RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy398
         (162 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 23/138 (16%), Positives = 45/138 (32%), Gaps = 22/138 (15%)

Query: 20  FYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCSIGDRAEAFKLADSKFA 79
             +++++   K L E       +  DE    + +   K  +L  +    E          
Sbjct: 29  IASQLQEQFNKILPEPTEGFAAD--DEPTTPAELV-GK--FLGYVSSLVEP--------- 74

Query: 80  DKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKATELIEGISGGDWSARNKLKAYEG 139
            K       ++   T F   Y  G DI A+ A + +  +            +  +K Y  
Sbjct: 75  SKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV------KTKELIKNYIT 128

Query: 140 VYCLAIRQYCRAAE--LF 155
              +A R + + +   LF
Sbjct: 129 ARIMAKRPFDKKSNSALF 146


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 28.6 bits (63), Expect = 0.73
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 14  WKMDEKFYTEMKDANEKRLKELDLEHEKNMMDE 46
           W+ +++   +  DA  K +++   E  K  ++E
Sbjct: 90  WREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122



 Score = 25.1 bits (54), Expect = 9.9
 Identities = 8/43 (18%), Positives = 16/43 (37%), Gaps = 1/43 (2%)

Query: 6   KEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHEKNMMDEED 48
           ++   E   K  E++     +  EK  K  +   +K    + D
Sbjct: 109 EQEWREKAKKDLEEWNQRQSEQVEKN-KINNRIADKAFYQQPD 150


>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation,
           tRNA-binding, DNA-binding domain, four-helix
           aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP;
           3.02A {Escherichia coli}
          Length = 795

 Score = 29.0 bits (66), Expect = 0.78
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 103 GCDIQAMTAAIEKATELIEGISGG 126
           G D      A+E+AT L+  I GG
Sbjct: 363 GVDPALQHKAMERATRLLIDICGG 386


>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta
           homodimer, ligase; HET: FYA; 2.50A {Thermus
           thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1
           d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B
           2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*
          Length = 785

 Score = 28.6 bits (65), Expect = 1.1
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 103 GCDIQAMTAAIEKATELIEGISGG 126
           G D      A  +A  L++ ++G 
Sbjct: 363 GVDPLGQVPAQRRALSLLQALAGA 386


>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer,
           phenylalanine, aminoacyl-tRNA synthetase, ATP-binding,
           cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus
           haemolyticus} PDB: 2rhs_B*
          Length = 795

 Score = 27.9 bits (63), Expect = 1.5
 Identities = 5/24 (20%), Positives = 14/24 (58%)

Query: 103 GCDIQAMTAAIEKATELIEGISGG 126
           G   + +  A+++A  L++ ++ G
Sbjct: 367 GIATEFVDEAVDRACYLLQELASG 390


>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
           streptolydigin, antibiotic, transcription regulation;
           HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
           PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
           2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
           3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
          Length = 1524

 Score = 27.4 bits (61), Expect = 2.4
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 4/44 (9%)

Query: 5   YKEVCEEFGWKMDEKFYTEM-KDANEKRLKELDLEHEKNMMDEE 47
            + V               M  +A ++ LKELDLE  +  + EE
Sbjct: 440 VRNVVRVVE---SYDIDARMGAEAIQQLLKELDLEALEKELLEE 480


>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
           oxazole, oxadiazole, endoca degradation, membrane
           protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
           2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
           2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
           3qj9_A* 3qkv_A*
          Length = 573

 Score = 25.9 bits (57), Expect = 8.2
 Identities = 4/22 (18%), Positives = 9/22 (40%)

Query: 116 ATELIEGISGGDWSARNKLKAY 137
             +L++ +  G+ S       Y
Sbjct: 73  LLQLVQKLQSGELSPEAVFFTY 94


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0735    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,623,812
Number of extensions: 149862
Number of successful extensions: 445
Number of sequences better than 10.0: 1
Number of HSP's gapped: 440
Number of HSP's successfully gapped: 32
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.2 bits)