Query psy3981
Match_columns 276
No_of_seqs 482 out of 2181
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 22:13:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.7 2.6E-18 5.5E-23 149.3 7.2 130 11-150 185-325 (423)
2 PHA03234 DNA packaging protein 99.7 4.8E-18 1E-22 150.6 8.8 116 12-150 179-306 (338)
3 PHA03235 DNA packaging protein 99.7 7.1E-17 1.5E-21 146.4 7.6 118 11-150 185-313 (409)
4 PHA02834 chemokine receptor-li 99.6 2E-16 4.2E-21 139.7 5.9 120 10-151 170-300 (323)
5 KOG4219|consensus 99.6 1.6E-16 3.5E-21 138.1 3.8 99 152-252 30-152 (423)
6 PF00001 7tm_1: 7 transmembran 99.6 1.5E-15 3.3E-20 127.8 7.0 123 11-143 133-257 (257)
7 PHA02638 CC chemokine receptor 99.6 1.9E-15 4.2E-20 137.5 7.9 118 11-150 252-387 (417)
8 KOG4220|consensus 99.5 1.2E-14 2.5E-19 126.7 7.2 66 83-148 410-475 (503)
9 PHA03087 G protein-coupled che 99.5 6.1E-14 1.3E-18 124.4 9.1 124 7-151 181-314 (335)
10 PHA03234 DNA packaging protein 99.4 1.1E-13 2.3E-18 122.8 5.7 85 156-242 31-141 (338)
11 KOG4220|consensus 99.4 1.6E-14 3.5E-19 125.8 -0.0 95 158-252 31-149 (503)
12 PHA02638 CC chemokine receptor 99.4 4.2E-13 9.1E-18 122.2 4.2 97 156-255 97-217 (417)
13 PHA02834 chemokine receptor-li 99.3 5.5E-12 1.2E-16 111.4 6.7 87 154-243 25-135 (323)
14 PHA03087 G protein-coupled che 99.1 5.7E-11 1.2E-15 105.4 5.2 95 155-251 38-156 (335)
15 PHA03235 DNA packaging protein 99.1 5.4E-11 1.2E-15 108.1 3.1 97 155-253 30-151 (409)
16 PF00001 7tm_1: 7 transmembran 99.0 5.4E-11 1.2E-15 99.9 0.4 78 174-251 1-102 (257)
17 PF10320 7TM_GPCR_Srsx: Serpen 98.5 3.1E-08 6.7E-13 84.7 2.2 78 169-248 2-103 (257)
18 KOG2087|consensus 98.3 6.5E-08 1.4E-12 84.0 -1.2 119 11-149 176-295 (363)
19 PF10324 7TM_GPCR_Srw: Serpent 97.7 9.7E-05 2.1E-09 65.0 6.5 105 34-150 198-307 (318)
20 PF05296 TAS2R: Mammalian tast 97.4 0.0024 5.2E-08 55.9 11.8 105 28-143 180-284 (303)
21 KOG2087|consensus 97.4 8.9E-05 1.9E-09 64.8 2.0 87 162-248 29-146 (363)
22 PF10320 7TM_GPCR_Srsx: Serpen 96.3 0.012 2.6E-07 50.3 6.3 121 7-151 128-250 (257)
23 PF11970 Git3_C: G protein-cou 96.2 0.02 4.4E-07 39.1 6.1 66 83-148 5-72 (76)
24 PF10328 7TM_GPCR_Srx: Serpent 95.6 0.0066 1.4E-07 52.3 1.9 87 167-253 3-114 (274)
25 PF05462 Dicty_CAR: Slime mold 95.4 0.13 2.7E-06 45.1 9.3 55 92-148 204-258 (303)
26 PF10323 7TM_GPCR_Srv: Serpent 95.3 0.098 2.1E-06 45.3 8.2 99 37-148 172-271 (283)
27 PF03402 V1R: Vomeronasal orga 95.1 0.019 4.1E-07 49.1 3.1 96 38-143 157-252 (265)
28 PF10324 7TM_GPCR_Srw: Serpent 94.8 0.025 5.3E-07 49.7 3.2 53 167-220 6-59 (318)
29 PF02101 Ocular_alb: Ocular al 94.8 0.15 3.2E-06 45.4 7.7 26 89-114 243-268 (405)
30 PF10327 7TM_GPCR_Sri: Serpent 94.0 0.43 9.3E-06 41.8 9.1 102 31-148 196-297 (303)
31 PF10321 7TM_GPCR_Srt: Serpent 93.8 0.34 7.5E-06 42.6 8.1 101 28-148 195-295 (313)
32 PF05296 TAS2R: Mammalian tast 93.7 0.21 4.5E-06 43.8 6.5 65 155-219 4-71 (303)
33 PF05462 Dicty_CAR: Slime mold 90.9 0.49 1.1E-05 41.4 5.3 55 156-210 5-59 (303)
34 PF10317 7TM_GPCR_Srd: Serpent 90.3 1.9 4.1E-05 37.5 8.5 63 82-145 219-281 (292)
35 PF11710 Git3: G protein-coupl 87.7 1.3 2.8E-05 36.3 5.3 64 169-232 12-76 (201)
36 PF03402 V1R: Vomeronasal orga 87.3 0.82 1.8E-05 39.2 4.0 51 187-239 6-57 (265)
37 PF10328 7TM_GPCR_Srx: Serpent 86.2 4.3 9.4E-05 34.7 8.0 94 41-149 170-264 (274)
38 PF10321 7TM_GPCR_Srt: Serpent 79.5 5.3 0.00011 35.2 5.9 56 154-209 29-84 (313)
39 PF10326 7TM_GPCR_Str: Serpent 74.9 1.8 4E-05 37.7 1.8 99 30-145 198-297 (307)
40 PF15086 UPF0542: Uncharacteri 69.5 23 0.0005 23.7 5.5 37 28-64 20-57 (74)
41 PF10323 7TM_GPCR_Srv: Serpent 68.0 4.5 9.7E-05 35.0 2.6 41 170-210 7-51 (283)
42 KOG2575|consensus 61.4 8.7 0.00019 34.8 3.1 26 84-109 253-278 (510)
43 PF00002 7tm_2: 7 transmembran 56.9 7.1 0.00015 32.5 1.8 49 162-210 5-53 (242)
44 PF10317 7TM_GPCR_Srd: Serpent 53.8 12 0.00027 32.3 2.9 48 163-210 4-52 (292)
45 KOG3827|consensus 51.8 31 0.00068 31.0 5.0 96 87-182 61-163 (400)
46 PF10319 7TM_GPCR_Srj: Serpent 50.7 1.8E+02 0.0038 25.7 10.6 61 81-142 237-298 (310)
47 PF10322 7TM_GPCR_Sru: Serpent 48.7 67 0.0015 28.2 6.6 48 40-97 207-254 (307)
48 PF13853 7tm_4: Olfactory rece 48.2 0.056 1.2E-06 41.9 -11.4 61 25-106 54-114 (144)
49 COG1862 YajC Preprotein transl 47.0 48 0.001 23.7 4.5 30 37-66 12-41 (97)
50 PF02118 Srg: Srg family chemo 45.5 1.8E+02 0.004 24.4 11.3 49 37-104 177-225 (275)
51 PF06305 DUF1049: Protein of u 40.6 1E+02 0.0022 19.9 6.3 36 28-63 23-58 (68)
52 PF02076 STE3: Pheromone A rec 38.3 2.6E+02 0.0057 24.2 8.6 27 87-114 196-222 (283)
53 PF04238 DUF420: Protein of un 37.5 42 0.00091 25.5 3.2 35 83-117 32-66 (133)
54 PF04789 DUF621: Protein of un 33.5 2E+02 0.0043 25.0 6.8 101 27-149 186-287 (305)
55 TIGR00739 yajC preprotein tran 32.8 97 0.0021 21.4 4.1 25 43-67 12-36 (84)
56 PF09889 DUF2116: Uncharacteri 32.7 45 0.00097 21.5 2.2 22 83-104 33-54 (59)
57 PF10326 7TM_GPCR_Str: Serpent 30.3 38 0.00081 29.4 2.2 46 165-210 6-52 (307)
58 PRK06531 yajC preprotein trans 29.6 1E+02 0.0022 22.8 3.9 23 39-61 7-29 (113)
59 COG3771 Predicted membrane pro 27.5 2.2E+02 0.0048 19.9 5.9 41 29-69 45-85 (97)
60 PF03155 Alg6_Alg8: ALG6, ALG8 27.5 78 0.0017 29.6 3.8 27 83-109 218-244 (469)
61 KOG4193|consensus 26.9 1.9E+02 0.0042 28.1 6.4 58 37-104 474-531 (610)
62 KOG4255|consensus 25.7 1.1E+02 0.0024 27.4 4.1 76 136-215 58-138 (439)
63 PF02699 YajC: Preprotein tran 25.6 1.2E+02 0.0026 20.8 3.6 20 42-61 10-29 (82)
64 PRK05886 yajC preprotein trans 25.4 2.1E+02 0.0045 21.0 4.9 24 38-61 7-31 (109)
65 PF00002 7tm_2: 7 transmembran 25.1 24 0.00052 29.3 0.0 20 87-106 195-214 (242)
66 COG3924 Predicted membrane pro 22.0 2.4E+02 0.0051 19.0 4.2 27 28-54 42-68 (80)
67 KOG4564|consensus 21.1 1.5E+02 0.0032 27.8 4.2 90 38-149 317-408 (473)
68 PF10327 7TM_GPCR_Sri: Serpent 20.3 1.8E+02 0.0039 25.4 4.5 64 158-221 9-76 (303)
69 PRK05585 yajC preprotein trans 20.0 2.8E+02 0.0061 20.1 4.8 27 40-66 23-50 (106)
No 1
>KOG4219|consensus
Probab=99.74 E-value=2.6e-18 Score=149.28 Aligned_cols=130 Identities=18% Similarity=0.299 Sum_probs=102.2
Q ss_pred ceeeeecccCC--C-----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCch
Q psy3981 11 LTACGTDYLTK--D-----WHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS 83 (276)
Q Consensus 11 ~~~C~~~~~~~--~-----~~~~~y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (276)
...|...|+++ . ...+.|.....++.+++|++++..+|.+|.+.+|+.+....+ +.+..++.+
T Consensus 185 ~~~~~~~~pe~~~~~~~~~~~~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~----------~d~~~~~~k 254 (423)
T KOG4219|consen 185 RVVCVTAWPEHVCPTENESLLMQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQ----------QDRKHEQLK 254 (423)
T ss_pred eEEEEEecccccCCcchhhhhhcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccch----------hchhhHHHH
Confidence 56788877664 1 112347888889999999999999999999999975421111 112345678
Q ss_pred hHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhcc----ccccHHHHHHHHhhcccCccccccccccccCCC
Q psy3981 84 AEIKLAKVALMTISLWFLAWTPYLVINFGGILEM----VEINPLITIWGSVFAKANAVYNPIVYAIRYQYP 150 (276)
Q Consensus 84 ~~~k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~----~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~~ 150 (276)
+++|+.||+.+|++.|.+||+|||+..++....+ ......++....||+.+|+|+||+||++.|+..
T Consensus 255 ak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rf 325 (423)
T KOG4219|consen 255 AKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRF 325 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHH
Confidence 8999999999999999999999999999886543 235667888999999999999999999998653
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.74 E-value=4.8e-18 Score=150.57 Aligned_cols=116 Identities=15% Similarity=0.191 Sum_probs=84.6
Q ss_pred eeeeecccCCCcccchhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHH
Q psy3981 12 TACGTDYLTKDWHHRSYLI---FYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKL 88 (276)
Q Consensus 12 ~~C~~~~~~~~~~~~~y~i---~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 88 (276)
..|.++|+.++. ...+.. ..+.++|++|+++|++||.+|.+.++++. .++++|+
T Consensus 179 ~~C~~~~~~~~~-~~~~~~~~~~~~~~~f~iPl~im~~cY~~I~~~L~~~~----------------------~~~~~k~ 235 (338)
T PHA03234 179 GKCNIHISSKKA-YDLFIAIKIVFCFIWGIFPTMIFSFFYVIFCKALHALT----------------------EKKHKKT 235 (338)
T ss_pred CcCcccCCcchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----------------------hhhhhhh
Confidence 579888754221 122221 22344679999999999999999986420 1356789
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHhcc-----cc----ccHHHHHHHHhhcccCccccccccccccCCC
Q psy3981 89 AKVALMTISLWFLAWTPYLVINFGGILEM-----VE----INPLITIWGSVFAKANAVYNPIVYAIRYQYP 150 (276)
Q Consensus 89 ~k~l~~vv~~F~icw~Py~i~~l~~~~~~-----~~----~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~~ 150 (276)
+||+++++++|++||+||++..++..+.. .. .....+.++.+++++|||+||+||++.+++.
T Consensus 236 ~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~F 306 (338)
T PHA03234 236 LFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDF 306 (338)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHH
Confidence 99999999999999999999887654321 11 1234567888999999999999999888654
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.68 E-value=7.1e-17 Score=146.35 Aligned_cols=118 Identities=11% Similarity=0.232 Sum_probs=88.0
Q ss_pred ceeeeecccCCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHH
Q psy3981 11 LTACGTDYLTKDW--HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKL 88 (276)
Q Consensus 11 ~~~C~~~~~~~~~--~~~~y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 88 (276)
...|...+..+.. ....|.+..+++.|++|+++|++||.+|++.++++.+ ++++|.
T Consensus 185 ~~~C~~~~~~~~~~~~~~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~----------------------~~~~k~ 242 (409)
T PHA03235 185 YETCVIYFRADQVKTVLSTFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY----------------------KKRSRT 242 (409)
T ss_pred cceeeEeCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------------------hcchhh
Confidence 4579766544221 1234666677788999999999999999999986421 224577
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHhccc---------cccHHHHHHHHhhcccCccccccccccccCCC
Q psy3981 89 AKVALMTISLWFLAWTPYLVINFGGILEMV---------EINPLITIWGSVFAKANAVYNPIVYAIRYQYP 150 (276)
Q Consensus 89 ~k~l~~vv~~F~icw~Py~i~~l~~~~~~~---------~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~~ 150 (276)
.+++.+++++|++||+||++..++..+... +....+..++.+++++|||+||+||++.+++.
T Consensus 243 ~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~F 313 (409)
T PHA03235 243 LTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDF 313 (409)
T ss_pred hhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHH
Confidence 889999999999999999999887654211 12335667888999999999999999887544
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.64 E-value=2e-16 Score=139.73 Aligned_cols=120 Identities=19% Similarity=0.343 Sum_probs=84.2
Q ss_pred CceeeeecccCCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHH
Q psy3981 10 NLTACGTDYLTKDW-HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKL 88 (276)
Q Consensus 10 ~~~~C~~~~~~~~~-~~~~y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 88 (276)
+...|..+...++. ....|.....++.|++|+++|++||.+|.+.+|++.+ ++++|.
T Consensus 170 ~~~~C~~~~~~~~~~~~~~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~~----------------------~~~~k~ 227 (323)
T PHA02834 170 NLKQCIFNDYHENFSWSAFFNFEINIFGIVIPLIILIYCYSKILYTLKNCKN----------------------KNKTRS 227 (323)
T ss_pred CceEEeccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----------------------cccceE
Confidence 34578643322211 1112333445788999999999999999999875311 224578
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHHhcccc--------ccH--HHHHHHHhhcccCccccccccccccCCCC
Q psy3981 89 AKVALMTISLWFLAWTPYLVINFGGILEMVE--------INP--LITIWGSVFAKANAVYNPIVYAIRYQYPP 151 (276)
Q Consensus 89 ~k~l~~vv~~F~icw~Py~i~~l~~~~~~~~--------~~~--~~~~~~~~l~~~ns~~NPiIY~~~~~~~~ 151 (276)
+||+++++++|++||+||++..++..+.+.. ... ....++.+++++||++||+||++.+++..
T Consensus 228 ~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR 300 (323)
T PHA02834 228 IKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFK 300 (323)
T ss_pred EeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHH
Confidence 8999999999999999999998876553211 011 13457788999999999999998876543
No 5
>KOG4219|consensus
Probab=99.62 E-value=1.6e-16 Score=138.13 Aligned_cols=99 Identities=26% Similarity=0.444 Sum_probs=88.6
Q ss_pred CCCchhhHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhhccccccccccce
Q psy3981 152 MHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCE 231 (276)
Q Consensus 152 ~~~~~~~~l~~~~~~~~~~~~~~n~~vi~~~~~~~~~~~~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~~~~w~~g~~~C~ 231 (276)
...+...++++.|.++.++++.||.+|+|++..+|++|+.+|+|++|||+||++++++..|+.....+.++|.+|...|+
T Consensus 30 lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~C~ 109 (423)
T KOG4219|consen 30 LPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFYCR 109 (423)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccceee
Confidence 44456778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-----------------------eeeecCc-cccccccccceEE
Q psy3981 232 L-----------------------YGMLGHP-KFRQALDKKFPSL 252 (276)
Q Consensus 232 ~-----------------------y~aI~~P-~~~~~~~~~~~~~ 252 (276)
+ |.||.|| +.+ +++|..+.
T Consensus 110 f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~ 152 (423)
T KOG4219|consen 110 FVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKI 152 (423)
T ss_pred eccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceee
Confidence 9 8899999 433 55555443
No 6
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.60 E-value=1.5e-15 Score=127.76 Aligned_cols=123 Identities=23% Similarity=0.535 Sum_probs=99.9
Q ss_pred ceeeeecccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHH
Q psy3981 11 LTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAK 90 (276)
Q Consensus 11 ~~~C~~~~~~~~~~~~~y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k 90 (276)
...|..++..++ ...+.....++.+++|+.++.++|.+|.+.++|+.++.++++. +..+++.++++|.+|
T Consensus 133 ~~~C~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 202 (257)
T PF00001_consen 133 QSFCFIDFSSSS--SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSS--------SSSRRRSRRERRAAR 202 (257)
T ss_dssp CEEEEESCSSSH--HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTS--------HHHHHHHHHHHHHHH
T ss_pred cccccccccccc--cccccccccccccccceeeeeeecccccccccccccccccccc--------ccccccccccccccc
Confidence 578988776533 3567778888899999999999999999999987664321110 112334578899999
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhcccc--ccHHHHHHHHhhcccCcccccccc
Q psy3981 91 VALMTISLWFLAWTPYLVINFGGILEMVE--INPLITIWGSVFAKANAVYNPIVY 143 (276)
Q Consensus 91 ~l~~vv~~F~icw~Py~i~~l~~~~~~~~--~~~~~~~~~~~l~~~ns~~NPiIY 143 (276)
++.+++++|++||+|+.+..++....+.. .......++.+++++||++||++|
T Consensus 203 ~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 203 TLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccCCceeHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhhCcEEC
Confidence 99999999999999999999998887766 577888999999999999999998
No 7
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.59 E-value=1.9e-15 Score=137.48 Aligned_cols=118 Identities=13% Similarity=0.191 Sum_probs=86.2
Q ss_pred ceeeeecccCCCc----ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHH
Q psy3981 11 LTACGTDYLTKDW----HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEI 86 (276)
Q Consensus 11 ~~~C~~~~~~~~~----~~~~y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (276)
...|...++.+.. ....+.+...+++|++|+++|++||.+|.+++++.+ .++++
T Consensus 252 ~~~C~~~~~~~~~~~~~~~~~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~----------------------~~~k~ 309 (417)
T PHA02638 252 NYQCTLIEDNEKNNISFLGRILQFEINILGMFIPIIIFAFCYIKIILKLKQLK----------------------KSKKT 309 (417)
T ss_pred CCeeeeeccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------------ccccc
Confidence 4578766543221 112344445677899999999999999999987421 12356
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhcccc--------------ccHHHHHHHHhhcccCccccccccccccCCC
Q psy3981 87 KLAKVALMTISLWFLAWTPYLVINFGGILEMVE--------------INPLITIWGSVFAKANAVYNPIVYAIRYQYP 150 (276)
Q Consensus 87 k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~~~--------------~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~~ 150 (276)
|.+|++++++++|++||+||++..++..+.... ..+....++..++++|||+||+||++..++.
T Consensus 310 k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~F 387 (417)
T PHA02638 310 KSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENF 387 (417)
T ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHH
Confidence 778999999999999999999998887653210 1123456788899999999999999887653
No 8
>KOG4220|consensus
Probab=99.54 E-value=1.2e-14 Score=126.67 Aligned_cols=66 Identities=24% Similarity=0.343 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhccccccHHHHHHHHhhcccCccccccccccccC
Q psy3981 83 SAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQ 148 (276)
Q Consensus 83 ~~~~k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~ 148 (276)
.+|+|++|++.+|+++|++||+||.++.++..|++..++..++.+..||.|+||.+||++|++-|+
T Consensus 410 ~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~CiP~tlW~~gYwLCYINSTiNP~CYALCNa 475 (503)
T KOG4220|consen 410 VRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKNCIPETLWTFGYWLCYINSTINPLCYALCNA 475 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHcccceeeeehHhhcccccchhHhhhhhheeeecccccHHHHHHHhH
Confidence 578899999999999999999999999999999999999999999999999999999999987664
No 9
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.50 E-value=6.1e-14 Score=124.37 Aligned_cols=124 Identities=17% Similarity=0.301 Sum_probs=88.4
Q ss_pred ecCCceeeeecccCCCcccchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhH
Q psy3981 7 PEGNLTACGTDYLTKDWHHRSY-LIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAE 85 (276)
Q Consensus 7 ~~~~~~~C~~~~~~~~~~~~~y-~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (276)
.+++...|..++..++.....+ .+...++.+++|++++.++|.+|.+.++++. +.+++
T Consensus 181 ~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~---------------------~~~~~ 239 (335)
T PHA03087 181 KDHETLICCMFYNNKTMNWKLFINFEINIIGMLIPLTILLYCYSKILITLKGIN---------------------KSKKN 239 (335)
T ss_pred ccCCCceEEecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------------------cchhc
Confidence 3445567888776433212222 2334567799999999999999998887532 12356
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhcc---cc------ccHHHHHHHHhhcccCccccccccccccCCCC
Q psy3981 86 IKLAKVALMTISLWFLAWTPYLVINFGGILEM---VE------INPLITIWGSVFAKANAVYNPIVYAIRYQYPP 151 (276)
Q Consensus 86 ~k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~---~~------~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~~~ 151 (276)
+|+.|++.+++++|++||+|+++..++..... .+ ..+....++.+++.+||++||+||++.+++..
T Consensus 240 ~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr 314 (335)
T PHA03087 240 KKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFN 314 (335)
T ss_pred chHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHH
Confidence 78899999999999999999999877654321 11 12344567788999999999999999886544
No 10
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.44 E-value=1.1e-13 Score=122.84 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhh--hccCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccccccccccee-
Q psy3981 156 WYQALGLTMICLGTMSMVGNGIVVYIF--LCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCEL- 232 (276)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~n~~vi~~~--~~~~~~~~~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~~~~w~~g~~~C~~- 232 (276)
.+..+.++|.+++++|++||++++++. .+++++|+++|+|+.|||++|++++++.+| .... ..++|.+|+.+|++
T Consensus 31 ~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l~lp~-~~~~-~~~~w~fG~~lCk~~ 108 (338)
T PHA03234 31 AQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHMLCVFF-LTLN-REALFNFNQAFCQCV 108 (338)
T ss_pred HHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHH-HHHH-HhCCccCchhHHHHH
Confidence 456677899999999999999999954 566777999999999999999999887744 4443 24579999999999
Q ss_pred ----------------------eeeecCc-ccc
Q psy3981 233 ----------------------YGMLGHP-KFR 242 (276)
Q Consensus 233 ----------------------y~aI~~P-~~~ 242 (276)
|.||+|| ++.
T Consensus 109 ~~~~~~~~~~Si~~L~~ISiDRY~aIv~p~~~~ 141 (338)
T PHA03234 109 LFIYHASCSYSICMLAIIATIRYKTLHRRKKND 141 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHeeeechhhhh
Confidence 9999999 653
No 11
>KOG4220|consensus
Probab=99.43 E-value=1.6e-14 Score=125.82 Aligned_cols=95 Identities=24% Similarity=0.397 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccccccccccee-----
Q psy3981 158 QALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCEL----- 232 (276)
Q Consensus 158 ~~l~~~~~~~~~~~~~~n~~vi~~~~~~~~~~~~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~~~~w~~g~~~C~~----- 232 (276)
..+.++-..+.+++++||++|++.+..+|+|||..|+|+++||+|||..|.+.||....+.+.|+|++|...|.+
T Consensus 31 v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg~W~LG~~~CdlWLalD 110 (503)
T KOG4220|consen 31 VFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMGYWPLGPLVCDLWLALD 110 (503)
T ss_pred EeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHcccccchHHHHHHHHHH
Confidence 345567788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------eeeecCc-cccccccccceEE
Q psy3981 233 ------------------YGMLGHP-KFRQALDKKFPSL 252 (276)
Q Consensus 233 ------------------y~aI~~P-~~~~~~~~~~~~~ 252 (276)
|..|.+| .|+..+|.++|..
T Consensus 111 YvaSNASVmNLLiISFDRYFsVTrPLtYrakRTtkrA~~ 149 (503)
T KOG4220|consen 111 YVASNASVMNLLIISFDRYFSVTRPLTYRAKRTTKRAGL 149 (503)
T ss_pred HHhhhhhhhhhheeeeecceeecccccccccccchHHHH
Confidence 7799999 9999999988743
No 12
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.36 E-value=4.2e-13 Score=122.23 Aligned_cols=97 Identities=25% Similarity=0.560 Sum_probs=80.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccccccccccee---
Q psy3981 156 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCEL--- 232 (276)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~n~~vi~~~~~~~~~~~~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~~~~w~~g~~~C~~--- 232 (276)
+...+..++.+++++|++||.++++++.+ |++|+++|++++|||++|++..+ ..|+.+... .++|.+|+..|++
T Consensus 97 ~~~~l~~~y~lvfvlgliGN~LVl~il~~-k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~-~~~W~fg~~~Ck~~~~ 173 (417)
T PHA02638 97 ISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYIFNLAISDLIFVI-DFPFIIYNE-FDQWIFGDFMCKVISA 173 (417)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH-hccccccccchhhHHH
Confidence 55677888999999999999999987654 88999999999999999998865 458887765 4689999999999
Q ss_pred --------------------eeeecCc-cccccccccceEEEEE
Q psy3981 233 --------------------YGMLGHP-KFRQALDKKFPSLVCG 255 (276)
Q Consensus 233 --------------------y~aI~~P-~~~~~~~~~~~~~i~~ 255 (276)
|.||+|| ++.+.++++.++.+++
T Consensus 174 l~~~~~~~Si~~L~~isiDRYlaIv~p~~~~~~~~~~~~~i~~~ 217 (417)
T PHA02638 174 SYYIGFFSNMFLITLMSIDRYFAILYPISFQKYRTFNIGIILCI 217 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccceecHhhhHhhHh
Confidence 8899999 7777677666544433
No 13
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.28 E-value=5.5e-12 Score=111.39 Aligned_cols=87 Identities=22% Similarity=0.411 Sum_probs=72.3
Q ss_pred CchhhHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccccccccccee-
Q psy3981 154 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCEL- 232 (276)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~n~~vi~~~~~~~~~~~~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~~~~w~~g~~~C~~- 232 (276)
...+..+.+++.+++++|++||+++++++.++++ ++++|+|+.|||++|++. ...+|+.+.... ++|.+|+..|++
T Consensus 25 ~~~~~~~~~~~~li~v~~~~gN~lVi~vi~~~~~-~~~~n~~i~nLAiaDll~-~~~lP~~i~~~~-~~w~~g~~~C~~~ 101 (323)
T PHA02834 25 SDVNYFVIVFYILLFIFGLIGNVLVIAVLIVKRF-MFVVDVYLFNIAMSDLML-VFSFPFIIHNDL-NEWIFGEFMCKLV 101 (323)
T ss_pred cchhhhHHHHHHHHHHHHHhhHHHHHHHHHhccc-cchhhhhhHHHHHHHHHH-HHHHHHHHHHHc-CCcCCcchHHHhH
Confidence 3456678899999999999999999999887665 457899999999999986 456798776554 579999999998
Q ss_pred ----------------------eeeecCc-cccc
Q psy3981 233 ----------------------YGMLGHP-KFRQ 243 (276)
Q Consensus 233 ----------------------y~aI~~P-~~~~ 243 (276)
|.+|+|| ++..
T Consensus 102 ~~~~~~~~~~Si~tL~~IsidRY~aI~~P~~~~~ 135 (323)
T PHA02834 102 LGVYFVGFFSNMFFVTLISIDRYILVVNATKIKN 135 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeCchhccC
Confidence 8899999 6544
No 14
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.12 E-value=5.7e-11 Score=105.39 Aligned_cols=95 Identities=27% Similarity=0.477 Sum_probs=82.0
Q ss_pred chhhHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccccccccccee--
Q psy3981 155 LWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCEL-- 232 (276)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~n~~vi~~~~~~~~~~~~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~~~~w~~g~~~C~~-- 232 (276)
.....+.+++.+++++|++||+++++++.++ ++|+++|+++.|||++|++.++. .|........++|.+|+..|++
T Consensus 38 ~~~~~~~~~~~~i~~~gl~gN~lvl~~~~~~-~~~~~~~~ll~~laisDll~~~~-~~~~~~~~~~~~~~~~~~~C~~~~ 115 (335)
T PHA03087 38 TNSTILIVVYSTIFFFGLVGNIIVIYVLTKT-KIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYYILFQWSFGEFACKIVS 115 (335)
T ss_pred chhhHHHHHHHHHHHHHHHhhHhEEeeehhc-cccCchHHHHHHHHHHHHHHHHh-HHHHHHHHhCCCCCCCcHHHHHHH
Confidence 3456678888999999999999999999888 99999999999999999988775 4776667777889999999998
Q ss_pred ---------------------eeeecCc-cccccccccceE
Q psy3981 233 ---------------------YGMLGHP-KFRQALDKKFPS 251 (276)
Q Consensus 233 ---------------------y~aI~~P-~~~~~~~~~~~~ 251 (276)
|.+|++| +|+..++++++.
T Consensus 116 ~~~~~~~~~S~~~l~~iaidRy~aI~~p~~~~~~~~~~~~~ 156 (335)
T PHA03087 116 GLYYIGFYNSMNFITVMSVDRYIAIVHPVKSNKINTVKYGY 156 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccchhhhH
Confidence 8899999 888888777653
No 15
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.08 E-value=5.4e-11 Score=108.11 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=69.2
Q ss_pred chhhHHHHHHHHHHHHhhhhhhhhhhhhhccCC--CCChhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccccccccccee
Q psy3981 155 LWYQALGLTMICLGTMSMVGNGIVVYIFLCTKN--LRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCEL 232 (276)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~n~~vi~~~~~~~~--~~~~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~~~~w~~g~~~C~~ 232 (276)
..+....+++.+++++|++||+++++++.+.++ .++.+|+|+.|||++|++.. ..+|+.+... ...|..|+..|++
T Consensus 30 ~~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~~-~~~~~~g~~~Ck~ 107 (409)
T PHA03235 30 AARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLSN-QGLLSGSVAGCKF 107 (409)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHhc-CccccCCCCeehh
Confidence 345677889999999999999999998654333 24667899999999999874 5668776532 2223445789999
Q ss_pred -----------------------eeeecCccccccccccceEEE
Q psy3981 233 -----------------------YGMLGHPKFRQALDKKFPSLV 253 (276)
Q Consensus 233 -----------------------y~aI~~P~~~~~~~~~~~~~i 253 (276)
|.+|+||.+....+++++..+
T Consensus 108 ~~~l~~~~~~~Si~tL~~ISiDRY~aI~~p~~~~~~~~~~a~~i 151 (409)
T PHA03235 108 ASLLYYASCTVGFATVALIAADRYRVIHQRTRARSSAYRSTYKI 151 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHeechhhccCcccchhhhh
Confidence 889999933333445544433
No 16
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.02 E-value=5.4e-11 Score=99.91 Aligned_cols=78 Identities=32% Similarity=0.699 Sum_probs=71.4
Q ss_pred hhhhhhhhhhccCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccccccccccee---------------------
Q psy3981 174 GNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCEL--------------------- 232 (276)
Q Consensus 174 ~n~~vi~~~~~~~~~~~~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~~~~w~~g~~~C~~--------------------- 232 (276)
||.+++.++.++|++|++.|+|++|||++|++.++...|........++|.+|+..|++
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~s~~~~~~is~ 80 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFDDWIFSSFLCRIFGFLFYFSSFSSIFSLVAISI 80 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHSSCTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999999888888999999999999
Q ss_pred --eeeecCc-cccccccccceE
Q psy3981 233 --YGMLGHP-KFRQALDKKFPS 251 (276)
Q Consensus 233 --y~aI~~P-~~~~~~~~~~~~ 251 (276)
|.+|++| +|++.++++++.
T Consensus 81 dRy~~i~~p~~~~~~~~~~~~~ 102 (257)
T PF00001_consen 81 DRYLAICHPLRYRRIRTRRRAR 102 (257)
T ss_dssp HHHHHHHSHHTHHHHSCHHHHH
T ss_pred cccccccccccccccccccccc
Confidence 8899999 999988866553
No 17
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.54 E-value=3.1e-08 Score=84.66 Aligned_cols=78 Identities=22% Similarity=0.420 Sum_probs=66.9
Q ss_pred HHhhhhhhhhhhhhhccCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccccccccccee----------------
Q psy3981 169 TMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCEL---------------- 232 (276)
Q Consensus 169 ~~~~~~n~~vi~~~~~~~~~~~~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~~~~w~~g~~~C~~---------------- 232 (276)
++|++||..++.++.++|++|+|++++++.+|++|++......|.....+. +-......|-.
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~~~--~~~i~~~~Cf~~~~~~~f~~~~qs~~~ 79 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFLFR--DHQITRSECFWQIFFYIFFQCAQSVIM 79 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHHHh--heeccHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999999998888875442 23445556655
Q ss_pred -------eeeecCc-ccccccccc
Q psy3981 233 -------YGMLGHP-KFRQALDKK 248 (276)
Q Consensus 233 -------y~aI~~P-~~~~~~~~~ 248 (276)
+.||+.| +|++..+.+
T Consensus 80 l~i~iDr~iaV~~P~~Y~~~~~~~ 103 (257)
T PF10320_consen 80 LAIAIDRLIAVCFPLRYRTISTRK 103 (257)
T ss_pred HHHHhhheeeEeehhhhhhccccc
Confidence 8899999 999999887
No 18
>KOG2087|consensus
Probab=98.33 E-value=6.5e-08 Score=83.97 Aligned_cols=119 Identities=16% Similarity=0.213 Sum_probs=82.4
Q ss_pred ceeeeecccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHH
Q psy3981 11 LTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAK 90 (276)
Q Consensus 11 ~~~C~~~~~~~~~~~~~y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k 90 (276)
...|.+-..++ .....|.+..++..-.+-+++|.++|++|+..+++...+ ......+.+|
T Consensus 176 ~~vClPL~~~~-~~s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~-------------------~~~~~~~~ak 235 (363)
T KOG2087|consen 176 SSVCLPLHIEE-PLSTGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLS-------------------ATLISTSVAK 235 (363)
T ss_pred cceeeecccCC-ccchhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCc-------------------cccchhhhhh
Confidence 46898866543 324436666667777888999999999999999852211 1111146667
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhccccccHHHH-HHHHhhcccCccccccccccccCC
Q psy3981 91 VALMTISLWFLAWTPYLVINFGGILEMVEINPLIT-IWGSVFAKANAVYNPIVYAIRYQY 149 (276)
Q Consensus 91 ~l~~vv~~F~icw~Py~i~~l~~~~~~~~~~~~~~-~~~~~l~~~ns~~NPiIY~~~~~~ 149 (276)
-...++.+-++||.|.++..+...++..-...... .+...+.-+|||+||++|++.++.
T Consensus 236 r~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flPlns~~NP~LYa~fT~~ 295 (363)
T KOG2087|consen 236 RMAFLVFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLPLNSCLNPFLYAFFTPV 295 (363)
T ss_pred CeeEEEEccccccCchheeeeHHhcCCcccChhhceeEEEEEEEcccccCchhHHHcCHH
Confidence 77778889999999999998887766543333322 333445568999999999988754
No 19
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=97.67 E-value=9.7e-05 Score=65.04 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHH
Q psy3981 34 FFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGG 113 (276)
Q Consensus 34 ~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~Py~i~~l~~ 113 (276)
++.-++|.++..+.-..+.+.+|+.+++.++.. +++.+++.|.+|++..+.+.|+++=+|..+..++.
T Consensus 198 i~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~------------~~~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~ 265 (318)
T PF10324_consen 198 IFFKIIPCILLPILTILLIIELRKAKKRRKKLS------------SSKSKKSDRTTKLILFMTISFLISELPQGIIFLLE 265 (318)
T ss_pred hHhhhhhHHHHHHHHHHHHHHHHhccHhhhccc------------ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344678999999999999999987665543211 11134677899999999999999999999999987
Q ss_pred Hhcccc-----ccHHHHHHHHhhcccCccccccccccccCCC
Q psy3981 114 ILEMVE-----INPLITIWGSVFAKANAVYNPIVYAIRYQYP 150 (276)
Q Consensus 114 ~~~~~~-----~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~~ 150 (276)
.+...+ .......+...+...|+..|++||...+.++
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqY 307 (318)
T PF10324_consen 266 SFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQY 307 (318)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHH
Confidence 653221 3345667788899999999999998776543
No 20
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=97.43 E-value=0.0024 Score=55.94 Aligned_cols=105 Identities=11% Similarity=0.199 Sum_probs=68.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHhchhHH
Q psy3981 28 YLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYL 107 (276)
Q Consensus 28 y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~Py~ 107 (276)
+......++..+|+.++.++-..+...++||.|++++. .++.+..+.++..|++|++...++.|.++++-..
T Consensus 180 ~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n--------~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~ 251 (303)
T PF05296_consen 180 YFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKN--------ATGFRDPSTEAHIRAIKTMISFLILYIIYFLSLI 251 (303)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCC--------CCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444458899999999999999999999999988732 2233455678899999999988888877665443
Q ss_pred HHHHHHHhccccccHHHHHHHHhhcccCcccccccc
Q psy3981 108 VINFGGILEMVEINPLITIWGSVFAKANAVYNPIVY 143 (276)
Q Consensus 108 i~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY 143 (276)
+........ .......+...+..+.+...|++=
T Consensus 252 ~~~~~~~~~---~~~~~~~~~~~i~~~yps~hs~iL 284 (303)
T PF05296_consen 252 LSFLSFFFP---ENSIWFWVCEIIIALYPSGHSIIL 284 (303)
T ss_pred HHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHHH
Confidence 322222222 222333444445555555555544
No 21
>KOG2087|consensus
Probab=97.37 E-value=8.9e-05 Score=64.78 Aligned_cols=87 Identities=15% Similarity=0.250 Sum_probs=67.7
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhccCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhhcc-------cccccccccee--
Q psy3981 162 LTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYE-------TWTLGPFMCEL-- 232 (276)
Q Consensus 162 ~~~~~~~~~~~~~n~~vi~~~~~~~~~~~~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~~~-------~w~~g~~~C~~-- 232 (276)
+...++..+++.||.+|++.....+...++..++++|||++|+++++...-....+.... .|--+..+|++
T Consensus 29 i~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~tg~gC~~aG 108 (363)
T KOG2087|consen 29 ISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQTGLGCPVAG 108 (363)
T ss_pred ehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhhhcCCCchHH
Confidence 455678889999999999999888888889999999999999999998876666555431 23445678999
Q ss_pred ---------------------eeeecCc-ccccccccc
Q psy3981 233 ---------------------YGMLGHP-KFRQALDKK 248 (276)
Q Consensus 233 ---------------------y~aI~~P-~~~~~~~~~ 248 (276)
+..|.+| +-.+.-..|
T Consensus 109 flavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr 146 (363)
T KOG2087|consen 109 FLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLR 146 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhheeccccCCCccccc
Confidence 7789999 644444444
No 22
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=96.25 E-value=0.012 Score=50.30 Aligned_cols=121 Identities=12% Similarity=0.208 Sum_probs=75.2
Q ss_pred ecCCceeeeecccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHH
Q psy3981 7 PEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEI 86 (276)
Q Consensus 7 ~~~~~~~C~~~~~~~~~~~~~y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (276)
+++....|.+...-++.....+.... +++ ..++++.|.-....++++.++ ..++++
T Consensus 128 ~~~~~~~C~pp~a~~~~~~~~~~~~~----~~i-nv~tvivY~i~~~~~~~k~~~-------------------~~~~~~ 183 (257)
T PF10320_consen 128 DDETIVICNPPLAFHGTASQIWSYSN----III-NVITVIVYIITIIIFKRKSRS-------------------NSSRSK 183 (257)
T ss_pred CCcccccCCCccccCccHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHccc-------------------cchhHH
Confidence 34446788765433222222222222 222 234456677666666653221 345678
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhcccc--ccHHHHHHHHhhcccCccccccccccccCCCC
Q psy3981 87 KLAKVALMTISLWFLAWTPYLVINFGGILEMVE--INPLITIWGSVFAKANAVYNPIVYAIRYQYPP 151 (276)
Q Consensus 87 k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~~~--~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~~~ 151 (276)
|+.|.+.+.++.|+.+|.=-.+...+....+.+ ....+.....+++..|.+.|-++|-++++|.+
T Consensus 184 kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR 250 (257)
T PF10320_consen 184 KVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYR 250 (257)
T ss_pred HHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHH
Confidence 999999999999999998766665554332222 33345666788999999999999988887643
No 23
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=96.23 E-value=0.02 Score=39.06 Aligned_cols=66 Identities=8% Similarity=0.185 Sum_probs=50.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHhccc-cccHHHHHHHHhhcccCccccccccccccC
Q psy3981 83 SAEIKLAKVALMTISLWFLAWT-PYLVINFGGILEMV-EINPLITIWGSVFAKANAVYNPIVYAIRYQ 148 (276)
Q Consensus 83 ~~~~k~~k~l~~vv~~F~icw~-Py~i~~l~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~ 148 (276)
++-+|.+|.+++==++|+++|+ |+..-.+-...+.. ..+.++..++..+.-+|+.+|-++|+++.+
T Consensus 5 ~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~er 72 (76)
T PF11970_consen 5 KRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRER 72 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecc
Confidence 4556778888888899999999 98766665543322 244677788888999999999999987653
No 24
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=95.60 E-value=0.0066 Score=52.30 Aligned_cols=87 Identities=16% Similarity=0.278 Sum_probs=61.3
Q ss_pred HHHHhhhhhhhhhhhhhccCCCCChhHHHHHHHHHHHHHHHhhhh----hhHHHHhhc-cccccccc-------------
Q psy3981 167 LGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMA----PTMVLNCFY-ETWTLGPF------------- 228 (276)
Q Consensus 167 ~~~~~~~~n~~vi~~~~~~~~~~~~~~~~l~nLa~~Dl~~~~~~~----p~~~~~~~~-~~w~~g~~------------- 228 (276)
+.++|++.|.++++.+.+.+++|++-+.+-.|.|++|.+..+... |..+.+... .+|..+..
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~~~~~~~~~~s~~~g~~~~~~y~~~~ 82 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLDISFLPSSLNSIIFGFIGMFCYFIGP 82 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCchHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999988776442 444433221 11111111
Q ss_pred c------ceeeeeecCc-cccccccccceEEE
Q psy3981 229 M------CELYGMLGHP-KFRQALDKKFPSLV 253 (276)
Q Consensus 229 ~------C~~y~aI~~P-~~~~~~~~~~~~~i 253 (276)
. +.-..||+.| +|.+..+.+....+
T Consensus 83 ~~~~liaiNRf~ai~fP~~y~~~fs~~~T~~~ 114 (274)
T PF10328_consen 83 LSHLLIAINRFCAIFFPFKYKKIFSFKNTIIL 114 (274)
T ss_pred HHHHHHHHHHHheeeeHHHHHhHcCccceehh
Confidence 0 0006799999 89988887766543
No 25
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=95.43 E-value=0.13 Score=45.07 Aligned_cols=55 Identities=11% Similarity=0.201 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHhccccccHHHHHHHHhhcccCccccccccccccC
Q psy3981 92 ALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQ 148 (276)
Q Consensus 92 l~~vv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~ 148 (276)
+..=.++|++||+|-.+..+.+.++.. +..+..+-..++-+...+|.++|++.++
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~~~--~~~l~~Lh~~~s~lqGf~nsivy~~n~~ 258 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIGKN--PFWLSVLHVGFSPLQGFFNSIVYGYNNS 258 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 335678899999999999999887643 3444444455666778899999987764
No 26
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=95.30 E-value=0.098 Score=45.34 Aligned_cols=99 Identities=14% Similarity=0.152 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhc
Q psy3981 37 YFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILE 116 (276)
Q Consensus 37 f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~Py~i~~l~~~~~ 116 (276)
..+-.+..+++|+.++..+||+.+... ++.++..++|.|.+.+.++.+.++++... |++........
T Consensus 172 ~~~~cv~~iv~Y~~i~~~iRk~~k~~s------------~~~s~~~~rE~~L~~~~~i~~~a~~~~~~-~~~~~~~~~~~ 238 (283)
T PF10323_consen 172 VSVTCVICIVCYGIIFIFIRKRNKKKS------------KSSSRSRRREIRLAIQVFILFCAFFVILV-YYIFSNYFAQN 238 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhh------------HhhhhhhhHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 334455678999999999997654111 11244557888888888777766555443 33333333332
Q ss_pred cccc-cHHHHHHHHhhcccCccccccccccccC
Q psy3981 117 MVEI-NPLITIWGSVFAKANAVYNPIVYAIRYQ 148 (276)
Q Consensus 117 ~~~~-~~~~~~~~~~l~~~ns~~NPiIY~~~~~ 148 (276)
.... .......-..+.-..|.+||+.=-..|+
T Consensus 239 ~~~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~ 271 (283)
T PF10323_consen 239 FNTDPIFYLRAFYPILNGLLSFINPWMLLIFNK 271 (283)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhhhHHhhhccH
Confidence 2221 1222234555666778889987655444
No 27
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=95.10 E-value=0.019 Score=49.11 Aligned_cols=96 Identities=16% Similarity=0.151 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhcc
Q psy3981 38 FVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEM 117 (276)
Q Consensus 38 ~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~ 117 (276)
++.+.+|+.+-+.+...+.||++|.+.-. +.+...+...|.|++|++++.+..|+..+.--.+.........
T Consensus 157 ~~fvgLM~~aSgyMV~~L~RH~q~VqhIh--------s~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~ 228 (265)
T PF03402_consen 157 VLFVGLMIWASGYMVFLLYRHHQQVQHIH--------SSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFK 228 (265)
T ss_pred HHHHHHHHhhhhhheeeeeecccccccCc--------CCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhc
Confidence 55577899999999999999887765211 1222344568999999999999999999888776654433222
Q ss_pred ccccHHHHHHHHhhcccCcccccccc
Q psy3981 118 VEINPLITIWGSVFAKANAVYNPIVY 143 (276)
Q Consensus 118 ~~~~~~~~~~~~~l~~~ns~~NPiIY 143 (276)
+ .+++..+...++..-+.+-|++-
T Consensus 229 -~-~~~~~~~~~~ls~cfptisPfvL 252 (265)
T PF03402_consen 229 -N-SPWLLNISVFLSSCFPTISPFVL 252 (265)
T ss_pred -C-CcceeEHHHHHhHHhHhhChHHh
Confidence 1 23333455566666677777765
No 28
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=94.84 E-value=0.025 Score=49.74 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=42.7
Q ss_pred HHHHhhhhhhhhhhhhhccCCCCC-hhHHHHHHHHHHHHHHHhhhhhhHHHHhhc
Q psy3981 167 LGTMSMVGNGIVVYIFLCTKNLRT-PSNILVVNLAFSDFCMMFSMAPTMVLNCFY 220 (276)
Q Consensus 167 ~~~~~~~~n~~vi~~~~~~~~~~~-~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~~ 220 (276)
+.++|+++|.+-+.+.. +|++|+ ++|.++..+|++|++..+...+..+.....
T Consensus 6 ~~~~g~~~N~~h~~VLt-rk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~ 59 (318)
T PF10324_consen 6 LSIFGLFINIFHLIVLT-RKSMRSSSINILLIGIAICDLLYMLSILIWELFFFII 59 (318)
T ss_pred EeHHHHHHHHHHhhhcC-ChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35689999988776665 456675 899999999999999999998888765543
No 29
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=94.76 E-value=0.15 Score=45.37 Aligned_cols=26 Identities=8% Similarity=0.254 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHHH
Q psy3981 89 AKVALMTISLWFLAWTPYLVINFGGI 114 (276)
Q Consensus 89 ~k~l~~vv~~F~icw~Py~i~~l~~~ 114 (276)
-+-.+-++++|.+||+|..+-.++..
T Consensus 243 K~kFf~I~lVF~iCWlpNIINg~LL~ 268 (405)
T PF02101_consen 243 KIKFFKIMLVFYICWLPNIINGSLLF 268 (405)
T ss_pred HHHHHHHHHHHHHHhhhhhHhHHHHH
Confidence 33456788999999999988766543
No 30
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=93.98 E-value=0.43 Score=41.80 Aligned_cols=102 Identities=15% Similarity=0.171 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHhchhHHHHH
Q psy3981 31 FYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVIN 110 (276)
Q Consensus 31 ~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~Py~i~~ 110 (276)
....++...-..+..+++.++++.+++.++++.+ +..++.|++.+.+.+=.++-.+|-+|-.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~---------------~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~ 260 (303)
T PF10327_consen 196 ILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISK---------------QTYQKHKEAVRSLIAQFATSSICILPPFIFV 260 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344455566777788899999999877666542 2346778889988888888889999988877
Q ss_pred HHHHhccccccHHHHHHHHhhcccCccccccccccccC
Q psy3981 111 FGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQ 148 (276)
Q Consensus 111 l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~ 148 (276)
....++. +..+.....+.....++|.+|-++--..++
T Consensus 261 ~~~~~~~-~~~q~i~~~~~~~f~~HS~~n~ivli~t~p 297 (303)
T PF10327_consen 261 VVVIFEF-EDAQVISEICLAIFSSHSSVNMIVLIITTP 297 (303)
T ss_pred hhheecC-CCcHHHHHHHHHHHHHhhHhhheeeeEcCc
Confidence 7655543 334455566666777888888777654443
No 31
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=93.83 E-value=0.34 Score=42.59 Aligned_cols=101 Identities=15% Similarity=0.182 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHhchhHH
Q psy3981 28 YLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYL 107 (276)
Q Consensus 28 y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~Py~ 107 (276)
|.-......-++-...+.++|..+...++++.+.. .+++..++++++.-...++.+...+.++=|.
T Consensus 195 Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~--------------~s~~~~k~~~qI~iQs~iIC~f~~i~a~iyv 260 (313)
T PF10321_consen 195 YSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYS--------------TSSQLSKAQRQIFIQSVIICFFHAIAAVIYV 260 (313)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--------------cchhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333334446677889999999988754332 2233446677777777777777777666554
Q ss_pred HHHHHHHhccccccHHHHHHHHhhcccCccccccccccccC
Q psy3981 108 VINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQ 148 (276)
Q Consensus 108 i~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~ 148 (276)
...+. +.++++..+....--.|+..||+||-..|+
T Consensus 261 ~m~f~------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNr 295 (313)
T PF10321_consen 261 YMQFF------PPPPWLIIIGQISWQLSHGCPPIIYLTLNR 295 (313)
T ss_pred eeeee------cccHHHHHHHHHHHhccCCccceEEEEECH
Confidence 44333 356777788888888999999999976664
No 32
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=93.67 E-value=0.21 Score=43.80 Aligned_cols=65 Identities=17% Similarity=0.287 Sum_probs=48.7
Q ss_pred chhhHHHHHHHHHHHHhhhhhhhhhhhh---hccCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhh
Q psy3981 155 LWYQALGLTMICLGTMSMVGNGIVVYIF---LCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCF 219 (276)
Q Consensus 155 ~~~~~l~~~~~~~~~~~~~~n~~vi~~~---~~~~~~~~~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~ 219 (276)
..+.++.++.....++|++||+.++.+- +.+++.-.|.+..+.+||++.++.-....-......+
T Consensus 4 ~~~~i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~ 71 (303)
T PF05296_consen 4 SLEIIFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFF 71 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667788899999999999988775 3455556799999999999998877665544444443
No 33
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=90.95 E-value=0.49 Score=41.44 Aligned_cols=55 Identities=20% Similarity=0.285 Sum_probs=48.0
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCChhHHHHHHHHHHHHHHHhhh
Q psy3981 156 WYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSM 210 (276)
Q Consensus 156 ~~~~l~~~~~~~~~~~~~~n~~vi~~~~~~~~~~~~~~~~l~nLa~~Dl~~~~~~ 210 (276)
....+..+..+..+++++|-..++..++..|++|++.+-++.-++++|++.....
T Consensus 5 ~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~ 59 (303)
T PF05462_consen 5 QIRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVAS 59 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 3455667778889999999999999999999999999999999999999877544
No 34
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=90.34 E-value=1.9 Score=37.46 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhccccccHHHHHHHHhhcccCcccccccccc
Q psy3981 82 TSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAI 145 (276)
Q Consensus 82 ~~~~~k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~ 145 (276)
++..++..|.+.+=...=.++..|-....++..++..+ .+........+..+-+.+||+++-.
T Consensus 219 k~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~P~itl~ 281 (292)
T PF10317_consen 219 KSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGYE-HPFLEYLIFMLASLPPLIDPLITLY 281 (292)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhchHhhee
Confidence 35567788888888888888888777766666554433 4444555556677788899999743
No 35
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=87.66 E-value=1.3 Score=36.32 Aligned_cols=64 Identities=19% Similarity=0.274 Sum_probs=41.0
Q ss_pred HHhhhhhhhhhhhhh-ccCCCCChhHHHHHHHHHHHHHHHhhhhhhHHHHhhcccccccccccee
Q psy3981 169 TMSMVGNGIVVYIFL-CTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCEL 232 (276)
Q Consensus 169 ~~~~~~n~~vi~~~~-~~~~~~~~~~~~l~nLa~~Dl~~~~~~~p~~~~~~~~~~w~~g~~~C~~ 232 (276)
.+++++-..++..+. ..++.+.-.+-++.||.++|++.++..+.........+.-.-+...|..
T Consensus 12 ~lSlls~~~~l~~~~~~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l~~~~i~~~s~~C~a 76 (201)
T PF11710_consen 12 ALSLLSSLAVLYLFFFITYRRRSFRHQLILNLLLADFIQALAFLISPIRWLARGGIIAPSPFCQA 76 (201)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeCCCCchhh
Confidence 334444333333332 2345566777799999999999999876645555554444456788888
No 36
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=87.34 E-value=0.82 Score=39.18 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHhhh-hhhHHHHhhccccccccccceeeeeecCc
Q psy3981 187 NLRTPSNILVVNLAFSDFCMMFSM-APTMVLNCFYETWTLGPFMCELYGMLGHP 239 (276)
Q Consensus 187 ~~~~~~~~~l~nLa~~Dl~~~~~~-~p~~~~~~~~~~w~~g~~~C~~y~aI~~P 239 (276)
+...|++..+.+||++++++.++- +|...... +...++|.+||+...+.+-
T Consensus 6 ~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~--~~~~~~d~gCK~v~Y~~RV 57 (265)
T PF03402_consen 6 HRLKPIDLILIHLALANILVLLSRGIPQTMAFF--GWKFFDDIGCKIVFYIYRV 57 (265)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHh--hcccCCCceeeeeeeehHH
Confidence 456799999999999999888654 46443322 2224699999984444443
No 37
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=86.21 E-value=4.3 Score=34.74 Aligned_cols=94 Identities=12% Similarity=0.094 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhccccc
Q psy3981 41 LILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEI 120 (276)
Q Consensus 41 l~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~~~~ 120 (276)
.+++..++..++.++++.+++.+ ...++.++++|+|.+..+....--..|.+.+.=|....-+. +
T Consensus 170 ~~~~~~lni~t~ikl~~~~~~~~---------~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~---~--- 234 (274)
T PF10328_consen 170 VIISNILNIITFIKLRKFRKKIS---------VSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS---S--- 234 (274)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcc---------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c---
Confidence 55667788888888887655541 11123345567788999999988888988888776654331 1
Q ss_pred cHHHHHHHHhh-cccCccccccccccccCC
Q psy3981 121 NPLITIWGSVF-AKANAVYNPIVYAIRYQY 149 (276)
Q Consensus 121 ~~~~~~~~~~l-~~~ns~~NPiIY~~~~~~ 149 (276)
.++...+...+ -.+..++|++++-..|+|
T Consensus 235 ~~~~~F~~~t~~w~~~h~~DG~i~l~fN~~ 264 (274)
T PF10328_consen 235 NRWWQFFCTTFSWVLVHALDGLIMLIFNSE 264 (274)
T ss_pred ccHHHHHHHHHHHHHHHHhcceeEeEEcHH
Confidence 13333333322 345567899999777755
No 38
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=79.48 E-value=5.3 Score=35.20 Aligned_cols=56 Identities=14% Similarity=0.178 Sum_probs=47.8
Q ss_pred CchhhHHHHHHHHHHHHhhhhhhhhhhhhhccCCCCChhHHHHHHHHHHHHHHHhh
Q psy3981 154 PLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFS 209 (276)
Q Consensus 154 ~~~~~~l~~~~~~~~~~~~~~n~~vi~~~~~~~~~~~~~~~~l~nLa~~Dl~~~~~ 209 (276)
...+..+++.+.+..++..+-....+.++.+++..|+|.|-.+.=|++.|++....
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~ 84 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFI 84 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHh
Confidence 45677788888888888888899999998888888899999999999999987654
No 39
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=74.92 E-value=1.8 Score=37.69 Aligned_cols=99 Identities=9% Similarity=0.164 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHH-HHHhchhHHH
Q psy3981 30 IFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISL-WFLAWTPYLV 108 (276)
Q Consensus 30 i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~-F~icw~Py~i 108 (276)
.........+...++++|-.++.+++++..+. ..++.++-++|..|.+.+=.++ ++....|..+
T Consensus 198 ~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~---------------~S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~ 262 (307)
T PF10326_consen 198 MLIMCIIMSISFFIIIYCGIKIYKKIKKLSSI---------------MSSKTRKLQKQLFKALVIQTIIPFIFMYIPVFI 262 (307)
T ss_pred eeecchhHHhHHHHHHHHHhhhHHHHhccccc---------------cChhhHHHHHHHHHHHHHHhhhhheeeecchhh
Confidence 33444556778889999999999888532211 0223345566777766654433 5667889888
Q ss_pred HHHHHHhccccccHHHHHHHHhhcccCcccccccccc
Q psy3981 109 INFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAI 145 (276)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~ 145 (276)
..+...++-+. +........+..+-+++||++=-+
T Consensus 263 ~~~~p~~~i~~--~~~~~~~~~~~~~yP~iDpl~~i~ 297 (307)
T PF10326_consen 263 VFILPFFGIDL--GFFSNIISILISLYPAIDPLPVIF 297 (307)
T ss_pred eeeeeccCCCC--CccccHhhhhEEEEeehhhheeeE
Confidence 77766554221 122334455667788999987533
No 40
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=69.50 E-value=23 Score=23.71 Aligned_cols=37 Identities=16% Similarity=0.406 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHH
Q psy3981 28 YLIFYGFFVYFVPLILII-YAYYFIVRAVSVHEKQMRE 64 (276)
Q Consensus 28 y~i~~~~~~f~iPl~ii~-~~Y~~I~~~l~~~~~~~~~ 64 (276)
|..+..++..+.|++++. ++-.+..+.+.++.++...
T Consensus 20 ~~Fl~~vll~LtPlfiisa~lSwkLaK~ie~~ere~K~ 57 (74)
T PF15086_consen 20 YEFLTTVLLILTPLFIISAVLSWKLAKAIEKEEREKKK 57 (74)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566677888774 6777788888776655443
No 41
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=67.96 E-value=4.5 Score=35.01 Aligned_cols=41 Identities=12% Similarity=0.243 Sum_probs=28.6
Q ss_pred HhhhhhhhhhhhhhccCC----CCChhHHHHHHHHHHHHHHHhhh
Q psy3981 170 MSMVGNGIVVYIFLCTKN----LRTPSNILVVNLAFSDFCMMFSM 210 (276)
Q Consensus 170 ~~~~~n~~vi~~~~~~~~----~~~~~~~~l~nLa~~Dl~~~~~~ 210 (276)
++++-...+++.+.+.|+ ++++-+-++.+-+++|++..+..
T Consensus 7 ~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~ 51 (283)
T PF10323_consen 7 VTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFY 51 (283)
T ss_pred ehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555544433 67999999999999999887654
No 42
>KOG2575|consensus
Probab=61.40 E-value=8.7 Score=34.81 Aligned_cols=26 Identities=23% Similarity=0.649 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHhchhHHHH
Q psy3981 84 AEIKLAKVALMTISLWFLAWTPYLVI 109 (276)
Q Consensus 84 ~~~k~~k~l~~vv~~F~icw~Py~i~ 109 (276)
.-.|..|...+|+++|+++|.|+...
T Consensus 253 ~f~ri~~ia~~Vv~TF~iiw~P~~~~ 278 (510)
T KOG2575|consen 253 SFARIIKIALAVVGTFVIIWLPFLLS 278 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45688999999999999999998644
No 43
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=56.94 E-value=7.1 Score=32.55 Aligned_cols=49 Identities=18% Similarity=0.221 Sum_probs=4.3
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhccCCCCChhHHHHHHHHHHHHHHHhhh
Q psy3981 162 LTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSM 210 (276)
Q Consensus 162 ~~~~~~~~~~~~~n~~vi~~~~~~~~~~~~~~~~l~nLa~~Dl~~~~~~ 210 (276)
.+..+...+++++-.+.+......|++|+..+....||++++++..+..
T Consensus 5 ~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~ 53 (242)
T PF00002_consen 5 IISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSF 53 (242)
T ss_dssp HHHHHHHH-----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHH
Confidence 4445556667777666677777778889888999999999998877654
No 44
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=53.84 E-value=12 Score=32.33 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhccC-CCCChhHHHHHHHHHHHHHHHhhh
Q psy3981 163 TMICLGTMSMVGNGIVVYIFLCTK-NLRTPSNILVVNLAFSDFCMMFSM 210 (276)
Q Consensus 163 ~~~~~~~~~~~~n~~vi~~~~~~~-~~~~~~~~~l~nLa~~Dl~~~~~~ 210 (276)
++.+...+|++.|.+++..+.++. +.-....+++.|-|+.|++..+..
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~ 52 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISA 52 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778899999999998876544 444567799999999999888665
No 45
>KOG3827|consensus
Probab=51.80 E-value=31 Score=31.02 Aligned_cols=96 Identities=11% Similarity=0.061 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHhcccc--ccHHHHHHHHhhcccCccccccccccccCCCC-----CCCchhhH
Q psy3981 87 KLAKVALMTISLWFLAWTPYLVINFGGILEMVE--INPLITIWGSVFAKANAVYNPIVYAIRYQYPP-----MHPLWYQA 159 (276)
Q Consensus 87 k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~~~--~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~~~-----~~~~~~~~ 159 (276)
|--.|+++-.+.|++.|+=|.++..+.++...+ ..+.-...+.+...++|...-++|+.-.|--. ...+.-..
T Consensus 61 kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV~nV~sf~sAFLFSiETQtTIGYG~R~vTeeCP~ 140 (400)
T KOG3827|consen 61 KWRWMLLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCVMNVHSFTSAFLFSIETQTTIGYGFRYVTEECPE 140 (400)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcceeeccchhhhheeeeeeeeeeeccccccCccChH
Confidence 556678888899999999988877766654333 22211223457788899999999977665321 11111112
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhh
Q psy3981 160 LGLTMICLGTMSMVGNGIVVYIF 182 (276)
Q Consensus 160 l~~~~~~~~~~~~~~n~~vi~~~ 182 (276)
-.+.+.+=.++|++-|..++.++
T Consensus 141 aI~ll~~Q~I~g~ii~afm~G~i 163 (400)
T KOG3827|consen 141 AIFLLVLQSILGVIINAFMVGAI 163 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334455778888888877665
No 46
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=50.69 E-value=1.8e+02 Score=25.68 Aligned_cols=61 Identities=11% Similarity=0.293 Sum_probs=38.0
Q ss_pred CchhHHHHHHHHHHHHHH-HHHhchhHHHHHHHHHhccccccHHHHHHHHhhcccCccccccc
Q psy3981 81 GTSAEIKLAKVALMTISL-WFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIV 142 (276)
Q Consensus 81 ~~~~~~k~~k~l~~vv~~-F~icw~Py~i~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiI 142 (276)
..+-+++..|.+.+=++. -++|+.|-.+......++ .+...+...........=+.+||+.
T Consensus 237 T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~-i~~~~~~n~~~~iAls~FPf~DPlA 298 (310)
T PF10319_consen 237 TKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFG-IDLGRWNNYFSVIALSAFPFLDPLA 298 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHc-CChhHHHHHHHHHHHHHccccCchH
Confidence 345566677766654333 478888887776655555 3455566655555555567788864
No 47
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=48.65 E-value=67 Score=28.22 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHH
Q psy3981 40 PLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTIS 97 (276)
Q Consensus 40 Pl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~ 97 (276)
=.+.+++....+.+++|+.+.+.. ..+++++..|+|+-.+.+..++++
T Consensus 207 ~~~~iii~N~lm~~Klr~~k~~l~----------~~~~s~~~~KAE~SLT~Tmi~mli 254 (307)
T PF10322_consen 207 WMISIIILNILMFFKLRKLKSSLS----------SQRRSKQSRKAERSLTLTMISMLI 254 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccc----------chhhcccchhhheeHHHHHHHHHH
Confidence 355667788888888886542111 112233445667666666665554
No 48
>PF13853 7tm_4: Olfactory receptor
Probab=48.24 E-value=0.056 Score=41.85 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=40.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHhch
Q psy3981 25 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWT 104 (276)
Q Consensus 25 ~~~y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~ 104 (276)
+..+......+..+.|+.+++++|.+|.+.+.|.. ..+.++|+..+....+.+..+.+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~Il~SY~~Il~avlki~---------------------S~~~r~KAfsTC~sHL~vv~lfy~ 112 (144)
T PF13853_consen 54 NEIVGFVVAIFILLGPLLLILFSYIRILRAVLKIP---------------------SAEGRSKAFSTCSSHLTVVSLFYG 112 (144)
T ss_pred hheeeecccceeEEEEeeccccceeEEEehhhccc---------------------ccccccccccccccCceEEEEeee
Confidence 34455555556678999999999999999887521 123455777777665555555555
Q ss_pred hH
Q psy3981 105 PY 106 (276)
Q Consensus 105 Py 106 (276)
|.
T Consensus 113 ~~ 114 (144)
T PF13853_consen 113 TV 114 (144)
T ss_pred ee
Confidence 43
No 49
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=47.05 E-value=48 Score=23.74 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy3981 37 YFVPLILIIYAYYFIVRAVSVHEKQMREQA 66 (276)
Q Consensus 37 f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~ 66 (276)
++.+++++.+.|..+.|--+|+.++.++..
T Consensus 12 ll~~vl~~~ifyFli~RPQrKr~K~~~~ml 41 (97)
T COG1862 12 LLPLVLIFAIFYFLIIRPQRKRMKEHQELL 41 (97)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 344455667889988877776666555443
No 50
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=45.48 E-value=1.8e+02 Score=24.39 Aligned_cols=49 Identities=16% Similarity=0.204 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHhch
Q psy3981 37 YFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWT 104 (276)
Q Consensus 37 f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~ 104 (276)
+++-.++.++++....+++++.+++ ..+.|++..++..+..+++.+.-.
T Consensus 177 ~i~~~ii~i~~~~~~~~~l~~~~~~-------------------~~~~er~L~~is~~~~~~~~~~~~ 225 (275)
T PF02118_consen 177 FIIIIIITIITNIITYRRLRKLSKR-------------------IKSVERNLTIISFIISFVQLLIAI 225 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh-------------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445556677666666643321 224567777766666665554433
No 51
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.58 E-value=1e+02 Score=19.91 Aligned_cols=36 Identities=8% Similarity=0.138 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy3981 28 YLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMR 63 (276)
Q Consensus 28 y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~ 63 (276)
..+..+.+++++-.++....+.+.-+.+++..++.+
T Consensus 23 ~il~~f~~G~llg~l~~~~~~~~~r~~~~~~~k~l~ 58 (68)
T PF06305_consen 23 LILIAFLLGALLGWLLSLPSRLRLRRRIRRLRKELK 58 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544444444444433
No 52
>PF02076 STE3: Pheromone A receptor; InterPro: IPR001499 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). Little is known about the structure and function of the mating factor receptors, STE2 and STE3. It is believed, however, that they are integral membrane proteins that may be involved in the response to mating factors on the cell membrane [, , ]. The amino acid sequences of both receptors contain high proportions of hydrophobic residues grouped into 7 domains, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins. However, while a similar 3D framework has been proposed to account for this, there is no significant sequence similarity either between STE2 and STE3, or between these and the rhodopsin-type family: the receptors thus bear their own unique '7TM' signatures. The STE3 gene of Saccharomyces cerevisiae (Baker's yeast) is the cell-surface receptor that binds the 13-residue lipopeptide a-factor. Several related fungal pheromone receptor sequences are known: these include pheromone B alpha 1 and B alpha 3, and pheromone B beta 1 receptors from Schizophyllum commune; pheromone receptor 1 from Ustilago hordei; and pheromone receptors 1 and 2 from Ustilago maydis. Members of the family share about 20% sequence identity.; GO: 0004932 mating-type factor pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=38.34 E-value=2.6e+02 Score=24.20 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHH
Q psy3981 87 KLAKVALMTISLWFLAWTPYLVINFGGI 114 (276)
Q Consensus 87 k~~k~l~~vv~~F~icw~Py~i~~l~~~ 114 (276)
|-.| +.++.++.+++.+|..+..++..
T Consensus 196 Rf~R-L~~la~~~i~~~~P~~i~~~v~n 222 (283)
T PF02076_consen 196 RFFR-LLALALVIILIYLPLSIYYLVSN 222 (283)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 56667788899999999998843
No 53
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=37.48 E-value=42 Score=25.54 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhcc
Q psy3981 83 SAEIKLAKVALMTISLWFLAWTPYLVINFGGILEM 117 (276)
Q Consensus 83 ~~~~k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~ 117 (276)
+..++.....++....|++|++=++...-...+++
T Consensus 32 ~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g 66 (133)
T PF04238_consen 32 KLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGG 66 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 45667777888888999999987776533333333
No 54
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=33.46 E-value=2e+02 Score=25.03 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHhchhH
Q psy3981 27 SYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPY 106 (276)
Q Consensus 27 ~y~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~Py 106 (276)
.-.+....+.+.+|..+ ...|..+..++-... +....+.|.+.+|....+.++|- .+-
T Consensus 186 ~IqiiE~ilQ~~IPi~I-l~iYiAIIiKI~~MK------------------kssLnK~Ei~ILKQAifIFvlFQ---~ss 243 (305)
T PF04789_consen 186 GIQIIEIILQFGIPIFI-LVIYIAIIIKIIKMK------------------KSSLNKNEITILKQAIFIFVLFQ---ASS 243 (305)
T ss_pred chhHHHHHHHHhHHHHH-HHHHHHHHHHHHHHh------------------hccCCchhHHHHHHHHHHHHHHH---HHH
Confidence 34567788999999876 566776666554211 12334568888888776655553 333
Q ss_pred HHHHHHHHhccccc-cHHHHHHHHhhcccCccccccccccccCC
Q psy3981 107 LVINFGGILEMVEI-NPLITIWGSVFAKANAVYNPIVYAIRYQY 149 (276)
Q Consensus 107 ~i~~l~~~~~~~~~-~~~~~~~~~~l~~~ns~~NPiIY~~~~~~ 149 (276)
.+..+-+...-... .-....+...+--.-.+.-|...-+.++|
T Consensus 244 ~VFl~~qt~~~~~~tAFlIKR~iNT~ei~agaatP~ffffTs~e 287 (305)
T PF04789_consen 244 CVFLLCQTFKFNVATAFLIKRIINTMEIFAGAATPCFFFFTSKE 287 (305)
T ss_pred HHHHhheeeeecchHHHHHHHHHHHHHHHhhccCCeEEEEehHH
Confidence 33222222211111 11222233333444455666666555543
No 55
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=32.85 E-value=97 Score=21.44 Aligned_cols=25 Identities=16% Similarity=0.436 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHh
Q psy3981 43 LIIYAYYFIVRAVSVHEKQMREQAK 67 (276)
Q Consensus 43 ii~~~Y~~I~~~l~~~~~~~~~~~~ 67 (276)
++++.|..+.+--+|+.++.++..+
T Consensus 12 ~~~i~yf~~~rpqkK~~k~~~~m~~ 36 (84)
T TIGR00739 12 IFLIFYFLIIRPQRKRRKAHKKLIE 36 (84)
T ss_pred HHHHHHHheechHHHHHHHHHHHHH
Confidence 3557787777766666655554433
No 56
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=32.71 E-value=45 Score=21.49 Aligned_cols=22 Identities=14% Similarity=0.224 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhch
Q psy3981 83 SAEIKLAKVALMTISLWFLAWT 104 (276)
Q Consensus 83 ~~~~k~~k~l~~vv~~F~icw~ 104 (276)
++.+|...+++.++++|++-|+
T Consensus 33 k~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 33 KRMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566667766666665553
No 57
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=30.28 E-value=38 Score=29.37 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=29.9
Q ss_pred HHHHHHhhhhhhhhhhhhhccCCCCChhH-HHHHHHHHHHHHHHhhh
Q psy3981 165 ICLGTMSMVGNGIVVYIFLCTKNLRTPSN-ILVVNLAFSDFCMMFSM 210 (276)
Q Consensus 165 ~~~~~~~~~~n~~vi~~~~~~~~~~~~~~-~~l~nLa~~Dl~~~~~~ 210 (276)
.+.++++++.|.+.+..+.++.+.+.=.| +++.-.|+.|+..+..-
T Consensus 6 ~~~~~~s~~~N~~Li~Li~~~s~k~~G~Yk~Lm~~fs~~~i~fs~~~ 52 (307)
T PF10326_consen 6 YIGFVLSLFLNSLLIYLILTKSPKSLGSYKYLMIYFSIFEIIFSILD 52 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEehhHHHHHHHHHHH
Confidence 35678899999999988765443332222 45555677777766543
No 58
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=29.58 E-value=1e+02 Score=22.80 Aligned_cols=23 Identities=9% Similarity=0.376 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHH
Q psy3981 39 VPLILIIYAYYFIVRAVSVHEKQ 61 (276)
Q Consensus 39 iPl~ii~~~Y~~I~~~l~~~~~~ 61 (276)
+|+++++..|..++|--+|+.++
T Consensus 7 l~~vv~~~i~yf~iRPQkKr~Ke 29 (113)
T PRK06531 7 IMFVVMLGLIFFMQRQQKKQAQE 29 (113)
T ss_pred HHHHHHHHHHHheechHHHHHHH
Confidence 34444443333344444443333
No 59
>COG3771 Predicted membrane protein [Function unknown]
Probab=27.50 E-value=2.2e+02 Score=19.91 Aligned_cols=41 Identities=10% Similarity=0.059 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhh
Q psy3981 29 LIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKM 69 (276)
Q Consensus 29 ~i~~~~~~f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~ 69 (276)
.-..+..+|.+--++-..+|.+.-..++|-.|++++++.+.
T Consensus 45 la~lF~~G~~lgwli~g~fy~k~~l~~~~l~rqiKr~~~q~ 85 (97)
T COG3771 45 LATLFAAGFALGWLICGLFYLKVRLSLMRLERQIKRLENQL 85 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34556778888888889999999888887777776655443
No 60
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=27.48 E-value=78 Score=29.63 Aligned_cols=27 Identities=22% Similarity=0.443 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhchhHHHH
Q psy3981 83 SAEIKLAKVALMTISLWFLAWTPYLVI 109 (276)
Q Consensus 83 ~~~~k~~k~l~~vv~~F~icw~Py~i~ 109 (276)
..-+|..+.-.+|+++|+++|.|+...
T Consensus 218 ~~~~~~~~lg~~Vi~~f~~~~~PF~~~ 244 (469)
T PF03155_consen 218 FSIKRLIKLGIVVIATFALSFGPFLYS 244 (469)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999644
No 61
>KOG4193|consensus
Probab=26.90 E-value=1.9e+02 Score=28.10 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHhch
Q psy3981 37 YFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWT 104 (276)
Q Consensus 37 f~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~ 104 (276)
|+.|..+|+.++..++...-++-.+... ......++..+.+..+..++...++-+.|.
T Consensus 474 F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~----------~~~~~~~~~~~~~~~~~~l~L~~lLGlTW~ 531 (610)
T KOG4193|consen 474 FLGPVTLIILVNIVMFVVTLKKLLRRLS----------KLQPIASKLENISLIRSALALLFLLGLTWI 531 (610)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHhhccc----------ccCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888777776665544332221110 001111112222567777777777777775
No 62
>KOG4255|consensus
Probab=25.71 E-value=1.1e+02 Score=27.45 Aligned_cols=76 Identities=14% Similarity=0.050 Sum_probs=43.9
Q ss_pred ccccccccccccCCCCCCCchhhHHHHHHHHHHHHhhhhhhhhh--hh--hhccCCCC-ChhHHHHHHHHHHHHHHHhhh
Q psy3981 136 AVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGTMSMVGNGIVV--YI--FLCTKNLR-TPSNILVVNLAFSDFCMMFSM 210 (276)
Q Consensus 136 s~~NPiIY~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~~vi--~~--~~~~~~~~-~~~~~~l~nLa~~Dl~~~~~~ 210 (276)
.++-|.||..+.+..+.......+.++.. . .+.++-.... |- -+....+| -+.+.+..-||+.|-....+.
T Consensus 58 a~lgpLi~tllhk~~~~~i~~VPiif~ll-~---~a~v~~l~laflW~~ts~V~g~~hS~afl~L~F~LAivdc~SnVtF 133 (439)
T KOG4255|consen 58 ANLGPLIVTLLHKGAPGTIPTVPIIFVLL-L---LACVCQLGLAFLWHDTSPVFGALHSWAFLSLLFGLAIVDCTSNVTF 133 (439)
T ss_pred HcchhHHHHHHHhhCCCcCCCCCchhHHH-H---HHHHHHHHHHHHHhcchhhhcCcchHHHHHHHHHHHHHHhhccchh
Confidence 35789999988887654444333333222 1 2222222111 10 01122345 478889999999999888888
Q ss_pred hhhHH
Q psy3981 211 APTMV 215 (276)
Q Consensus 211 ~p~~~ 215 (276)
+|++.
T Consensus 134 LPFMs 138 (439)
T KOG4255|consen 134 LPFMS 138 (439)
T ss_pred hhhhh
Confidence 88774
No 63
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=25.58 E-value=1.2e+02 Score=20.78 Aligned_cols=20 Identities=20% Similarity=0.635 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q psy3981 42 ILIIYAYYFIVRAVSVHEKQ 61 (276)
Q Consensus 42 ~ii~~~Y~~I~~~l~~~~~~ 61 (276)
+++.+.|..+.+--+|+.++
T Consensus 10 ~~~~i~yf~~~rpqkk~~k~ 29 (82)
T PF02699_consen 10 IIFVIFYFLMIRPQKKQQKE 29 (82)
T ss_dssp HHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHhhheecHHHHHHHH
Confidence 45566677666655544443
No 64
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=25.35 E-value=2.1e+02 Score=20.98 Aligned_cols=24 Identities=25% Similarity=0.402 Sum_probs=12.7
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhHHH
Q psy3981 38 FVPLIL-IIYAYYFIVRAVSVHEKQ 61 (276)
Q Consensus 38 ~iPl~i-i~~~Y~~I~~~l~~~~~~ 61 (276)
++|+++ +++.|..+.|--+|+.++
T Consensus 7 ll~lv~i~~i~yF~~iRPQkKr~K~ 31 (109)
T PRK05886 7 FLPFLLIMGGFMYFASRRQRKAMQA 31 (109)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHH
Confidence 345544 456677666554444443
No 65
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=25.08 E-value=24 Score=29.30 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhchhH
Q psy3981 87 KLAKVALMTISLWFLAWTPY 106 (276)
Q Consensus 87 k~~k~l~~vv~~F~icw~Py 106 (276)
+..|........+.++|...
T Consensus 195 ~~~~~~~~L~~llg~~w~~~ 214 (242)
T PF00002_consen 195 KILRASLILLPLLGITWLFG 214 (242)
T ss_dssp --------------------
T ss_pred hHHHHHHHHHHHHHHHheee
Confidence 46777777778888889873
No 66
>COG3924 Predicted membrane protein [Function unknown]
Probab=21.97 E-value=2.4e+02 Score=18.98 Aligned_cols=27 Identities=11% Similarity=0.504 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3981 28 YLIFYGFFVYFVPLILIIYAYYFIVRA 54 (276)
Q Consensus 28 y~i~~~~~~f~iPl~ii~~~Y~~I~~~ 54 (276)
+-...-..++.+|++.++.||..|-..
T Consensus 42 fP~WFE~aCi~lPllFi~l~~~mvkfi 68 (80)
T COG3924 42 FPLWFEMACILLPLLFIVLCWAMVKFI 68 (80)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455667889999999999866433
No 67
>KOG4564|consensus
Probab=21.07 E-value=1.5e+02 Score=27.84 Aligned_cols=90 Identities=14% Similarity=0.174 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhcccccccCCCCCchhHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhcc
Q psy3981 38 FVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEM 117 (276)
Q Consensus 38 ~iPl~ii~~~Y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~Py~i~~l~~~~~~ 117 (276)
++++++-.+.-.+|.+.+-++-| .++.......+|++|-.++.+=+|-+- .++..+.+
T Consensus 317 ~~ai~vNf~flinIvrILv~KLr---------------~~~~~~~~~y~K~vKaTLvLIPLfGI~-------~ilf~~~P 374 (473)
T KOG4564|consen 317 LLAILVNFIFLINIVRILVTKLR---------------ASNASETDQYRKLVKATLVLIPLFGIH-------YILFAFRP 374 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc---------------CccccchHHHHHHHHHHHHHHHHcCCe-------eEEEEecC
Q ss_pred cc--ccHHHHHHHHhhcccCccccccccccccCC
Q psy3981 118 VE--INPLITIWGSVFAKANAVYNPIVYAIRYQY 149 (276)
Q Consensus 118 ~~--~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~ 149 (276)
++ ...........|......+=-++|+|.|.|
T Consensus 375 ~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~E 408 (473)
T KOG4564|consen 375 DEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGE 408 (473)
T ss_pred chHHHHHHHHHHHHHHHhccchheehheeecCHH
No 68
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=20.34 E-value=1.8e+02 Score=25.37 Aligned_cols=64 Identities=19% Similarity=0.274 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHhhhhhhhhhhhhhc-cCCCCChhHHHH---HHHHHHHHHHHhhhhhhHHHHhhcc
Q psy3981 158 QALGLTMICLGTMSMVGNGIVVYIFLC-TKNLRTPSNILV---VNLAFSDFCMMFSMAPTMVLNCFYE 221 (276)
Q Consensus 158 ~~l~~~~~~~~~~~~~~n~~vi~~~~~-~~~~~~~~~~~l---~nLa~~Dl~~~~~~~p~~~~~~~~~ 221 (276)
.++...+-++..++++-|.+.++.+.. .+++.+-.++++ +...+.|+-.+...-|.-+.-...|
T Consensus 9 ~~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~~ag 76 (303)
T PF10327_consen 9 QWLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPIPAG 76 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcceeEE
Confidence 345567888999999999999987654 556666555444 4478899999988878777655544
No 69
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=20.02 E-value=2.8e+02 Score=20.10 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=15.2
Q ss_pred HHHH-HHHHHHHHHHHHHHhHHHHHHHH
Q psy3981 40 PLIL-IIYAYYFIVRAVSVHEKQMREQA 66 (276)
Q Consensus 40 Pl~i-i~~~Y~~I~~~l~~~~~~~~~~~ 66 (276)
|+++ .++.|..+.|--+|+.++.++..
T Consensus 23 ~lvii~~i~yf~~~RpqkK~~k~~~~~~ 50 (106)
T PRK05585 23 PLVVFFAIFYFLIIRPQQKRQKEHKKML 50 (106)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4433 34567777776666655554433
Done!