RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3981
(276 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 81.6 bits (202), Expect = 3e-18
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 6 VPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQ 65
V EGN+T C D+ + RSY + + +PL++I+ Y I+R + + Q
Sbjct: 122 VEEGNVTTCLIDFPEESTK-RSYTLLSTLLGFVLPLLVILVCYTLILRTLRKRARSGASQ 180
Query: 66 AKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINF---GGILEMVEINP 122
A+ + S E K AK+ L+ + ++ L W PY ++ L + + P
Sbjct: 181 ARAKRSS----------SKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIWRLLP 230
Query: 123 LITIWGSVFAKANAVYNPIVY 143
+ A N+ NPI+Y
Sbjct: 231 TALLITLWLAYVNSCLNPIIY 251
Score = 54.2 bits (131), Expect = 1e-08
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 180 YIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCELYG 234
+ L TK LRTP+NI ++NLA +D + ++ P + W G +C+L G
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVG 55
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 39.6 bits (92), Expect = 0.001
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 138 YNPIVYA-IRYQYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILV 196
N I Y I + M+P + + + I + + + GN ++ I C K ++T ++I +
Sbjct: 78 ENNITYELINIKNKCMYPSISEYIKIFYIIIFILGLFGNAAIIMILFC-KKIKTITDIYI 136
Query: 197 VNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCEL 232
NLA SD + P ++ N F + W G FMC++
Sbjct: 137 FNLAISDLIFVIDF-PFIIYNEF-DQWIFGDFMCKV 170
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 35.5 bits (82), Expect = 0.019
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 170 MSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSD--FCMMFSMAPTMVLNCFYETWTLGP 227
+VGN IV+Y+ L ++TP +I ++NLA SD F M P + W+ G
Sbjct: 53 FGLVGNIIVIYV-LTKTKIKTPMDIYLLNLAVSDLLFVMTL---PFQIYYYILFQWSFGE 108
Query: 228 FMCELYGML 236
F C++ L
Sbjct: 109 FACKIVSGL 117
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 33.3 bits (77), Expect = 0.082
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 171 SMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSD-FC---------MMFSMAPTMVLNCFY 220
+ GN I++ + K LR+ + L+ +D C ++F+ CF
Sbjct: 4 GIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVLLFTGTQLTRNECFL 63
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor
Srx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srx is part of the Srg
superfamily of chemoreceptors. Chemoperception is one of
the central senses of soil nematodes like C. elegans
which are otherwise 'blind' and 'deaf'.
Length = 275
Score = 32.6 bits (75), Expect = 0.17
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 167 LGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFS 209
+ ++ N ++ YIFL +L+ IL N A S+ +
Sbjct: 3 ISLFGIILNWLIFYIFLKLPSLKNSFGILCANKAISNAIICTI 45
>gnl|CDD|233109 TIGR00739, yajC, preprotein translocase, YajC subunit. While
this protein is part of the preprotein translocase in
Escherichia coli, it is not essential for viability or
protein secretion. The N-terminus region contains a
predicted membrane-spanning region followed by a region
consisting almost entirely of residues with charged
(acidic, basic, or zwitterionic) side chains. This
small protein is about 100 residues in length, and is
restricted to bacteria; however, this protein is absent
from some lineages, including spirochetes and
Mycoplasmas [Protein fate, Protein and peptide
secretion and trafficking].
Length = 84
Score = 30.0 bits (68), Expect = 0.27
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 33 GFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEI--KLAK 90
F +PL+LI +YF++ + ++ R +A K + +L+ GD+ T I + K
Sbjct: 1 SFLTTLLPLVLIFLIFYFLI----IRPQRKRRKAHKKLIESLKKGDKVLTIGGIIGTVTK 56
Query: 91 VALMTISL 98
+A TI +
Sbjct: 57 IAENTIVI 64
>gnl|CDD|222418 pfam13853, 7tm_4, Olfactory receptor. The members of this family
are transmembrane olfactory receptors.
Length = 142
Score = 29.9 bits (68), Expect = 0.64
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 28 YLIFYGFFVYFVPLILIIYAYYFIVRAV 55
L+ + F+ F + I+ +Y I RAV
Sbjct: 57 LLLVFSGFLGFGCFVFIVISYVQIFRAV 84
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor
(SCF), leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. Kit signaling is
involved in major cellular functions including cell
survival, proliferation, differentiation, adhesion, and
chemotaxis. Mutations in Kit, which result in
constitutive ligand-independent activation, are found in
human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 31.0 bits (70), Expect = 0.67
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 210 MAPTMVLNCFY----ETWTLGPFMCELYGMLGHPKFRQALDKKFPSLV 253
MAP + NC Y + W+ G + E++ + P +D KF ++
Sbjct: 283 MAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVDSKFYKMI 330
>gnl|CDD|233234 TIGR01016, sucCoAbeta, succinyl-CoA synthetase, beta subunit. This
model is designated subfamily because it does not
discriminate the ADP-forming enzyme ((EC 6.2.1.5) from
the GDP_forming (EC 6.2.1.4) enzyme. The N-terminal half
is described by the CoA-ligases model (pfam00549). The
C-terminal half is described by the ATP-grasp model
(pfam02222). This family contains a split seen both in a
maximum parsimony tree (which ignores gaps) and in the
gap pattern near position 85 of the seed alignment.
Eukaryotic and most bacterial sequences are longer and
contain a region similar to TXQTXXXG. Sequences from
Deinococcus radiodurans, Mycobacterium tuberculosis,
Streptomyces coelicolor, and the Archaea are 6 amino
acids shorter in that region and contain a motif
resembling [KR]G [Energy metabolism, TCA cycle].
Length = 386
Score = 29.7 bits (67), Expect = 1.8
Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 31/127 (24%)
Query: 61 QMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEI 120
Q RE AKK+ + G+ A+I + + FL + +VEI
Sbjct: 159 QAREIAKKLGL----EGELVKQVADI------IKKLYQIFLEYD----------ASLVEI 198
Query: 121 NPL-ITIWGSVFA-------KANAVYNPIVYAIRYQYPPMHPLWYQA--LGLTMICL-GT 169
NPL IT G++ A NA++ Y P A GL + L G
Sbjct: 199 NPLVITKDGNLIALDAKLTIDDNALFRHPDLEEMRDYSQEDPREVLAKQWGLNYVALDGN 258
Query: 170 MSMVGNG 176
+ + NG
Sbjct: 259 IGCMVNG 265
>gnl|CDD|218520 pfam05241, EBP, Emopamil binding protein. Emopamil binding protein
(EBP) is as a gene that encodes a non-glycosylated type
I integral membrane protein of endoplasmic reticulum and
shows high level expression in epithelial tissues. The
EBP protein has emopamil binding domains, including the
sterol acceptor site and the catalytic centre, which
show Delta8-Delta7 sterol isomerase activity. Human
sterol isomerase, a homologue of mouse EBP, is suggested
not only to play a role in cholesterol biosynthesis, but
also to affect lipoprotein internalisation. In humans,
mutations of EBP are known to cause the genetic disorder
of X-linked dominant chondrodysplasia punctata (CDPX2).
This syndrome of humans is lethal in most males, and
affected females display asymmetric hyperkeratotic skin
and skeletal abnormalities.
Length = 193
Score = 28.4 bits (64), Expect = 3.1
Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Query: 14 CGTDYLTKDWHHRSY-----LIFYGFFVYF------VPLILIIYAYYFIVRAVSVHEK 60
T++L H R + L F+ +FV+ +P +L+ ++ + A S EK
Sbjct: 135 FATEWLDGFVHGREFSTPEPLYFWFYFVFMNSLWIVIPSLLLWQSWKELAAAFSQPEK 192
>gnl|CDD|188831 cd09447, LIM_LASP, The LIM domain of LIM and SH3 Protein (LASP).
The LIM domain of LIM and SH3 Protein (LASP): LASP
family contains two highly homologous members, LASP-1
and LASP-2. LASP contains a LIM motif at its amino
terminus, a src homology 3 (SH3) domains at its
C-terminal part, and a nebulin-like region in the
middle. LASP-1 and -2 are highly conserved in their LIM,
nebulin-like, and SH3 domains ,but differ significantly
at their linker regions. Both proteins are ubiquitously
expressed and involved in cytoskeletal architecture,
especially in the organization of focal adhesions.
LASP-1 and LASP-2, are important during early embryo-
and fetogenesis and are highly expressed in the central
nervous system of the adult. However, only LASP-1 seems
to participate significantly in neuronal differentiation
and plays an important functional role in migration and
proliferation of certain cancer cells while the role of
LASP-2 is more structural. The expression of LASP-1 in
breast tumors is increased significantly. As in other
LIM domains, this domain family is 50-60 amino acids in
size and shares two characteristic zinc finger motifs.
The two zinc fingers contain eight conserved residues,
mostly cysteines and histidines, which coordinately bond
to two zinc atoms. LIM domains function as adaptors or
scaffolds to support the assembly of multimeric protein.
Length = 53
Score = 26.2 bits (58), Expect = 3.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 212 PTMVLNCFYETWTLGPFMCELYGM 235
PT LNC + W G F CE+ GM
Sbjct: 10 PTEKLNCLDKIWHKGCFKCEVCGM 33
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 28.7 bits (64), Expect = 3.3
Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 165 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWT 224
I L ++GN +V+ + L K ++ + N+A SD ++FS P ++ N E W
Sbjct: 36 ILLFIFGLIGNVLVIAV-LIVKRFMFVVDVYLFNIAMSDLMLVFSF-PFIIHNDLNE-WI 92
Query: 225 LGPFMCEL 232
G FMC+L
Sbjct: 93 FGEFMCKL 100
>gnl|CDD|216633 pfam01660, Vmethyltransf, Viral methyltransferase. This RNA
methyltransferase domain is found in a wide range of
ssRNA viruses, including Hordei-, Tobra-, Tobamo-,
Bromo-, Clostero- and Caliciviruses. This
methyltransferase is involved in mRNA capping. Capping
of mRNA enhances its stability. This usually occurs in
the nucleus. Therefore, many viruses that replicate in
the cytoplasm encode their own. This is a specific
guanine-7-methyltransferase domain involved in viral
mRNA cap0 synthesis. Specificity for guanine 7 position
is shown by NMR in and in vivo role in cap synthesis.
Based on secondary structure prediction, the basic fold
is believed to be similar to the common AdoMet-dependent
methyltransferase fold. A curious feature of this
methyltransferase domain is that it together with
flanking sequences seems to have guanylyltransferase
activity coupled to the methyltransferase activity. The
domain is found throughout the so-called Alphavirus
superfamily, (including alphaviruses and several other
groups). It forms the defining, unique feature of this
superfamily.
Length = 305
Score = 28.4 bits (64), Expect = 3.5
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 3 ILYVPEGNLTACGT-DYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIV 52
+ P+G+L T W S + G F Y V + A++
Sbjct: 181 FHFYPDGHLGGSYTHPLNLLSWLTTSKITLPGGFTYTVERLESRGAHHLFK 231
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 28.6 bits (64), Expect = 4.0
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 210 MAPTMVLNCFYET----WTLGPFMCELYGMLGHPKFRQALDKKFPSLV 253
MAP + NC Y W+ G + E++ + +P +D KF L+
Sbjct: 210 MAPESIFNCVYTFESDVWSYGILLWEIFSLGSNPYPGMPVDSKFYKLI 257
>gnl|CDD|148412 pfam06791, TMP_2, Prophage tail length tape measure protein. This
family represents a conserved region located towards the
N-terminal end of prophage tail length tape measure
protein (TMP). TMP is important for assembly of phage
tails and involved in tail length determination. Mutated
forms TMP cause tail fibres to be shortened.
Length = 210
Score = 27.7 bits (62), Expect = 6.0
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 12/47 (25%)
Query: 46 YAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEIKLAKVA 92
YAYY Q ++A N A + +G+ +G +A +LA +A
Sbjct: 89 YAYY-----------QGAKEASAFNKALILTGNAAGVTAS-QLADMA 123
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 27.6 bits (62), Expect = 6.1
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 6/36 (16%)
Query: 210 MAPTMVLN----CFYETWTLGPFMCELYGMLGHPKF 241
+AP ++LN + W+LG + EL + G P F
Sbjct: 159 VAPEIILNKGYDFSVDYWSLGILLYEL--LTGRPPF 192
>gnl|CDD|224775 COG1862, YajC, Preprotein translocase subunit YajC [Intracellular
trafficking and secretion].
Length = 97
Score = 26.4 bits (59), Expect = 6.1
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 30 IFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEI--K 87
+ V + I Y+ I+R K+M+E + +N +L+ GD+ T I
Sbjct: 7 SGLVLLLPLVLIFAIF--YFLIIRP---QRKRMKEHQELLN--SLKKGDEVVTIGGIVGT 59
Query: 88 LAKVA 92
+ KV
Sbjct: 60 VTKVG 64
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins
implicates B0AT1 in more complex processes such as
glomerular structure, exocytosis, and blood pressure
control. The autosomal recessive disorder, Hartnup
disorder, is caused by mutations in B0AT1. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 581
Score = 27.9 bits (62), Expect = 6.2
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 151 PMHPLWYQALGLTMICLGTMSMVGN--GIVV 179
P+ PLW + + CLG SM GN G++V
Sbjct: 380 PLSPLWSVLFFIMLFCLGLSSMFGNMEGVLV 410
>gnl|CDD|216469 pfam01384, PHO4, Phosphate transporter family. This family
includes PHO-4 from Neurospora crassa which is a is a
Na(+)-phosphate symporter. This family also contains the
leukaemia virus receptor.
Length = 268
Score = 27.5 bits (62), Expect = 7.6
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 19/89 (21%)
Query: 109 INFGGILEMVE---INPLITIWGSVF---------AKANAVYNPIVYAIRYQYPPMHPLW 156
+N+GGIL++V ++PLI ++ A A I+ + + P W
Sbjct: 107 VNWGGILKIVLSWVLSPLIGGVAALMSFAHGANDVANAIGPIAAILISTGSVSSSVVPFW 166
Query: 157 YQALGLTMICLGT-------MSMVGNGIV 178
LG I LGT + VGN I
Sbjct: 167 VLLLGALAIALGTLTGGWRIIKTVGNKIT 195
>gnl|CDD|238889 cd01908, YafJ, Glutamine amidotransferases class-II
(Gn-AT)_YafJ-type. YafJ is a glutamine
amidotransferase-like protein of unknown function found
in prokaryotes, eukaryotes and archaea. YafJ has a
conserved structural fold similar to those of other
class II glutamine amidotransferases including
lucosamine-fructose 6-phosphate synthase (GLMS or GFAT),
glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). The YafJ fold is also somwhat similar
to the Ntn (N-terminal nucleophile) hydrolase fold of
the proteasomal alpha and beta subunits.
Length = 257
Score = 27.4 bits (61), Expect = 8.0
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 229 MCELYGMLGHPKFRQALDKKFP 250
MC L G G P + L +
Sbjct: 1 MCRLLGYSGAPIPLEPLLIRPS 22
>gnl|CDD|219843 pfam08442, ATP-grasp_2, ATP-grasp domain.
Length = 202
Score = 27.2 bits (61), Expect = 8.2
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 24/73 (32%)
Query: 54 AVSVHEKQMREQAKKMNVATLRSGDQSGTSAEI--KLAKVALMTISLWFLAWTPYLVINF 111
A + Q RE A K+ + G+ +A+I KL K+ F+
Sbjct: 151 ATGLTPYQAREIAFKLGL----EGELVKQAADIIKKLYKL--------FVERD------- 191
Query: 112 GGILEMVEINPLI 124
+VEINPL+
Sbjct: 192 ---ATLVEINPLV 201
>gnl|CDD|227699 COG5412, COG5412, Phage-related protein [Function unknown].
Length = 637
Score = 27.4 bits (61), Expect = 9.8
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 94 MTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIV 142
IS+ ++ G I+++ I P+I+ V PI+
Sbjct: 355 NIISIITRIID-FVRTIIGTIIDV--IGPIISTIADVIKIIFDGVKPII 400
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.139 0.444
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,973,031
Number of extensions: 1327266
Number of successful extensions: 2134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2123
Number of HSP's successfully gapped: 74
Length of query: 276
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 180
Effective length of database: 6,679,618
Effective search space: 1202331240
Effective search space used: 1202331240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.1 bits)