Query psy3982
Match_columns 185
No_of_seqs 118 out of 1506
Neff 10.2
Searched_HMMs 29240
Date Fri Aug 16 22:15:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3982.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3982hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 99.9 6.3E-27 2.2E-31 188.4 9.0 84 80-163 399-490 (510)
2 2rh1_A Beta-2-adrenergic recep 99.9 7.9E-24 2.7E-28 169.9 14.4 77 83-160 401-477 (500)
3 3vw7_A Proteinase-activated re 99.9 2.3E-24 8E-29 171.6 10.2 81 81-161 381-466 (484)
4 3uon_A Human M2 muscarinic ace 99.9 2.5E-23 8.7E-28 164.8 12.9 80 82-161 380-459 (467)
5 1u19_A Rhodopsin; G protein-co 99.9 3.4E-24 1.1E-28 163.9 7.2 145 3-160 177-324 (349)
6 2z73_A Rhodopsin; visual pigme 99.9 1.6E-23 5.4E-28 165.8 10.5 157 3-160 175-332 (448)
7 3v2y_A Sphingosine 1-phosphate 99.9 1.1E-22 3.8E-27 164.0 15.4 81 82-162 413-495 (520)
8 3rze_A Histamine H1 receptor, 99.9 1.8E-23 6.2E-28 165.1 10.6 82 81-162 364-445 (452)
9 2ks9_A Substance-P receptor; w 99.9 5.3E-23 1.8E-27 158.4 12.7 150 3-162 169-324 (364)
10 3odu_A C-X-C chemokine recepto 99.9 4.5E-24 1.5E-28 170.7 6.2 82 81-162 404-495 (502)
11 3eml_A Human adenosine A2A rec 99.9 2.4E-23 8.3E-28 165.7 9.9 84 82-165 387-472 (488)
12 4dkl_A MU-type opioid receptor 99.9 6.1E-23 2.1E-27 162.4 11.5 80 79-158 372-454 (464)
13 3sn6_R Lysozyme, beta-2 adrene 99.9 1.9E-22 6.6E-27 162.3 13.8 149 11-160 330-491 (514)
14 4amj_A Beta-1 adrenergic recep 99.9 8.1E-23 2.8E-27 153.9 8.6 145 8-160 156-301 (315)
15 4eiy_A Adenosine receptor A2A/ 99.9 5.2E-23 1.8E-27 162.2 7.3 86 82-167 346-433 (447)
16 3pbl_A D(3) dopamine receptor, 99.9 5.8E-22 2E-26 157.6 11.8 79 82-160 393-472 (481)
17 4ea3_A Fusion protein of nocic 99.9 2E-22 7E-27 159.0 7.5 142 5-160 265-410 (434)
18 2lnl_A C-X-C chemokine recepto 99.8 4E-21 1.4E-25 144.3 10.0 134 5-160 150-294 (296)
19 2koe_A Human cannabinoid recep 99.1 1.3E-10 4.6E-15 60.6 3.6 36 124-159 2-37 (40)
20 2ki9_A Cannabinoid receptor 2; 98.4 8.8E-09 3E-13 51.1 -1.8 29 86-114 2-30 (33)
21 4ea3_A Fusion protein of nocic 87.0 3.7 0.00013 31.6 8.5 91 78-168 322-414 (434)
22 3sn6_R Lysozyme, beta-2 adrene 85.7 4.6 0.00016 31.9 8.6 79 87-167 416-494 (514)
23 2z73_A Rhodopsin; visual pigme 84.2 4.8 0.00017 31.0 8.0 34 130-163 298-331 (448)
24 1u19_A Rhodopsin; G protein-co 72.7 12 0.0004 27.4 6.7 35 131-165 291-325 (349)
25 4amj_A Beta-1 adrenergic recep 70.0 6.1 0.00021 28.4 4.5 80 86-167 225-304 (315)
26 2ket_A Cathelicidin-6; antimic 69.3 1.3 4.6E-05 19.1 0.4 13 148-160 4-16 (27)
27 2ks9_A Substance-P receptor; w 59.3 50 0.0017 24.2 8.3 32 135-166 293-324 (364)
28 2rdd_B UPF0092 membrane protei 54.1 18 0.00061 17.5 3.2 19 39-57 7-26 (37)
29 3arc_M Photosystem II reaction 53.4 18 0.00063 17.4 3.7 22 29-50 7-28 (36)
30 3noh_A Putative peptide bindin 26.8 31 0.0011 21.8 1.6 22 137-158 26-47 (139)
31 3odu_A C-X-C chemokine recepto 24.5 2.4E+02 0.0081 21.5 9.6 22 35-56 53-74 (502)
32 2jx4_A Vasopressin V2 receptor 20.6 31 0.0011 18.0 0.7 14 48-61 2-15 (52)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.94 E-value=6.3e-27 Score=188.43 Aligned_cols=84 Identities=21% Similarity=0.266 Sum_probs=63.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc--------chHHHHHHHHHHHhhhhhccchhheecchHHH
Q psy3982 80 SGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE--------INPLITIWGSVFAKANAVYNPIVYAISHPKFR 151 (185)
Q Consensus 80 ~~~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr 151 (185)
...++++|++||+++++++|++||+||+++.++..+.... ...++..++.||+++||++||+||+++|++||
T Consensus 399 ~~~~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR 478 (510)
T 4grv_A 399 GSVQALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFR 478 (510)
T ss_dssp STTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 3456788999999999999999999999999987765432 23456778899999999999999999999999
Q ss_pred HHHHhhcccccc
Q psy3982 152 QALDKKFPSLVC 163 (185)
Q Consensus 152 ~~~~~~~~~~~~ 163 (185)
++++++++|+|+
T Consensus 479 ~aFk~iL~C~C~ 490 (510)
T 4grv_A 479 QVFLSTLACLCP 490 (510)
T ss_dssp CC----------
T ss_pred HHHHHHHhhcCC
Confidence 999999976543
No 2
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.91 E-value=7.9e-24 Score=169.90 Aligned_cols=77 Identities=22% Similarity=0.381 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccchHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhccc
Q psy3982 83 SAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPS 160 (185)
Q Consensus 83 ~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~ 160 (185)
++|+|++|++++++++|++||+|++++.++..+.....+..+..++.||+++||++||+||++ +++||+++++++++
T Consensus 401 ~~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~il~~ 477 (500)
T 2rh1_A 401 LKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCL 477 (500)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHHHHhh
Confidence 478999999999999999999999999998887655566788889999999999999999996 99999999999954
No 3
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.91 E-value=2.3e-24 Score=171.61 Aligned_cols=81 Identities=6% Similarity=0.116 Sum_probs=60.1
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc-----chHHHHHHHHHHHhhhhhccchhheecchHHHHHHH
Q psy3982 81 GTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-----INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALD 155 (185)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~ 155 (185)
+.++++|++||+++++++|++||+|+.++.++..+.... ....+..++.+|+++|+++||+||++++++||++++
T Consensus 381 ~~~~~~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~~ 460 (484)
T 3vw7_A 381 NRSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHTSTTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYVY 460 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTCTTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC-----
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHHH
Confidence 445678999999999999999999999999987644221 345677789999999999999999999999999999
Q ss_pred hhcccc
Q psy3982 156 KKFPSL 161 (185)
Q Consensus 156 ~~~~~~ 161 (185)
++++|.
T Consensus 461 ~ll~~~ 466 (484)
T 3vw7_A 461 SILCCK 466 (484)
T ss_dssp ------
T ss_pred HHHhhc
Confidence 988543
No 4
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.90 E-value=2.5e-23 Score=164.84 Aligned_cols=80 Identities=20% Similarity=0.345 Sum_probs=71.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccchHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhcccc
Q psy3982 82 TSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSL 161 (185)
Q Consensus 82 ~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~~ 161 (185)
.++++|+++++++++++|++||+|+.+..++..+........+..+..+++++|+++||+||++++++||++++++++|.
T Consensus 380 ~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c~ 459 (467)
T 3uon_A 380 PSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLMCH 459 (467)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTSCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHHHHCC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHHHHHhhh
Confidence 34678999999999999999999999999998887766678888999999999999999999999999999999999543
No 5
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.90 E-value=3.4e-24 Score=163.92 Aligned_cols=145 Identities=26% Similarity=0.571 Sum_probs=113.9
Q ss_pred ccccccCCccccccccccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCC
Q psy3982 3 TRYVPEGNLTACGTDYLTK--DWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQS 80 (185)
Q Consensus 3 ~~~~~~~~~~~C~~~~~~~--~~~~~~y~~~~~~~~~~~p~~i~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
+.+.++.....|..++..+ ......|.....++.+++|+++++++|.+|++.+++++++.+ ....
T Consensus 177 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~-------------~~~~ 243 (349)
T 1u19_A 177 SRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ-------------ESAT 243 (349)
T ss_dssp SCCEEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC-------------SSSH
T ss_pred eeeeccCCceeecccccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-------------cchh
Confidence 4455566677898777543 234567778888888999999999999999999986543221 1222
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcc-cchHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhcc
Q psy3982 81 GTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMV-EINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFP 159 (185)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~ 159 (185)
..++++|++++++.++++|++||+|+.+..++...... .....+..+..++.++|+++||+||++.+++||++++++++
T Consensus 244 ~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~ 323 (349)
T 1u19_A 244 TQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLC 323 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhheecCCcccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhc
Confidence 34667899999999999999999999998887665443 24456777888999999999999999999999999999885
Q ss_pred c
Q psy3982 160 S 160 (185)
Q Consensus 160 ~ 160 (185)
|
T Consensus 324 c 324 (349)
T 1u19_A 324 C 324 (349)
T ss_dssp S
T ss_pred c
Confidence 4
No 6
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=99.90 E-value=1.6e-23 Score=165.78 Aligned_cols=157 Identities=38% Similarity=0.726 Sum_probs=119.6
Q ss_pred ccccccCCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCc
Q psy3982 3 TRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGT 82 (185)
Q Consensus 3 ~~~~~~~~~~~C~~~~~~~~~~~~~y~~~~~~~~~~~p~~i~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (185)
+.+..+.....|..++..++.....|....+++.+++|+++++++|.+|++.++++.++.+...........+ ......
T Consensus 175 ~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~ 253 (448)
T 2z73_A 175 GAYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELR-KAQAGA 253 (448)
T ss_dssp SCEEECTTSSSEEECCSCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTCCTTHH-HHHHHH
T ss_pred eeeeecCCceeEecccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-hhhccc
Confidence 3445555667788777665544566777778888999999999999999999999888776543322111000 001123
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc-chHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhccc
Q psy3982 83 SAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPS 160 (185)
Q Consensus 83 ~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~ 160 (185)
++++|+++++++++++|++||+|+.+..++..+.... ....+..+..++.++|+++||+||++++++||+++++++++
T Consensus 254 ~~~~k~~~~l~~iv~~F~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~~ 332 (448)
T 2z73_A 254 NAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPW 332 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCGG
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCcccCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHH
Confidence 4578999999999999999999999999887765432 34566778889999999999999999999999999999864
No 7
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.90 E-value=1.1e-22 Score=164.03 Aligned_cols=81 Identities=20% Similarity=0.349 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc--chHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhcc
Q psy3982 82 TSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE--INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFP 159 (185)
Q Consensus 82 ~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~ 159 (185)
.++++|+++++++++++|++||+|+++..++..+.... .......++.+++++||++||+||++++++||++++++++
T Consensus 413 ~~~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~ 492 (520)
T 3v2y_A 413 SSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMG 492 (520)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTCSTTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHTTCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 34689999999999999999999999999987765432 2344456678899999999999999999999999999997
Q ss_pred ccc
Q psy3982 160 SLV 162 (185)
Q Consensus 160 ~~~ 162 (185)
+..
T Consensus 493 ~~~ 495 (520)
T 3v2y_A 493 RPL 495 (520)
T ss_dssp SCC
T ss_pred Hhc
Confidence 543
No 8
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=165.06 Aligned_cols=82 Identities=17% Similarity=0.320 Sum_probs=72.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccchHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhccc
Q psy3982 81 GTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPS 160 (185)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~ 160 (185)
..++++|+++++++++++|++||+|+.+..++..+........+..++.+++++|+++||+||++++++||+++++++++
T Consensus 364 ~~~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~~ 443 (452)
T 3rze_A 364 HMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHI 443 (452)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHHHHHHh
Confidence 45578999999999999999999999999999888766656667778999999999999999999999999999999965
Q ss_pred cc
Q psy3982 161 LV 162 (185)
Q Consensus 161 ~~ 162 (185)
.+
T Consensus 444 ~~ 445 (452)
T 3rze_A 444 RS 445 (452)
T ss_dssp --
T ss_pred cc
Confidence 43
No 9
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.89 E-value=5.3e-23 Score=158.41 Aligned_cols=150 Identities=18% Similarity=0.307 Sum_probs=115.0
Q ss_pred ccccccCCcccccccccccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCC
Q psy3982 3 TRYVPEGNLTACGTDYLTKD--WHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQS 80 (185)
Q Consensus 3 ~~~~~~~~~~~C~~~~~~~~--~~~~~y~~~~~~~~~~~p~~i~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
+.+.++++...|..+|+.+. .....|.....++.+++|+++++++|.+|.+.+++++.+.. ..+...+
T Consensus 169 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~----------~~~~~~~ 238 (364)
T 2ks9_A 169 STTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGD----------SSDRYHE 238 (364)
T ss_dssp SCCCBCTTCSSBCCCCSCCCTTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSS----------SSSCSSH
T ss_pred hhheecCCCCEEeecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC----------cchhhhh
Confidence 34455566778988876642 23457888888888999999999999999998875432211 0111223
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc----chHHHHHHHHHHHhhhhhccchhheecchHHHHHHHh
Q psy3982 81 GTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE----INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDK 156 (185)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~ 156 (185)
+.++++|+++++++++++|++||+|+.+..++....... ....+..+..+++++|+++||+||++.+++||+++++
T Consensus 239 ~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~ 318 (364)
T 2ks9_A 239 QVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKH 318 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 346678999999999999999999999998887665432 3455677888999999999999999999999999999
Q ss_pred hccccc
Q psy3982 157 KFPSLV 162 (185)
Q Consensus 157 ~~~~~~ 162 (185)
++++..
T Consensus 319 ~~~~~~ 324 (364)
T 2ks9_A 319 AFRCCP 324 (364)
T ss_dssp HHSSSC
T ss_pred HHhhcC
Confidence 987543
No 10
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.89 E-value=4.5e-24 Score=170.69 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=69.6
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcc----------cchHHHHHHHHHHHhhhhhccchhheecchHH
Q psy3982 81 GTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMV----------EINPLITIWGSVFAKANAVYNPIVYAISHPKF 150 (185)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~f 150 (185)
+.++++|+++++++++++|++||+|+.++.++..+... .....+..++.+|+++|+++||+||++++++|
T Consensus 404 ~~~~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~f 483 (502)
T 3odu_A 404 KGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKF 483 (502)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCC
T ss_pred hhHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHH
Confidence 45568999999999999999999999998888765311 14456667899999999999999999999999
Q ss_pred HHHHHhhccccc
Q psy3982 151 RQALDKKFPSLV 162 (185)
Q Consensus 151 r~~~~~~~~~~~ 162 (185)
|+++++++++..
T Consensus 484 R~~~~~ll~~~~ 495 (502)
T 3odu_A 484 KTSAQHALTSGR 495 (502)
T ss_dssp CCCHHHHHSSCS
T ss_pred HHHHHHHhccCC
Confidence 999999996543
No 11
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.89 E-value=2.4e-23 Score=165.69 Aligned_cols=84 Identities=26% Similarity=0.363 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcc--cchHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhcc
Q psy3982 82 TSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMV--EINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFP 159 (185)
Q Consensus 82 ~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~ 159 (185)
.++++|+++++++++++|++||+|+.++.++..+... .....+..++.+++++|+++||+||++++++||++++++++
T Consensus 387 ~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~l~~ 466 (488)
T 3eml_A 387 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIR 466 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCccccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHHHHHHh
Confidence 3578999999999999999999999999998877654 35677888999999999999999999999999999999997
Q ss_pred cccccc
Q psy3982 160 SLVCGT 165 (185)
Q Consensus 160 ~~~~~~ 165 (185)
+.+++.
T Consensus 467 ~~~~~~ 472 (488)
T 3eml_A 467 SHVLRQ 472 (488)
T ss_dssp HTTSCC
T ss_pred hccccc
Confidence 654444
No 12
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.89 E-value=6.1e-23 Score=162.41 Aligned_cols=80 Identities=14% Similarity=0.331 Sum_probs=69.4
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc---chHHHHHHHHHHHhhhhhccchhheecchHHHHHHH
Q psy3982 79 QSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE---INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALD 155 (185)
Q Consensus 79 ~~~~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~ 155 (185)
..+.++++|+++++++++++|++||+|+.+..++..+.... ....+..++.+|+++|+++||+||++++++||++++
T Consensus 372 ~~~~~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~ 451 (464)
T 4dkl_A 372 YEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFR 451 (464)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHH
Confidence 34567789999999999999999999999999988765432 455667788899999999999999999999999999
Q ss_pred hhc
Q psy3982 156 KKF 158 (185)
Q Consensus 156 ~~~ 158 (185)
+++
T Consensus 452 ~lc 454 (464)
T 4dkl_A 452 EFC 454 (464)
T ss_dssp HHH
T ss_pred HHh
Confidence 974
No 13
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.89 E-value=1.9e-22 Score=162.29 Aligned_cols=149 Identities=17% Similarity=0.341 Sum_probs=111.2
Q ss_pred cccccccccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------------ccccCC
Q psy3982 11 LTACGTDYLT-KDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNV------------ATLRSG 77 (185)
Q Consensus 11 ~~~C~~~~~~-~~~~~~~y~~~~~~~~~~~p~~i~~~~y~~i~~~l~~~~~~~~~~~~~~~~------------~~~~~~ 77 (185)
...|...... +......|.+..+++.+++|+++++++|.+|++.++++.++.+........ ......
T Consensus 330 ~~~c~~~~~~~~~~~~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (514)
T 3sn6_R 330 AINCYAEETCCDFFTNQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRR 409 (514)
T ss_dssp HHHHHHSSSCCCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------------
T ss_pred ccceeecccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccc
Confidence 3445443322 223456788888999999999999999999999999887776543221100 000111
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccchHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhh
Q psy3982 78 DQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKK 157 (185)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~ 157 (185)
..+..++++|+++++++++++|++||+|+.+..++...........+..+..++.++|+++||+||+ ++++||++++++
T Consensus 410 ~~~~~~~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~ 488 (514)
T 3sn6_R 410 SSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQEL 488 (514)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHH
Confidence 2334457899999999999999999999999999887766556677888899999999999999999 899999999999
Q ss_pred ccc
Q psy3982 158 FPS 160 (185)
Q Consensus 158 ~~~ 160 (185)
+++
T Consensus 489 l~~ 491 (514)
T 3sn6_R 489 LCL 491 (514)
T ss_dssp CC-
T ss_pred hCc
Confidence 854
No 14
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.88 E-value=8.1e-23 Score=153.94 Aligned_cols=145 Identities=19% Similarity=0.353 Sum_probs=109.0
Q ss_pred cCCccccccccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCchHHH
Q psy3982 8 EGNLTACGTDYLTK-DWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAEI 86 (185)
Q Consensus 8 ~~~~~~C~~~~~~~-~~~~~~y~~~~~~~~~~~p~~i~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (185)
+++...|..++... ......|.....++.+++|+++++++|.+|++.++++.++.+...... .++...++++
T Consensus 156 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 228 (315)
T 4amj_A 156 DPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRK-------TSRVMLMREH 228 (315)
T ss_dssp SHHHHHHHHCTTCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC-------------------CHHHHHHHH
T ss_pred CCCccccccccccchhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccc-------cchhhhhhhh
Confidence 33445676555432 234667888888888999999999999999999998766554322110 1122334688
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccchHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhccc
Q psy3982 87 KLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPS 160 (185)
Q Consensus 87 ~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~ 160 (185)
|+++++++++++|++||+|+.+..++...........+..+..++.++|+++||+||+ .+++||+++++++++
T Consensus 229 k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~ 301 (315)
T 4amj_A 229 KALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAF 301 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCC
Confidence 9999999999999999999999999888776656677788889999999999999999 999999999999854
No 15
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.88 E-value=5.2e-23 Score=162.24 Aligned_cols=86 Identities=27% Similarity=0.363 Sum_probs=72.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcc--cchHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhcc
Q psy3982 82 TSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMV--EINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFP 159 (185)
Q Consensus 82 ~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~ 159 (185)
.++++|+++++++++++|++||+|+.+..++...... .....+..++.+++++|+++||+||++++++||++++++++
T Consensus 346 ~~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~ 425 (447)
T 4eiy_A 346 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIR 425 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcccccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHHHHHHH
Confidence 3568899999999999999999999999988777543 25667888999999999999999999999999999999997
Q ss_pred cccccccC
Q psy3982 160 SLVCGTVE 167 (185)
Q Consensus 160 ~~~~~~~~ 167 (185)
+.+++...
T Consensus 426 ~~~~r~~~ 433 (447)
T 4eiy_A 426 SHVLRQQE 433 (447)
T ss_dssp HTC-----
T ss_pred HHHhccCC
Confidence 65554433
No 16
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.87 E-value=5.8e-22 Score=157.64 Aligned_cols=79 Identities=16% Similarity=0.348 Sum_probs=70.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcc-cchHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhccc
Q psy3982 82 TSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMV-EINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPS 160 (185)
Q Consensus 82 ~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~ 160 (185)
.++++|+++++++++++|++||+|+.+..++...... .....+..+..+|+++|+++||+||++++++||++++++++|
T Consensus 393 ~~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ll~c 472 (481)
T 3pbl_A 393 PLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC 472 (481)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCC
T ss_pred cchhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHHHHhc
Confidence 3468999999999999999999999999998876554 356778888999999999999999999999999999999953
No 17
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.86 E-value=2e-22 Score=158.99 Aligned_cols=142 Identities=18% Similarity=0.306 Sum_probs=106.9
Q ss_pred ccccCCcccccccccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCch
Q psy3982 5 YVPEGNLTACGTDYLTKD-WHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS 83 (185)
Q Consensus 5 ~~~~~~~~~C~~~~~~~~-~~~~~y~~~~~~~~~~~p~~i~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (185)
+..+.+...|...++..+ .....|.+..+++.+++|+++++++|.+|++.+++++++.. ..++.+
T Consensus 265 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~--------------~~~~~~ 330 (434)
T 4ea3_A 265 AQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSG--------------SREKDR 330 (434)
T ss_dssp ECCCSSCCCEEECCCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCSSCSS--------------CHHHHH
T ss_pred eEeecCceeEEEecCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--------------chhhHH
Confidence 344455677877765543 23456778888889999999999999999999886433211 122345
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc---chHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhccc
Q psy3982 84 AEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE---INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPS 160 (185)
Q Consensus 84 ~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~ 160 (185)
+++|+.+++++++++|++||+|+.+..++..+.... ....+..++.++.++|+++||+||++++++||+++++++++
T Consensus 331 ~~~~~~~~~~~vv~~F~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~~~~~fR~~~~~~~~~ 410 (434)
T 4ea3_A 331 NLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCA 410 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC-----
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 678999999999999999999999998887665432 33456667788999999999999999999999999998754
No 18
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.85 E-value=4e-21 Score=144.25 Aligned_cols=134 Identities=19% Similarity=0.333 Sum_probs=103.8
Q ss_pred ccccCCccccccccccc-ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCch
Q psy3982 5 YVPEGNLTACGTDYLTK-DWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS 83 (185)
Q Consensus 5 ~~~~~~~~~C~~~~~~~-~~~~~~y~~~~~~~~~~~p~~i~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (185)
+.++.....|...+... ......|....+.+.+++|+.++.++|.++.+.+++ ...+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~----------------------~~~~ 207 (296)
T 2lnl_A 150 YHPNNSSPVCYEVLGNDTAKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFK----------------------AHMG 207 (296)
T ss_dssp CCCCTTSCCCCSCCSCCTTTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSS----------------------CCCH
T ss_pred ecCCCCCceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------Hhhh
Confidence 34444444444433332 334567788888899999999999999988765542 2346
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc----------chHHHHHHHHHHHhhhhhccchhheecchHHHHH
Q psy3982 84 AEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE----------INPLITIWGSVFAKANAVYNPIVYAISHPKFRQA 153 (185)
Q Consensus 84 ~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~ 153 (185)
+++|++|++..++++|++||+|+.+..++....... ....+..++.+++++||++||+||++++++||++
T Consensus 208 ~~~k~~~~~~~v~~~f~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~ 287 (296)
T 2lnl_A 208 QKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHG 287 (296)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHHHH
T ss_pred hhhhHHHHHHHhhhheeeeehHHHHHHHHHHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 678999999999999999999999999987765432 1235667889999999999999999999999999
Q ss_pred HHhhccc
Q psy3982 154 LDKKFPS 160 (185)
Q Consensus 154 ~~~~~~~ 160 (185)
++++++|
T Consensus 288 ~~~ll~c 294 (296)
T 2lnl_A 288 FLKILAM 294 (296)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999854
No 19
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=99.06 E-value=1.3e-10 Score=60.59 Aligned_cols=36 Identities=31% Similarity=0.623 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhhhhccchhheecchHHHHHHHhhcc
Q psy3982 124 ITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFP 159 (185)
Q Consensus 124 ~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~ 159 (185)
+..++.+++++||++||+||++.+++||++++++++
T Consensus 2 ~~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~ 37 (40)
T 2koe_A 2 VFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFP 37 (40)
T ss_dssp HHHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhh
Confidence 356788899999999999999999999999998874
No 20
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=98.42 E-value=8.8e-09 Score=51.12 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q psy3982 86 IKLAKVALMTISLWFLAWTPYLVINFGGI 114 (185)
Q Consensus 86 ~~~~~~~~~i~~~f~i~~~P~~v~~~~~~ 114 (185)
+|+.|++.+++++|++||+||++..++..
T Consensus 2 ~k~~k~l~~vv~~F~icW~P~~i~~~~~~ 30 (33)
T 2ki9_A 2 VRLAKTLGLVLAVLLICWFPVLALMAHSL 30 (33)
T ss_dssp CSSSSHHHHHHHHHTTTSSHHHHHHTTTT
T ss_pred chhhhhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46788999999999999999999876543
No 21
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=87.02 E-value=3.7 Score=31.62 Aligned_cols=91 Identities=9% Similarity=0.071 Sum_probs=40.2
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccchHHHHH--HHHHHHhhhhhccchhheecchHHHHHHH
Q psy3982 78 DQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITI--WGSVFAKANAVYNPIVYAISHPKFRQALD 155 (185)
Q Consensus 78 ~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~nPiiY~~~~~~fr~~~~ 155 (185)
.....+++++-.+....++++.+++.+-+.-..+............... ....+...-..+||.+--+.---+.+.++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~vv~~F~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~~~~~fR 401 (434)
T 4ea3_A 322 LSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFK 401 (434)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666555555444433333333332222111111111 11122222345677776666667788999
Q ss_pred hhcccccccccCC
Q psy3982 156 KKFPSLVCGTVES 168 (185)
Q Consensus 156 ~~~~~~~~~~~~~ 168 (185)
+.+++++|++..+
T Consensus 402 ~~~~~~~~~~~~~ 414 (434)
T 4ea3_A 402 ACFRKFCCASALG 414 (434)
T ss_dssp HHHC---------
T ss_pred HHHHHHhCccccC
Confidence 9998877665433
No 22
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=85.72 E-value=4.6 Score=31.87 Aligned_cols=79 Identities=13% Similarity=-0.042 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccchHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhccccccccc
Q psy3982 87 KLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTV 166 (185)
Q Consensus 87 ~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~~~~~~~ 166 (185)
+-.+....+++..+++.+-+.-..+....... ...........+...-..+|+.+=-+.-- +.+.+++.++++.|++.
T Consensus 416 ~~~r~~~~l~~iv~~F~lcwlP~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~~ 493 (514)
T 3sn6_R 416 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-QDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRR 493 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-STTSSCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccccchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCcCc
Confidence 44566666655555433322222222222211 11112223334444556677777777776 77889998887666554
Q ss_pred C
Q psy3982 167 E 167 (185)
Q Consensus 167 ~ 167 (185)
.
T Consensus 494 ~ 494 (514)
T 3sn6_R 494 S 494 (514)
T ss_dssp -
T ss_pred c
Confidence 3
No 23
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=84.20 E-value=4.8 Score=30.99 Aligned_cols=34 Identities=6% Similarity=-0.094 Sum_probs=18.5
Q ss_pred HHHhhhhhccchhheecchHHHHHHHhhcccccc
Q psy3982 130 VFAKANAVYNPIVYAISHPKFRQALDKKFPSLVC 163 (185)
Q Consensus 130 ~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~~~~ 163 (185)
.+..+-..+|+.+--+.---+.+.+++.+++...
T Consensus 298 ~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~ 331 (448)
T 2z73_A 298 QLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 331 (448)
T ss_dssp HHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHH
Confidence 3344444455555555555566677776665444
No 24
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=72.67 E-value=12 Score=27.42 Aligned_cols=35 Identities=6% Similarity=0.046 Sum_probs=22.4
Q ss_pred HHhhhhhccchhheecchHHHHHHHhhcccccccc
Q psy3982 131 FAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGT 165 (185)
Q Consensus 131 l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~~~~~~ 165 (185)
+...-..+|+.+--+.---+.+.+++.+++..|++
T Consensus 291 ~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c~ 325 (349)
T 1u19_A 291 IPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCG 325 (349)
T ss_dssp HHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhccc
Confidence 33344455666666666667889999888765543
No 25
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=70.00 E-value=6.1 Score=28.37 Aligned_cols=80 Identities=14% Similarity=0.001 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccchHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhcccccccc
Q psy3982 86 IKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGT 165 (185)
Q Consensus 86 ~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~~~~~~ 165 (185)
++-.|..-.++...++..+-+.-..+......... .........+...-..+|+.+--+.-- +.+.+++.++++.|++
T Consensus 225 ~~~~k~~~~~~~~~~~f~i~~~P~~i~~~~~~~~~-~~~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~ 302 (315)
T 4amj_A 225 MREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNR-DLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFP 302 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TSSCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC--
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCC
Confidence 34556655555555543333333333332222111 112223333444456678888888887 7889999998766554
Q ss_pred cC
Q psy3982 166 VE 167 (185)
Q Consensus 166 ~~ 167 (185)
..
T Consensus 303 ~~ 304 (315)
T 4amj_A 303 RK 304 (315)
T ss_dssp --
T ss_pred Cc
Confidence 43
No 26
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=69.25 E-value=1.3 Score=19.11 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=10.1
Q ss_pred hHHHHHHHhhccc
Q psy3982 148 PKFRQALDKKFPS 160 (185)
Q Consensus 148 ~~fr~~~~~~~~~ 160 (185)
+.||+.+++++++
T Consensus 4 krfrkkfkklfkk 16 (27)
T 2ket_A 4 KRFRKKFKKLFKK 16 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5788888888754
No 27
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=59.33 E-value=50 Score=24.20 Aligned_cols=32 Identities=9% Similarity=-0.058 Sum_probs=20.5
Q ss_pred hhhccchhheecchHHHHHHHhhccccccccc
Q psy3982 135 NAVYNPIVYAISHPKFRQALDKKFPSLVCGTV 166 (185)
Q Consensus 135 ~~~~nPiiY~~~~~~fr~~~~~~~~~~~~~~~ 166 (185)
-..+|+.+--+.---+.+.+++.+++..++..
T Consensus 293 l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~ 324 (364)
T 2ks9_A 293 LAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCP 324 (364)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcC
Confidence 34456665555555678889998886654443
No 28
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=54.13 E-value=18 Score=17.48 Aligned_cols=19 Identities=21% Similarity=0.551 Sum_probs=8.4
Q ss_pred HHHHHH-HHHHHHHHHHHHH
Q psy3982 39 VPLILI-IYAYYFIVRAVSV 57 (185)
Q Consensus 39 ~p~~i~-~~~y~~i~~~l~~ 57 (185)
+|++++ ++.|..+.+--++
T Consensus 7 l~~v~~~~ifYFl~iRPQ~K 26 (37)
T 2rdd_B 7 LMLVVFGLIFYFMILRPQQK 26 (37)
T ss_dssp HHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHH
Confidence 444433 4455544444443
No 29
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=53.36 E-value=18 Score=17.43 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3982 29 LIFYGFFVYFVPLILIIYAYYF 50 (185)
Q Consensus 29 ~~~~~~~~~~~p~~i~~~~y~~ 50 (185)
......++.++|.+.++..|++
T Consensus 7 ~fiAt~Lfi~iPt~FLlilYvq 28 (36)
T 3arc_M 7 GLIATALFVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhe
Confidence 3445566778999999888874
No 30
>3noh_A Putative peptide binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Ruminococcus gnavus}
Probab=26.79 E-value=31 Score=21.78 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.3
Q ss_pred hccchhheecchHHHHHHHhhc
Q psy3982 137 VYNPIVYAISHPKFRQALDKKF 158 (185)
Q Consensus 137 ~~nPiiY~~~~~~fr~~~~~~~ 158 (185)
++||.+=.+.+.++|+.++...
T Consensus 26 ~iNp~ld~~~~~~~R~~Lka~~ 47 (139)
T 3noh_A 26 CMNPLLDKLSDEDIREQLKAFV 47 (139)
T ss_dssp EECTTSGGGCCHHHHHHHHHHH
T ss_pred EeccccCccccHHHHHHHHHHh
Confidence 6788888899999999999876
No 31
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=24.46 E-value=2.4e+02 Score=21.54 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3982 35 FVYFVPLILIIYAYYFIVRAVS 56 (185)
Q Consensus 35 ~~~~~p~~i~~~~y~~i~~~l~ 56 (185)
+.+++-+++-++.++.+...+.
T Consensus 53 ~~~~~i~~~g~~gN~lvi~~~~ 74 (502)
T 3odu_A 53 TIYSIIFLTGIVGNGLVILVMG 74 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566666777666665
No 32
>2jx4_A Vasopressin V2 receptor; protein, G-protein coupled receptor, glycoprotein, lipoprotein, membrane, palmitate, phosphorylation, receptor transducer; HET: DGN NLE CCS; NMR {Synthetic}
Probab=20.60 E-value=31 Score=17.98 Aligned_cols=14 Identities=14% Similarity=0.147 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHH
Q psy3982 48 YYFIVRAVSVHEKQ 61 (185)
Q Consensus 48 y~~i~~~l~~~~~~ 61 (185)
|.+|++.+++..+.
T Consensus 2 y~~I~~~Iw~~~~~ 15 (52)
T 2jx4_A 2 QVLIFREIHASLVP 15 (52)
T ss_dssp CHHHHHHHHHHHTH
T ss_pred eEEEEeHHHhhCCc
Confidence 56777777766543
Done!