BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3982
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 100/156 (64%), Gaps = 2/156 (1%)
Query: 5 YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 64
Y EG L C DY+++D RS ++ +F P+++I + Y+ IV +VS HEK+M
Sbjct: 176 YTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAA 235
Query: 65 QAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-INPL 123
AK++N LR Q+G +AE++LAK++++ +S + L+W+PY V+ +E + P
Sbjct: 236 MAKRLNAKELRKA-QAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPY 294
Query: 124 ITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFP 159
+FAKA+A++NP++Y++SHPKFR+A+ + FP
Sbjct: 295 AAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 330
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 120 bits (302), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 59/156 (37%), Positives = 100/156 (64%), Gaps = 2/156 (1%)
Query: 5 YVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMRE 64
Y EG L C DY+++D RS ++ +F P+++I + Y+ IV +VS HEK+M
Sbjct: 177 YTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAA 236
Query: 65 QAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-INPL 123
AK++N LR Q+G +AE++LAK++++ +S + L+W+PY V+ +E + P
Sbjct: 237 MAKRLNAKELRKA-QAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPY 295
Query: 124 ITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFP 159
+FAKA+A++NP++Y++SHPKFR+A+ + FP
Sbjct: 296 AAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 331
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 22/188 (11%)
Query: 3 TRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFV-PLILIIYAYYFIVRAVSVHE 59
+RY+PEG +CG DY T ++ ++ S++I Y F V+F+ PLI+I + Y +V V
Sbjct: 177 SRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAA 235
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGIL-EMV 118
Q +E A + AE ++ ++ ++ + + + W PY + F +
Sbjct: 236 AQQQESA-------------TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS 282
Query: 119 EINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVE-SDSSSAASVQ 177
+ P+ + FAK +AVYNP++Y + + +FR + +L CG D ++ +V
Sbjct: 283 DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT---TLCCGKNPLGDDEASTTVS 339
Query: 178 TNVTDDKA 185
T A
Sbjct: 340 KTETSQVA 347
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 22/188 (11%)
Query: 3 TRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFV-PLILIIYAYYFIVRAVSVHE 59
+RY+PEG +CG DY T ++ ++ S++I Y F V+F+ PLI+I + Y +V V
Sbjct: 176 SRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAA 234
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGIL-EMV 118
Q +E A + AE ++ ++ ++ + + + W PY + F +
Sbjct: 235 AQQQESA-------------TTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS 281
Query: 119 EINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVE-SDSSSAASVQ 177
+ P+ + FAK +AVYNP++Y + + +FR + +L CG D ++ +V
Sbjct: 282 DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT---TLCCGKNPLGDDEASTTVS 338
Query: 178 TNVTDDKA 185
T A
Sbjct: 339 KTETSQVA 346
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 22/188 (11%)
Query: 3 TRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFV-PLILIIYAYYFIVRAVSVHE 59
+RY+PEG +CG DY T ++ ++ S++I Y F V+F+ PLI+I + Y +V V
Sbjct: 177 SRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAA 235
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE 119
Q +E A AE ++ ++ ++ + + + W PY + F
Sbjct: 236 AQQQESATTQK-------------AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS 282
Query: 120 -INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVE-SDSSSAASVQ 177
P+ + FAK +AVYNP++Y + + +FR + +L CG D ++ +V
Sbjct: 283 CFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT---TLCCGKNPLGDDEASTTVS 339
Query: 178 TNVTDDKA 185
T A
Sbjct: 340 KTETSQVA 347
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 22/188 (11%)
Query: 3 TRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFV-PLILIIYAYYFIVRAVSVHE 59
+RY+PEG +CG DY T ++ ++ S++I Y F V+F+ PLI+I + Y +V V
Sbjct: 176 SRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAA 234
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE 119
Q +E A AE ++ ++ ++ + + + W PY + F
Sbjct: 235 AQQQESATTQK-------------AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS 281
Query: 120 -INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVE-SDSSSAASVQ 177
P+ + FAK +AVYNP++Y + + +FR + +L CG D ++ +V
Sbjct: 282 CFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT---TLCCGKNPLGDDEASTTVS 338
Query: 178 TNVTDDKA 185
T A
Sbjct: 339 KTETSQVA 346
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 22/188 (11%)
Query: 3 TRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFV-PLILIIYAYYFIVRAVSVHE 59
+RY+PEG +CG DY T ++ ++ S++I Y F V+F+ PLI+I + Y +V V
Sbjct: 177 SRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAA 235
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE 119
Q +E A AE ++ ++ ++ + + + W PY + F
Sbjct: 236 AQQQESATTQK-------------AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGS 282
Query: 120 -INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVE-SDSSSAASVQ 177
P+ + FAK +AVYNP++Y + + +FR + +L CG D ++ +V
Sbjct: 283 CFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT---TLCCGKNPLGDDEASTTVS 339
Query: 178 TNVTDDKA 185
T A
Sbjct: 340 KTETSQVA 347
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 22/188 (11%)
Query: 3 TRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFV-PLILIIYAYYFIVRAVSVHE 59
+RY+PEG +CG DY T ++ ++ S++I Y F V+F+ PLI+I + Y +V V
Sbjct: 177 SRYIPEGMQCSCGIDYYTPHEETNNESFVI-YMFVVHFIIPLIVIFFCYGQLVFTVKEAA 235
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE 119
Q +E A AE ++ ++ ++ + + + W PY + F
Sbjct: 236 AQQQESATTQK-------------AEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGS 282
Query: 120 -INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVE-SDSSSAASVQ 177
P+ + FAK +AVYNP++Y + + +FR + +L CG D ++ +V
Sbjct: 283 CFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT---TLCCGKNPLGDDEASTTVS 339
Query: 178 TNVTDDKA 185
T A
Sbjct: 340 KTETSQVA 347
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 19 LTKDWHHRSYLIFYGFF-VYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSG 77
L +D +Y++++ FF VPL+L++ Y I A KQM Q A
Sbjct: 167 LFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFAAARRQLKQMESQPLPGERA----- 221
Query: 78 DQSGTSAEIKLAKVALMTISLWFLAWTPYLVIN-FGGILEMVEINPLITIW-GSVFAKAN 135
+S E+ AK A + L+ L W P +IN F PL ++ V A N
Sbjct: 222 -RSTLQKEVHAAKSAAIIAGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLAHTN 280
Query: 136 AVYNPIVYAISHPKFRQALDK 156
+V NP +YA +FRQ K
Sbjct: 281 SVVNPFIYAYRIREFRQTFRK 301
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 9/159 (5%)
Query: 19 LTKDWHHRSYLIFYGFF-VYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSG 77
L +D +Y++++ FF VPL+L++ Y I A KQM Q A
Sbjct: 167 LFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERA----- 221
Query: 78 DQSGTSAEIKLAKVALMTISLWFLAWTPYLVIN-FGGILEMVEINPLITIW-GSVFAKAN 135
+S E+ AK + + L+ L W P +IN F PL ++ V + N
Sbjct: 222 -RSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTN 280
Query: 136 AVYNPIVYAISHPKFRQALDKKFPSLVCGTVESDSSSAA 174
+V NP +YA +FRQ K S V E ++AA
Sbjct: 281 SVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFKAAAA 319
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 14/146 (9%)
Query: 16 TDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLR 75
D++T +R+Y I +++PL+++I+ A+ V+ ++ +EQ +K++ A+ R
Sbjct: 169 CDFVT----NRAYAIASSIISFYIPLLIMIFV------ALRVY-REAKEQIRKIDRASKR 217
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKAN 135
+ E K K + + ++ L W P+ ++N + + + + + AN
Sbjct: 218 KTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYAN 277
Query: 136 AVYNPIVYAISHPKFRQALDK--KFP 159
+ NPI+Y S P FR+A + FP
Sbjct: 278 SAMNPIIYCRS-PDFRKAFKRLLAFP 302
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 19 LTKDWHHRSYLIFYGFF-VYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSG 77
L +D +Y++++ FF VPL+L++ Y I A KQM Q A
Sbjct: 167 LFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERA----- 221
Query: 78 DQSGTSAEIKLAKVALMTISLWFLAWTPYLVIN-FGGILEMVEINPLITIW-GSVFAKAN 135
+S E+ AK + + L+ L W P +IN F PL ++ V + N
Sbjct: 222 -RSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTN 280
Query: 136 AVYNPIVYAISHPKFRQALDK 156
+V NP +YA +FRQ K
Sbjct: 281 SVVNPFIYAYRIREFRQTFRK 301
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 9 GNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKK 68
N T C D+ T +++Y I ++VPL+++++ Y + + +++ + +
Sbjct: 186 ANETCC--DFFT----NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGR 239
Query: 69 MNVATLRSGDQSGTSA------------EIKLAKVALMTISLWFLAWTPYLVINFGGILE 116
+V L +Q G + E K K + + + L W P+ ++N +++
Sbjct: 240 FHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 299
Query: 117 MVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVC 163
I + I + N+ +NP++Y S P FR A F L+C
Sbjct: 300 DNLIRKEVYILLNWIGYVNSGFNPLIYCRS-PDFRIA----FQELLC 341
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 12 TACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNV 71
T C D+ T +++Y I ++VPL+++++ Y + + +++ + + +V
Sbjct: 338 TCC--DFFT----NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHV 391
Query: 72 ATLRSGDQSGTSA------------EIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE 119
L +Q G + E K K + + + L W P+ ++N +++
Sbjct: 392 QNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNL 451
Query: 120 INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVC 163
I + I + N+ +NP++Y S P FR A F L+C
Sbjct: 452 IRKEVYILLNWIGYVNSGFNPLIYCRS-PDFRIA----FQELLC 490
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 73/167 (43%), Gaps = 23/167 (13%)
Query: 9 GNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKK 68
N T C D+ T +++Y I ++VPL+++++ Y + + +++ + +
Sbjct: 163 ANETCC--DFFT----NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGR 216
Query: 69 MNVATLRSGDQSGTSA------------EIKLAKVALMTISLWFLAWTPYLVINFGGILE 116
+V L +Q G + E K K + + + L W P+ ++N +++
Sbjct: 217 FHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQ 276
Query: 117 MVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVC 163
I + I + N+ +NP++Y S P FR A F L+C
Sbjct: 277 DNLIRKEVYILLNWIGYVNSGFNPLIYCRS-PDFRIA----FQELLC 318
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 72/164 (43%), Gaps = 23/164 (14%)
Query: 12 TACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNV 71
T C D+ T +++Y I ++VPL+++++ Y + + +++ + + +V
Sbjct: 190 TCC--DFFT----NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHV 243
Query: 72 ATLRSGDQSGTSA------------EIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE 119
L +Q G + E K K + + + L W P+ ++N +++
Sbjct: 244 QNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNL 303
Query: 120 INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVC 163
I + I + N+ +NP++Y S P FR A F L+C
Sbjct: 304 IRKEVYILLNWIGYVNSGFNPLIYCRS-PDFRIA----FQELLC 342
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 72/146 (49%), Gaps = 16/146 (10%)
Query: 16 TDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLR 75
D++T +R+Y I +++PL+++I+ A+ V+ ++ +EQ +K++ A+ R
Sbjct: 169 CDFVT----NRAYAIASSIISFYIPLLIMIFV------ALRVY-REAKEQIRKIDRASKR 217
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKAN 135
+ E K K + + ++ L W P+ ++N + + + + + AN
Sbjct: 218 K--RVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYAN 275
Query: 136 AVYNPIVYAISHPKFRQALDK--KFP 159
+ NPI+Y S P FR+A + FP
Sbjct: 276 SAMNPIIYCRS-PDFRKAFKRLLAFP 300
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 27/152 (17%)
Query: 12 TACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNV 71
T C D+ T +++Y I ++VPL+++++ Y S ++ + Q +K++
Sbjct: 161 TCC--DFFT----NQAYAIASSIVSFYVPLVIMVFVY-------SRVFQEAKRQLQKIDK 207
Query: 72 ATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVF 131
L+ E K K + + + L W P+ ++N +++ I + I +
Sbjct: 208 FCLK---------EHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWI 258
Query: 132 AKANAVYNPIVYAISHPKFRQALDKKFPSLVC 163
N+ +NP++Y S P FR A F L+C
Sbjct: 259 GYVNSGFNPLIYCRS-PDFRIA----FQELLC 285
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 60 KQMREQAKKMNVATLRSGD----QSGTSAEIKLAKVALMTISLWFLAWTPYLVIN-FGGI 114
Q +AK++ + T R+G +S E+ AK + + L+ L W P +IN F
Sbjct: 362 NQTPNRAKRV-ITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFF 420
Query: 115 LEMVEINPLITIW-GSVFAKANAVYNPIVYAISHPKFRQALDK 156
PL ++ V + N+V NP +YA +FRQ K
Sbjct: 421 CPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRK 463
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 11/110 (10%)
Query: 58 HEKQMRE-QAKKMNVATLRSG--------DQSGTSAEIKLAKVALMTISLWFLAWTPYLV 108
+E +++E QA + T R+ +S E+ AK + + L+ L W P +
Sbjct: 313 NEGKVKEAQAAAEQLKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHI 372
Query: 109 IN-FGGILEMVEINPLITIW-GSVFAKANAVYNPIVYAISHPKFRQALDK 156
IN F PL ++ V + N+V NP +YA +FRQ K
Sbjct: 373 INCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRK 422
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 33.5 bits (75), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 60 KQMREQAKKMNVATLRSGD----QSGTSAEIKLAKVALMTISLWFLAWTPY---LVINFG 112
Q +AK++ + T R+G S +S + L K ++ +S++ W P L+++ G
Sbjct: 388 NQTPNRAKRV-ITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVG 446
Query: 113 GILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQA 153
++ +I + V A N+ NPI+Y +++ + R+A
Sbjct: 447 CKVKTCDI-LFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRA 486
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISL----WFLAWTPYLVINFGGIL 115
Q +AK++ + T R+G +K K AL T+ + + L W P+ ++N ++
Sbjct: 377 NQTPNRAKRV-ITTFRTGTWDAYKFCLKEHK-ALKTLGIIMGTFTLCWLPFFIVNIVHVI 434
Query: 116 EMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVC 163
+ I + I + N+ +NP++Y S P FR A F L+C
Sbjct: 435 QDNLIRKEVYILLNWIGYVNSGFNPLIYCRS-PDFRIA----FQELLC 477
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISL----WFLAWTPYLVINFGGIL 115
Q +AK++ + T R+G +K K AL T+ + + L W P+ ++N ++
Sbjct: 377 NQTPNRAKRV-ITTFRTGTWDAYKFCLKEHK-ALKTLGIIMGTFTLCWLPFFIVNIVHVI 434
Query: 116 EMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVC 163
+ I + I + N+ +NP++Y S P FR A F L+C
Sbjct: 435 QDNLIRKEVYILLNWIGYVNSGFNPLIYCRS-PDFRIA----FQELLC 477
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 33.5 bits (75), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISL----WFLAWTPYLVINFGGIL 115
Q +AK++ + T R+G +K K AL T+ + + L W P+ ++N ++
Sbjct: 376 NQTPNRAKRV-ITTFRTGTWDAYKFCLKEHK-ALKTLGIIMGTFTLCWLPFFIVNIVHVI 433
Query: 116 EMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVC 163
+ I + I + N+ +NP++Y S P FR A F L+C
Sbjct: 434 QDNLIRKEVYILLNWIGYVNSGFNPLIYCRS-PDFRIA----FQELLC 476
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 11/108 (10%)
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISL----WFLAWTPYLVINFGGIL 115
Q +AK++ + T R+G +K K AL T+ + + L W P+ ++N ++
Sbjct: 345 NQTPNRAKRV-ITTFRTGTWDAYKFCLKEHK-ALKTLGIIMGTFTLCWLPFFIVNIVHVI 402
Query: 116 EMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVC 163
+ I + I + N+ +NP++Y S P FR A F L+C
Sbjct: 403 QDNLIRKEVYILLNWIGYVNSGFNPLIYCRS-PDFRIA----FQELLC 445
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 20/104 (19%)
Query: 60 KQMREQAKKMNVATLRSGDQSG---TSAEIKLAKVALMTISLWFLAWTPYLVINFGGILE 116
Q +AK++ + T R+G S E K+ + L + + + W PY V
Sbjct: 356 NQTPNRAKRV-ITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNV-------- 406
Query: 117 MVEIN----PLI--TIW--GSVFAKANAVYNPIVYAISHPKFRQ 152
MV IN P I T+W G N+ NP YA+ + F++
Sbjct: 407 MVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKK 450
>pdb|2A0M|A Chain A, Arginase Superfamily Protein From Trypanosoma Cruzi
Length = 316
Score = 29.6 bits (65), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 70 NVATLRSGDQSGTSAEIKLAKVALMTISLWFLAW-TPYLVINFGGILEMVEINPLITIWG 128
+V +L+S D G S + A + FLA TP +++ ++M E+NPL+ +
Sbjct: 236 DVDSLKSSDMPGVSCPAAVGLSAQEAFDMCFLAGKTPTVMM-----MDMSELNPLVEEYR 290
Query: 129 S 129
S
Sbjct: 291 S 291
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 29.6 bits (65), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 18/101 (17%)
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFL-AWTPYLVINFGGILEMV 118
Q +AK++ + T R+G + K A L I L F+ WTPY + MV
Sbjct: 344 NQTPNRAKRV-ITTFRTGTWDAYLIKEKKAAQTLSAILLAFIITWTPYNI--------MV 394
Query: 119 EINPLI------TIW--GSVFAKANAVYNPIVYAISHPKFR 151
+N T W G N+ NP+ YA+ + FR
Sbjct: 395 LVNTFCDSCIPKTYWNLGYWLCYINSTVNPVCYALCNKTFR 435
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 15/120 (12%)
Query: 60 KQMREQAKKMNVATLRSG--DQSGTSA--EIKLAKVALMTISLWFLAWTPYLV---INFG 112
Q +AK++ + T R+G D G+ + K K ++ I +F W PY + I+
Sbjct: 380 NQTPNRAKRV-ITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSF 438
Query: 113 GILEMV----EINPLITIWGSV---FAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGT 165
+LE++ E + W S+ A + NPI+YA KF+ + S+ G+
Sbjct: 439 ILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSVSRGS 498
>pdb|1CFV|L Chain L, Monoclonal Antibody Fragment Fv4155 From E. Coli
pdb|2BFV|L Chain L, Monoclonal Antibody Fragment Fv4155 From E. Coli
pdb|1BFV|L Chain L, Monoclonal Antibody Fragment Fv4155 From E. Coli
Length = 113
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFG 112
SG SGT +K+++VA + L+F + + ++ + FG
Sbjct: 68 SGSGSGTDFTLKISRVAAEDLGLYFCSQSSHVPLTFG 104
>pdb|1EDV|A Chain A, Solution Structure Of 2nd Intradiskal Loop Of Bovine
Rhodopsin (Residues 172-205)
Length = 34
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 3 TRYVPEGNLTACGTDYLT--KDWHHRSYLI 30
+RY+PEG +CG DY T ++ ++ S++I
Sbjct: 5 SRYIPEGMQCSCGIDYYTPHEETNNESFVI 34
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 49/109 (44%), Gaps = 8/109 (7%)
Query: 60 KQMREQAKKMNVATLRSG--DQSGTS-AEIKLAKVALMTISLWFLAWTPYLVIN-FGGIL 115
Q +AK++ + T R+G D G E K ++ + + + + W P+ + +
Sbjct: 369 NQTPNRAKRV-ITTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHC 427
Query: 116 EMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCG 164
+ ++P + + N+ NP++Y + +FR+A K L CG
Sbjct: 428 QTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLK---ILSCG 473
>pdb|1FDF|A Chain A, Helix 7 Bovine Rhodopsin
Length = 25
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 129 SVFAKANAVYNPIVYAISHPKFRQ 152
+ FAK +AVYNP++Y + + +FR
Sbjct: 2 AFFAKTSAVYNPVIYIMMNKQFRN 25
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 12/103 (11%)
Query: 61 QMREQAKKMNVATLRSGDQSG---TSAEIKLAKVALMTISLWFLAWTPY----LVINFGG 113
Q +AK++ + T R+G + E K AK ++ + L W PY +VI F
Sbjct: 342 QTPNRAKRV-ITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCK 400
Query: 114 ILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDK 156
++ + TIW N+ NP++Y + + F++ +
Sbjct: 401 NCCNEHLH-MFTIW---LGYINSTLNPLIYPLCNENFKKTFKR 439
>pdb|2KOE|A Chain A, Human Cannabinoid Receptor 1 - Helix 78 PEPTIDE
Length = 40
Score = 28.5 bits (62), Expect = 2.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 127 WGSVFAKANAVYNPIVYAISHPKFRQALDKKFPS 160
+ S+ N+ NPI+YA+ R A FPS
Sbjct: 5 FASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPS 38
>pdb|1RMF|L Chain L, Structures Of A Monoclonal Anti-Icam-1 Antibody R6.5
Fragment At 2.8 Angstroms Resolution
Length = 219
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEM----VEINPLITIW 127
SG SGT +K+++V + ++F + + ++ + FGG ++ + P ++I+
Sbjct: 68 SGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPLTFGGGTKLEIKRADAAPTVSIF 123
>pdb|1IGI|L Chain L, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|A Chain A, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
pdb|1IGJ|C Chain C, 26-10 Fab:digoxin Complex-Affinity And Specificity Due To
Surface Complementarity
Length = 219
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEM----VEINPLITIW 127
SG SGT +K+++V + ++F + T ++ FGG ++ + P ++I+
Sbjct: 68 SGSGSGTDFTLKISRVEAEDLGIYFCSQTTHVPPTFGGGTKLEIKRADAAPTVSIF 123
>pdb|1MAJ|A Chain A, Solution Structure Of An Isolated Antibody Vl Domain
pdb|1MAK|A Chain A, Solution Structure Of An Isolated Antibody Vl Domain
Length = 113
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGG 113
SG SGT +K+++V + ++F + T ++ FGG
Sbjct: 68 SGSGSGTDFTLKISRVEAEDLGIYFCSQTTHVPPTFGG 105
>pdb|1GDE|A Chain A, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GDE|B Chain B, Crystal Structure Of Pyrococcus Protein A-1 E-form
pdb|1GD9|A Chain A, Crystall Structure Of Pyrococcus Protein-A1
pdb|1GD9|B Chain B, Crystall Structure Of Pyrococcus Protein-A1
Length = 389
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 128 GSVFAKANAVYNPIVYAISHPKFRQALDK 156
GS F KA Y I YA ++ K +A+D+
Sbjct: 350 GSAFGKAGEGYVRISYATAYEKLEEAMDR 378
>pdb|1DBA|L Chain L, Three-Dimensional Structure Of An Anti-Steroid Fab' And
Progesterone-Fab' Complex
pdb|1DBB|L Chain L, Three-Dimensional Structure Of An Anti-Steroid Fab' And
Progesterone-Fab' Complex
pdb|1DBJ|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|1DBK|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|1DBM|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
pdb|2DBL|L Chain L, Molecular Basis Of Cross-Reactivity And The Limits Of
Antibody-Antigen Complementarity
Length = 216
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGG 113
SG SGT +K+++V + ++F + + ++ FGG
Sbjct: 68 SGSGSGTDFTLKISRVEAEDLGIYFCSQSSHVPPTFGG 105
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
9(Z),11(E)-Octadecadienoic Acid
pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
Methoxy-Phenol
pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
(Egc)
pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
4-nitrocatechol At 2.15 Angstrom Resolution
pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
2.0 A Resolution
pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
Length = 857
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE--INPLITIWGSVFAK 133
GDQSG +++ L + S+W LA Y+V+N ++V +N + + A
Sbjct: 475 QGDQSGAFSQVFLPADEGVESSIWLLA-KAYVVVNDSCYHQLVSHWLNTHAVVEPFIIAT 533
Query: 134 AN--AVYNPIVYAISHPKFRQALD 155
+V +PI Y + HP +R ++
Sbjct: 534 NRHLSVVHPI-YKLLHPHYRDTMN 556
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
Length = 857
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE--INPLITIWGSVFAK 133
GDQSG +++ L + S+W LA Y+V+N ++V +N + + A
Sbjct: 475 QGDQSGAFSQVFLPADEGVESSIWLLA-KAYVVVNDSCYHQLVSHXLNTHAVVEPFIIAT 533
Query: 134 AN--AVYNPIVYAISHPKFRQALD 155
+V +PI Y + HP +R ++
Sbjct: 534 NRHLSVVHPI-YKLLHPHYRDTMN 556
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/139 (19%), Positives = 54/139 (38%), Gaps = 17/139 (12%)
Query: 21 KDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQS 80
+D+ + I F + VP+++I Y ++R ++ L SG +
Sbjct: 282 QDYWGPVFAICIFLFSFIVPVLVISVCYSLMIR--------------RLRGVRLLSGSRE 327
Query: 81 GTSAEIKLAKVALMTISLWFLAWTPYLVINFG---GILEMVEINPLITIWGSVFAKANAV 137
++ ++ L+ ++++ WTP V G+ E I + + N+
Sbjct: 328 KDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSC 387
Query: 138 YNPIVYAISHPKFRQALDK 156
NPI+YA F+ K
Sbjct: 388 LNPILYAFLDENFKACFRK 406
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 63/147 (42%), Gaps = 30/147 (20%)
Query: 24 HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS 83
+ + Y I +YF+PL++I YAY V +++ ++ + R +Q S
Sbjct: 192 YEKVYHICVTVLIYFLPLLVIGYAY--TVVGITLWASEIPGDSSD------RYHEQ--VS 241
Query: 84 AEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINP------------LITIWGSVF 131
A+ K+ K+ ++ + + + W P F + INP L +W
Sbjct: 242 AKRKVVKMMIVVVCTFAICWLP-----FHIFFLLPYINPDLYLKKFIQQVYLAIMW---L 293
Query: 132 AKANAVYNPIVYAISHPKFRQALDKKF 158
A ++ +YNPI+Y + +FR F
Sbjct: 294 AMSSTMYNPIIYCCLNDRFRLGFKHAF 320
>pdb|1A3L|L Chain L, Catalysis Of A Disfavored Reaction: An Antibody Exo Diels-
Alderase-Tsa-Inhibitor Complex At 1.95 A Resolution
pdb|1RUQ|L Chain L, Crystal Structure (H) Of U.V.-Irradiated Diels-Alder
Antibody 13g5 Fab At Ph 8.0 With A Data Set Collected In
House.
pdb|1RUR|L Chain L, Crystal Structure (i) Of Native Diels-alder Antibody 13g5
Fab At Ph 8.0 With A Data Set Collected At Ssrl Beamline
9- 1
Length = 217
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 44 IIYAYYFIVRAVSVHEKQMREQAKKMNVATLR-SGDQSGTSAEIKLAKVALMTISLWFLA 102
II+ Y+++ + + + + +K + A R SG SGT +++++V + +++ A
Sbjct: 35 IIHMYWYLQKPGQSPQLLIYQMSKLASGAPDRFSGSGSGTDFTLRISRVEAEDVGVYYCA 94
Query: 103 WTPYLVINFGGILEM----VEINPLITIW 127
L FGG ++ + P ++I+
Sbjct: 95 QNLELPYTFGGGTKLEIKRADAAPTVSIF 123
>pdb|3QG6|A Chain A, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
pdb|3QG6|L Chain L, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
Length = 218
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEM----VEINPLITIW 127
SG SGT +K+++V + +++ + T ++ FGG ++ + P ++I+
Sbjct: 68 SGSGSGTDFTLKISRVESEDLGIYYCSQTTHVPYTFGGGTKLEIKRADAAPTVSIF 123
>pdb|3QG7|L Chain L, Structural Basis For Ligand Recognition And Discrimination
Of A Quorum Quenching Antibody
Length = 216
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEM----VEINPLITIW 127
SG SGT +K+++V + +++ + T ++ FGG ++ + P ++I+
Sbjct: 68 SGSGSGTDFTLKISRVESEDLGIYYCSQTTHVPYTFGGGTKLEIKRADAAPTVSIF 123
>pdb|1QFU|L Chain L, Influenza Virus Hemagglutinin Complexed With A
Neutralizing Antibody
Length = 217
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 76 SGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEM----VEINPLITIW 127
SG SGT +K+++V + ++F + ++ FGG ++ + P ++I+
Sbjct: 68 SGSGSGTDFTLKISRVEAEDLGVYFCSQNTHVPYTFGGGTKLEIKRADAAPTVSIF 123
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,142,204
Number of Sequences: 62578
Number of extensions: 184070
Number of successful extensions: 623
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 560
Number of HSP's gapped (non-prelim): 54
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)