RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3981
(276 letters)
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 177 bits (449), Expect = 9e-53
Identities = 54/166 (32%), Positives = 96/166 (57%), Gaps = 8/166 (4%)
Query: 5 YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 64
Y EG L C DY+++D RS ++ +F P+++I + Y+ IV +VS HEK+M
Sbjct: 177 YTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAA 236
Query: 65 QAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGIL-EMVEINPL 123
AK++N LR Q+G +AE++LAK++++ +S + L+W+PY V+ + + P
Sbjct: 237 MAKRLNAKELRKA-QAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPY 295
Query: 124 ITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLGT 169
+FAKA+A++NP++Y++ HP + +A+ T + T
Sbjct: 296 AAQLPVMFAKASAIHNPMIYSV------SHPKFREAISQTFPWVLT 335
Score = 126 bits (318), Expect = 8e-34
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 147 YQYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM 206
++ + Y +LG+ + G + GNGIV+Y+F TK+L+TP+N+ ++NLAFSDF
Sbjct: 24 REFDQVPDAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTF 83
Query: 207 M-FSMAPTMVLNCFYETWTLGPFMCELYGMLG 237
+ P M ++CF + W G C++YG +G
Sbjct: 84 SLVNGFPLMTISCFLKKWIFGFAACKVYGFIG 115
Score = 31.8 bits (72), Expect = 0.23
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 232 LYGMLGHPKFRQALDKKFPSL--VCGTVESDSSSAASVQTNVT 272
+Y + HPKFR+A+ + FP + C + ++ +T +
Sbjct: 314 IYSVS-HPKFREAISQTFPWVLTCCQFDDKETEDDKDAETEIP 355
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 147 bits (373), Expect = 2e-42
Identities = 40/167 (23%), Positives = 77/167 (46%), Gaps = 22/167 (13%)
Query: 5 YVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQM 62
Y+PEG +CG DY T ++ ++ S++I+ + +PLI+I + Y +V V Q
Sbjct: 179 YIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQ 238
Query: 63 REQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGIL-EMVEIN 121
+E A AE ++ ++ ++ + + + W PY + F + +
Sbjct: 239 QESATTQ-------------KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFG 285
Query: 122 PLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLTMICLG 168
P+ + FAK +AVYNP++Y + M+ + + T+ C
Sbjct: 286 PIFMTIPAFFAKTSAVYNPVIYIM------MNKQFRNCMVTTLCCGK 326
Score = 121 bits (306), Expect = 1e-32
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 148 QYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMM 207
QY P + L M L + N + +Y+ + K LRTP N +++NLA +D M+
Sbjct: 29 QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV 88
Query: 208 FSMAPTMVLNCFYETWTLGPFMCELYGMLG 237
F T + + + GP C L G
Sbjct: 89 FGGFTTTLYTSLHGYFVFGPTGCNLEGFFA 118
Score = 28.5 bits (64), Expect = 2.3
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 232 LYGMLGHPKFRQALDKKFPSLVCGTVESDSSSAASVQT 269
+Y M+ + +FR + + ++S+ S
Sbjct: 306 IYIMM-NKQFRNCMVTTLCCGKNPLGDDEASTTVSKTE 342
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 68.2 bits (167), Expect = 2e-13
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 147 YQYPPMHPLWYQAL---GLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSD 203
+ P W L T+I + S+VGN +V++I L K +RT +N +VNLAF++
Sbjct: 21 EPNQFVQPAWQIVLWAAAYTVIVV--TSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAE 78
Query: 204 FCMMFSMAPTMVLNCFYETWTLGPFMCELYGML 236
M + W G F C+ +
Sbjct: 79 ASMAAFNTVVNFTYAVHNEWYYGLFYCKFHNFF 111
Score = 48.1 bits (115), Expect = 1e-06
Identities = 23/146 (15%), Positives = 58/146 (39%), Gaps = 16/146 (10%)
Query: 5 YVPEGNLTACGTDY--LTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQM 62
+ C ++ + + Y I +YF+PL++I YAY + ++ ++
Sbjct: 171 TETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGI--TLWASEI 228
Query: 63 REQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPY----LVINFGGILEMV 118
+ + + + K+ K+ ++ + + + W P+ L+ L +
Sbjct: 229 PGDSSDRYHEQVSA--------KRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLK 280
Query: 119 EINPLITIWGSVFAKANAVYNPIVYA 144
+ + + A ++ +YNPI+Y
Sbjct: 281 KFIQQVYLAIMWLAMSSTMYNPIIYC 306
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 67.0 bits (163), Expect = 8e-13
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Query: 150 PPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MF 208
P + L L ++++GN +V+ ++L+T +N + +LA +D + +F
Sbjct: 16 SPYKTFEVVFIVLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVF 75
Query: 209 SMAPTMVLNCFYETWTLGPFMCELY 233
SM L W LGP +C+L+
Sbjct: 76 SM-NLYTLYTVIGYWPLGPVVCDLW 99
Score = 32.4 bits (73), Expect = 0.17
Identities = 8/60 (13%), Positives = 18/60 (30%)
Query: 24 HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS 83
+ + +++P+I++ Y+ I RA + D G
Sbjct: 182 SNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYY 241
Score = 28.5 bits (63), Expect = 2.3
Identities = 15/64 (23%), Positives = 24/64 (37%)
Query: 82 TSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPI 141
S E K+ + L + + + W PY V+ I + G N+ NP
Sbjct: 380 PSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPA 439
Query: 142 VYAI 145
YA+
Sbjct: 440 CYAL 443
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 66.4 bits (161), Expect = 1e-12
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 151 PMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSM 210
+ + I + ++ N V+ TK P + NLA SD +
Sbjct: 57 ADKENSIKLTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAY 116
Query: 211 APTMVLNCFYETWTLGPFMCELY 233
++L+ T+ L P L
Sbjct: 117 TANLLLS-GATTYKLTPAQWFLR 138
Score = 29.1 bits (64), Expect = 1.7
Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 2/89 (2%)
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGIL--EM 117
++ S +S + L K ++ +S++ W P ++ +
Sbjct: 391 PNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVK 450
Query: 118 VEINPLITIWGSVFAKANAVYNPIVYAIR 146
+ V A N+ NPI+Y +
Sbjct: 451 TCDILFRAEYFLVLAVLNSGTNPIIYTLT 479
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 66.3 bits (161), Expect = 1e-12
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 150 PPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MF 208
+W +G+ M + + GN +V+ + L+T +N + +LA +D M +
Sbjct: 33 QQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLA 92
Query: 209 SMAPTMVLNCFYETWTLGPFMCELY 233
+ P + + WT G F CE +
Sbjct: 93 VV-PFGAAHILMKMWTFGNFWCEFW 116
Score = 33.1 bits (75), Expect = 0.10
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 2/96 (2%)
Query: 51 IVRAVSVHEKQMREQAKK--MNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLV 108
+ A S Q +AK+ T E K K + + + L W P+ +
Sbjct: 367 VNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFI 426
Query: 109 INFGGILEMVEINPLITIWGSVFAKANAVYNPIVYA 144
+N +++ I + I + N+ +NP++Y
Sbjct: 427 VNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC 462
Score = 31.6 bits (71), Expect = 0.32
Identities = 6/44 (13%), Positives = 18/44 (40%)
Query: 25 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKK 68
+++Y I ++VPL+++++ Y + +
Sbjct: 203 NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRID 246
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 65.1 bits (158), Expect = 3e-12
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 151 PMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFS 209
M L + + + +++ N +V+Y + L T N+ +V+L+ +D +
Sbjct: 2 TMASPQLMPLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVV 61
Query: 210 MAPTMVLNCFYETWTLGPFMCELY 233
M P +L W+LG +C +
Sbjct: 62 M-PMNILYLLMSKWSLGRPLCLFW 84
Score = 31.2 bits (70), Expect = 0.35
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 24 HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS 83
+ + +++P +L+++ Y I +AV H + D G
Sbjct: 167 DVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYY 226
Query: 84 A 84
Sbjct: 227 T 227
Score = 30.0 bits (67), Expect = 0.98
Identities = 13/63 (20%), Positives = 25/63 (39%)
Query: 83 SAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIV 142
+ E K AK ++ + L W PY + N + ++ N+ NP++
Sbjct: 366 NRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLI 425
Query: 143 YAI 145
Y +
Sbjct: 426 YPL 428
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 63.2 bits (153), Expect = 2e-11
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 150 PPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MF 208
P Y AL + L + GNG+V L + L+T +N LVV+LA +D +
Sbjct: 33 SQARPHAYYALSYCALILAIV--FGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATL 90
Query: 209 SMAPTMVLNCFYETWTLGPFMCELY 233
M + L W C+++
Sbjct: 91 VMPWVVYLEVTGGVWNFSRICCDVF 115
Score = 31.7 bits (71), Expect = 0.25
Identities = 4/46 (8%), Positives = 20/46 (43%)
Query: 25 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMN 70
+ ++I+ +++P + + Y I + ++ + +++
Sbjct: 194 NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRID 239
Score = 29.7 bits (66), Expect = 1.0
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 53 RAVSVHEKQMREQAKKMNVA--TLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVIN 110
A S Q +AK++ T E K ++ + + + + W P+ + +
Sbjct: 362 LAKSRWYNQTPNRAKRVITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTH 421
Query: 111 -FGGILEMVEINPLITIWGSVFAKANAVYNPIVYAI 145
+ ++P + + N+ NP++Y
Sbjct: 422 VLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTT 457
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 62.5 bits (152), Expect = 2e-11
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 164 MICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETW 223
+C+ ++GN +V+Y+ L ++T +NI + NLA +D ++ ++ P + W
Sbjct: 134 AVCV--GGLLGNCLVMYVILRHTKMKTATNIYIFNLALADTLVLLTL-PFQGTDILLGFW 190
Query: 224 TLGPFMC 230
G +C
Sbjct: 191 PFGNALC 197
Score = 59.4 bits (144), Expect = 2e-10
Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 18/144 (12%)
Query: 5 YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFV-YFVPLILIIYAYYFIVRAVSVHEKQMR 63
E C + T + F + VP+++I Y ++R
Sbjct: 265 AQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIR---------- 314
Query: 64 EQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPL 123
++ L SG + ++ ++ L+ ++++ WTP V L + +
Sbjct: 315 ----RLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSET 370
Query: 124 ---ITIWGSVFAKANAVYNPIVYA 144
I + + N+ NPI+YA
Sbjct: 371 AVAILRFCTALGYVNSCLNPILYA 394
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 61.9 bits (150), Expect = 4e-11
Identities = 20/90 (22%), Positives = 37/90 (41%), Gaps = 10/90 (11%)
Query: 149 YPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFC--- 205
+W +G+ M + + GN +V+ + L+T +N + +LA +D
Sbjct: 174 AYAADEVWVVGMGIVMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGL 233
Query: 206 --MMFSMAPTMVLNCFYETWTLGPFMCELY 233
+ F A ++ WT G F CE +
Sbjct: 234 AVVPFGAA-HILTKT----WTFGNFWCEFW 258
Score = 51.8 bits (124), Expect = 8e-08
Identities = 23/135 (17%), Positives = 57/135 (42%), Gaps = 18/135 (13%)
Query: 25 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSA 84
+++Y I ++VPL+++++ Y + + +++ + + +V L +Q G +
Sbjct: 345 NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTG 404
Query: 85 ------------EIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPL---ITIWGS 129
E K K + + + L W P+ ++N +++ I + W
Sbjct: 405 HGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNW-- 462
Query: 130 VFAKANAVYNPIVYA 144
N+ +NP++Y
Sbjct: 463 -IGYVNSGFNPLIYC 476
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 61.7 bits (149), Expect = 5e-11
Identities = 12/85 (14%), Positives = 33/85 (38%), Gaps = 4/85 (4%)
Query: 150 PPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MF 208
+ + + ++++GN +V + NL+ +N VV+LA +D + +
Sbjct: 14 GAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVL 73
Query: 209 SMAPTMVLNCFYETWTLGPFMCELY 233
++ + ++ + C
Sbjct: 74 AIPFAITIS---TGFCAACHGCLFI 95
Score = 35.5 bits (81), Expect = 0.015
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 22 DWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQS 80
D +Y++++ FF VPL+L++ Y I A + D
Sbjct: 185 DVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTE 244
Query: 81 GTS 83
G
Sbjct: 245 GYY 247
Score = 35.1 bits (80), Expect = 0.022
Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 53 RAVSVHEKQMREQAKKMNVATLRSGDQSGTSA---EIKLAKVALMTISLWFLAWTPYLVI 109
A S Q +AK++ + S E+ AK + + L+ L W P +I
Sbjct: 355 LAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHII 414
Query: 110 NFGGIL--EMVEINPLITIWGSVFAKANAVYNPIVYAIRYQ 148
N + + V + N+V NP +YA R +
Sbjct: 415 NCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIR 455
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 61.2 bits (148), Expect = 7e-11
Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 164 MICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETW 223
++C+ + + GN +V+Y+ + ++T +NI + NLA +D ++ P +N TW
Sbjct: 26 IVCV--VGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTL-PFQSVNYLMGTW 82
Query: 224 TLGPFMCELYGML 236
G +C++ +
Sbjct: 83 PFGNILCKIVISI 95
Score = 38.1 bits (88), Expect = 0.003
Identities = 7/67 (10%), Positives = 19/67 (28%), Gaps = 1/67 (1%)
Query: 6 VPEGNLTACGTDYLTKDWHHRSYLIFYGFFV-YFVPLILIIYAYYFIVRAVSVHEKQMRE 64
C + W+ + L F + +P+++I Y ++ +
Sbjct: 158 KYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVRNIFEM 217
Query: 65 QAKKMNV 71
+
Sbjct: 218 LRIDEGL 224
Score = 31.9 bits (72), Expect = 0.20
Identities = 11/62 (17%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 87 KLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITI---WGSVFAKANAVYNPIVY 143
++ ++ L+ ++++ + WTP + L + T+ + N+ NP++Y
Sbjct: 380 RITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLY 439
Query: 144 AI 145
A
Sbjct: 440 AF 441
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 60.8 bits (147), Expect = 9e-11
Identities = 14/82 (17%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 154 PLWYQALGLT-MICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCM-MFSMA 211
P+ ++ +T + + ++++GN +V + NL+ +N VV+LA +D + + ++
Sbjct: 27 PIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP 86
Query: 212 PTMVLNCFYETWTLGPFMCELY 233
+ ++ + C
Sbjct: 87 FAITIS---TGFCAACHGCLFI 105
Score = 33.1 bits (75), Expect = 0.085
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 22 DWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQS 80
D +Y++++ FF VPL+L++ Y I A + + L+ +++
Sbjct: 195 DVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLE-DNWETLNDNLKVIEKA 253
Query: 81 GTSAEIKLAKVALMTISLWFLAWTP 105
+A++K A + +L TP
Sbjct: 254 DNAAQVKDALTKMRAAALDAQKATP 278
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 58.6 bits (142), Expect = 4e-10
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
Query: 151 PMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFC----- 205
+ W + L M + + + GN +V+ T+ L+T +N+ + +LA +D
Sbjct: 5 LLSQQWEAGMSLLMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLV 64
Query: 206 MMFSMAPTMVLNCFYETWTLGPFMCELY 233
+ F +V W G F+CEL+
Sbjct: 65 VPFGAT-LVVRGT----WLWGSFLCELW 87
Score = 49.0 bits (117), Expect = 5e-07
Identities = 25/119 (21%), Positives = 54/119 (45%), Gaps = 7/119 (5%)
Query: 26 RSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAE 85
R+Y I +++PL+++I+ + R +EQ +K++ A+ R + E
Sbjct: 175 RAYAIASSIISFYIPLLIMIFVALRVYREA-------KEQIRKIDRASKRKTSRVMLMRE 227
Query: 86 IKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYA 144
K K + + ++ L W P+ ++N + + + + + AN+ NPI+Y
Sbjct: 228 HKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC 286
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 56.1 bits (135), Expect = 3e-09
Identities = 17/74 (22%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Query: 163 TMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYET 222
++I L +VGNG+V+ + K LR+ ++ ++L+ +D + ++ P ++
Sbjct: 56 SIIFL--TGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITL-PFWAVDAVAN- 111
Query: 223 WTLGPFMCELYGML 236
W G F+C+ ++
Sbjct: 112 WYFGNFLCKAVHVI 125
Score = 37.6 bits (87), Expect = 0.003
Identities = 15/119 (12%), Positives = 28/119 (23%), Gaps = 24/119 (20%)
Query: 6 VPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQ 65
+ C Y W + + +P I+I+ Y I+ +S + E
Sbjct: 188 SEADDRYICDRFYPNDLWVV-VFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEM 246
Query: 66 AKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLI 124
+ L+ + Y I G +L
Sbjct: 247 LRIDEGLRLK-----------------------IYKDTEGYYTIGIGHLLTKSPSLNAA 282
Score = 27.2 bits (60), Expect = 6.3
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 73 TLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINP---------- 122
S + K K ++ I +F W PY + ++EI
Sbjct: 396 GTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVH 455
Query: 123 LITIWGSVFAKANAVYNPIVYA 144
A + NPI+YA
Sbjct: 456 KWISITEALAFFHCCLNPILYA 477
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.92
Identities = 30/184 (16%), Positives = 50/184 (27%), Gaps = 58/184 (31%)
Query: 65 QAKKMNVATLRSG-DQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFG-GILEMVEINP 122
Q + M G D TS + +W A + +G IL++V NP
Sbjct: 1627 QEQGM-------GMDLYKTSKAAQ---------DVWNRA-DNHFKDTYGFSILDIVINNP 1669
Query: 123 LITIWGSVFAKANAVYNPIVY--AIRYQYPPMHPLWYQALGLTMICLGTMSMVGNGIVVY 180
++ IR Y M ++ + + + Y
Sbjct: 1670 ----------VNLTIHFGGEKGKRIRENYSAM--IFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 181 IFLCTKNL--RT----PSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWTLGPFMCELYG 234
F K L T P+ + ++ A L ++ L P
Sbjct: 1718 TFRSEKGLLSATQFTQPA-LTLM-----------EKAAFEDL----KSKGLIPADA---T 1758
Query: 235 MLGH 238
GH
Sbjct: 1759 FAGH 1762
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 1.0
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 16/37 (43%)
Query: 242 RQALDKKFPSLVCGTVES-------DSSSAASVQTNV 271
+QAL KK +++ DS+ A +++ +
Sbjct: 19 KQAL-KK--------LQASLKLYADDSAPALAIKATM 46
>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion
protein, protein, viral protein; HET: NAG; 1.60A
{Influenza a virus} PDB: 3qqb_A* 3qqe_A* 3qqo_A* 3ku6_A*
3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* 3qqi_A*
Length = 327
Score = 29.7 bits (66), Expect = 1.1
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 165 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWT 224
IC+G + + V L T + ++ C + + P + +C W
Sbjct: 5 ICIGYHA-NNSTEKVDTILERNVTVTHAKDILEKTHNGKLCKLNGIPPLELGDCSIAGWL 63
Query: 225 LGPFMCELY 233
LG C+
Sbjct: 64 LGNPECDRL 72
>3ubq_A Hemagglutinin HA1; viral envelope protein, viral fusion protein,
protein-immune system complex; HET: NAG SIA GAL; 2.00A
{Influenza a virus} PDB: 3ubj_A* 3ubn_A* 3ube_A* 3lzg_A*
3ztn_A* 3al4_A* 3lyj_A* 3m6s_A* 4f3z_A* 3gbn_A* 3lzf_A*
3r2x_A* 4eef_A* 1ruy_H* 1rd8_A* 1rvt_H* 1rv0_H* 2wrg_H*
1ruz_H* 3hto_A* ...
Length = 329
Score = 29.3 bits (65), Expect = 1.3
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 165 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWT 224
+C+G + + V L T S L+ + C + +AP + C W
Sbjct: 5 LCIGYHA-NNSTDTVDTVLEKNVTVTHSVNLLEDKHNGKLCKLRGVAPLHLGKCNIAGWI 63
Query: 225 LGPFMCELY 233
LG CE
Sbjct: 64 LGNPECESL 72
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 29.0 bits (65), Expect = 2.1
Identities = 1/36 (2%), Positives = 10/36 (27%)
Query: 169 TMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDF 204
+ + + + + + N+ ++
Sbjct: 270 IGHGNAYSLDIDGYWSSMTAVAGDGVQLNNITVKNW 305
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A
{Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Length = 319
Score = 28.5 bits (63), Expect = 2.5
Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 1/69 (1%)
Query: 165 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWT 224
IC+G S + V T T + L+ C P ++ C E
Sbjct: 3 ICIGYQS-TNSTETVDTLTETNVPVTHAKELLHTSHNGMLCATNLGHPLILDTCTIEGLI 61
Query: 225 LGPFMCELY 233
G C+L
Sbjct: 62 YGNPSCDLL 70
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase;
spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP;
1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB:
1i9y_A*
Length = 347
Score = 28.0 bits (62), Expect = 3.2
Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 10/85 (11%)
Query: 97 SLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAIRYQYPPMHPLW 156
+ F TP I G E+V++ P V + A ++
Sbjct: 45 NWLFPENTPLADIYVVGFQEIVQLTP-----QQVISADPAKRREWESCVKRLLNGKCTSG 99
Query: 157 YQALGLTMICLGTMSMVGNGIVVYI 181
+ L + +VG ++++
Sbjct: 100 PG-----YVQLRSGQLVGTALMIFC 119
>2ibx_A Hemagglutinin, fragment; haemagglutinin, H5N1, viral protein; HET:
NAG; 2.80A {Influenza a virus} SCOP: b.19.1.2
Length = 340
Score = 28.1 bits (62), Expect = 3.3
Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
Query: 165 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWT 224
IC+G + + V + T + ++ C + + P ++ +C W
Sbjct: 19 ICIGYHA-NNSTEQVDTIMEKNVTVTHAQDILEKTHNGKLCDLDGVKPLILRDCSVAGWL 77
Query: 225 LGPFMCELY 233
LG MC+ +
Sbjct: 78 LGNPMCDEF 86
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG;
2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB:
1ib4_A*
Length = 339
Score = 27.8 bits (62), Expect = 3.8
Identities = 7/51 (13%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 169 TMSMVGN-GIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNC 218
T++ + GIVV + + + + + + + T +L
Sbjct: 255 TLTSIAKYGIVVQQNYGDTSSTPTTGVPITDFVLDNVHGSVVSSGTNILIS 305
>2wr1_A Hemagglutinin; glycoprotein, lipoprotein, envelope protein, viral
protein; HET: SIA GAL NAG BMA MAN; 2.10A {Unidentified
influenza virus} PDB: 2wr0_A* 2wr2_A* 2wr3_A* 2wr4_A*
2wr5_A 2wrf_A* 2wr7_A* 2wrb_A* 2wrc_A 2wrd_A 2wre_A*
3gbm_A* 2fk0_A* 3s11_A* 3s13_A* 3s12_A* 3fku_A*
Length = 509
Score = 27.4 bits (60), Expect = 5.4
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 165 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMMFSMAPTMVLNCFYETWT 224
IC+G + + V L T + ++ C + + P + +C W
Sbjct: 18 ICIGYHA-NNSTEKVDTILERNVTVTHAKDILEKTHNGKLCRLSGIPPLELGDCSIAGWL 76
Query: 225 LGPFMCELY 233
LG C+
Sbjct: 77 LGNPECDRL 85
>2bp1_A Aflatoxin B1 aldehyde reductase member 2; oxidoreductase, aldo-keto
reductase family 7, SSA reductase, barrel; HET: FLC NDP;
2.4A {Homo sapiens}
Length = 360
Score = 27.2 bits (61), Expect = 6.0
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 10/51 (19%)
Query: 129 SVFAKANAVYNPIVYAIRYQYPPMHPLWYQALGLT-------MICLGTMSM 172
S+ + A+ V + + PP +AL ++ LGTM M
Sbjct: 1 SMLSAASRVVSRAAVHCALRSPPPE---ARALAMSRPPPPRVASVLGTMEM 48
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.139 0.444
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,267,562
Number of extensions: 246264
Number of successful extensions: 639
Number of sequences better than 10.0: 1
Number of HSP's gapped: 602
Number of HSP's successfully gapped: 56
Length of query: 276
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 184
Effective length of database: 4,133,061
Effective search space: 760483224
Effective search space used: 760483224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.2 bits)