RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3981
         (276 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 66.5 bits (161), Expect = 3e-13
 Identities = 26/88 (29%), Positives = 40/88 (45%)

Query: 148 QYPPMHPLWYQALGLTMICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDFCMM 207
           QY    P  +  L   M  L  +    N + +Y+ +  K LRTP N +++NLA +D  M+
Sbjct: 28  QYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMV 87

Query: 208 FSMAPTMVLNCFYETWTLGPFMCELYGM 235
           F    T +    +  +  GP  C L G 
Sbjct: 88  FGGFTTTLYTSLHGYFVFGPTGCNLEGF 115



 Score = 48.0 bits (113), Expect = 5e-07
 Identities = 28/128 (21%), Positives = 59/128 (46%), Gaps = 14/128 (10%)

Query: 22  DWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSG 81
           + ++ S++I+     + +PLI+I + Y  +V  V     Q +E A               
Sbjct: 197 ETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQ------------ 244

Query: 82  TSAEIKLAKVALMTISLWFLAWTPYLVINFGGIL-EMVEINPLITIWGSVFAKANAVYNP 140
             AE ++ ++ ++ +  + + W PY  + F     +  +  P+     + FAK +AVYNP
Sbjct: 245 -KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNP 303

Query: 141 IVYAIRYQ 148
           ++Y +  +
Sbjct: 304 VIYIMMNK 311


>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
           [TaxId: 5053]}
          Length = 422

 Score = 27.3 bits (60), Expect = 2.1
 Identities = 1/36 (2%), Positives = 10/36 (27%)

Query: 169 TMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSDF 204
                   + +  +  +        + + N+   ++
Sbjct: 270 IGHGNAYSLDIDGYWSSMTAVAGDGVQLNNITVKNW 305


>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
           strains [TaxId: 11320]}
          Length = 321

 Score = 27.0 bits (60), Expect = 2.3
 Identities = 14/76 (18%), Positives = 27/76 (35%), Gaps = 15/76 (19%)

Query: 165 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLA-------FSDFCMMFSMAPTMVLN 217
           IC+G  +   +   V       +     N+ V +             C +  + P ++ +
Sbjct: 3   ICIGYHA-NNSTEQV-------DTIMEKNVTVTHAQDILEKTHNGKLCDLNGVKPLILRD 54

Query: 218 CFYETWTLGPFMCELY 233
           C    W LG  MC+ +
Sbjct: 55  CSVAGWLLGNPMCDEF 70


>d1rvxa_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
           strains [TaxId: 11320]}
          Length = 323

 Score = 26.3 bits (58), Expect = 4.4
 Identities = 14/76 (18%), Positives = 24/76 (31%), Gaps = 15/76 (19%)

Query: 165 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLA-------FSDFCMMFSMAPTMVLN 217
           IC+G  +   +   V       +     N+ V +             C +  +AP  +  
Sbjct: 3   ICIGYHA-NNSTDTV-------DTVLEKNVTVTHSVNLLEDSHNGKLCRLKGIAPLQLGK 54

Query: 218 CFYETWTLGPFMCELY 233
           C    W LG   C+  
Sbjct: 55  CNIAGWLLGNPECDPL 70


>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score = 26.1 bits (57), Expect = 5.2
 Identities = 15/103 (14%), Positives = 34/103 (33%), Gaps = 16/103 (15%)

Query: 19  LTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMN--VATLRS 76
           L+       + I Y   +        +    F V    +  K M ++   +   +   R 
Sbjct: 305 LSSVISDPIHAIVYMIAMIIT----CVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRK 360

Query: 77  GDQSGTSAEIKLAKVALMTISLW------FLAWTPYLVINFGG 113
            ++   + E +L +  +  +++       FLA     +   GG
Sbjct: 361 SEK---AIEHRLKRY-IPPLTVMSSAFVGFLATIANFIGALGG 399


>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain
           {Penicillium minioluteum [TaxId: 28574]}
          Length = 373

 Score = 25.8 bits (56), Expect = 6.2
 Identities = 2/35 (5%), Positives = 8/35 (22%)

Query: 169 TMSMVGNGIVVYIFLCTKNLRTPSNILVVNLAFSD 203
               +   +     L         N+   +   ++
Sbjct: 282 VCEGLCPSLFRITPLQNYKNFVVKNVAFPDGLQTN 316


>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different
           strains [TaxId: 11320]}
          Length = 317

 Score = 25.5 bits (56), Expect = 7.1
 Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 15/75 (20%)

Query: 165 ICLGTMSMVGNGIVVYIFLCTKNLRTPSNILVVNLA-------FSDFCMMFSMAPTMVLN 217
           IC+G  S   +   V       +  T +N+ V +             C      P ++  
Sbjct: 3   ICIGYQS-TNSTETV-------DTLTETNVPVTHAKELLHTSHNGMLCATNLGHPLILDT 54

Query: 218 CFYETWTLGPFMCEL 232
           C  E    G   C+L
Sbjct: 55  CTIEGLIYGNPSCDL 69


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.139    0.444 

Gapped
Lambda     K      H
   0.267   0.0440    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,053,045
Number of extensions: 47347
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 14
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.5 bits)