RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy398
(162 letters)
>gnl|CDD|220821 pfam10602, RPN7, 26S proteasome subunit RPN7. RPN7 (known as the
non ATPase regulatory subunit 6 in higher eukaryotes) is
one of the lid subunits of the 26S proteasome and has
been shown in Saccharomyces cerevisiae to be required
for structural integrity. The 26S proteasome is is
involved in the ATP-dependent degradation of
ubiquitinated proteins.
Length = 174
Score = 108 bits (271), Expect = 2e-30
Identities = 54/146 (36%), Positives = 77/146 (52%), Gaps = 9/146 (6%)
Query: 17 DEKFYTEMKDANEKRLKELDLE---HEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKL 73
DE + E++ NE+ L+ELD E ++N+ EE + ++ IGD A K
Sbjct: 1 DEAWVEELRKKNEEELEELDAELKDAKENLGKEE--IRRALLDLAEHYAKIGDLENALK- 57
Query: 74 ADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNK 133
A S+ + H+ID L R+ F D ++ IEKA LIE GGDW RN+
Sbjct: 58 AYSRAREYCTSLGHKIDMCLNLIRVGIFFN-DWDHVSKYIEKAKSLIE--KGGDWERRNR 114
Query: 134 LKAYEGVYCLAIRQYCRAAELFVDVI 159
LK YEG+ LAIR + AA+LF+D +
Sbjct: 115 LKVYEGLALLAIRDFKEAAKLFLDSL 140
>gnl|CDD|227514 COG5187, RPN7, 26S proteasome regulatory complex component,
contains PCI domain [Posttranslational modification,
protein turnover, chaperones].
Length = 412
Score = 109 bits (273), Expect = 6e-29
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 12/169 (7%)
Query: 1 MAPYYKEVCEEFGW-------KMDEKFYTEMKDANEKRLKELDLE-HEKNMMDEEDQVSG 52
MAP YK + E+ K D + NE++++ELD EK + E + S
Sbjct: 57 MAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSE 116
Query: 53 IWQAKLDYLCSIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAA 112
+ +Y C I D F+ D + +ID R+ +G D + + +
Sbjct: 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDAMS-TGLKIDVFLCKIRLGLIYG-DRKVVEES 174
Query: 113 IEKATELIEGISGGDWSARNKLKAYEGVYCLAIRQYCRAAELFVDVIRS 161
+E A ++IE GGDW RN+ K Y+G++ + R + AA L D++ +
Sbjct: 175 LEVADDIIE--KGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221
>gnl|CDD|234930 PRK01261, aroD, 3-dehydroquinate dehydratase; Provisional.
Length = 229
Score = 27.9 bits (62), Expect = 2.2
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 4 YYKEVCEEFGWKMDEKFYTEMKDANEKRLKEL--DLEHEKNMMDEEDQVSGIWQAKLDYL 61
++K++ E M E+F + K ++K L E+ DL H+ ++ E + +S + + +DY+
Sbjct: 28 FFKDIKE-----MKERF--KTKVLSDKNLYEIRFDLFHDHSIESEPEIISALNEMDIDYI 80
Query: 62 --CSIGDRAEAFKLADSKFA 79
D + ++ A K
Sbjct: 81 FTYRGVDARKYYETAIDKMP 100
>gnl|CDD|180570 PRK06457, PRK06457, pyruvate dehydrogenase; Provisional.
Length = 549
Score = 27.5 bits (61), Expect = 3.8
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 17 DEKFYTEMKDANEKRLKELD 36
+KFY E+K E L +
Sbjct: 318 SDKFYEELKGKKEDWLDSIS 337
>gnl|CDD|239892 cd04445, DEP_PLEK1, DEP (Dishevelled, Egl-10, and Pleckstrin)
domain found in pleckstrin 1-like proteins. Pleckstrin
1 plays a role in cell spreading and reorganization of
actin cytoskeleton in platelets and leukocytes. Its
activity is highly regulated by phosphorylation, mainly
by protein kinase C. Pleckstrin-like proteins contain a
central DEP domain, flanked by 2 PH (pleckstrin
homology) domains.
Length = 99
Score = 26.0 bits (57), Expect = 4.9
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
Query: 21 YTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCS---IGDRAEAFKLADS 76
Y MKD EK +KEL+LE +K + + S + +D+L S + +R E LA S
Sbjct: 6 YLSMKDP-EKGIKELNLEKDKKVFNHCFTGSCV----IDWLVSNQSVRNRQEGLMLASS 59
>gnl|CDD|234307 TIGR03676, aRF1/eRF1, peptide chain release factor 1, archaeal and
eukaryotic forms. Directs the termination of nascent
peptide synthesis (translation) in response to the
termination codons UAA, UAG and UGA. This model
identifies both archaeal (aRF1) and eukaryotic (eRF1) of
the protein. Also known as translation termination
factor 1 [Protein synthesis, Translation factors].
Length = 357
Score = 26.4 bits (59), Expect = 6.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 23 EMKDANEKRLKELDLEHEKNMMDE 46
E+ + E LK+L+ EK +M+
Sbjct: 254 ELVEKAEDLLKDLEYMKEKKLMER 277
>gnl|CDD|153336 cd07652, F-BAR_Rgd1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae
Rho GTPase activating protein Rgd1 and similar proteins.
F-BAR domains are dimerization modules that bind and
bend membranes and are found in proteins involved in
membrane dynamics and actin reorganization.
Saccharomyces cerevisiae Rgd1 is a GTPase activating
protein (GAP) with activity towards Rho3p and Rho4p,
which are involved in bud growth and cytokinesis,
respectively. At low pH, S. cerevisiae Rgd1 is required
for cell survival and the activation of the protein
kinase C pathway, which is important in cell integrity
and the maintenance of cell shape. It contains an
N-terminal F-BAR domain and a C-terminal Rho GAP domain.
The F-BAR domain of S. cerevisiae Rgd1 binds to
phosphoinositides and plays an important role in the
localization of the protein to the bud tip/neck during
the cell cycle. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 234
Score = 26.2 bits (58), Expect = 7.5
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 4/63 (6%)
Query: 26 DANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFADKTNPK 85
+ + K +KE EK + D E +A+ D L D E K D K K
Sbjct: 103 EKSRKSIKETGKRAEKKVQDAEAAAEKA-KARYDSLA---DDLERVKTGDPGKKLKFGLK 158
Query: 86 SHR 88
++
Sbjct: 159 GNK 161
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 26.6 bits (58), Expect = 8.0
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 9/48 (18%)
Query: 5 YKEVCEEFGWKMDEKFYTEMKDANEKRLKEL-----DLEHEKNMMDEE 47
+V EE +++DE E ++A E + + L + + EK DEE
Sbjct: 237 GDKVAEEEEFELDE----EHEEAEEDKKEALEKIGAEGDEEKFKFDEE 280
>gnl|CDD|185613 PTZ00433, PTZ00433, tyrosine aminotransferase; Provisional.
Length = 412
Score = 26.3 bits (58), Expect = 9.4
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 3 PYYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHEKNMMD 45
P+Y+ VC+ +G +M +FY ++ E DL+ + ++D
Sbjct: 139 PHYETVCKAYGIEM--RFYN----CRPEKDWEADLDEIRRLVD 175
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.135 0.407
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,365,766
Number of extensions: 753804
Number of successful extensions: 839
Number of sequences better than 10.0: 1
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 23
Length of query: 162
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 73
Effective length of database: 6,990,096
Effective search space: 510277008
Effective search space used: 510277008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (24.9 bits)