RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy398
         (162 letters)



>d1jjcb6 b.153.1.1 (B:191-399) B3/B4 domain of PheRS, PheT {Thermus
           thermophilus [TaxId: 274]}
          Length = 209

 Score = 26.6 bits (58), Expect = 1.2
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 100 YFHGCDIQAMTAAIEKATELIEGISGGDWS 129
           +  G D      A  +A  L++ ++G   +
Sbjct: 170 FERGVDPLGQVPAQRRALSLLQALAGARVA 199


>d1ra6a_ e.8.1.4 (A:) Viral RNA polymerase {Poliovirus type 1,
           strain Mahoney [TaxId: 12080]}
          Length = 461

 Score = 25.7 bits (56), Expect = 2.7
 Identities = 11/102 (10%), Positives = 29/102 (28%), Gaps = 16/102 (15%)

Query: 4   YYKEVCEEFGWKMDEKFYTEMKDANEKRLKELDLEHEKNMMDEEDQVSGIWQAKLDYLCS 63
              +  +++G  M      +         + +         DE  +   +    +  +  
Sbjct: 342 LLAQSGKDYGLTMT--PADKSATFETVTWENVTFLKRFFRADE--KYPFLIHPVMP-MKE 396

Query: 64  IGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCD 105
           I +               T    +  D V +L  +A+ +G +
Sbjct: 397 IHESIR-----------WTKDPRNTQDHVRSLCLLAWHNGEE 427


>d1gaka_ a.19.1.1 (A:) SP18 {Green abalone (Haliotis fulgens)
          [TaxId: 6456]}
          Length = 137

 Score = 24.9 bits (54), Expect = 4.0
 Identities = 5/30 (16%), Positives = 11/30 (36%)

Query: 5  YKEVCEEFGWKMDEKFYTEMKDANEKRLKE 34
            +   +  W +   F   +K  N +R+  
Sbjct: 29 LVKRFRDMRWNLGPGFVFLLKKVNRERMMR 58


>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase
           {Thermobifida fusca [TaxId: 2021]}
          Length = 298

 Score = 25.2 bits (54), Expect = 4.8
 Identities = 6/28 (21%), Positives = 12/28 (42%)

Query: 1   MAPYYKEVCEEFGWKMDEKFYTEMKDAN 28
           +  Y   V ++F  +    F+T +  A 
Sbjct: 87  ILRYINFVADKFDLRSGITFHTTVTAAA 114


>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae
           [TaxId: 727]}
          Length = 164

 Score = 24.4 bits (52), Expect = 6.3
 Identities = 10/54 (18%), Positives = 15/54 (27%)

Query: 63  SIGDRAEAFKLADSKFADKTNPKSHRIDAVFTLFRIAYFHGCDIQAMTAAIEKA 116
            +G+  E F L  +  AD           V  +F       C         + A
Sbjct: 17  QVGEIVENFILVGNDLADVALNDFASKRKVLNIFPSIDTGVCATSVRKFNQQAA 70


>d1kxpd3 a.126.1.1 (D:405-473) Vitamin D binding protein {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 69

 Score = 22.9 bits (49), Expect = 8.0
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 2  APYYKEVCEEFGWKMDEKFYTEMKDANEKRLKEL 35
          A Y +    E+  K+ E+   ++ DA  K L +L
Sbjct: 4  ADYSENTFTEYKKKLAERLKAKLPDATPKELAKL 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0408    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 637,222
Number of extensions: 28029
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 102
Number of HSP's successfully gapped: 17
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)