligned_cols=94 Identities=11% Similarity=0.076 Sum_probs=57.8
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCH---------HHHHHHHHHHHhhhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDI---------QAMTAAIEKATELIEG 122 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~---------~~v~~~i~ka~~l~e~ 122 (162)
.++..+|..|.+.|++++|.++|.+++ ..... . +. ...+|..+ ... ....+.+.-.+..++.
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~--~--~~---~~~lg~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGAL-THCKN--K--VS---LQNLSMVL-RQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH-TTCCC--H--HH---HHHHHHHH-TTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC--H--HH---HHHHHHHH-HHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 478899999999999999999999999 66543 2 33 23344444 333 3333333333333332
Q ss_pred cCCCchhhhhHHHHHHHHHHhhh--------hcHHHHHHHhHhhc
Q psy398 123 ISGGDWSARNKLKAYEGVYCLAI--------RQYCRAAELFVDVI 159 (162)
Q Consensus 123 ~~ggDW~rrnrLKvy~gl~~l~~--------R~fk~AA~lfld~~ 159 (162)
...+.. .-...|..++.. ++|.+|.+.|-.++
T Consensus 209 -~p~~~~----~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al 248 (474)
T 4abn_A 209 -DVLDGR----SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAE 248 (474)
T ss_dssp -CTTCHH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred -CCCCHH----HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 012332 223445555566 88999998887664
No 139
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.88 E-value=1.3 Score=31.08 Aligned_cols=65 Identities=15% Similarity=-0.020 Sum_probs=53.7
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
-.++..+|.-|.+.|+++.|++.|.+++ ...... .+..+.+-.+.+.. +++.....++.++-.+-
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELAT-VVDPKY---SKAWSRLGLARFDM-ADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhC
Confidence 3578899999999999999999999988 543322 46677777777788 99999999999998874
No 140
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.87 E-value=1.3 Score=36.99 Aligned_cols=98 Identities=10% Similarity=0.094 Sum_probs=76.2
Q ss_pred HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchh-hhh
Q psy398 54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWS-ARN 132 (162)
Q Consensus 54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~-rrn 132 (162)
+.-+|.-|...||.++|++.+.+.+ +... ...-+++....+++.+.. +..+...+.+.+.++..+ +..|. -.-
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i-~~~~-~~~~lea~~l~vqi~L~~-~r~d~A~k~l~~~~~~~~---d~~~~~d~~ 176 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGI-DNDE-AEGTTELLLLAIEVALLN-NNVSTASTIFDNYTNAIE---DTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH-TSSC-STTHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHSC---HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-ccCC-CcCcHHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCc---cccccchHH
Confidence 4578888999999999999999998 5443 257899999999999999 999999999999887632 01154 345
Q ss_pred HHHHHHHHHHhhhh--cHHHHHHHhHh
Q psy398 133 KLKAYEGVYCLAIR--QYCRAAELFVD 157 (162)
Q Consensus 133 rLKvy~gl~~l~~R--~fk~AA~lfld 157 (162)
.+...+|...|.++ ++..|-..|=+
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~E 203 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEE 203 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 67777787777777 78888766654
No 141
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=92.82 E-value=1.1 Score=38.49 Aligned_cols=94 Identities=14% Similarity=0.086 Sum_probs=73.0
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
.++..+|..|.+.|++++|.+.|.++. +..... .+..+.+-.+.... +++....+.+.+|-.+-. .+.+
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p----~~~~-- 92 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGL-ALHPGH---PEAVARLGRVRWTQ-QRHAEAAVLLQQASDAAP----EHPG-- 92 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH-TTSTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhcCC----CCHH--
Confidence 578899999999999999999999999 544332 45667777777788 999999999999887632 2332
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDV 158 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~ 158 (162)
.....|..++..++|.+|.+.|-.+
T Consensus 93 --~~~~la~~~~~~g~~~~A~~~~~~a 117 (568)
T 2vsy_A 93 --IALWLGHALEDAGQAEAAAAAYTRA 117 (568)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3345577788899999999888654
No 142
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=92.68 E-value=0.95 Score=41.63 Aligned_cols=96 Identities=14% Similarity=0.007 Sum_probs=64.1
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
-+++..+|.-|.+.|+.++|+++|.++. +.... -.+...++-.+-... +++....+...+|-.+- ..+.+-
T Consensus 77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl-~l~P~---~~~a~~~Lg~~~~~~-g~~~eAi~~~~~Al~l~----P~~~~a 147 (723)
T 4gyw_A 77 ADAYSNMGNTLKEMQDVQGALQCYTRAI-QINPA---FADAHSNLASIHKDS-GNIPEAIASYRTALKLK----PDFPDA 147 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC----SCCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC----CCChHH
Confidence 5678888888888888888888888877 43322 145566666666667 78888888877776652 123222
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
....|..+...+++.+|.+.|-.++
T Consensus 148 ----~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 148 ----YCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp ----HHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred ----HhhhhhHHHhcccHHHHHHHHHHHH
Confidence 2234556667788888877765543
No 143
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=92.67 E-value=0.96 Score=29.26 Aligned_cols=66 Identities=8% Similarity=-0.029 Sum_probs=52.2
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC----ChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTN----PKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~----s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
.++..+|..|.+.|+.+.|.+.|.++. .... ......++.+.+..+.+.. +++......+.++-.+
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAI-EVGRENREDYRQIAKAYARIGNSYFKE-EKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHHSTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHH-hhccccchhHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHh
Confidence 567889999999999999999999988 4321 1112266777777777777 9999999999988875
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=92.66 E-value=0.75 Score=29.46 Aligned_cols=63 Identities=21% Similarity=0.217 Sum_probs=51.0
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
.++..+|..|.+.|+.+.|.+.|.++. ...... ....+.+.++.+.. +++......+.++-.+
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKAL-ELDPNN---AEAWYNLGNAYYKQ-GDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCcc---HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHh
Confidence 467789999999999999999999988 543322 35666777777777 9999999999888776
No 145
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.63 E-value=1 Score=31.10 Aligned_cols=65 Identities=11% Similarity=-0.058 Sum_probs=51.1
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
..++..+|.-|.+.|+++.|+++|.++. ...... .+..+.+-.+-+.. +++......+.++-.+.
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGA-LMDINE---PRFPFHAAECHLQL-GDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---THHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCC---cHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence 3467889999999999999999999988 433221 23456666667777 99999999999998874
No 146
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=92.23 E-value=0.63 Score=36.66 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=56.2
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKT-NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
..+..+|.++.+.|+.++|...|.++. ..+ .++....++....+++-..+ +++..+.....+|-.+.
T Consensus 204 ~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~~l~p~~~~~l~~~~~~~~~~~-g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 204 EYVLAYIDYLSHLNEDNNTRVLFERVL-TSGSLPPEKSGEIWARFLAFESNI-GDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH-HSSSSCGGGCHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHc
Confidence 467788999999999999999999999 654 45556678888888888888 99999999999888764
No 147
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=92.05 E-value=0.88 Score=30.39 Aligned_cols=64 Identities=9% Similarity=0.003 Sum_probs=52.1
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
.++..+|.-|.+.|+.+.|++.|.++. ...... .+..+.+-.+-+.. +++......+.++-.+-
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAI-EKDPNF---VRAYIRKATAQIAV-KEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHH-hCHHHHHHHHHHHHHhC
Confidence 678899999999999999999999988 543322 45566677777777 99999999999988874
No 148
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=91.96 E-value=1.2 Score=32.29 Aligned_cols=65 Identities=9% Similarity=-0.105 Sum_probs=51.1
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
..+|..+|.-|.+.|++++|+++|.++. .-.... .+..+++-.+-+.. +++........+|-.+.
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al-~l~P~~---~~~~~~lg~~~~~l-g~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAF-ALGKND---YTPVFHTGQCQLRL-KAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSSSC---CHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHH-hhCCCC---cHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence 4578899999999999999999999987 433221 24556666666667 99999999999998873
No 149
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=91.91 E-value=1.3 Score=34.75 Aligned_cols=101 Identities=11% Similarity=0.047 Sum_probs=61.2
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL------------ 119 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l------------ 119 (162)
+++..+|.-+.+.||.+.|...|.+++ ...... .+..+.+.++.+.. +++......+.++-..
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al-~~~P~~---~~a~~~la~~~~~~-g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAW-QLSNQN---GEIGLLLAETLIAL-NRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHTTSC---HHHHHHHHHHHHHT-TCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHH-HhCCcc---hhHHHHHHHHHHHC-CCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 345667777777777777777777766 332221 25566666666666 7776666666554221
Q ss_pred ---hhhcCCCchh--------------hhhHHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 120 ---IEGISGGDWS--------------ARNKLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 120 ---~e~~~ggDW~--------------rrnrLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
... | +.+ .........|..++..+++.+|...|...+.
T Consensus 193 ~~l~~~--~-~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 193 IELLXQ--A-ADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHH--H-TSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhh--c-ccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 111 0 000 0122344567788889999999999887653
No 150
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=91.77 E-value=1.7 Score=32.49 Aligned_cols=27 Identities=22% Similarity=-0.026 Sum_probs=19.1
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKF 78 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~ 78 (162)
.++..+|..|...||.++|++.|.++.
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~ 45 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAA 45 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 456667777777777777777777766
No 151
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=91.74 E-value=1.5 Score=30.16 Aligned_cols=64 Identities=11% Similarity=0.041 Sum_probs=51.5
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
-.++..+|.-|.+.|+.++|++.|.+++ +..... .+..+.+-.+-+.. +++......+.+|-.+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~-~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCI-RLDSKF---IKGYIRKAACLVAM-REWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHH-Hhhhhh---hHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
Confidence 3578899999999999999999999988 533222 34566677777777 9999999999998876
No 152
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=91.57 E-value=2.8 Score=33.89 Aligned_cols=90 Identities=10% Similarity=-0.017 Sum_probs=64.6
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
..++..+|.-|.+.|++++|+++|.+++ ...... ....+.+-.+.+.. +++......+.+|-.+-- .+..
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al-~~~p~~---~~a~~~lg~~~~~~-g~~~~A~~~~~~al~l~P----~~~~- 265 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKAL-ELDSNN---EKGLSRRGEAHLAV-NDFELARADFQKVLQLYP----NNKA- 265 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCS----SCHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHCC----CCHH-
Confidence 4789999999999999999999999998 544322 35666777777777 999999999999988731 2222
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHH
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAE 153 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~ 153 (162)
.....|..+...+++.+|.+
T Consensus 266 ---a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 266 ---AKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHH
Confidence 22233444555667776644
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=91.47 E-value=1.1 Score=28.29 Aligned_cols=64 Identities=9% Similarity=0.006 Sum_probs=50.9
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
..++..+|..|.+.|+.+.|.+.|.++. ...... ....+.+..+.... +++......+.++-.+
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~~~---~~~~~~~a~~~~~~-~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLKPDW---GKGYSRKAAALEFL-NRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHH-HhCccc---HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHc
Confidence 3467889999999999999999999988 544332 34566667777777 9999999999888765
No 154
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=91.01 E-value=2.5 Score=30.15 Aligned_cols=96 Identities=13% Similarity=0.035 Sum_probs=54.5
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
-.++..+|..|.+.|+.++|+++|.++. .....+ ..-.....+...-.. .+.. ....+.++-.+- ..+
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~-~~~p~~--~~~~~~~~~~~~~~~-~~~~-a~~~~~~al~~~----P~~--- 107 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIP-LEYQDN--SYKSLIAKLELHQQA-AESP-ELKRLEQELAAN----PDN--- 107 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCC-GGGCCH--HHHHHHHHHHHHHHH-TSCH-HHHHHHHHHHHS----TTC---
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhh-hccCCh--HHHHHHHHHHHHhhc-ccch-HHHHHHHHHHhC----CCC---
Confidence 3578899999999999999999999987 433221 121111111111111 2211 123333333321 112
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
.......|..++..++|.+|...|-.++
T Consensus 108 -~~~~~~la~~~~~~g~~~~A~~~~~~~l 135 (176)
T 2r5s_A 108 -FELACELAVQYNQVGRDEEALELLWNIL 135 (176)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2344556777888888888888887654
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=91.00 E-value=1.2 Score=30.59 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=50.1
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhhhcCCCch
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKT-NPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKATELIEGISGGDW 128 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka~~l~e~~~ggDW 128 (162)
.++..+|.-|.+.|++++|++.|.+++ +-. ........+.-...++|..+. +++.....+..+|-.. ..|.
T Consensus 43 ~~~~nlg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~-----~~~~ 116 (127)
T 4gcn_A 43 TFYNNKAAVYFEEKKFAECVQFCEKAV-EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE-----FRDP 116 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SCCH
T ss_pred HHHHhHHHHHHHhhhHHHHHHHHHHHH-HhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CcCH
Confidence 478899999999999999999999987 421 111111223334445554432 7888888888877543 2354
Q ss_pred hhhhHHH
Q psy398 129 SARNKLK 135 (162)
Q Consensus 129 ~rrnrLK 135 (162)
+...+|+
T Consensus 117 ~~~~~l~ 123 (127)
T 4gcn_A 117 ELVKKVK 123 (127)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444443
No 156
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=90.65 E-value=0.97 Score=29.53 Aligned_cols=64 Identities=11% Similarity=0.010 Sum_probs=51.6
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
..++..+|..|...|+.+.|++.|.++. ..... .....+.+..+.+.. +++......+.++-.+
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~~---~~~~~~~la~~~~~~-~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECI-QLEPT---FIKGYTRKAAALEAM-KDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCCC---chHHHHHHHHHHHHH-hhHHHHHHHHHHHHHh
Confidence 4578899999999999999999999988 54322 234666777777777 9999999999988776
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=90.43 E-value=1.3 Score=29.54 Aligned_cols=65 Identities=11% Similarity=0.075 Sum_probs=52.7
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
..++..+|..|...|+.+.|++.|.++. ..... -....+.+-.+.+.. +++......+.++-.+-
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~---~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRAL-ELDGQ---SVKAHFFLGQCQLEM-ESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCch---hHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999988 54322 244667777777778 99999999999998874
No 158
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.70 E-value=2.2 Score=37.39 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=54.0
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
..|..+|+++.+.|+++.|.+||.++. ++. .+.++.... +|.+.+.+....|+. .|+...
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~-d~~-----------~l~~l~~~~-~~~~~~~~~~~~a~~------~~~~~~- 741 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAH-DLE-----------SLFLLHSSF-NNKEGLVTLAKDAET------TGKFNL- 741 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-CHH-----------HHHHHHHHT-TCHHHHHHHHHHHHH------TTCHHH-
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHcc-Chh-----------hhHHHHHHc-CCHHHHHHHHHHHHH------cCchHH-
Confidence 467899999999999999999999998 532 233444446 777765544333333 345432
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVDV 158 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld~ 158 (162)
+. ..++..+++.+|.+++.++
T Consensus 742 -----A~-~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 742 -----AF-NAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -----HH-HHHHHHTCHHHHHHHHHHT
T ss_pred -----HH-HHHHHcCCHHHHHHHHHHc
Confidence 22 2245578888888888765
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=89.23 E-value=4.8 Score=29.03 Aligned_cols=63 Identities=13% Similarity=0.078 Sum_probs=51.6
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
.++..+|.-|.+.|+++.|++.|.+++ ...... ....+.+-.+.+.. +++......+.+|-.+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVL-KIDKNN---VKALYKLGVANMYF-GFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---HHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCccc---HHHHHHHHHHHHHc-ccHHHHHHHHHHHHHH
Confidence 678899999999999999999999988 543322 35566777777777 9999999999998876
No 160
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=89.17 E-value=4.4 Score=28.50 Aligned_cols=65 Identities=12% Similarity=-0.024 Sum_probs=51.2
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
-.++..+|.-|.+.|+.++|+++|.++. .-.... .+..+.+-.+.+.. +++......+.+|-.+.
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGA-VMDIXE---PRFPFHAAECLLQX-GELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTTC---THHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH-hcCCCC---chHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 3467789999999999999999999987 432211 24566667777777 99999999999998875
No 161
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=88.85 E-value=1.5 Score=37.67 Aligned_cols=94 Identities=10% Similarity=-0.088 Sum_probs=70.4
Q ss_pred HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch
Q psy398 49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW 128 (162)
Q Consensus 49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW 128 (162)
+--.++..+|..|.+.|++++|++.|.+++ +..... .+....+-.+.+.. +++........+|-.+- ..+.
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~----p~~~ 74 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAI-ELNPSN---AIYYGNRSLAYLRT-ECYGYALGDATRAIELD----KKYI 74 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHSC----TTCH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCCcc---HHHHHHHHHHHHHh-cCHHHHHHHHHHHHHhC----CCCH
Confidence 344567889999999999999999999988 543332 56667777777778 99999999999988762 1222
Q ss_pred hhhhHHHHHHHHHHhhhhcHHHHHHHh
Q psy398 129 SARNKLKAYEGVYCLAIRQYCRAAELF 155 (162)
Q Consensus 129 ~rrnrLKvy~gl~~l~~R~fk~AA~lf 155 (162)
..-...|..++..++|.+|.+.|
T Consensus 75 ----~~~~~lg~~~~~~g~~~eA~~~~ 97 (477)
T 1wao_1 75 ----KGYYRRAASNMALGKFRAALRDY 97 (477)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHH
Confidence 23335577788889998887765
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=88.73 E-value=4.2 Score=34.39 Aligned_cols=64 Identities=8% Similarity=0.097 Sum_probs=52.6
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
..++..+|.-|.+.|+++.|++.|.+++ ..... -....+.+-++.+.. +++......+.+|-.+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al-~~~p~---~~~a~~~~g~a~~~~-g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKAL-GLDSA---NEKGLYRRGEAQLLM-NEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCc---cHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHh
Confidence 5788999999999999999999999988 54332 245566777777777 9999999999999887
No 163
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=88.51 E-value=1.1 Score=40.28 Aligned_cols=25 Identities=12% Similarity=-0.223 Sum_probs=19.2
Q ss_pred HHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 136 AYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 136 vy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
...|..++..++|.+|...|-.++.
T Consensus 538 ~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 538 FGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 4557778888999999988876653
No 164
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=88.46 E-value=7.6 Score=33.94 Aligned_cols=102 Identities=9% Similarity=0.002 Sum_probs=71.6
Q ss_pred hhHhHHHhhcCHHHHHHHHHHhcC--CCCCChHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhh
Q psy398 56 AKLDYLCSIGDRAEAFKLADSKFA--DKTNPKSH--RIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSAR 131 (162)
Q Consensus 56 ~~a~~~~~iGD~~~A~~ay~~~~~--~~~~s~g~--kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rr 131 (162)
+.+.-+.+-|++++|...|.++++ .+..+..| .+.+.-++..+.... ++|.....+..+|=...++.-|.+ ..
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~--Hp 390 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL-QAYEEASHYARRMVDGYMKLYHHN--NA 390 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCTT--CH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHcCCC--CH
Confidence 455667788999999999988651 35555555 566666677777777 999999999998887765522333 22
Q ss_pred hHHHHH--HHHHHhhhhcHHHHHHHhHhhcc
Q psy398 132 NKLKAY--EGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 132 nrLKvy--~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
.-...| -|..+..+|+|.+|-.+|-.++.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233333 45566679999999999987764
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=88.39 E-value=1.4 Score=30.05 Aligned_cols=79 Identities=9% Similarity=-0.098 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHH
Q psy398 31 RLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMT 110 (162)
Q Consensus 31 ~l~~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~ 110 (162)
-+..++.-++.+-. . -.++..+|.-|.+.|+.+.|+++|.++. ...... .+..+.+-.+-... +++....
T Consensus 36 A~~~~~~al~~~P~--~---~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~P~~---~~~~~~la~~~~~~-g~~~~A~ 105 (121)
T 1hxi_A 36 AALAFEAVCQKEPE--R---EEAWRSLGLTQAENEKDGLAIIALNHAR-MLDPKD---IAVHAALAVSHTNE-HNANAAL 105 (121)
T ss_dssp HHHHHHHHHHHSTT--C---HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHH
Confidence 33445555553333 3 3578899999999999999999999988 543322 23445555555555 6666666
Q ss_pred HHHHHHHhh
Q psy398 111 AAIEKATEL 119 (162)
Q Consensus 111 ~~i~ka~~l 119 (162)
..+.++-.+
T Consensus 106 ~~~~~al~~ 114 (121)
T 1hxi_A 106 ASLRAWLLS 114 (121)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHh
Confidence 666665443
No 166
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=88.23 E-value=0.97 Score=38.04 Aligned_cols=79 Identities=13% Similarity=0.110 Sum_probs=57.9
Q ss_pred HHHHhhHhHHHhh-----cCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhhhhcCC
Q psy398 52 GIWQAKLDYLCSI-----GDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF-HGCDIQAMTAAIEKATELIEGISG 125 (162)
Q Consensus 52 ~~~~~~a~~~~~i-----GD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f-~~~d~~~v~~~i~ka~~l~e~~~g 125 (162)
.+|.-+|-+|.+. ||.++|.+.|++++ .-+ +++.+|.-...-+.-.. . +|.....+++++|-...-. ..
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL-~Ln--P~~~id~~v~YA~~l~~~~-gd~~~a~~~L~kAL~a~p~-~~ 274 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT-RYC--SAHDPDHHITYADALCIPL-NNRAGFDEALDRALAIDPE-SV 274 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH-HHC--CTTCSHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHCCGG-GC
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH-HhC--CCCCchHHHHHHHHHHHhc-CCHHHHHHHHHHHHcCCCC-CC
Confidence 3788999999995 99999999999999 543 34556666666664444 4 8999999999999998542 02
Q ss_pred CchhhhhHHH
Q psy398 126 GDWSARNKLK 135 (162)
Q Consensus 126 gDW~rrnrLK 135 (162)
.+|.--|.+.
T Consensus 275 P~~~lan~~~ 284 (301)
T 3u64_A 275 PHNKLLVILS 284 (301)
T ss_dssp SSCHHHHHHH
T ss_pred CChhHHHHHH
Confidence 5676444443
No 167
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=87.71 E-value=1.7 Score=36.79 Aligned_cols=67 Identities=10% Similarity=0.095 Sum_probs=53.8
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCC-CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKT-NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~-~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
..+...++++.+.|+.++|...|.++. ..+ .++....++....+++-..+ ||...+.+...++....
T Consensus 426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al-~~~~~~~~~~~~lw~~~~~~e~~~-G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 426 EYVLAYIDYLSHLNEDNNTRVLFERVL-TSGSLPPEKSGEIWARFLAFESNI-GDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHH-HSCCSCGGGCHHHHHHHHHHHHHS-SCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCHhhHHHHHHHHH-hccCCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 456778888888999999999999988 554 45556777888888888888 89999988888887775
No 168
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=87.29 E-value=3 Score=29.08 Aligned_cols=64 Identities=11% Similarity=0.113 Sum_probs=51.5
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
..++..+|.-|.+.|+++.|+..|.+++ ...... ....+.+-.+-+.. +++......+.+|-.+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al-~~~p~~---~~a~~~~g~~~~~~-g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVL-KREETN---EKALFRRAKARIAA-WKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHSTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHH-hcCCcc---hHHHHHHHHHHHHH-hcHHHHHHHHHHHHhc
Confidence 3578899999999999999999999988 543221 34566666666677 9999999999999887
No 169
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=87.21 E-value=4 Score=25.73 Aligned_cols=61 Identities=18% Similarity=0.093 Sum_probs=47.4
Q ss_pred HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRID-AVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD-~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
...+|.-|.+.|+++.|++.|.++. ...... .+ ..+.+-.+.+.. +++........+|-.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFL-QTEPVG---KDEAYYLMGNAYRKL-GDWQKALNNYQSAIEL 64 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHH-HHCSST---HHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCc---HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhc
Confidence 4568899999999999999999988 543322 23 556666666677 9999999999988876
No 170
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=86.76 E-value=3.5 Score=34.85 Aligned_cols=64 Identities=14% Similarity=0.023 Sum_probs=43.3
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
..|..+|.++.+.|+.++|.+.|.+++ ...... . -.+.....++-.-. +++....+.+.+|-..
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al-~~~p~~-~-~~~~~~~~~~~~~~-~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLL-AIEDID-P-TLVYIQYMKFARRA-EGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HSSSSC-H-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHh-CccccC-c-hHHHHHHHHHHHHh-cCHHHHHHHHHHHHhc
Confidence 457788999999999999999999998 533221 1 13445555554445 6666777777766554
No 171
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=86.70 E-value=2.6 Score=26.74 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=28.6
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCCh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK 85 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~ 85 (162)
.++..+|.-|.+.|+.+.|++.|.+++ ......
T Consensus 39 ~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~ 71 (111)
T 2l6j_A 39 VGYSNKAMALIKLGEYTQAIQMCQQGL-RYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCSST
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCc
Confidence 567899999999999999999999998 665544
No 172
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=86.57 E-value=6 Score=29.79 Aligned_cols=83 Identities=19% Similarity=0.157 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhh
Q psy398 66 DRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAI 145 (162)
Q Consensus 66 D~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~ 145 (162)
+.+.+.+.|.+..+....++..++....++++ - .+...+.+.|.--+.+++. + +++++.-.--|-|+.++-.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~----S-~~~~~~~~gI~lLe~ll~~--~-~p~~~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----S-KYNDDIRKGIVLLEELLPK--G-SKEEQRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT----C-SSHHHHHHHHHHHHHHHHH--S-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc----C-CCHHHHHHHHHHHHHHHhc--C-CccchHHHHHHHHHHHHHc
Confidence 45666677776652234666777777776666 2 6677777888777777775 2 2433333335777888888
Q ss_pred hcHHHHHHHhH
Q psy398 146 RQYCRAAELFV 156 (162)
Q Consensus 146 R~fk~AA~lfl 156 (162)
++|.+|-+.|=
T Consensus 85 ~~Y~~A~~y~~ 95 (152)
T 1pc2_A 85 KEYEKALKYVR 95 (152)
T ss_dssp SCHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 88888776653
No 173
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.73 E-value=1.5 Score=39.56 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 91 AVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 91 ~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+.-.++|..+.. +++....+.|.|+. .++. .....-..|++.|.|.-.+.+++|.+|.+.|..++
T Consensus 233 l~nllLRnYL~~-~~y~qA~~lvsk~~-fP~~--~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~ 297 (523)
T 4b4t_S 233 LINLILRDFLNN-GEVDSASDFISKLE-YPHT--DVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAI 297 (523)
T ss_dssp HHHHHHHHHHHS-SCSTTHHHHHHHHC-SCTT--TSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc-CcHHHHHHHHhcCc-CCcc--cCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 555789999999 99999999999996 5553 34555678999999999999999999999998865
No 174
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=84.04 E-value=11 Score=27.88 Aligned_cols=97 Identities=14% Similarity=-0.023 Sum_probs=61.8
Q ss_pred HHHHHhhHhHHHh----hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhhhh
Q psy398 51 SGIWQAKLDYLCS----IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF----HGCDIQAMTAAIEKATELIEG 122 (162)
Q Consensus 51 r~~~~~~a~~~~~----iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f----~~~d~~~v~~~i~ka~~l~e~ 122 (162)
..++..+|..|.. .+|.+.|++.|.++. +...+. ...+.++.+-.+-.. . .|+.....+..+|-.+
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~~~~-~~~~a~~~Lg~~y~~g~g~~-~d~~~A~~~~~~A~~~--- 158 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAA-RDSESD-AAVDAQMLLGLIYASGVHGP-EDDVKASEYFKGSSSL--- 158 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-SSTTSH-HHHHHHHHHHHHHHHTSSSS-CCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-HcCCCc-chHHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHc---
Confidence 3477888988887 789999999999998 554321 224445554444444 3 6788888888888665
Q ss_pred cCCCchhhhhHHHHHHHHHHhh------hhcHHHHHHHhHhhc
Q psy398 123 ISGGDWSARNKLKAYEGVYCLA------IRQYCRAAELFVDVI 159 (162)
Q Consensus 123 ~~ggDW~rrnrLKvy~gl~~l~------~R~fk~AA~lfld~~ 159 (162)
+++-..... -|..++. .+|+.+|...|-.++
T Consensus 159 --~~~~~a~~~----Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 159 --SRTGYAEYW----AGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp --SCTTHHHHH----HHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred --CCCHHHHHH----HHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 233332222 2333332 238888888876543
No 175
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=83.59 E-value=10 Score=32.61 Aligned_cols=94 Identities=7% Similarity=0.045 Sum_probs=59.7
Q ss_pred hcCHHHHHHHHHHhcC--CCCCChHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHH--H
Q psy398 64 IGDRAEAFKLADSKFA--DKTNPKSH--RIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKA--Y 137 (162)
Q Consensus 64 iGD~~~A~~ay~~~~~--~~~~s~g~--kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKv--y 137 (162)
.|++++|++.|.++++ .+..+..| .+...-++..+.... ++|.....+..++=...++.-|.+ .-.-... -
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~-g~~~eA~~~~~~aL~i~~~~lG~~--Hp~~a~~l~n 387 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM-QDWEGALKYGQKIIKPYSKHYPVY--SLNVASMWLK 387 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHSCSS--CHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence 4778888888887551 25555555 344455555566666 888888888888877765422332 1222222 2
Q ss_pred HHHHHhhhhcHHHHHHHhHhhcc
Q psy398 138 EGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 138 ~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
-|..+..+++|.+|..+|-.++.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 45566678999999888877653
No 176
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=83.42 E-value=18 Score=29.81 Aligned_cols=95 Identities=11% Similarity=-0.087 Sum_probs=66.4
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD 127 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD 127 (162)
.....++..+|.-|.+.|++++|++.|.+++ +.... .....+.+-.+.+.. +++....+++.+|-.+-- .+
T Consensus 270 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al-~~~p~---~~~a~~~lg~~~~~~-g~~~eA~~~l~~Al~l~P----~~ 340 (370)
T 1ihg_A 270 PVALSCVLNIGACKLKMSDWQGAVDSCLEAL-EIDPS---NTKALYRRAQGWQGL-KEYDQALADLKKAQEIAP----ED 340 (370)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTT---CHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TC
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-HhCch---hHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC----CC
Confidence 4445788999999999999999999999999 65432 245566666666777 999999999999988732 23
Q ss_pred hhhhhHHHHHHHHHHhhhhcHHHHHHHh
Q psy398 128 WSARNKLKAYEGVYCLAIRQYCRAAELF 155 (162)
Q Consensus 128 W~rrnrLKvy~gl~~l~~R~fk~AA~lf 155 (162)
.+-+ ...+......+++++|.+..
T Consensus 341 ~~~~----~~l~~~~~~~~~~~~a~k~~ 364 (370)
T 1ihg_A 341 KAIQ----AELLKVKQKIKAQKDKEKAA 364 (370)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 3222 22333344456676665543
No 177
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=82.38 E-value=11 Score=32.42 Aligned_cols=81 Identities=14% Similarity=0.109 Sum_probs=59.2
Q ss_pred hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcC--CCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHH
Q psy398 41 KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFA--DKTNPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKA 116 (162)
Q Consensus 41 ~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~--~~~~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka 116 (162)
.-+|.+--++-..+..+|.-|...|++++|...|.++++ ++..+..| .|+...+..+|..+. +++......+.+|
T Consensus 330 ~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H-p~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 330 SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS-LNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 667844557888899999999999999999999999661 23344333 245454555554433 8999999999999
Q ss_pred Hhhhhh
Q psy398 117 TELIEG 122 (162)
Q Consensus 117 ~~l~e~ 122 (162)
-...+.
T Consensus 409 l~i~~~ 414 (433)
T 3qww_A 409 IAIMEV 414 (433)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
No 178
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=82.01 E-value=4.6 Score=33.81 Aligned_cols=94 Identities=6% Similarity=0.014 Sum_probs=51.0
Q ss_pred HHHHhhHhHHHhhcC-HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhh
Q psy398 52 GIWQAKLDYLCSIGD-RAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSA 130 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD-~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~r 130 (162)
.+|..+|.-|.+.|+ +++|+++|.+++ ..... -.++..++-.+-... +++......+.+|=.+- ..+.
T Consensus 132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al-~l~P~---~~~a~~~~g~~~~~~-g~~~eAl~~~~kal~ld----P~~~-- 200 (382)
T 2h6f_A 132 TVWHFRRVLLKSLQKDLHEEMNYITAII-EEQPK---NYQVWHHRRVLVEWL-RDPSQELEFIADILNQD----AKNY-- 200 (382)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH-HHCTT---CHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHC----TTCH--
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHH-HHCCC---CHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhC----ccCH--
Confidence 456677777777774 888888887776 43222 133445555555555 66666666666665541 1111
Q ss_pred hhHHHHHHHHHHhhhhcHHHHHHHhHhh
Q psy398 131 RNKLKAYEGVYCLAIRQYCRAAELFVDV 158 (162)
Q Consensus 131 rnrLKvy~gl~~l~~R~fk~AA~lfld~ 158 (162)
..-.+.|..+...++|.+|...|-.+
T Consensus 201 --~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 201 --HAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp --HHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11123444445555665555555443
No 179
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=81.64 E-value=20 Score=29.26 Aligned_cols=99 Identities=9% Similarity=-0.136 Sum_probs=76.1
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
++..+|.-+.+.|+.+.|+..|..+. ... -....-++.+.+=++.-.. +++........+|..-. .+.....
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~~a~~~LG~al~~L-G~~~eAl~~l~~a~~g~-----~~P~~~~ 208 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAGAAGVAHGVAAANL-ALFTEAERRLTEANDSP-----AGEACAR 208 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTST-----TTTTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCC-----CCccccH
Confidence 88999999999999999999999877 443 3333456777777777778 99999999999886321 1122234
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 133 KLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 133 rLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
-.-.+.|+.+...+++.+|..+|=..+
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455799999999999999999986554
No 180
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=81.45 E-value=3.8 Score=29.14 Aligned_cols=73 Identities=16% Similarity=0.025 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHH
Q psy398 32 LKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTA 111 (162)
Q Consensus 32 l~~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~ 111 (162)
++.++.-++.+-. . ..++..+|..|.+.|+.++|.+.|.++. ....+.. .......+..+.... ++......
T Consensus 94 ~~~~~~al~~~P~--~---~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~-~~~a~~~l~~~~~~~-g~~~~A~~ 165 (176)
T 2r5s_A 94 LKRLEQELAANPD--N---FELACELAVQYNQVGRDEEALELLWNIL-KVNLGAQ-DGEVKKTFMDILSAL-GQGNAIAS 165 (176)
T ss_dssp HHHHHHHHHHSTT--C---HHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTTT-TTHHHHHHHHHHHHH-CSSCHHHH
T ss_pred HHHHHHHHHhCCC--C---HHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccC-hHHHHHHHHHHHHHh-CCCCcHHH
Confidence 4555555554434 3 3567789999999999999999999988 5443221 112344455555555 55543333
Q ss_pred H
Q psy398 112 A 112 (162)
Q Consensus 112 ~ 112 (162)
.
T Consensus 166 ~ 166 (176)
T 2r5s_A 166 K 166 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 181
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=81.05 E-value=7 Score=26.94 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH--hcCCCchHHHHH--HHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398 21 YTEMKDANEKRLKELDLEHE--KNMMDEEDQVSG--IWQAKLDYLCSIGDRAEAFKLADSKF 78 (162)
Q Consensus 21 ~~~~~~~n~~~l~~Le~~lk--~Nlg~~~~eIr~--~~~~~a~~~~~iGD~~~A~~ay~~~~ 78 (162)
.+.+.++-++-+..|++.|+ +- . ++-+.+ .+..=|.||.+.||..+|+.|+.=..
T Consensus 4 ~~~L~Eki~kYi~~l~eaL~~i~~-a--~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~ 62 (86)
T 2oo2_A 4 EEELRRETLKWLERIEERVKEIEG-D--EGFMRNIEAYISDSRYFLEKGDLVRAFECVVWAW 62 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGEEE-C--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-H--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566777777888888887 22 3 333334 46777999999999999999987655
No 182
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=80.94 E-value=11 Score=29.37 Aligned_cols=64 Identities=11% Similarity=0.072 Sum_probs=50.3
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
.++..+|.-|.+.|++++|++.|.+++ ...... ....+.+-.+.+.. +++......+.+|-.+-
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 39 VYYTNRALCYLKMQQPEQALADCRRAL-ELDGQS---VKAHFFLGQCQLEM-ESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence 567899999999999999999999999 543322 24555666666667 99999999999887763
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=80.94 E-value=4.1 Score=25.34 Aligned_cols=65 Identities=12% Similarity=-0.061 Sum_probs=41.7
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG-CDIQAMTAAIEKATEL 119 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~-~d~~~v~~~i~ka~~l 119 (162)
.++..+|..|.+.|+.+.|.+.|.++. ..... ....++.+.+.++.+ .- +++....+++.++-..
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~-~~~~~-~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVI-NVIED-EYNKDVWAAKADALR-YIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSCC-TTCHHHHHHHHHHHT-TCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH-HhCcc-cchHHHHHHHHHHHH-HHhCCHHHHHHHHHHHhhc
Confidence 467789999999999999999999998 54433 111233333333322 22 3566666666665544
No 184
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=80.75 E-value=3.5 Score=25.15 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=26.5
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCC
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADK 81 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~ 81 (162)
..++..+|..|.+.|+.+.|.+.|.++. ..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~ 72 (91)
T 1na3_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKAL-EL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH-hc
Confidence 3567899999999999999999999988 54
No 185
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=80.59 E-value=14 Score=30.73 Aligned_cols=26 Identities=8% Similarity=-0.194 Sum_probs=14.5
Q ss_pred HHHhhHhHHHh----hcCHHHHHHHHHHhc
Q psy398 53 IWQAKLDYLCS----IGDRAEAFKLADSKF 78 (162)
Q Consensus 53 ~~~~~a~~~~~----iGD~~~A~~ay~~~~ 78 (162)
++..+|.+|.. .+|.+.|++.|.++.
T Consensus 41 a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~ 70 (490)
T 2xm6_A 41 AQLELGYRYFQGNETTKDLTQAMDWFRRAA 70 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 44455555555 555555666555555
No 186
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=80.54 E-value=8.1 Score=32.25 Aligned_cols=98 Identities=12% Similarity=0.077 Sum_probs=68.0
Q ss_pred HHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhhhhcCCCc
Q psy398 49 QVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGC-DIQAMTAAIEKATELIEGISGGD 127 (162)
Q Consensus 49 eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~-d~~~v~~~i~ka~~l~e~~~ggD 127 (162)
.-.+++..+|..|.+.|+.++|+++|.+++ ...... .++.+.+-.+-... + |+......+.+|-.+-- .+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al-~l~P~~---~~a~~~~g~~l~~~-g~d~~eAl~~~~~al~l~P----~~ 165 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAI-ELNAAN---YTVWHFRRVLLKSL-QKDLHEEMNYITAIIEEQP----KN 165 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHCT----TC
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHH-HhCccC---HHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHHCC----CC
Confidence 456788999999999999999999999988 544332 23444544555555 6 58888888888877621 12
Q ss_pred hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 128 WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 128 W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
. ..-...|..+...++|.+|...|-.++
T Consensus 166 ~----~a~~~~g~~~~~~g~~~eAl~~~~kal 193 (382)
T 2h6f_A 166 Y----QVWHHRRVLVEWLRDPSQELEFIADIL 193 (382)
T ss_dssp H----HHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1 223345666667789988888876654
No 187
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=80.15 E-value=15 Score=30.58 Aligned_cols=61 Identities=15% Similarity=-0.180 Sum_probs=41.4
Q ss_pred HHHHHhhHhHHHh----hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHh
Q psy398 51 SGIWQAKLDYLCS----IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF----HGCDIQAMTAAIEKATE 118 (162)
Q Consensus 51 r~~~~~~a~~~~~----iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f----~~~d~~~v~~~i~ka~~ 118 (162)
..++..+|..|.. .+|.+.|++.|.++. +... .+..+.+-++... . +|+........+|-.
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~-----~~a~~~Lg~~y~~g~g~~-~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LKGL-----PQAQQNLGVMYHEGNGVK-VDKAESVKWFRLAAE 143 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTC-----HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCC-----HHHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHH
Confidence 3578889999999 899999999999988 5421 1333333333333 3 578777777777644
No 188
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=80.04 E-value=9.6 Score=34.01 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=62.6
Q ss_pred HhhcCHHHHHHHHHHhcCCCC-----CChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHH
Q psy398 62 CSIGDRAEAFKLADSKFADKT-----NPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKA 136 (162)
Q Consensus 62 ~~iGD~~~A~~ay~~~~~~~~-----~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKv 136 (162)
...|+.++|+++|.++. +.. .....-.+..+.+-++.+.. +++......+.+|-.+- ..+|+ ...
T Consensus 402 ~~~~~~~~A~~~~~~al-~~~~~~~~~~~p~~~~~~~~~a~~~~~~-g~~~~A~~~~~~al~~~----p~~~~----a~~ 471 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAAR-HGALDADGVDFSESVELPLMEVRALLDL-GDVAKATRKLDDLAERV----GWRWR----LVW 471 (681)
T ss_dssp TTTCCHHHHHHHHHHHH-TC-------CCTTCSHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHH----CCCHH----HHH
T ss_pred ccccCHHHHHHHHHHhh-hhcccccccccccchhHHHHHHHHHHhc-CCHHHHHHHHHHHhccC----cchHH----HHH
Confidence 56789999999999986 211 00011235677777777778 89988888888887763 33554 445
Q ss_pred HHHHHHhhhhcHHHHHHHhHhhc
Q psy398 137 YEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 137 y~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+.|..++..++|.+|.+.|-.++
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al 494 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVL 494 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 67888889999999999887665
No 189
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=79.58 E-value=7 Score=27.33 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=51.3
Q ss_pred HHHHhhHhH-HHhhcCH--HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 52 GIWQAKLDY-LCSIGDR--AEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 52 ~~~~~~a~~-~~~iGD~--~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
.++..+|.. |.+.|+. +.|.+.|.++. ...... ....+.+.++.+.. +++......+.++-.+-
T Consensus 79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al-~~~p~~---~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 79 ELYAALATVLYYQASQHMTAQTRAMIDKAL-ALDSNE---ITALMLLASDAFMQ-ANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHc-ccHHHHHHHHHHHHhhC
Confidence 467788988 8899998 99999999988 543322 35667777888888 99999999999988763
No 190
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=76.71 E-value=11 Score=28.45 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=40.2
Q ss_pred chHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh
Q psy398 46 EEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFH 102 (162)
Q Consensus 46 ~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~ 102 (162)
++++++.-...+-+-|..+||.++|..+....- ++...-.++-..|-.++..
T Consensus 5 s~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~-----~p~~~~~~V~~~I~~aldr 56 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN-----LGEMKSGVPVLAVSLALEG 56 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT-----CSGGGGHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC-----CcccHHHHHHHHHHHHHcC
Confidence 478888888888888888999999999999865 2235556667777777666
No 191
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=74.09 E-value=25 Score=26.30 Aligned_cols=66 Identities=17% Similarity=0.092 Sum_probs=48.1
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCC-------CCChH-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADK-------TNPKS-HRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~-------~~s~g-~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
+|..+|.=+.+.|++++|+.+|++++ +. ..... .-|..++..=..-... +++........+|-.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL-~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l-gr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKAL-HYFNRRGELNQDEGKLWISAVYSRALALDGL-GRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HhhhccccCCCchHHHHHHHHHhHHHHHHHC-CCHHHHHHHHHHHHhcC
Confidence 89999999999999999999999999 64 32211 1112224443333444 89999999999999884
No 192
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=73.98 E-value=23 Score=25.76 Aligned_cols=84 Identities=19% Similarity=0.174 Sum_probs=63.0
Q ss_pred hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHh
Q psy398 64 IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCL 143 (162)
Q Consensus 64 iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l 143 (162)
-.++..+.+.|.+......++...++....++|+ - .+...+...|.-.++++.. ++.+++--.--|-||.+.
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~----S-~~~~d~~~GI~lLe~l~~~---~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR----T-RYNDDIRKGIVLLEELLPK---GSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT----S-SSHHHHHHHHHHHHHHTTT---SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc----C-CCHHHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHH
Confidence 3456777888888762245888999999988888 3 8899999999999999875 333333233347899999
Q ss_pred hhhcHHHHHHHh
Q psy398 144 AIRQYCRAAELF 155 (162)
Q Consensus 144 ~~R~fk~AA~lf 155 (162)
-.|+|.+|-+.+
T Consensus 86 klg~Y~~A~~~~ 97 (126)
T 1nzn_A 86 RLKEYEKALKYV 97 (126)
T ss_dssp HTTCHHHHHHHH
T ss_pred HhhhHHHHHHHH
Confidence 999999987654
No 193
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=72.61 E-value=14 Score=33.77 Aligned_cols=65 Identities=12% Similarity=0.088 Sum_probs=58.1
Q ss_pred HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
+...++|..+.||.++|...|+++. ..+.+.....+++...++.-.-+ ||...+.+-.+++....
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal-~~~~~~~~~~~lw~~~~~fE~~~-G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSI-DKISDSHLLKMIFQKVIFFESKV-GSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHT-TTSSSTTHHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhC
Confidence 4678889999999999999999999 88876777889999999999999 99999999999988875
No 194
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=72.42 E-value=4.1 Score=25.64 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=26.1
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCC
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKT 82 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~ 82 (162)
++..+|..|...|+.+.|.++|.++. ...
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~ 65 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAI-ELN 65 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH-HHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-hcC
Confidence 78899999999999999999999988 433
No 195
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=72.26 E-value=55 Score=33.38 Aligned_cols=85 Identities=15% Similarity=0.085 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH----hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC-ChHHHHHHHHHH
Q psy398 21 YTEMKDANEKRLKELDLEHE----KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTN-PKSHRIDAVFTL 95 (162)
Q Consensus 21 ~~~~~~~n~~~l~~Le~~lk----~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~-s~g~kiD~~l~~ 95 (162)
-.-+...|.-+-.=++.... +.+- .++|.. .+.-|...|+.++|++.|++.. -..+ -+.|+ +++-.+
T Consensus 957 ~~vl~~~n~~RR~Lidqv~a~aL~e~~~--PeeVs~----~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~-~LqnlL 1028 (1630)
T 1xi4_A 957 GSVLLESNPYRRPLIDQVVQTALSETQD--PEEVSV----TVKAFMTADLPNELIELLEKIV-LDNSVFSEHR-NLQNLL 1028 (1630)
T ss_pred HHHhcCCcHHHHHHHHHHHHhhcccccC--HHHhHH----HHHHHHhCCCHHHHHHHHHHHH-cCCCcccccH-HHHHHH
Confidence 33344455444333333333 6666 666654 5667779999999999999988 3322 12332 444448
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q psy398 96 FRIAYFHGCDIQAMTAAIEK 115 (162)
Q Consensus 96 iRv~~f~~~d~~~v~~~i~k 115 (162)
||.++-. |...+..+|.+
T Consensus 1029 i~tAIka--D~~Rv~eyI~k 1046 (1630)
T 1xi4_A 1029 ILTAIKA--DRTRVMEYINR 1046 (1630)
T ss_pred HHHHHHh--ChhhHHHHHHH
Confidence 8888775 88888888888
No 196
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=72.15 E-value=45 Score=28.29 Aligned_cols=95 Identities=7% Similarity=-0.048 Sum_probs=67.8
Q ss_pred HHhhcCHHHHHHHHHHhcCC---CCCChHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHH
Q psy398 61 LCSIGDRAEAFKLADSKFAD---KTNPKSH--RIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLK 135 (162)
Q Consensus 61 ~~~iGD~~~A~~ay~~~~~~---~~~s~g~--kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLK 135 (162)
+.+-|++++|++.|.+++ + +..+..| .+.+.-++..+.... ++|.....+-.++-...++.-|.+ ......
T Consensus 297 ~~~~g~~~~a~~~~~~~L-~~~~~~lg~~h~~~~~~~~~L~~~y~~~-g~~~eA~~~~~~~L~i~~~~lg~~--Hp~~a~ 372 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAII-SSNSERLPDINIYQLKVLDCAMDACINL-GLLEEALFYGTRTMEPYRIFFPGS--HPVRGV 372 (429)
T ss_dssp HHHTTCHHHHHHHHHHHH-TCSSCCCCTTSHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHSCSS--CHHHHH
T ss_pred HHhhccHHHHHHHHHHHH-HhccCcCCccchHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHhHHHHcCCC--ChHHHH
Confidence 446689999999999987 4 3344444 566777777788888 999999999998888765532333 222223
Q ss_pred H--HHHHHHhhhhcHHHHHHHhHhhc
Q psy398 136 A--YEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 136 v--y~gl~~l~~R~fk~AA~lfld~~ 159 (162)
. =-|..+..+++|.+|..+|-.++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3 24566677999999999887765
No 197
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=71.44 E-value=35 Score=34.75 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=45.9
Q ss_pred HHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 51 SGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 51 r~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
...|..+|..+.+.|+.++|+++|.++- + .|-+..++....-. ++|..+-+++..|....
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKAd-D--------~say~eVa~~~~~l-GkyEEAIeyL~mArk~~ 1164 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKAD-D--------PSSYMEVVQAANTS-GNWEELVKYLQMARKKA 1164 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcC-C--------hHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhc
Confidence 6778899999999999999999998764 3 33444466666666 88888888887777553
No 198
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=71.22 E-value=29 Score=25.71 Aligned_cols=51 Identities=12% Similarity=-0.019 Sum_probs=37.0
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFH 102 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~ 102 (162)
.+++..-...+-+-|..+||.++|..|....- - +...-.++-..|-.++..
T Consensus 5 ~eel~kki~~lL~EY~~~~D~~EA~~cl~EL~-~----p~f~~e~V~~~i~~alE~ 55 (152)
T 2ion_A 5 VNHLVKEIDMLLKEYLLSGDISEAEHCLKELE-V----PHFHHELVYEAIVMVLES 55 (152)
T ss_dssp CCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT-C----GGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC-C----CcchHHHHHHHHHHHHcC
Confidence 45666666677777778999999999998876 2 244456666667777665
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=69.23 E-value=19 Score=24.89 Aligned_cols=62 Identities=16% Similarity=0.054 Sum_probs=42.5
Q ss_pred HHHHHhhHhHHHh----hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhh
Q psy398 51 SGIWQAKLDYLCS----IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF----HGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 51 r~~~~~~a~~~~~----iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f----~~~d~~~v~~~i~ka~~l 119 (162)
-.++..+|..|.. .+|.++|++.|.++. +... .+.++.+-.+... . .|+.....+..+|-..
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~g~-----~~a~~~Lg~~y~~G~g~~-~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GLND-----QDGCLILGYKQYAGKGVV-KNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HTTC-----HHHHHHHHHHHHHTSSSC-CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cCCC-----HHHHHHHHHHHHCCCCCC-cCHHHHHHHHHHHHHC
Confidence 3577888888888 789999999999987 5421 3344444444444 3 6777777777777554
No 200
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=69.14 E-value=29 Score=24.84 Aligned_cols=50 Identities=12% Similarity=0.001 Sum_probs=35.3
Q ss_pred HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh
Q psy398 48 DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFH 102 (162)
Q Consensus 48 ~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~ 102 (162)
++++.-...+-+-|..+||.++|..|....- .+...-.++-..|-.++..
T Consensus 4 eel~kki~~ll~EY~~~~D~~Ea~~cl~eL~-----~p~f~~e~V~~~i~~alE~ 53 (129)
T 2nsz_A 4 NHLVKEIDMLLKEYLLSGDISEAEHCLKELE-----VPHFHHELVYEAIVMVLES 53 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT-----CGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC-----CCccHHHHHHHHHHHHHcC
Confidence 4555555566666778899999999998865 2244456677777777776
No 201
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=68.88 E-value=7.6 Score=31.32 Aligned_cols=63 Identities=11% Similarity=0.031 Sum_probs=49.0
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
.++..+|.-|.+.|+++.|++.|.+++ ...... ....+.+-++.+.. +++......+.+|-.+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al-~~~p~~---~~a~~~lg~a~~~~-g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVL-TEEEKN---PKALFRRGKAKAEL-GQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHH-HHCTTC---HHHHHHHHHHHHTT-TCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCC---HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 478899999999999999999999988 543221 34556666666667 8999999998888765
No 202
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=68.57 E-value=11 Score=25.89 Aligned_cols=67 Identities=21% Similarity=0.271 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHH--h--cCCCchHHH-HH--HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q psy398 24 MKDANEKRLKELDLEHE--K--NMMDEEDQV-SG--IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLF 96 (162)
Q Consensus 24 ~~~~n~~~l~~Le~~lk--~--Nlg~~~~eI-r~--~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~i 96 (162)
+.++-++-+..|++.|+ + .+.....+| .| .+..=|.||.+.||..+|+.|+.=.. -=+|. +
T Consensus 5 l~Eki~kYi~~leeaL~~i~~~~l~~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa~--------GwLDA----l 72 (87)
T 2pmr_A 5 CRERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITYAH--------GLLDS----L 72 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------HHHHH----H
T ss_pred HHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHH----H
Confidence 34555556666666666 2 122012232 23 46677999999999999999988766 22443 6
Q ss_pred HHHHHh
Q psy398 97 RIAYFH 102 (162)
Q Consensus 97 Rv~~f~ 102 (162)
|+|.|.
T Consensus 73 R~~~~~ 78 (87)
T 2pmr_A 73 RMLHRI 78 (87)
T ss_dssp HHHTTS
T ss_pred HHhccc
Confidence 777664
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=66.49 E-value=59 Score=27.51 Aligned_cols=86 Identities=14% Similarity=0.123 Sum_probs=61.5
Q ss_pred hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcC--CCCCChHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy398 41 KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFA--DKTNPKSH--RIDAVFTLFRIAYFHGCDIQAMTAAIEKA 116 (162)
Q Consensus 41 ~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~--~~~~s~g~--kiD~~l~~iRv~~f~~~d~~~v~~~i~ka 116 (162)
.-+|.+-..+...+..+|.-|..-|++++|++.|.++++ .+..+..| ..-..+++-.+.... +++......+.+|
T Consensus 319 ~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~-g~~~eA~~~~~~A 397 (429)
T 3qwp_A 319 ERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQ-GMFPQAMKNLRLA 397 (429)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred CcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Confidence 567755567778899999999999999999999998651 23344444 333444444555555 8999999999999
Q ss_pred HhhhhhcCCCc
Q psy398 117 TELIEGISGGD 127 (162)
Q Consensus 117 ~~l~e~~~ggD 127 (162)
-...+.--|.|
T Consensus 398 l~i~~~~lG~~ 408 (429)
T 3qwp_A 398 FDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHTCTT
T ss_pred HHHHHHhcCCC
Confidence 99877632433
No 204
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=66.15 E-value=12 Score=24.80 Aligned_cols=31 Identities=10% Similarity=-0.170 Sum_probs=25.6
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTN 83 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~ 83 (162)
.++.-+|..+.+.||++.|+..|.+++ +...
T Consensus 44 rA~~~lg~~~~~~g~y~~Ai~~w~~~l-~~~p 74 (93)
T 3bee_A 44 AALSLIANDHFISFRFQEAIDTWVLLL-DSND 74 (93)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-TCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCC
Confidence 466678999999999999999999988 5443
No 205
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=65.72 E-value=34 Score=26.40 Aligned_cols=27 Identities=11% Similarity=-0.021 Sum_probs=24.4
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKF 78 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~ 78 (162)
.++..+|.-|.+.|+.++|.+.|.++.
T Consensus 152 ~a~~~la~~~~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 152 EIGLLLAETLIALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 467889999999999999999999976
No 206
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=65.52 E-value=24 Score=22.65 Aligned_cols=78 Identities=10% Similarity=-0.017 Sum_probs=55.8
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcH
Q psy398 69 EAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQY 148 (162)
Q Consensus 69 ~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~f 148 (162)
.|++.|.++. ...... .+..+.+-++.+.. +++......+.+|-.+-. .+.. .-...|..++..+++
T Consensus 3 ~a~~~~~~al-~~~p~~---~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p----~~~~----~~~~la~~~~~~g~~ 69 (115)
T 2kat_A 3 AITERLEAML-AQGTDN---MLLRFTLGKTYAEH-EQFDAALPHLRAALDFDP----TYSV----AWKWLGKTLQGQGDR 69 (115)
T ss_dssp CHHHHHHHHH-TTTCCC---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCT----TCHH----HHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHH-HhCCCc---HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHCC----CcHH----HHHHHHHHHHHcCCH
Confidence 5778888887 433322 35667777777778 999999999998877621 1222 334668888889999
Q ss_pred HHHHHHhHhhc
Q psy398 149 CRAAELFVDVI 159 (162)
Q Consensus 149 k~AA~lfld~~ 159 (162)
.+|...|-.++
T Consensus 70 ~~A~~~~~~al 80 (115)
T 2kat_A 70 AGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999887654
No 207
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.70 E-value=37 Score=29.46 Aligned_cols=97 Identities=9% Similarity=0.128 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHH
Q psy398 20 FYTEMKDANEKRLKELDLEHE-----KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFT 94 (162)
Q Consensus 20 ~~~~~~~~n~~~l~~Le~~lk-----~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~ 94 (162)
.+++.++.....+++|...|. .+.+ ..-++.-..-+..=+.++.|.++.+..|..-+..+-.-+..+||.-|.
T Consensus 57 ~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~--~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 57 LIDEVDQDFTSRINKLRDSLFNYQKNSKDS--NTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 367777888888888888888 3334 566777777888889999999999999998662566777888887777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398 95 LFRIAYFHGCDIQAMTAAIEKATELIE 121 (162)
Q Consensus 95 ~iRv~~f~~~d~~~v~~~i~ka~~l~e 121 (162)
+|-+.. .+......-|.|.+.-||
T Consensus 135 --~ir~Lq-~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 135 --RINLLQ-KNVRDQLVDMKRLEVDID 158 (390)
T ss_pred --HHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 444556 666666666666666554
No 208
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=60.48 E-value=17 Score=30.46 Aligned_cols=32 Identities=9% Similarity=0.060 Sum_probs=25.4
Q ss_pred HHHhhHhHHHhhc---CHHHHHHHHHHhcCCCCCCh
Q psy398 53 IWQAKLDYLCSIG---DRAEAFKLADSKFADKTNPK 85 (162)
Q Consensus 53 ~~~~~a~~~~~iG---D~~~A~~ay~~~~~~~~~s~ 85 (162)
++..+|..|...| |.++|++.|.++. +.....
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~g~~~ 212 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGV-SRGTVT 212 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCSC
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHH-HCCCHH
Confidence 7788888888889 8999999998887 544433
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=60.37 E-value=38 Score=23.26 Aligned_cols=86 Identities=15% Similarity=0.022 Sum_probs=58.9
Q ss_pred hHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 57 KLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYF----HGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 57 ~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f----~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
+|..|..-++.+.|++.|.++. +... .+.++.+=.+-.. - .|+.....+..+|-.. |+.+-.+
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa-~~g~-----~~a~~~Lg~~y~~G~g~~-~d~~~A~~~~~~Aa~~------g~~~a~~ 97 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKAC-ELNS-----GNGCRFLGDFYENGKYVK-KDLRKAAQYYSKACGL------NDQDGCL 97 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHH-HTTC-----HHHHHHHHHHHHHCSSSC-CCHHHHHHHHHHHHHT------TCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHH-cCCC-----HHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHHHcC------CCHHHHH
Confidence 8999999899999999999998 5421 2444444444443 3 6888888888888543 4544433
Q ss_pred HHHHHHHHHHhh----hhcHHHHHHHhHhhc
Q psy398 133 KLKAYEGVYCLA----IRQYCRAAELFVDVI 159 (162)
Q Consensus 133 rLKvy~gl~~l~----~R~fk~AA~lfld~~ 159 (162)
.| |..+.. .+|+.+|.+.|-.+.
T Consensus 98 ~L----g~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 98 IL----GYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HH----HHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HH----HHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 33 444455 789999998887653
No 210
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=59.67 E-value=13 Score=27.04 Aligned_cols=42 Identities=5% Similarity=-0.049 Sum_probs=32.4
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHH
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRI 89 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~ki 89 (162)
.+.-|+.+.-+|--+++.||+++|.+.....+ +.-....+-.
T Consensus 70 p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL-~~eP~n~QA~ 111 (126)
T 1nzn_A 70 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL-QTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhCCCCHHHH
Confidence 45788899999999999999999999888887 5544444443
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=56.58 E-value=44 Score=24.95 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=46.1
Q ss_pred HHHHHHHhcCCCchHHHHHHHHhhHhHHHhhcC----------HHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc
Q psy398 34 ELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGD----------RAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG 103 (162)
Q Consensus 34 ~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iGD----------~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~ 103 (162)
.++..++.|-. +. +++..+|.=+.+.|. .++|+.+|.+++.-......-...+.......|.+.
T Consensus 24 ~~~~Ai~l~P~--~a---ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~- 97 (158)
T 1zu2_A 24 DAENTYKSNPL--DA---DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLT- 97 (158)
T ss_dssp HHHHHHHHCTT--CH---HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHCCC--CH---HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccC-
Confidence 34444444444 43 355667777776665 569999999988223344444555666666666654
Q ss_pred CCHHHHHHHHHHHHhh
Q psy398 104 CDIQAMTAAIEKATEL 119 (162)
Q Consensus 104 ~d~~~v~~~i~ka~~l 119 (162)
.+|.......++|...
T Consensus 98 P~~~~a~g~~~eA~~~ 113 (158)
T 1zu2_A 98 PDETEAKHNFDLATQF 113 (158)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cchhhhhccHHHHHHH
Confidence 4554444444444444
No 212
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=55.78 E-value=50 Score=27.18 Aligned_cols=52 Identities=13% Similarity=0.001 Sum_probs=37.8
Q ss_pred chHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh
Q psy398 46 EEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFH 102 (162)
Q Consensus 46 ~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~ 102 (162)
+++++..-...+-.-|..+||.++|..|....- . +...-.++-..|-.++..
T Consensus 6 s~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~-~----p~~~~~~v~~~i~~~le~ 57 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLHLNDMKEAVQCVQELA-S----PSLLFIFVRHGVESTLER 57 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTC-C----GGGHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcC-C----cccHHHHHHHHHHHHhCC
Confidence 367788888888888889999999999998875 2 224445566666666554
No 213
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=54.88 E-value=27 Score=30.65 Aligned_cols=25 Identities=16% Similarity=-0.195 Sum_probs=7.8
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSK 77 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~ 77 (162)
++..+|+.|+..|.+++|...|.++
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp -------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 6666777777766666666666655
No 214
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=52.13 E-value=37 Score=22.50 Aligned_cols=40 Identities=8% Similarity=-0.049 Sum_probs=32.6
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHH
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAV 92 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~ 92 (162)
+-...+|+-+.+.|+.++|..++.++. .=|..++.-+-+.
T Consensus 18 l~eV~~GE~L~~~g~~~~~~~hf~nAl-~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 18 LEEIQLGEELLAQGDYEKGVDHLTNAI-AVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 344578999999999999999999998 7788777766554
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=51.64 E-value=47 Score=21.65 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCch-hhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 90 DAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDW-SARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 90 D~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW-~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+-||.+=++.+.. +|+.....-+.+|-...+. +..+ ..+..+--+-|..+...+++..|-..+-.++
T Consensus 6 ~dc~~lG~~~~~~-~~y~~A~~W~~~Al~~~~~--~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 6 EDCFELGKVAYTE-ADYYHTELWMEQALRQLDE--GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHT--TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-cchHHHHHHHHHHHHhhhc--cCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5688899999999 9999999999999998764 2111 1233444567888889999999988776543
No 216
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=50.79 E-value=1e+02 Score=25.31 Aligned_cols=122 Identities=12% Similarity=0.107 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHH---hcCCCch-HHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC---ChHHHHHHHHHHH
Q psy398 24 MKDANEKRLKELDLEHE---KNMMDEE-DQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTN---PKSHRIDAVFTLF 96 (162)
Q Consensus 24 ~~~~n~~~l~~Le~~lk---~Nlg~~~-~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~---s~g~kiD~~l~~i 96 (162)
+-..........++.++ .-++..+ ..-.++..-.+.-|.+.|..+.|.+.+.++. .-.. +...-+=+-+.-.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~-~~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT-NAIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCccccccchHHHHHHHHH
Confidence 44444455566666666 2111001 1234566678999999999999999999887 3322 2223333333334
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHh
Q psy398 97 RIAYFHGC-DIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELF 155 (162)
Q Consensus 97 Rv~~f~~~-d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lf 155 (162)
.|.+..|+ ++... +.--+.+.+. .++|...+-|=. .+|..++|.+|-+.|
T Consensus 184 ~v~l~~g~~~~q~A---~~~f~El~~~--~p~~~~~~lLln----~~~~~g~~~eAe~~L 234 (310)
T 3mv2_B 184 YIKFATNKETATSN---FYYYEELSQT--FPTWKTQLGLLN----LHLQQRNIAEAQGIV 234 (310)
T ss_dssp HHHHHHTCSTTTHH---HHHHHHHHTT--SCSHHHHHHHHH----HHHHHTCHHHHHHHH
T ss_pred HHHHHhCCccHHHH---HHHHHHHHHh--CCCcccHHHHHH----HHHHcCCHHHHHHHH
Confidence 55777632 44444 4444445666 667865433333 688999999998887
No 217
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=50.34 E-value=82 Score=24.00 Aligned_cols=67 Identities=10% Similarity=-0.001 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCc---hhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 90 DAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGD---WSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 90 D~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggD---W~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
=.++..++-.+.. +-++.|.---..+-++.+. ..| -+-+-..-+|.|-.+...|+|.+|...|-.++
T Consensus 21 ~~l~dqik~L~d~-~LY~sA~~La~lLlSl~~~--~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 21 MNVIDHVRDMAAA-GLHSNVRLLSSLLLTLSNN--NPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp CCHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH--STTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-hhHHHHHHHHHHHHHhhcC--CcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3567788888888 8888888888888888654 333 45677788999999999999999999987754
No 218
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=48.60 E-value=81 Score=23.44 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=52.2
Q ss_pred hHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHH
Q psy398 59 DYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHG--CDIQAMTAAIEKATELIEGISGGDWSARNKLKA 136 (162)
Q Consensus 59 ~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~--~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKv 136 (162)
.-..+.+.+++|+++|.+++.-......--+.+...+++.+=+.+ .-...+.+.|..-+..++- ..+.. ..-.
T Consensus 10 ~~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~---~A~~ 84 (158)
T 1zu2_A 10 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKD---EAVW 84 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCH---HHHH
T ss_pred cHHHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcH---HHHH
Confidence 356788899999999999883344454444445555555543320 0012233444444444433 22211 1112
Q ss_pred HHHHHHhhh-----------hcHHHHHHHhHhhc
Q psy398 137 YEGVYCLAI-----------RQYCRAAELFVDVI 159 (162)
Q Consensus 137 y~gl~~l~~-----------R~fk~AA~lfld~~ 159 (162)
..|..+... ++|.+|.++|-.++
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl 118 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAV 118 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHH
Confidence 234444433 58999999997765
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=45.85 E-value=90 Score=23.16 Aligned_cols=91 Identities=11% Similarity=-0.017 Sum_probs=65.3
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhHhHHHhhc---CHHHHHHHHHHhcCCCCCChHHHHH
Q psy398 14 WKMDEKFYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIG---DRAEAFKLADSKFADKTNPKSHRID 90 (162)
Q Consensus 14 ~~~D~~~~~~~~~~n~~~l~~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iG---D~~~A~~ay~~~~~~~~~s~g~kiD 90 (162)
-+++++.+...+++-.++++ .+.. . .++....|-=+++.. |.++++..++..+ +.. ++..+-|
T Consensus 7 ~~l~~~~l~~~~~~y~~e~~-------~~~~--~---~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll-~~~-~p~~~rd 72 (152)
T 1pc2_A 7 ELVSVEDLLKFEKKFQSEKA-------AGSV--S---KSTQFEYAWCLVRSKYNDDIRKGIVLLEELL-PKG-SKEEQRD 72 (152)
T ss_dssp CSCCHHHHHHHHHHHHHHHH-------TTCC--C---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH-HHS-CHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHc-------cCCC--c---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH-hcC-CccchHH
Confidence 35666777777666665554 3333 3 345567888888877 7779999999988 532 3556778
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 91 AVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 91 ~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
..+++---.+.. +|+....++++++=..
T Consensus 73 ~lY~LAv~~~kl-~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 73 YVFYLAVGNYRL-KEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-cCHHHHHHHHHHHHhc
Confidence 888888777777 9999999998887665
No 220
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=45.06 E-value=44 Score=30.38 Aligned_cols=64 Identities=11% Similarity=-0.105 Sum_probs=41.6
Q ss_pred HHhhHhHHHhhcCHHHHHHHHHHhcCCC------------CCChH-------HHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy398 54 WQAKLDYLCSIGDRAEAFKLADSKFADK------------TNPKS-------HRIDAVFTLFRIAYFHGCDIQAMTAAIE 114 (162)
Q Consensus 54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~------------~~s~g-------~kiD~~l~~iRv~~f~~~d~~~v~~~i~ 114 (162)
|...+.+..+.|+.+.|.+.|.+++ +. .++.. .--.+....+|+-.-. ++.....+-+.
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l-~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~-~~l~~AR~vf~ 458 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCI-DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI-QGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 6688999999999999999999998 53 11111 0112445555555555 66666666666
Q ss_pred HHHhh
Q psy398 115 KATEL 119 (162)
Q Consensus 115 ka~~l 119 (162)
+|-+.
T Consensus 459 ~A~~~ 463 (679)
T 4e6h_A 459 KCRRL 463 (679)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 66544
No 221
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=42.89 E-value=62 Score=20.47 Aligned_cols=61 Identities=13% Similarity=-0.021 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 90 DAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 90 D~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+..+.+-++.+.. +++......+.+|-.+-- .+.. .-...|..+...++|.+|.+.|-.++
T Consensus 8 ~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p----~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 8 FTRYALAQEHLKH-DNASRALALFEELVETDP----DYVG----TYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHST----TCTH----HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC----CcHH----HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566677777778 999999999999887621 1222 34456888889999999999887654
No 222
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=42.73 E-value=1.5e+02 Score=24.82 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=38.7
Q ss_pred chHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh
Q psy398 46 EEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFH 102 (162)
Q Consensus 46 ~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~ 102 (162)
+++|...-...+-+=|..+||.++|..|....- . +....-.++-.+|-.++..
T Consensus 7 ~~~~~~k~~~~ii~EY~~~~D~~Ea~~~l~eL~-~---p~~~~~~~v~~~i~~aLer 59 (364)
T 3l6a_A 7 SKEELLKLTETVVTEYLNSGNANEAVNGVREMR-A---PKHFLPEMLSKVIILSLDR 59 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT-C---CGGGHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC-C---chhhHHHHHHHHHHHHHCC
Confidence 367776666777777888899999999999876 2 2234556777777777665
No 223
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=41.74 E-value=20 Score=29.97 Aligned_cols=24 Identities=17% Similarity=0.044 Sum_probs=14.5
Q ss_pred HhhHhHHHhh----cCHHHHHHHHHHhc
Q psy398 55 QAKLDYLCSI----GDRAEAFKLADSKF 78 (162)
Q Consensus 55 ~~~a~~~~~i----GD~~~A~~ay~~~~ 78 (162)
..+|..|... +|.+.|++.|.++.
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA 244 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc
Confidence 4566666544 46666666666654
No 224
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=40.33 E-value=69 Score=21.15 Aligned_cols=53 Identities=8% Similarity=-0.050 Sum_probs=32.2
Q ss_pred hHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhhhh
Q psy398 57 KLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGC----DIQAMTAAIEKATELIE 121 (162)
Q Consensus 57 ~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~----d~~~v~~~i~ka~~l~e 121 (162)
.|-=.-+.|++++|+..|.... |.++..++..--- . =...+..|+++|+.+-.
T Consensus 17 ~Ave~D~~g~y~eAl~lY~~ai-----------e~l~~~lk~e~d~-~~k~~ir~K~~eY~~RAE~Lk~ 73 (83)
T 2v6y_A 17 LAVKADKEGKVEDAITYYKKAI-----------EVLSQIIVLYPES-VARTAYEQMINEYKKRISYLEK 73 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH-----------HHHHHHHHHCTTC-TTHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHH-----------HHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567889999999998877 3333333321000 0 01357888999988743
No 225
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=38.97 E-value=97 Score=23.63 Aligned_cols=55 Identities=9% Similarity=-0.051 Sum_probs=44.0
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCC--ChHHHHHHHHHHHHHHHHh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTN--PKSHRIDAVFTLFRIAYFH 102 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~--s~g~kiD~~l~~iRv~~f~ 102 (162)
..++..=+.-+|.+++.-+|+.+|.+.+..++ ..|. +.+++.=+...+|=+.+..
T Consensus 10 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~-~~~~~~~~~~k~~IL~yLIp~~Ll~ 66 (203)
T 3t5x_A 10 TAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAF-EHCHRSSQKNKRMILIYLLPVKMLL 66 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHSCTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH-HHCCHhHHHHHHHHHHHHHHHHHHc
Confidence 45555567788999999999999999999999 7774 5677887877777777766
No 226
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=38.03 E-value=1.2e+02 Score=25.99 Aligned_cols=62 Identities=11% Similarity=0.255 Sum_probs=37.5
Q ss_pred HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy398 54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATEL 119 (162)
Q Consensus 54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l 119 (162)
+..+-.-||+.|+.+.|.+.|.+|. +.-..+.. -..-.+|+...-. +++..+...+.+.+..
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~-~~G~~Pd~--~ty~~Li~~~~~~-g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMV-ESEVVPEE--PELAALLKVSMDT-KNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH-HTTCCCCH--HHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHH-hcCCCCCH--HHHHHHHHHHhhC-CCHHHHHHHHHHHHHh
Confidence 4455566777777777777777776 44333222 2344555555555 7777777777766654
No 227
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=35.82 E-value=1.1e+02 Score=21.51 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=18.1
Q ss_pred hhHhHHHhhcCHHHHHHHHHHhc
Q psy398 56 AKLDYLCSIGDRAEAFKLADSKF 78 (162)
Q Consensus 56 ~~a~~~~~iGD~~~A~~ay~~~~ 78 (162)
..|--.-..|++++|+..|..+.
T Consensus 23 ~~Ave~D~ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 23 SKAAQEDKAGNYEEALQLYQHAV 45 (117)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 34455667799999999999887
No 228
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=35.63 E-value=63 Score=28.18 Aligned_cols=67 Identities=15% Similarity=0.025 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhhh--hcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHhHhhc
Q psy398 92 VFTLFRIAYFHGCDIQAMTAAIEKATELIE--GISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVI 159 (162)
Q Consensus 92 ~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e--~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lfld~~ 159 (162)
+-.++++.|-. ++..+.++-+...+..-. ..+.---.-+-+++=|.|.+++..++|.+|.+.|..+.
T Consensus 179 ~n~L~kiYFkl-~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~ 247 (455)
T 3t5v_B 179 VNKLNNIYFRI-ESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAF 247 (455)
T ss_dssp HHHHHHHHHHS-SCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHH
Confidence 33577888887 777777666665555311 00011112357788899999999999999999998764
No 229
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=34.89 E-value=42 Score=29.36 Aligned_cols=86 Identities=6% Similarity=-0.071 Sum_probs=50.3
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
.+..+|+=+.+.|++++|+++|.++- + +.....++-.++.. ++|...+....+ ++. +.+.--
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA~-~--------~~~Wk~v~~aCv~~-~ef~lA~~~~l~---L~~-----~ad~l~ 211 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKAN-S--------TRTWKEVCFACVDG-KEFRLAQMCGLH---IVV-----HADELE 211 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHT-C--------HHHHHHHHHHHHHT-TCHHHHHHTTTT---TTT-----CHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHcC-C--------chhHHHHHHHHHHc-CcHHHHHHHHHH---HHh-----CHhhHH
Confidence 34566777778888888888888884 1 23334444455556 777777544432 221 111111
Q ss_pred HHHHHHHHHHhhhhcHHHHHHHhHhhcc
Q psy398 133 KLKAYEGVYCLAIRQYCRAAELFVDVIR 160 (162)
Q Consensus 133 rLKvy~gl~~l~~R~fk~AA~lfld~~~ 160 (162)
. -.-++...|.|.+|..+|=.++.
T Consensus 212 ~----lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 212 E----LINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp H----HHHHHHHTTCHHHHHHHHHHHTT
T ss_pred H----HHHHHHHCCCHHHHHHHHHHHhC
Confidence 1 11134567899999998876653
No 230
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=33.01 E-value=1.6e+02 Score=22.36 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=22.7
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKF 78 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~ 78 (162)
-|..+|+-..+-|+.+-|.+||.++.
T Consensus 36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 36 TWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 47788888899999999999999888
No 231
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=32.34 E-value=1.2e+02 Score=22.44 Aligned_cols=69 Identities=9% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHH
Q psy398 19 KFYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDA 91 (162)
Q Consensus 19 ~~~~~~~~~n~~~l~~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~ 91 (162)
.++.+....+..+=-.|=++|-.+.- +.-|+.+.-+|-=+++.||+++|.+.....+ +.-....+-.++
T Consensus 48 ~Lv~S~~~~di~~GI~LLe~l~~~~~---~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL-~~eP~n~QA~~L 116 (144)
T 1y8m_A 48 GLIKSTDVNDERLGVKILTDIYKEAE---SRRRECLYYLTIGCYKLGEYSMAKRYVDTLF-EHERNNKQVGAL 116 (144)
T ss_dssp HHHHSSSHHHHHHHHHHHHHHHHHCC---STHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HTCCCCHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCc---cchhHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCCCcHHHHHH
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.47 E-value=2.4e+02 Score=23.85 Aligned_cols=75 Identities=9% Similarity=0.068 Sum_probs=60.4
Q ss_pred hHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcC---CCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhh
Q psy398 47 EDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFA---DKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEG 122 (162)
Q Consensus 47 ~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~---~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~ 122 (162)
+.+-.+.+......|...||...|...++++.. .....+..++..-.+.+|+...- +||..+-++.-.+=.....
T Consensus 173 ~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e-~~y~~a~~~y~e~~~~~~~ 250 (445)
T 4b4t_P 173 MSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHK-REYLEVAQYLQEIYQTDAI 250 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhcccc
Confidence 677778888899999999999999999988640 23345677888889999999999 9999988888877665443
No 233
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=30.83 E-value=1.2e+02 Score=20.18 Aligned_cols=23 Identities=13% Similarity=-0.054 Sum_probs=18.3
Q ss_pred hhHhHHHhhcCHHHHHHHHHHhc
Q psy398 56 AKLDYLCSIGDRAEAFKLADSKF 78 (162)
Q Consensus 56 ~~a~~~~~iGD~~~A~~ay~~~~ 78 (162)
..|--.-..|++++|+.+|..+.
T Consensus 21 ~~Ave~D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 21 KRAVELDSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555577899999999999887
No 234
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=30.76 E-value=2.5e+02 Score=23.96 Aligned_cols=91 Identities=7% Similarity=-0.089 Sum_probs=56.5
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhcCCCchhhhh
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARN 132 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrn 132 (162)
.+..+-.-|++.|+.+.|++.|.+|. .....+... ..-.+|....-. +++..+.+-+..... . |...+..
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~-~~g~~Pd~~--tyn~lI~~~~~~-g~~~~A~~l~~~M~~---~--G~~Pd~~- 176 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMK-AFGIQPRLR--SYGPALFGFCRK-GDADKAYEVDAHMVE---S--EVVPEEP- 176 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHH--HHHHHHHHHHHT-TCHHHHHHHHHHHHH---T--TCCCCHH-
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCccc--eehHHHHHHHHC-CCHHHHHHHHHHHHh---c--CCCCCHH-
Confidence 46678889999999999999999999 654443322 233445544455 787777666665443 3 4433322
Q ss_pred HHHHHHHH--HHhhhhcHHHHHHHhH
Q psy398 133 KLKAYEGV--YCLAIRQYCRAAELFV 156 (162)
Q Consensus 133 rLKvy~gl--~~l~~R~fk~AA~lfl 156 (162)
+|..| .+...|++.+|-++|-
T Consensus 177 ---ty~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 177 ---ELAALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhhCCCHHHHHHHHH
Confidence 33333 2234667777776664
No 235
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=30.37 E-value=29 Score=19.76 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=15.8
Q ss_pred hHhHHHhhcCHHHHHHHHHHh
Q psy398 57 KLDYLCSIGDRAEAFKLADSK 77 (162)
Q Consensus 57 ~a~~~~~iGD~~~A~~ay~~~ 77 (162)
-++||-+||+.++|...=..+
T Consensus 8 W~eYYrsiG~~~eAeaIe~q~ 28 (33)
T 2bn5_A 8 WAEYYRSVGKIEEAEAIEKTL 28 (33)
T ss_dssp HHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHH
Confidence 478999999999886653333
No 236
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=29.57 E-value=1.2e+02 Score=19.99 Aligned_cols=22 Identities=14% Similarity=-0.014 Sum_probs=16.9
Q ss_pred hHhHHHhhcCHHHHHHHHHHhc
Q psy398 57 KLDYLCSIGDRAEAFKLADSKF 78 (162)
Q Consensus 57 ~a~~~~~iGD~~~A~~ay~~~~ 78 (162)
.|-=+-+.|++++|+..|....
T Consensus 25 ~Ave~D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 25 NAVKADKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHH
Confidence 3444567889999999998877
No 237
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=29.30 E-value=77 Score=22.00 Aligned_cols=40 Identities=8% Similarity=-0.034 Sum_probs=31.5
Q ss_pred HHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHH
Q psy398 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVF 93 (162)
Q Consensus 53 ~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l 93 (162)
-...+|+-+.+.|+.+.|+..|.+++ .=|..++.-+-+.=
T Consensus 22 ~eV~lGE~L~~~g~~e~av~Hf~nAl-~Vc~qP~~LL~i~q 61 (95)
T 1om2_A 22 EEIQLGEELLAQGDYEKGVDHLTNAI-AVCGQPQQLLQVLQ 61 (95)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH-HHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence 34578999999999999999888887 67777777665543
No 238
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=28.47 E-value=1.1e+02 Score=20.98 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=23.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhhhh
Q psy398 96 FRIAYFHGCDIQAMTAAIEKATELIEG 122 (162)
Q Consensus 96 iRv~~f~~~d~~~v~~~i~ka~~l~e~ 122 (162)
-.||-+||.|+..|...+.|.++++++
T Consensus 54 ~~IG~~fgRDHsTV~ha~~ki~~~~~~ 80 (101)
T 3pvv_A 54 PKIGQAFGRDHTTVMYAQRKILSEMAE 80 (101)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 457878879999999999999999986
No 239
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.32 E-value=94 Score=28.12 Aligned_cols=96 Identities=11% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHH-HhcCCCCCChHHHHHHHHHHH
Q psy398 21 YTEMKDANEKRLKELDLEHE---KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLAD-SKFADKTNPKSHRIDAVFTLF 96 (162)
Q Consensus 21 ~~~~~~~n~~~l~~Le~~lk---~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~-~~~~~~~~s~g~kiD~~l~~i 96 (162)
+.+.++.....|++|-.+++ .|--..+.-++.-+..+-.=+.+.+|.++.+..|. .++ ..-..+..+||-.+..|
T Consensus 55 LdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELR-RrIqyLKekVdnQlsnI 133 (562)
T 3ghg_A 55 IDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLR-SRIEVLKRKVIEKVQHI 133 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 66777777777777777776 22220134445555566666777789999988888 555 66677888888888666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 97 RIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 97 Rv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
|+ .. ++......-|.|.+.-|
T Consensus 134 rv--LQ-snLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 134 QL--LQ-KNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HH--HH-HHHHHHHHHHHHHHHHH
T ss_pred HH--HH-HHHHHHHHHHHHHHHHH
Confidence 53 34 44444444444444433
No 240
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=27.85 E-value=2.1e+02 Score=23.45 Aligned_cols=110 Identities=12% Similarity=0.041 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHH
Q psy398 29 EKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQA 108 (162)
Q Consensus 29 ~~~l~~Le~~lk~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~ 108 (162)
+..++.+.++++.|-. +.+.|. .+..++|=.||.++|.+-..-.- .-........-++-.+||--.++
T Consensus 14 ~~al~~~~~~VR~~P~--da~~R~---~LfqLLcv~G~w~RA~~QL~~~a-~l~p~~~~~a~~yr~lI~aE~~R------ 81 (273)
T 1zbp_A 14 QQALELLIEAIKASPK--DASLRS---SFIELLCIDGDFERADEQLMQSI-KLFPEYLPGASQLRHLVKAAQAR------ 81 (273)
T ss_dssp HHHHHHHHHHHHTCTT--CHHHHH---HHHHHHHHHTCHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHhCCc--CHHHHH---HHHHHHHhcCCHHHHHHHHHHHH-HhCchhhHHHHHHHHHHHHHHHH------
Confidence 4567888889998888 888888 56678999999999999887765 44444444443444444433333
Q ss_pred HHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhhcHHHHHHHh
Q psy398 109 MTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELF 155 (162)
Q Consensus 109 v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R~fk~AA~lf 155 (162)
..+-..+..+.- -|+.++ -=-..-+++..+..++..+|+.+=
T Consensus 82 --~~vfaG~~~P~~-~g~~~~--w~~~ll~Al~~~~~G~~~~A~~lr 123 (273)
T 1zbp_A 82 --KDFAQGAATAKV-LGENEE--LTKSLVSFNLSMVSQDYEQVSELA 123 (273)
T ss_dssp --HHHTTSCCCEEC-CCSCHH--HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred --HHHHcCCCCCCC-CCCCHH--HHHHHHHHHHHhhcCCHHHHHHHH
Confidence 111111122221 122222 111236677777778887777653
No 241
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=26.44 E-value=1.4e+02 Score=19.45 Aligned_cols=23 Identities=17% Similarity=0.024 Sum_probs=18.0
Q ss_pred hhHhHHHhhcCHHHHHHHHHHhc
Q psy398 56 AKLDYLCSIGDRAEAFKLADSKF 78 (162)
Q Consensus 56 ~~a~~~~~iGD~~~A~~ay~~~~ 78 (162)
..|--.-..|++++|+..|..+.
T Consensus 18 ~~Av~~D~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 18 QKAIDLDTATQYEEAYTAYYNGL 40 (85)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445567799999999999888
No 242
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=24.49 E-value=2.9e+02 Score=22.53 Aligned_cols=52 Identities=12% Similarity=-0.020 Sum_probs=38.6
Q ss_pred chHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh
Q psy398 46 EEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFH 102 (162)
Q Consensus 46 ~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~ 102 (162)
++++++.-...+-+-|...||.++|..|....- - +...-.++-..|-.++..
T Consensus 161 ~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~-~----p~f~~e~V~~ai~~alE~ 212 (307)
T 2zu6_B 161 SVNHLVKEIDMLLKEYLLSGDISEAEHCLKELE-V----PHFHHELVYEAIIMVLES 212 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC-C----GGGHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcC-C----CcchHHHHHHHHHHHHcc
Confidence 478888888888888888999999999998886 2 233345566666666655
No 243
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=24.05 E-value=2.7e+02 Score=24.78 Aligned_cols=98 Identities=7% Similarity=0.099 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---hcCCCchHHHHHHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Q psy398 20 FYTEMKDANEKRLKELDLEHE---KNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLF 96 (162)
Q Consensus 20 ~~~~~~~~n~~~l~~Le~~lk---~Nlg~~~~eIr~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~i 96 (162)
++.+.++.....+++|...|. .+.-....-++.-..-+..=+.++.|.++.+..|..-+..+-.-+.-+||.-+..|
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~I 134 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRI 134 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888888888888888888 22222256677777778888899999999999999865256677888888888666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhh
Q psy398 97 RIAYFHGCDIQAMTAAIEKATELI 120 (162)
Q Consensus 97 Rv~~f~~~d~~~v~~~i~ka~~l~ 120 (162)
|+ .. ++......-|.|.+.-|
T Consensus 135 rv--Lq-~~l~~q~skIQRLE~dI 155 (491)
T 1m1j_A 135 KA--LQ-NSIQEQVVEMKRLEVDI 155 (491)
T ss_dssp HH--HH-HHHHHHHHHHHHHHHHH
T ss_pred HH--HH-HHHHHHHHHHHHHHHHH
Confidence 64 35 56666665566555544
No 244
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.83 E-value=76 Score=21.16 Aligned_cols=53 Identities=8% Similarity=0.009 Sum_probs=34.5
Q ss_pred HHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy398 54 WQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEK 115 (162)
Q Consensus 54 ~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~k 115 (162)
+..+|.=|+-.|+++.|+..|.-++ +.|.=.+..++=.... +-|..++.-|..
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~--------~qI~k~l~~~~d~~~r-~kW~~~~~ei~~ 67 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVL--------DQMNKYLYSVKDTHLR-QKWQQVWQEINV 67 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHH--------HHHHHHHHTCSCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHH--------HHHHHHHHhcCCHHHH-HhHHHHHHHHHH
Confidence 4568888999999999999999887 3343334433323333 556666555543
No 245
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=23.47 E-value=1.7e+02 Score=23.90 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=24.5
Q ss_pred HHHHHH-HHhhHhHHHhh-cCHHHHHHHHHHhcCCC
Q psy398 48 DQVSGI-WQAKLDYLCSI-GDRAEAFKLADSKFADK 81 (162)
Q Consensus 48 ~eIr~~-~~~~a~~~~~i-GD~~~A~~ay~~~~~~~ 81 (162)
.-||=| -+..+-||+.| ++.+.|++.-..++ |.
T Consensus 192 hPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AF-de 226 (268)
T 3efz_A 192 DPLYLATILNYTILKYDLLGNPEGAMKFANRAI-QA 226 (268)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hh
Confidence 345655 56788999987 68899888777777 55
No 246
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=23.14 E-value=84 Score=22.05 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVD 157 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld 157 (162)
.|-.++++|...-.+||.+|-+++-+
T Consensus 20 ArS~~~eAl~~Ak~g~fe~A~~~l~e 45 (105)
T 2e2a_A 20 ARSKLLEALKAAENGDFAKADSLVVE 45 (105)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 67788899999999999888877654
No 247
>1whr_A Hypothetical KIAA1002 protein; R3H domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.68.7.1
Probab=22.97 E-value=85 Score=22.60 Aligned_cols=50 Identities=14% Similarity=0.161 Sum_probs=34.3
Q ss_pred CCCcCHHHHHHHH--HHHHHHHHHHHHHHH---hcCCCc-------hHHHHHHHHhhHhHHH
Q psy398 13 GWKMDEKFYTEMK--DANEKRLKELDLEHE---KNMMDE-------EDQVSGIWQAKLDYLC 62 (162)
Q Consensus 13 ~~~~D~~~~~~~~--~~n~~~l~~Le~~lk---~Nlg~~-------~~eIr~~~~~~a~~~~ 62 (162)
|+.+|+.++++|+ .+....+.++|.+|. .|..-. ..--|+.-..+|+||-
T Consensus 12 ~~~vd~~l~eaL~~~~rdR~~il~lE~~i~~Fi~d~~~~~~ef~pmnSy~RllvHrvAe~yg 73 (124)
T 1whr_A 12 GIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFG 73 (124)
T ss_dssp CSCHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHCSSCCEEECCCCCHHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhCCCccceECCCCCHHHHHHHHHHHHHhC
Confidence 6899999999998 555667778888777 332200 1245777777888773
No 248
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=22.85 E-value=1.6e+02 Score=21.51 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCCChHHHHHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHhhhh
Q psy398 69 EAFKLADSKFADKTNPKSHRIDAVFT-------LFRIAYFHGCDIQAMTAAIEKATELIE 121 (162)
Q Consensus 69 ~A~~ay~~~~~~~~~s~g~kiD~~l~-------~iRv~~f~~~d~~~v~~~i~ka~~l~e 121 (162)
++..+|.++. -.+.|+..-+-|++. ..+.++.. +|+..-..+|.||...+.
T Consensus 7 ~~~~aY~~~~-v~tAsP~~Li~mLydgal~~l~~A~~aie~-~d~~~k~~~i~KA~~Ii~ 64 (145)
T 1vh6_A 7 NPYTAYQQNS-VNTATPGELTLMLYNGCLKFIRLAAQAIEN-DDMERKNENLIKAQNIIQ 64 (145)
T ss_dssp --------------CCTTHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHh-HhcCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Confidence 4677888877 677788888777654 34555666 899999999999998864
No 249
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=22.59 E-value=1.9e+02 Score=23.01 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=22.8
Q ss_pred HHHHH-HHhhHhHHHhh-cCHHHHHHHHHHhc
Q psy398 49 QVSGI-WQAKLDYLCSI-GDRAEAFKLADSKF 78 (162)
Q Consensus 49 eIr~~-~~~~a~~~~~i-GD~~~A~~ay~~~~ 78 (162)
-||=| -+..+-||+.| ++.+.|++.-..++
T Consensus 172 PirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 172 PIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45555 56788999988 78999888777766
No 250
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=22.47 E-value=87 Score=22.13 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVD 157 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld 157 (162)
.|-.++++|...-.+||.+|-+++-+
T Consensus 22 Ars~~~eAl~~Ak~gdfe~A~~~l~e 47 (109)
T 3k1s_A 22 ARSFAMEALQFAKQGKMAEADEAMVK 47 (109)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 67788899999999999888887654
No 251
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=22.39 E-value=1.3e+02 Score=17.73 Aligned_cols=16 Identities=31% Similarity=0.318 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHh
Q psy398 87 HRIDAVFTLFRIAYFH 102 (162)
Q Consensus 87 ~kiD~~l~~iRv~~f~ 102 (162)
--||+.|+++|--+..
T Consensus 5 iSiDLTFHlLR~miem 20 (40)
T 2rmf_A 5 LSIDLTFHLLRTLLEL 20 (40)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHH
Confidence 4589999999987776
No 252
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=22.30 E-value=90 Score=21.82 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHhhhhcHHHHHHHhHh
Q psy398 132 NKLKAYEGVYCLAIRQYCRAAELFVD 157 (162)
Q Consensus 132 nrLKvy~gl~~l~~R~fk~AA~lfld 157 (162)
.|-.++++|...-.+||.+|-+++-+
T Consensus 18 Ars~~~eAl~~Ak~g~fe~A~~~l~e 43 (103)
T 1wcr_A 18 ARSLAYAALKQAKQGDFAAAKAMMDQ 43 (103)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 67788999999999999888887654
No 253
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=22.12 E-value=73 Score=25.78 Aligned_cols=27 Identities=7% Similarity=-0.175 Sum_probs=23.4
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKF 78 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~ 78 (162)
-++.-+|+-|++.|++++|+++|.++.
T Consensus 259 ~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 259 FALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 466778888999999999999999987
No 254
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=22.01 E-value=88 Score=21.92 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=19.9
Q ss_pred HHhhHhHHHhhcCHHHHHHHHHHhc
Q psy398 54 WQAKLDYLCSIGDRAEAFKLADSKF 78 (162)
Q Consensus 54 ~~~~a~~~~~iGD~~~A~~ay~~~~ 78 (162)
+.-+|+.+.+-|.+++|++|+.++.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 3457888888999999999887754
No 255
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=21.49 E-value=9.3 Score=31.59 Aligned_cols=51 Identities=10% Similarity=0.076 Sum_probs=40.2
Q ss_pred hcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhh-c-------CCCchhh
Q psy398 64 IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEG-I-------SGGDWSA 130 (162)
Q Consensus 64 iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~~~d~~~v~~~i~ka~~l~e~-~-------~ggDW~r 130 (162)
-+|++||.+.|..+. ||.+ ||+.- .||+.|.+.|+..+..... + ++|||..
T Consensus 43 A~d~~NAkei~eAAe-------Ghvl--------vGVLs-kny~tve~AV~~mk~y~~~~~~avSVGLGaGDP~Q 101 (275)
T 3m6y_A 43 ANNIENAKDIFEAAE-------GYVV--------VGVLS-KDYPTVEEAVTAMKAYGKEIDDAVSIGLGAGDNRQ 101 (275)
T ss_dssp CSSHHHHHHHHHHTT-------TCEE--------EEEEG-GGSSSHHHHHHHHHHHHHHTTTCEEEECCTTCGGG
T ss_pred cCChhhHHHHHHHhc-------CcEE--------EEEEe-CCCCCHHHHHHHHHHHHHhCCCceEEecCCCCHHH
Confidence 379999999999999 6655 77777 8999999999888887544 1 4788763
No 256
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=20.77 E-value=86 Score=17.90 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHH-hcCCCchHHHH
Q psy398 24 MKDANEKRLKELDLEHE-KNMMDEEDQVS 51 (162)
Q Consensus 24 ~~~~n~~~l~~Le~~lk-~Nlg~~~~eIr 51 (162)
|.++|.+-.+.+++--+ ++.- +++||
T Consensus 5 mRrKn~a~qqDIddlkrQN~~L--e~Qir 31 (34)
T 1a93_B 5 MRRKNDTHQQDIDDLKRQNALL--EQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HhhhhHhhHhhHHHHHHHHHHH--HHHHH
Confidence 56666666666655444 5556 66666
No 257
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=20.63 E-value=3.1e+02 Score=23.18 Aligned_cols=102 Identities=13% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHhhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHH-------------------------------HHHH
Q psy398 52 GIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLF-------------------------------RIAY 100 (162)
Q Consensus 52 ~~~~~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~i-------------------------------Rv~~ 100 (162)
..|...+.|+.+.||.+.|.+.|.++. .. +....+=+....+ .+-+
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi-~~--P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~ 290 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGI-EM--SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRI 290 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-HH--CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hC--CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHhhhhhcCCCchhhhhHHHHHHHHHHhhhh-cHHHHHHHhHhhc
Q psy398 101 FHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEGVYCLAIR-QYCRAAELFVDVI 159 (162)
Q Consensus 101 f~~~d~~~v~~~i~ka~~l~e~~~ggDW~rrnrLKvy~gl~~l~~R-~fk~AA~lfld~~ 159 (162)
-+ .++..=...+++|..+.+. .........+-+..+..-...+ +++.|-.+|-.++
T Consensus 291 ~y-~~~~~r~~~~~~AR~i~~~--A~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 291 NH-LNYVLKKRGLELFRKLFIE--LGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp HH-HHHHHHHHCHHHHHHHHHH--HTTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HH-HHHHHHcCCHHHHHHHHHH--hhCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
No 258
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=20.11 E-value=75 Score=18.56 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHh
Q psy398 89 IDAVFTLFRIAYFH 102 (162)
Q Consensus 89 iD~~l~~iRv~~f~ 102 (162)
||+.|+++|=-+..
T Consensus 5 lDLTFhlLR~m~em 18 (38)
T 2l27_B 5 LDLTFNLLREVLEI 18 (38)
T ss_dssp SHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 79999999977665
No 259
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.10 E-value=2.5e+02 Score=22.93 Aligned_cols=42 Identities=10% Similarity=-0.009 Sum_probs=30.8
Q ss_pred hhHhHHHhhcCHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHh
Q psy398 56 AKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFH 102 (162)
Q Consensus 56 ~~a~~~~~iGD~~~A~~ay~~~~~~~~~s~g~kiD~~l~~iRv~~f~ 102 (162)
.+-+-|+.+||.++|..+...+- .+...-.++-.+|..++..
T Consensus 8 ~ii~EYf~~~d~~Ea~~~l~el~-----~p~~~~~~v~~~i~~aldr 49 (307)
T 2zu6_B 8 PIIQEYFEHGDTNEVAEMLRDLN-----LGEMKSGVPVLAVSLALEG 49 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTC-----CGGGGGGHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCHHHHHHHHHHhC-----CcchHHHHHHHHHHHHhCC
Confidence 34455667899999999988754 3346667777778888776
Done!