Query psy3982
Match_columns 185
No_of_seqs 118 out of 1506
Neff 10.2
Searched_HMMs 13730
Date Fri Aug 16 22:15:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3982.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3982hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u19a_ f.13.1.2 (A:) Rhodopsi 99.9 5.3E-23 3.9E-27 155.6 7.3 142 6-160 179-323 (348)
2 d1u19a_ f.13.1.2 (A:) Rhodopsi 91.0 0.14 1E-05 36.3 4.7 86 81-166 240-325 (348)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 67.7 4.1 0.0003 18.3 3.7 22 29-50 7-28 (36)
4 d1v54l_ f.23.6.1 (L:) Mitochon 16.8 58 0.0042 15.3 3.2 18 27-44 22-39 (46)
5 d1jb0i_ f.23.17.1 (I:) Subunit 13.0 68 0.005 14.2 3.2 21 31-51 14-34 (38)
6 d1ppjd2 f.23.11.1 (D:196-241) 12.5 82 0.006 14.8 3.0 19 85-103 7-25 (46)
7 d2axti1 f.23.37.1 (I:1-35) Pho 10.7 81 0.0059 13.7 3.3 14 89-102 4-17 (35)
8 d3cx5d2 f.23.11.1 (D:261-307) 10.3 1E+02 0.0074 14.6 3.0 19 84-102 6-24 (47)
9 d1xmec1 f.23.9.1 (C:2-34) Bact 7.4 1.1E+02 0.008 12.7 3.7 21 88-108 7-27 (33)
10 d1v54g_ f.23.2.1 (G:) Mitochon 5.7 2.2E+02 0.016 15.2 2.4 15 35-49 21-35 (84)
No 1
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=99.87 E-value=5.3e-23 Score=155.56 Aligned_cols=142 Identities=25% Similarity=0.545 Sum_probs=108.9
Q ss_pred cccCCccccccccccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCCch
Q psy3982 6 VPEGNLTACGTDYLTK--DWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS 83 (185)
Q Consensus 6 ~~~~~~~~C~~~~~~~--~~~~~~y~~~~~~~~~~~p~~i~~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (185)
..+.+...|...+... ......|.++...+.+++|+++++++|.++.+.++++.++.+ ....+.+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~-------------~~~~~~~ 245 (348)
T d1u19a_ 179 IPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ-------------ESATTQK 245 (348)
T ss_dssp EEETTTTEEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC-------------SSSHHHH
T ss_pred ccCCcccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc-------------hhhhhHH
Confidence 3444455555444332 234556777778888899999999999999888875433221 1233456
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhccc-chHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhccc
Q psy3982 84 AEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE-INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPS 160 (185)
Q Consensus 84 ~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~ 160 (185)
+++|++++++.++++|++||+|+.+..++....... ....+..+..+++++|+++||+||.+++++||++++++++|
T Consensus 246 ~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~c 323 (348)
T d1u19a_ 246 AEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCC 323 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTS
T ss_pred HHhhHhheEEEeehHHHHHhhHHHhhhheeeccCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCC
Confidence 789999999999999999999999888876655443 55667788899999999999999999999999999999854
No 2
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=90.98 E-value=0.14 Score=36.34 Aligned_cols=86 Identities=7% Similarity=-0.051 Sum_probs=44.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccchHHHHHHHHHHHhhhhhccchhheecchHHHHHHHhhccc
Q psy3982 81 GTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPS 160 (185)
Q Consensus 81 ~~~~~~~~~~~~~~i~~~f~i~~~P~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~nPiiY~~~~~~fr~~~~~~~~~ 160 (185)
.....++-.+..-.+.+..++..+-+.-..++..................+...-..+|+.+=-+.---+.+++|+.+++
T Consensus 240 ~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~ 319 (348)
T d1u19a_ 240 SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVT 319 (348)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhheeeccCCccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 33344444554444444444333333333333333333233344444455555556677766556655678889999886
Q ss_pred cccccc
Q psy3982 161 LVCGTV 166 (185)
Q Consensus 161 ~~~~~~ 166 (185)
+.|+++
T Consensus 320 ~l~c~~ 325 (348)
T d1u19a_ 320 TLCCGK 325 (348)
T ss_dssp HHTSSC
T ss_pred HhCCCC
Confidence 655443
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=67.71 E-value=4.1 Score=18.32 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3982 29 LIFYGFFVYFVPLILIIYAYYF 50 (185)
Q Consensus 29 ~~~~~~~~~~~p~~i~~~~y~~ 50 (185)
..+...++.++|.+.+++.|+.
T Consensus 7 g~iAt~LFilvPt~FLliLyvq 28 (36)
T d2axtm1 7 GLIATALFVLVPSVFLIILYVQ 28 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhee
Confidence 4455667778999998888874
No 4
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=16.85 E-value=58 Score=15.28 Aligned_cols=18 Identities=6% Similarity=0.244 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q psy3982 27 SYLIFYGFFVYFVPLILI 44 (185)
Q Consensus 27 ~y~~~~~~~~~~~p~~i~ 44 (185)
+...+.+...|..|++++
T Consensus 22 a~m~~~fGsgfa~PF~iv 39 (46)
T d1v54l_ 22 AMMTLFFGSGFAAPFFIV 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchHHHH
Confidence 344445555566776553
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=12.99 E-value=68 Score=14.18 Aligned_cols=21 Identities=14% Similarity=0.553 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3982 31 FYGFFVYFVPLILIIYAYYFI 51 (185)
Q Consensus 31 ~~~~~~~~~p~~i~~~~y~~i 51 (185)
++-++..+.|.++|-..++-|
T Consensus 14 ~iPvv~wl~p~vvMglLFiyI 34 (38)
T d1jb0i_ 14 FIPVVCWLMPTVVMGLLFLYI 34 (38)
T ss_dssp HHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHheee
Confidence 344556678888876665533
No 6
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=12.48 E-value=82 Score=14.82 Aligned_cols=19 Identities=26% Similarity=0.076 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy3982 85 EIKLAKVALMTISLWFLAW 103 (185)
Q Consensus 85 ~~~~~~~~~~i~~~f~i~~ 103 (185)
++-.++.++++.+..++++
T Consensus 7 K~mG~Kv~~~l~~l~~l~y 25 (46)
T d1ppjd2 7 KRMGLKMLLMMGLLLPLVY 25 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554443
No 7
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=10.74 E-value=81 Score=13.70 Aligned_cols=14 Identities=14% Similarity=0.446 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHH
Q psy3982 89 AKVALMTISLWFLA 102 (185)
Q Consensus 89 ~~~~~~i~~~f~i~ 102 (185)
.|+.+.+++.|+++
T Consensus 4 LKi~Vy~vV~fFv~ 17 (35)
T d2axti1 4 LKITVYIVVTFFVL 17 (35)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EEEehhhHHHHHHH
Confidence 44555555555544
No 8
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.28 E-value=1e+02 Score=14.57 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3982 84 AEIKLAKVALMTISLWFLA 102 (185)
Q Consensus 84 ~~~~~~~~~~~i~~~f~i~ 102 (185)
+++-.+|.++++.++++++
T Consensus 6 RK~mg~K~~~i~s~l~~~~ 24 (47)
T d3cx5d2 6 RKRLGLKTVIILSSLYLLS 24 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445566666666655544
No 9
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=7.35 E-value=1.1e+02 Score=12.73 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHH
Q psy3982 88 LAKVALMTISLWFLAWTPYLV 108 (185)
Q Consensus 88 ~~~~~~~i~~~f~i~~~P~~v 108 (185)
+.-.++++.+..+++|+-...
T Consensus 7 al~vi~il~l~ilvfw~gv~a 27 (33)
T d1xmec1 7 ALAVILVLTLTILVFWLGVYA 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666777765433
No 10
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.73 E-value=2.2e+02 Score=15.22 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHH
Q psy3982 35 FVYFVPLILIIYAYY 49 (185)
Q Consensus 35 ~~~~~p~~i~~~~y~ 49 (185)
+...+|.++++..++
T Consensus 21 ~~va~P~i~l~~~n~ 35 (84)
T d1v54g_ 21 FGLALPSVALCTLNS 35 (84)
T ss_dssp HHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334577777776665
Done!