BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3981
(276 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 95/160 (59%), Gaps = 8/160 (5%)
Query: 5 YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 64
Y EG L C DY+++D RS ++ +F P+++I + Y+ IV +VS HEK+M
Sbjct: 176 YTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAA 235
Query: 65 QAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-INPL 123
AK++N LR Q+G +AE++LAK++++ +S + L+W+PY V+ +E + P
Sbjct: 236 MAKRLNAKELRKA-QAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPY 294
Query: 124 ITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLT 163
+FAKA+A++NP++Y++ HP + +A+ T
Sbjct: 295 AAQLPVMFAKASAIHNPMIYSVS------HPKFREAISQT 328
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 5/61 (8%)
Query: 180 YIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA---PTMVLNCFYETWTLGPFMCELYGML 236
Y+F TK+L+TP+N+ ++NLAFSDF FS+ P M ++CF + W G C++YG +
Sbjct: 56 YLFTKTKSLQTPANMFIINLAFSDFT--FSLVNGFPLMTISCFLKKWIFGFAACKVYGFI 113
Query: 237 G 237
G
Sbjct: 114 G 114
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 95/160 (59%), Gaps = 8/160 (5%)
Query: 5 YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 64
Y EG L C DY+++D RS ++ +F P+++I + Y+ IV +VS HEK+M
Sbjct: 177 YTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAA 236
Query: 65 QAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-INPL 123
AK++N LR Q+G +AE++LAK++++ +S + L+W+PY V+ +E + P
Sbjct: 237 MAKRLNAKELRKA-QAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPY 295
Query: 124 ITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLT 163
+FAKA+A++NP++Y++ HP + +A+ T
Sbjct: 296 AAQLPVMFAKASAIHNPMIYSVS------HPKFREAISQT 329
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 5/61 (8%)
Query: 180 YIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA---PTMVLNCFYETWTLGPFMCELYGML 236
Y+F TK+L+TP+N+ ++NLAFSDF FS+ P M ++CF + W G C++YG +
Sbjct: 57 YLFTKTKSLQTPANMFIINLAFSDFT--FSLVNGFPLMTISCFLKKWIFGFAACKVYGFI 114
Query: 237 G 237
G
Sbjct: 115 G 115
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 18/143 (12%)
Query: 5 YVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFV-PLILIIYAYYFIVRAVSVHEKQ 61
Y+PEG +CG DY T ++ ++ S++I Y F V+F+ PLI+I + Y +V V Q
Sbjct: 179 YIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ 237
Query: 62 MREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEM-VEI 120
+E A + AE ++ ++ ++ + + + W PY + F +
Sbjct: 238 QQESA-------------TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDF 284
Query: 121 NPLITIWGSVFAKANAVYNPIVY 143
P+ + FAK +AVYNP++Y
Sbjct: 285 GPIFMTIPAFFAKTSAVYNPVIY 307
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 148 QYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMM 207
QY P + L M L + N + +Y+ + K LRTP N +++NLA +D M+
Sbjct: 29 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV 88
Query: 208 FSMAPTMVLNCFYETWTLGPFMCELYGMLG 237
F T + + + GP C L G
Sbjct: 89 FGGFTTTLYTSLHGYFVFGPTGCNLEGFFA 118
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 18/143 (12%)
Query: 5 YVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFV-PLILIIYAYYFIVRAVSVHEKQ 61
Y+PEG +CG DY T ++ ++ S++I Y F V+F+ PLI+I + Y +V V Q
Sbjct: 178 YIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ 236
Query: 62 MREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEM-VEI 120
+E A + AE ++ ++ ++ + + + W PY + F +
Sbjct: 237 QQESA-------------TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDF 283
Query: 121 NPLITIWGSVFAKANAVYNPIVY 143
P+ + FAK +AVYNP++Y
Sbjct: 284 GPIFMTIPAFFAKTSAVYNPVIY 306
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 148 QYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMM 207
QY P + L M L + N + +Y+ + K LRTP N +++NLA +D M+
Sbjct: 28 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV 87
Query: 208 FSMAPTMVLNCFYETWTLGPFMCELYGMLG 237
F T + + + GP C L G
Sbjct: 88 FGGFTTTLYTSLHGYFVFGPTGCNLEGFFA 117
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 18/143 (12%)
Query: 5 YVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFV-PLILIIYAYYFIVRAVSVHEKQ 61
Y+PEG +CG DY T ++ ++ S++I Y F V+F+ PLI+I + Y +V V Q
Sbjct: 179 YIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ 237
Query: 62 MREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-I 120
+E A AE ++ ++ ++ + + + W PY + F
Sbjct: 238 QQESATTQK-------------AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCF 284
Query: 121 NPLITIWGSVFAKANAVYNPIVY 143
P+ + FAK +AVYNP++Y
Sbjct: 285 GPIFMTIPAFFAKTSAVYNPVIY 307
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 148 QYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMM 207
QY P + L M L + N + +Y+ + K LRTP N +++NLA +D M+
Sbjct: 29 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV 88
Query: 208 FSMAPTMVLNCFYETWTLGPFMCELYGMLG 237
F T + + + GP C L G
Sbjct: 89 FGGFTTTLYTSLHGYFVFGPTGCNLQGFFA 118
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 18/143 (12%)
Query: 5 YVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFV-PLILIIYAYYFIVRAVSVHEKQ 61
Y+PEG +CG DY T ++ ++ S++I Y F V+F+ PLI+I + Y +V V Q
Sbjct: 179 YIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ 237
Query: 62 MREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-I 120
+E A AE ++ ++ ++ + + + W PY + F
Sbjct: 238 QQESATTQK-------------AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCF 284
Query: 121 NPLITIWGSVFAKANAVYNPIVY 143
P+ + FAK +AVYNP++Y
Sbjct: 285 GPIFMTIPAFFAKTSAVYNPVIY 307
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 148 QYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMM 207
QY P + L M L + N + +Y+ + K LRTP N +++NLA +D M+
Sbjct: 29 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV 88
Query: 208 FSMAPTMVLNCFYETWTLGPFMCELYGMLG 237
F T + + + GP C L G
Sbjct: 89 FGGFTTTLYTSLHGYFVFGPTGCNLEGFFA 118
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 18/143 (12%)
Query: 5 YVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFV-PLILIIYAYYFIVRAVSVHEKQ 61
Y+PEG +CG DY T ++ ++ S++I Y F V+F+ PLI+I + Y +V V Q
Sbjct: 178 YIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ 236
Query: 62 MREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-I 120
+E A AE ++ ++ ++ + + + W PY + F
Sbjct: 237 QQESATTQK-------------AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCF 283
Query: 121 NPLITIWGSVFAKANAVYNPIVY 143
P+ + FAK +AVYNP++Y
Sbjct: 284 GPIFMTIPAFFAKTSAVYNPVIY 306
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 148 QYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMM 207
QY P + L M L + N + +Y+ + K LRTP N +++NLA +D M+
Sbjct: 28 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV 87
Query: 208 FSMAPTMVLNCFYETWTLGPFMCELYGMLG 237
F T + + + GP C L G
Sbjct: 88 FGGFTTTLYTSLHGYFVFGPTGCNLEGFFA 117
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 18/143 (12%)
Query: 5 YVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFV-PLILIIYAYYFIVRAVSVHEKQ 61
Y+PEG +CG DY T ++ ++ S++I Y F V+F+ PLI+I + Y +V V Q
Sbjct: 179 YIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQ 237
Query: 62 MREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-I 120
+E A AE ++ ++ ++ + + + W PY + F
Sbjct: 238 QQESATTQK-------------AEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCF 284
Query: 121 NPLITIWGSVFAKANAVYNPIVY 143
P+ + FAK +AVYNP++Y
Sbjct: 285 GPIFMTIPAFFAKTSAVYNPVIY 307
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 148 QYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMM 207
QY P + L M L + N + +Y+ + K LRTP N +++NLA +D M+
Sbjct: 29 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV 88
Query: 208 FSMAPTMVLNCFYETWTLGPFMCELYGMLG 237
F T + + + GP C L G
Sbjct: 89 FGGFTTTLYTSLHGYFVFGPTGCNLEGFFA 118
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 19 LTKDWHHRSYLIFYGFFV-YFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSG 77
L +D +Y++++ FF VPL+L++ Y I A KQM Q A
Sbjct: 167 LFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAARRQLKQMESQPLPGERA----- 221
Query: 78 DQSGTSAEIKLAKVALMTISLWFLAWTPYLVIN-FGGILEMVEINPLITIW-GSVFAKAN 135
+S E+ AK A + L+ L W P +IN F PL ++ V A N
Sbjct: 222 -RSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLAHTN 280
Query: 136 AVYNPIVYAIRYQ 148
+V NP +YA R +
Sbjct: 281 SVVNPFIYAYRIR 293
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 19 LTKDWHHRSYLIFYGFFV-YFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSG 77
L +D +Y++++ FF VPL+L++ Y I A KQM Q A
Sbjct: 167 LFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERA----- 221
Query: 78 DQSGTSAEIKLAKVALMTISLWFLAWTPYLVIN-FGGILEMVEINPLITIW-GSVFAKAN 135
+S E+ AK + + L+ L W P +IN F PL ++ V + N
Sbjct: 222 -RSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTN 280
Query: 136 AVYNPIVYAIRYQ 148
+V NP +YA R +
Sbjct: 281 SVVNPFIYAYRIR 293
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 9/133 (6%)
Query: 19 LTKDWHHRSYLIFYGFFV-YFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSG 77
L +D +Y++++ FF VPL+L++ Y I A KQM Q A
Sbjct: 167 LFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERA----- 221
Query: 78 DQSGTSAEIKLAKVALMTISLWFLAWTPYLVIN-FGGILEMVEINPLITIW-GSVFAKAN 135
+S E+ AK + + L+ L W P +IN F PL ++ V + N
Sbjct: 222 -RSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTN 280
Query: 136 AVYNPIVYAIRYQ 148
+V NP +YA R +
Sbjct: 281 SVVNPFIYAYRIR 293
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 63/127 (49%), Gaps = 11/127 (8%)
Query: 17 DYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRS 76
D++T +R+Y I +++PL+++I+ A+ V+ ++ +EQ +K++ A+ R
Sbjct: 170 DFVT----NRAYAIASSIISFYIPLLIMIFV------ALRVY-REAKEQIRKIDRASKRK 218
Query: 77 GDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANA 136
+ E K K + + ++ L W P+ ++N + + + + + AN+
Sbjct: 219 TSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANS 278
Query: 137 VYNPIVY 143
NPI+Y
Sbjct: 279 AMNPIIY 285
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 156 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMV 215
W + L M + + + GN +V+ T+ L+T +N+ + +LA +D + + P
Sbjct: 10 WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGA 69
Query: 216 LNCFYETWTLGPFMCELYGML 236
TW G F+CEL+ L
Sbjct: 70 TLVVRGTWLWGSFLCELWTSL 90
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 154 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 213
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 179 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 238
Query: 214 MVLNCFYETWTLGPFMCELY 233
+ +TWT G F CE +
Sbjct: 239 GAAHILTKTWTFGNFWCEFW 258
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 71/166 (42%), Gaps = 22/166 (13%)
Query: 25 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSA 84
+++Y I ++VPL+++++ Y + + +++ + + +V L +Q G +
Sbjct: 345 NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTG 404
Query: 85 ------------EIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFA 132
E K K + + + L W P+ ++N +++ I + I +
Sbjct: 405 HGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIG 464
Query: 133 KANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGTMSMV--GNG 176
N+ +NP++Y P + +Q L +CL S+ GNG
Sbjct: 465 YVNSGFNPLIYC----RSPDFRIAFQEL----LCLRRSSLKAYGNG 502
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 77/182 (42%), Gaps = 28/182 (15%)
Query: 9 GNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKK 68
N T C D+ T +++Y I ++VPL+++++ Y + + +++ + +
Sbjct: 186 ANETCC--DFFT----NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGR 239
Query: 69 MNVATLRSGDQSGTSA------------EIKLAKVALMTISLWFLAWTPYLVINFGGILE 116
+V L +Q G + E K K + + + L W P+ ++N +++
Sbjct: 240 FHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 299
Query: 117 MVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICL--GTMSMVG 174
I + I + N+ +NP++Y P + +Q L +CL ++ G
Sbjct: 300 DNLIRKEVYILLNWIGYVNSGFNPLIYC----RSPDFRIAFQEL----LCLRRSSLKAYG 351
Query: 175 NG 176
NG
Sbjct: 352 NG 353
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 154 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 213
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 30 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 89
Query: 214 MVLNCFYETWTLGPFMCELY 233
+ + WT G F CE +
Sbjct: 90 GAAHILMKMWTFGNFWCEFW 109
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 40.8 bits (94), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 77/182 (42%), Gaps = 28/182 (15%)
Query: 9 GNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKK 68
N T C D+ T +++Y I ++VPL+++++ Y + + +++ + +
Sbjct: 163 ANETCC--DFFT----NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGR 216
Query: 69 MNVATLRSGDQSGTSA------------EIKLAKVALMTISLWFLAWTPYLVINFGGILE 116
+V L +Q G + E K K + + + L W P+ ++N +++
Sbjct: 217 FHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 276
Query: 117 MVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICL--GTMSMVG 174
I + I + N+ +NP++Y P + +Q L +CL ++ G
Sbjct: 277 DNLIRKEVYILLNWIGYVNSGFNPLIYC----RSPDFRIAFQEL----LCLRRSSLKAYG 328
Query: 175 NG 176
NG
Sbjct: 329 NG 330
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 154 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 213
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 7 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 66
Query: 214 MVLNCFYETWTLGPFMCELY 233
+ + WT G F CE +
Sbjct: 67 GAAHILMKMWTFGNFWCEFW 86
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%)
Query: 154 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 213
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 2 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 61
Query: 214 MVLNCFYETWTLGPFMCELY 233
+ +TWT G F CE +
Sbjct: 62 GAAHILTKTWTFGNFWCEFW 81
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/154 (19%), Positives = 68/154 (44%), Gaps = 26/154 (16%)
Query: 25 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSA 84
+++Y I ++VPL+++++ Y + ++ + Q +K++ L+
Sbjct: 168 NQAYAIASSIVSFYVPLVIMVFVYSRVF-------QEAKRQLQKIDKFCLK--------- 211
Query: 85 EIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYA 144
E K K + + + L W P+ ++N +++ I + I + N+ +NP++Y
Sbjct: 212 EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC 271
Query: 145 IRYQYPPMHPLWYQALGLTMICL--GTMSMVGNG 176
P + +Q L +CL ++ GNG
Sbjct: 272 ----RSPDFRIAFQEL----LCLRRSSLKAYGNG 297
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 71/166 (42%), Gaps = 22/166 (13%)
Query: 25 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSA 84
+++Y I ++VPL+++++ Y + + +++ + + +V L +Q G +
Sbjct: 197 NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTG 256
Query: 85 ------------EIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFA 132
E K K + + + L W P+ ++N +++ I + I +
Sbjct: 257 HGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIG 316
Query: 133 KANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICL--GTMSMVGNG 176
N+ +NP++Y P + +Q L +CL ++ GNG
Sbjct: 317 YVNSGFNPLIYC----RSPDFRIAFQEL----LCLRRSSLKAYGNG 354
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 154 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 213
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 31 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 90
Query: 214 MVLNCFYETWTLGPFMCELY 233
+ + WT G F CE +
Sbjct: 91 GAAHILMKMWTFGNFWCEFW 110
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 154 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 213
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 38 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 97
Query: 214 MVLNCFYETWTLGPFMCELY 233
+ + WT G F CE +
Sbjct: 98 GAAHILMKMWTFGNFWCEFW 117
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 154 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 213
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 38 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 97
Query: 214 MVLNCFYETWTLGPFMCELY 233
+ + WT G F CE +
Sbjct: 98 GAAHILMKMWTFGNFWCEFW 117
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 60 KQMREQAKKMNVATLRSGDQSGTS---AEIKLAKVALMTISLWFLAWTPYLVINFGGILE 116
Q +AK++ + T R+G E K K + + + L W P+ ++N +++
Sbjct: 377 NQTPNRAKRV-ITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 435
Query: 117 MVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGTMSMV--G 174
I + I + N+ +NP++Y P + +Q L +CL S+ G
Sbjct: 436 DNLIRKEVYILLNWIGYVNSGFNPLIYC----RSPDFRIAFQEL----LCLRRSSLKAYG 487
Query: 175 NG 176
NG
Sbjct: 488 NG 489
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 154 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPT 213
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 37 EVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPF 96
Query: 214 MVLNCFYETWTLGPFMCELY 233
+ + WT G F CE +
Sbjct: 97 GAAHILMKMWTFGNFWCEFW 116
Score = 27.3 bits (59), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 14/122 (11%)
Query: 60 KQMREQAKKMNVATLRSGDQSGTS---AEIKLAKVALMTISLWFLAWTPYLVINFGGILE 116
Q +AK++ + T R+G E K K + + + L W P+ ++N +++
Sbjct: 376 NQTPNRAKRV-ITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 434
Query: 117 MVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGTMSMV--G 174
I + I + N+ +NP++Y P + +Q L +CL S+ G
Sbjct: 435 DNLIRKEVYILLNWIGYVNSGFNPLIYC----RSPDFRIAFQEL----LCLRRSSLKAYG 486
Query: 175 NG 176
NG
Sbjct: 487 NG 488
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 39/81 (48%)
Query: 156 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMV 215
W + L M + + + GN +V+ T+ L+T +N+ + +LA +D + + P
Sbjct: 10 WEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGA 69
Query: 216 LNCFYETWTLGPFMCELYGML 236
TW G F+CEL+ L
Sbjct: 70 TLVVRGTWLWGSFLCELWTSL 90
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 13/127 (10%)
Query: 17 DYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRS 76
D++T +R+Y I +++PL+++I+ + R +++ +K+ V +R
Sbjct: 170 DFVT----NRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKRVMLMR- 224
Query: 77 GDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANA 136
E K K + + ++ L W P+ ++N + + + + + AN+
Sbjct: 225 --------EHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANS 276
Query: 137 VYNPIVY 143
NPI+Y
Sbjct: 277 AMNPIIY 283
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%)
Query: 153 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAP 212
+W +G+ M + + GN +V+ + L+T +N + +LA +D M ++ P
Sbjct: 5 DEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVP 64
Query: 213 TMVLNCFYETWTLGPFMCELY 233
+ WT G F CE +
Sbjct: 65 FGAACILMKMWTFGNFWCEFW 85
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 163 TMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYET 222
+++C+ + + GN +V+Y+ + ++T +NI + NLA +D + S P +N T
Sbjct: 25 SIVCV--VGLFGNFLVMYVIVRYTKMKTATNIYIFNLALAD-ALATSTLPFQSVNYLMGT 81
Query: 223 WTLGPFMCEL 232
W G +C++
Sbjct: 82 WPFGNILCKI 91
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 165 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWT 224
+C+G ++GN +V+Y+ L ++T +NI + NLA +D ++ ++ P + W
Sbjct: 135 VCVG--GLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTL-PFQGTDILLGFWP 191
Query: 225 LGPFMCE 231
G +C+
Sbjct: 192 FGNALCK 198
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 170 MSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFM 229
+ ++GN +V++ + L+T +NI + NLA +D + S P ETW G +
Sbjct: 27 VGLLGNVLVMFGIVRYTKLKTATNIYIFNLALAD-ALATSTLPFQSAKYLMETWPFGELL 85
Query: 230 CE 231
C+
Sbjct: 86 CK 87
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 170 MSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFM 229
+ +VGN +V+++ + ++T +NI + NLA +D + +M P +W G +
Sbjct: 35 VGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTM-PFQSTVYLMNSWPFGDVL 93
Query: 230 CEL 232
C++
Sbjct: 94 CKI 96
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 167 LGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLG 226
L ++++GN +V+ F K L+T +N +++LA +D + W LG
Sbjct: 22 LALVTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLIIGVISMNLFTTYIIMNRWALG 81
Query: 227 PFMCELY 233
C+L+
Sbjct: 82 NLACDLW 88
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 7/95 (7%)
Query: 60 KQMREQAKKMNVATLRSGD----QSGTSAEIKLAKVALMTISLWFLAWTPYLVIN-FGGI 114
Q +AK++ + T R+G +S E+ AK + + L+ L W P +IN F
Sbjct: 362 NQTPNRAKRV-ITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFF 420
Query: 115 LEMVEINPLITIW-GSVFAKANAVYNPIVYAIRYQ 148
PL ++ V + N+V NP +YA R +
Sbjct: 421 CPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIR 455
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 31.2 bits (69), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 153 HPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAP 212
P Y AL + L + GNG+V L + L+T +N LVV+LA +D + + P
Sbjct: 36 RPHAYYALSYCALILAIV--FGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMP 93
Query: 213 TMV-LNCFYETWTLGPFMCELY 233
+V L W C+++
Sbjct: 94 WVVYLEVTGGVWNFSRICCDVF 115
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 210 MAPTMVLNCFY----ETWTLGPFMCELYGMLGHPKFRQALDKKFPSLV 253
MAP + NC Y + W+ G F+ EL+ + P +D KF ++
Sbjct: 232 MAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMI 279
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 210 MAPTMVLNCFY----ETWTLGPFMCELYGMLGHPKFRQALDKKFPSLV 253
MAP + NC Y + W+ G F+ EL+ + P +D KF ++
Sbjct: 237 MAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMI 284
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 210 MAPTMVLNCFY----ETWTLGPFMCELYGMLGHPKFRQALDKKFPSLV 253
MAP + NC Y + W+ G F+ EL+ + P +D KF ++
Sbjct: 214 MAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMI 261
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 210 MAPTMVLNCFY----ETWTLGPFMCELYGMLGHPKFRQALDKKFPSLV 253
MAP + NC Y + W+ G F+ EL+ + P +D KF ++
Sbjct: 237 MAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMI 284
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 167 LGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSMAPTMVLNCFYETWTL 225
L ++++GN +V+ ++L+T +N + +LA +D + +FSM L W L
Sbjct: 33 LSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMN-LYTLYTVIGYWPL 91
Query: 226 GPFMCELYGMLGH 238
GP +C+L+ L +
Sbjct: 92 GPVVCDLWLALDY 104
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 210 MAPTMVLNCFY----ETWTLGPFMCELYGMLGHPKFRQALDKKFPSLV 253
MAP + NC Y + W+ G F+ EL+ + P +D KF ++
Sbjct: 230 MAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMI 277
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 58 HEKQMRE-QAKKMNVATLRSG--------DQSGTSAEIKLAKVALMTISLWFLAWTPYLV 108
+E +++E QA + T R+ +S E+ AK + + L+ L W P +
Sbjct: 313 NEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHI 372
Query: 109 IN-FGGILEMVEINPLITIW-GSVFAKANAVYNPIVYAIRYQ 148
IN F PL ++ V + N+V NP +YA R +
Sbjct: 373 INCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIR 414
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 179 VYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFY---ETWTLGPFMCELYG 234
++I L K +RT +N +VNLAF++ M A V+N Y W G F C+ +
Sbjct: 54 MWIILAHKRMRTVTNYFLVNLAFAEASM---AAFNTVVNFTYAVHNEWYYGLFYCKFHN 109
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKAN 135
GDQSG +++ L + S+W LA Y+V+N ++V S + +
Sbjct: 475 QGDQSGAFSQVFLPADEGVESSIWLLA-KAYVVVNDSCYHQLV----------SHWLNTH 523
Query: 136 AVYNPIVYAIRYQYPPMHPLW-----YQALGLTMICLGTMSMVGNGIVV 179
AV P + A +HP++ + + + L +S+V +G V+
Sbjct: 524 AVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINGLARLSLVNDGGVI 572
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 172 MVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCE 231
+VGNG+V+ + K LR+ ++ ++L+ +D + ++ P ++ W G F+C+
Sbjct: 63 IVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITL-PFWAVDAV-ANWYFGNFLCK 120
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 172 MVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCE 231
+VGNG+V+ + K LR+ ++ ++L+ +D + ++ P ++ W G F+C+
Sbjct: 63 IVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITL-PFWAVDAV-ANWYFGNFLCK 120
>pdb|1DUX|C Chain C, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
pdb|1DUX|F Chain F, Elk-1DNA STRUCTURE REVEALS HOW RESIDUES DISTAL FROM DNA-
Binding Surface Affect Dna-Recognition
Length = 94
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 112 GGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPP 151
GG ++V+ + +WG K N Y+ + A+RY Y
Sbjct: 31 GGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDK 70
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 172 MVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCE 231
+VGNG+V+ + K LR+ ++ ++L+ +D + ++ P ++ W G F+C+
Sbjct: 63 IVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITL-PFWAVDAV-ANWYFGNFLCK 120
>pdb|1CFV|L Chain L, Monoclonal Antibody Fragment Fv4155 From E. Coli
pdb|2BFV|L Chain L, Monoclonal Antibody Fragment Fv4155 From E. Coli
pdb|1BFV|L Chain L, Monoclonal Antibody Fragment Fv4155 From E. Coli
Length = 113
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFG 112
SG SGT +K+++VA + L+F + + ++ + FG
Sbjct: 68 SGSGSGTDFTLKISRVAAEDLGLYFCSQSSHVPLTFG 104
>pdb|1RMF|L Chain L, Structures Of A Monoclonal Anti-Icam-1 Antibody R6.5
Fragment At 2.8 Angstroms Resolution
Length = 219
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGG----ILEMVEINPLITIW 127
SG SGT +K+++V + ++F + + ++ + FGG ++ + P ++I+
Sbjct: 68 SGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPLTFGGGTKLEIKRADAAPTVSIF 123
>pdb|1IGI|L Chain L, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|A Chain A, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|C Chain C, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
Length = 219
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGG----ILEMVEINPLITIW 127
SG SGT +K+++V + ++F + T ++ FGG ++ + P ++I+
Sbjct: 68 SGSGSGTDFTLKISRVEAEDLGIYFCSQTTHVPPTFGGGTKLEIKRADAAPTVSIF 123
>pdb|1MAJ|A Chain A, Solution Structure Of An Isolated Antibody Vl Domain
pdb|1MAK|A Chain A, Solution Structure Of An Isolated Antibody Vl Domain
Length = 113
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGG 113
SG SGT +K+++V + ++F + T ++ FGG
Sbjct: 68 SGSGSGTDFTLKISRVEAEDLGIYFCSQTTHVPPTFGG 105
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 16/109 (14%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKAN 135
GDQSG +++ L + S+W LA Y+V+N ++V S +
Sbjct: 475 QGDQSGAFSQVFLPADEGVESSIWLLA-KAYVVVNDSCYHQLV----------SHXLNTH 523
Query: 136 AVYNPIVYAIRYQYPPMHPLW-----YQALGLTMICLGTMSMVGNGIVV 179
AV P + A +HP++ + + + L +S V +G V+
Sbjct: 524 AVVEPFIIATNRHLSVVHPIYKLLHPHYRDTMNINGLARLSXVNDGGVI 572
>pdb|3H0G|K Chain K, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|W Chain W, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 123
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 227 PFMCELYGMLGHPKFRQALDKKFPSLVCGTVESDSSSAASVQTN--VTDDK 275
P EL ++G PK LD K P+ T+E + + A++ N ++D++
Sbjct: 4 PERYELIELMGLPKVTYELDSKSPNAAVVTLEKEDHTLANMLANQLLSDER 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,884,575
Number of Sequences: 62578
Number of extensions: 300840
Number of successful extensions: 894
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 85
length of query: 276
length of database: 14,973,337
effective HSP length: 97
effective length of query: 179
effective length of database: 8,903,271
effective search space: 1593685509
effective search space used: 1593685509
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)