RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3982
(185 letters)
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 212 bits (541), Expect = 7e-68
Identities = 60/181 (33%), Positives = 107/181 (59%), Gaps = 4/181 (2%)
Query: 4 RYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMR 63
Y EG L C DY+++D RS ++ +F P+++I + Y+ IV +VS HEK+M
Sbjct: 176 AYTLEGVLCNCSFDYISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMA 235
Query: 64 EQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGIL-EMVEINP 122
AK++N LR Q+G +AE++LAK++++ +S + L+W+PY V+ + + P
Sbjct: 236 AMAKRLNAKELRKA-QAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPLEWVTP 294
Query: 123 LITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSL--VCGTVESDSSSAASVQTNV 180
+FAKA+A++NP++Y++SHPKFR+A+ + FP + C + ++ +T +
Sbjct: 295 YAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKETEDDKDAETEI 354
Query: 181 T 181
Sbjct: 355 P 355
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 181 bits (462), Expect = 4e-57
Identities = 42/179 (23%), Positives = 83/179 (46%), Gaps = 16/179 (8%)
Query: 3 TRYVPEGNLTACGTDYLT--KDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEK 60
+RY+PEG +CG DY T ++ ++ S++I+ + +PLI+I + Y +V V
Sbjct: 177 SRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAA 236
Query: 61 QMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGIL-EMVE 119
Q +E A AE ++ ++ ++ + + + W PY + F + +
Sbjct: 237 QQQESATTQ-------------KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSD 283
Query: 120 INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVESDSSSAASVQT 178
P+ + FAK +AVYNP++Y + + +FR + + ++S+ S
Sbjct: 284 FGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVSKTE 342
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 71.8 bits (176), Expect = 3e-15
Identities = 28/177 (15%), Positives = 56/177 (31%), Gaps = 18/177 (10%)
Query: 3 TRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFV-YFVPLILIIYAYYFIVRAVSVHEKQ 61
E C + T + F + VP+++I Y ++R
Sbjct: 263 GSAQVEDEEIECLVEIPTPQDYWGPVFAICIFLFSFIVPVLVISVCYSLMIR-------- 314
Query: 62 MREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEIN 121
++ L SG + ++ ++ L+ ++++ WTP V L + +
Sbjct: 315 ------RLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSS 368
Query: 122 PL---ITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVESDSSSAAS 175
I + + N+ NPI+YA F+ K + G
Sbjct: 369 ETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALGRPLEVLFQGPH 425
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 58.9 bits (143), Expect = 7e-11
Identities = 27/186 (14%), Positives = 70/186 (37%), Gaps = 18/186 (9%)
Query: 3 TRYVPEGNLTACGTDY--LTKDWHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEK 60
+ + C ++ + + Y I +YF+PL++I YAY + ++
Sbjct: 169 STTETMPSRVVCMIEWPEHPNKIYEKVYHICVTVLIYFLPLLVIGYAYTVVGI--TLWAS 226
Query: 61 QMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPY----LVINFGGILE 116
++ + + + + K+ K+ ++ + + + W P+ L+ L
Sbjct: 227 EIPGDSSDRYHEQVSA--------KRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLY 278
Query: 117 MVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVESDSSSAASV 176
+ + + + A ++ +YNPI+Y + +FR F C + + +
Sbjct: 279 LKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRC--CPFISAGDYEGLEM 336
Query: 177 QTNVTD 182
++
Sbjct: 337 KSTRYL 342
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 58.8 bits (142), Expect = 1e-10
Identities = 32/170 (18%), Positives = 69/170 (40%), Gaps = 23/170 (13%)
Query: 25 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSA 84
+++Y I ++VPL+++++ Y + + +++ + + +V L +Q G +
Sbjct: 345 NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTG 404
Query: 85 ------------EIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPL---ITIWGS 129
E K K + + + L W P+ ++N +++ I + W
Sbjct: 405 HGLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNW-- 462
Query: 130 VFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVESDSSSAASVQTN 179
N+ +NP++Y P FR A F L+C S + +N
Sbjct: 463 -IGYVNSGFNPLIYC-RSPDFRIA----FQELLCLRRSSLKAYGNGYSSN 506
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 55.1 bits (133), Expect = 1e-09
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 26 RSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTSAE 85
R+Y I +++PL+++I+ + R +EQ +K++ A+ R + E
Sbjct: 175 RAYAIASSIISFYIPLLIMIFVALRVYREA-------KEQIRKIDRASKRKTSRVMLMRE 227
Query: 86 IKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPL---ITIWGSVFAKANAVYNPIV 142
K K + + ++ L W P+ ++N + + W AN+ NPI+
Sbjct: 228 HKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDLVPDWLFVAFNW---LGYANSAMNPII 284
Query: 143 YAISHPKFRQAL 154
Y S P FR+A
Sbjct: 285 YCRS-PDFRKAF 295
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 44.7 bits (105), Expect = 6e-06
Identities = 26/117 (22%), Positives = 43/117 (36%), Gaps = 9/117 (7%)
Query: 53 RAVSVHEKQMREQAKKMNVATLRSGDQSGTSA---EIKLAKVALMTISLWFLAWTPYLVI 109
A S Q +AK++ + S E+ AK + + L+ L W P +I
Sbjct: 355 LAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHII 414
Query: 110 NFGGIL--EMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCG 164
N + + V + N+V NP +YA +FRQ F ++
Sbjct: 415 NCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQT----FRKIIRS 467
Score = 36.3 bits (83), Expect = 0.004
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 22 DWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQS 80
D +Y++++ FF VPL+L++ Y I A + D
Sbjct: 185 DVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLNIFEMLRIDEGLRLKIYKDTE 244
Query: 81 GTS 83
G
Sbjct: 245 GYY 247
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 43.1 bits (101), Expect = 2e-05
Identities = 16/161 (9%), Positives = 32/161 (19%), Gaps = 26/161 (16%)
Query: 1 MRTRYVPEGNLTACGTDYLTKDWHHRSYLIFYGFFV-YFVPLILIIYAYYFIVRAVSVHE 59
C + W+ + L F + +P+++I Y ++ +
Sbjct: 153 FMATTKYRQGSIDCTLTFSHPTWYWENLLKICVFIFAFIMPVLIITVCYGLMILRLKSVR 212
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE 119
+ + Y I G +L
Sbjct: 213 NIFEMLRIDEGLRLKI------------------------YKNTEGYYTIGIGHLLTKSP 248
Query: 120 INPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPS 160
A I + F Q +D
Sbjct: 249 SLNAAKSELDK-AIGRNTNGVITKDEAEKLFNQDVDAAVRG 288
Score = 41.1 bits (96), Expect = 1e-04
Identities = 12/73 (16%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 87 KLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITI---WGSVFAKANAVYNPIVY 143
++ ++ L+ ++++ + WTP + L + T+ + N+ NP++Y
Sbjct: 380 RITRMVLVVVAVFIVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLY 439
Query: 144 AISHPKFRQALDK 156
A F++ +
Sbjct: 440 AFLDENFKRCFRE 452
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 40.8 bits (95), Expect = 1e-04
Identities = 27/116 (23%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 51 IVRAVSVHEKQMREQAKK--MNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLV 108
+ A S Q +AK+ T E K K + + + L W P+ +
Sbjct: 367 VNLAKSRWYNQTPNRAKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFI 426
Query: 109 INFGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQALDKKFPSLVCG 164
+N +++ I + I + N+ +NP++Y S P FR A F L+C
Sbjct: 427 VNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCRS-PDFRIA----FQELLCL 477
Score = 32.0 bits (72), Expect = 0.10
Identities = 6/44 (13%), Positives = 18/44 (40%)
Query: 25 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKK 68
+++Y I ++VPL+++++ Y + +
Sbjct: 203 NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLNIFEMLRID 246
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 40.4 bits (94), Expect = 2e-04
Identities = 14/71 (19%), Positives = 29/71 (40%)
Query: 83 SAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPIV 142
+ E K AK ++ + L W PY + N + ++ N+ NP++
Sbjct: 366 NRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLI 425
Query: 143 YAISHPKFRQA 153
Y + + F++
Sbjct: 426 YPLCNENFKKT 436
Score = 32.0 bits (72), Expect = 0.095
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 24 HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS 83
+ + +++P +L+++ Y I +AV H + D G
Sbjct: 167 DVTWFKVMTAIINFYLPTLLMLWFYAKIYKAVRQHCNIFEMLRIDEGLRLKIYKDTEGYY 226
Query: 84 A 84
Sbjct: 227 T 227
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 40.1 bits (93), Expect = 2e-04
Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 53 RAVSVHEKQMREQAKKMNVATLRSGDQ---SGTSAEIKLAKVALMTISLWFLAWTPYLVI 109
A S Q +AK++ T R+G E K ++ + + + + W P+ +
Sbjct: 362 LAKSRWYNQTPNRAKRVI-TTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLT 420
Query: 110 N-FGGILEMVEINPLITIWGSVFAKANAVYNPIVYAISHPKFRQA 153
+ + ++P + + N+ NP++Y + +FR+A
Sbjct: 421 HVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKA 465
Score = 32.4 bits (73), Expect = 0.072
Identities = 4/46 (8%), Positives = 20/46 (43%)
Query: 25 HRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMN 70
+ ++I+ +++P + + Y I + ++ + +++
Sbjct: 194 NPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRID 239
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 39.9 bits (93), Expect = 2e-04
Identities = 17/121 (14%), Positives = 29/121 (23%), Gaps = 28/121 (23%)
Query: 6 VPEGNLTACGTDYLTKDWHH--RSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMR 63
+ C Y W + I G + P I+I+ Y I+ +S +
Sbjct: 188 SEADDRYICDRFYPNDLWVVVFQFQHIMVGLIL---PGIVILSCYCIIISKLSHSGSNIF 244
Query: 64 EQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPL 123
E + L+ + Y I G +L
Sbjct: 245 EMLRIDEGLRLK-----------------------IYKDTEGYYTIGIGHLLTKSPSLNA 281
Query: 124 I 124
Sbjct: 282 A 282
Score = 38.4 bits (89), Expect = 8e-04
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 10/101 (9%)
Query: 73 TLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINP-------LIT 125
S + K K ++ I +F W PY + ++EI +
Sbjct: 396 GTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVH 455
Query: 126 IWGSV---FAKANAVYNPIVYAISHPKFRQALDKKFPSLVC 163
W S+ A + NPI+YA KF+ + S
Sbjct: 456 KWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRP 496
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 39.7 bits (92), Expect = 3e-04
Identities = 16/72 (22%), Positives = 28/72 (38%)
Query: 82 TSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVEINPLITIWGSVFAKANAVYNPI 141
S E K+ + L + + + W PY V+ I + G N+ NP
Sbjct: 380 PSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPA 439
Query: 142 VYAISHPKFRQA 153
YA+ + F++
Sbjct: 440 CYALCNATFKKT 451
Score = 33.1 bits (75), Expect = 0.044
Identities = 8/60 (13%), Positives = 18/60 (30%)
Query: 24 HHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQSGTS 83
+ + +++P+I++ Y+ I RA + D G
Sbjct: 182 SNAAVTFGTAIAAFYLPVIIMTVLYWHISRASKSRINIFEMLRIDEGLRLKIYKDTEGYY 241
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 38.5 bits (89), Expect = 7e-04
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 85 EIKLAKVALMTISLWFLAWTPYLVINFGGIL--EMVEINPLITIWGSVFAKANAVYNPIV 142
E+ AK + + L+ L W P +IN + + V + N+V NP +
Sbjct: 349 EVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFI 408
Query: 143 YAISHPKFRQA 153
YA +FRQ
Sbjct: 409 YAYRIREFRQT 419
Score = 34.7 bits (79), Expect = 0.013
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 22 DWHHRSYLIFYGFFVYF-VPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQS 80
D +Y++++ FF VPL+L++ Y I A + + L+ +++
Sbjct: 195 DVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLADLE-DNWETLNDNLKVIEKA 253
Query: 81 GTSAEIKLAKVALMTISLWFLAWTP 105
+A++K A + +L TP
Sbjct: 254 DNAAQVKDALTKMRAAALDAQKATP 278
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 37.2 bits (85), Expect = 0.002
Identities = 16/129 (12%), Positives = 45/129 (34%), Gaps = 6/129 (4%)
Query: 60 KQMREQAKKMNVATLRSGDQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFGGILEMVE 119
++ S +S + L K ++ +S++ W P ++ + +
Sbjct: 391 PNRAKRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLL--LDVGCK 448
Query: 120 INPLITIWGSVF----AKANAVYNPIVYAISHPKFRQALDKKFPSLVCGTVESDSSSAAS 175
+ ++ + + A N+ NPI+Y +++ + R+A + + +
Sbjct: 449 VKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRIMGRPLEVLFQGPHHHHHH 508
Query: 176 VQTNVTDDK 184
+ D
Sbjct: 509 HHHHDYKDD 517
Score = 26.0 bits (56), Expect = 8.4
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 23 WHHRSYLIFYGFFVYFVPLILIIYAYYFIVRAVSVHEKQMREQAKKMNVATLRSGDQ 79
+H+ Y++F V+ + L+ I+ Y I V + + + +
Sbjct: 215 LYHKHYILF-CTTVFTLLLLSIVILYCRIYSLVRTRNIFEMLRIDEGLRLKIYKDTE 270
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 27.4 bits (60), Expect = 0.49
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 129 SVFAKANAVYNPIVYAISHPKFRQALDKKFPS 160
S+ N+ NPI+YA+ R A FPS
Sbjct: 7 SMLCLLNSTVNPIIYALRSKDLRHAFRSMFPS 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 0.74
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 16/37 (43%)
Query: 151 RQALDKKFPSLVCGTVES-------DSSSAASVQTNV 180
+QAL KK +++ DS+ A +++ +
Sbjct: 19 KQAL-KK--------LQASLKLYADDSAPALAIKATM 46
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.9 bits (59), Expect = 5.8
Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 23/102 (22%)
Query: 65 QAKKMNVATLRSG-DQSGTSAEIKLAKVALMTISLWFLAWTPYLVINFG-GILEMVEINP 122
Q + M G D TS + +W A + +G IL++V NP
Sbjct: 1627 QEQGM-------GMDLYKTSKAAQ---------DVWNRA-DNHFKDTYGFSILDIVINNP 1669
Query: 123 L-ITIW--GSVFAKANAVYNPIVYAISHPKFRQALDKKFPSL 161
+ +TI G + Y+ +++ + + +K F +
Sbjct: 1670 VNLTIHFGGEKGKRIRENYSAMIFE-TIVDGKLKTEKIFKEI 1710
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2,
CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus
musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2
Length = 469
Score = 26.4 bits (57), Expect = 7.3
Identities = 7/62 (11%), Positives = 20/62 (32%), Gaps = 7/62 (11%)
Query: 24 HHRSYLIFYGFFVYFVPLILIIY------AYYFIVR-AVSVHEKQMREQAKKMNVATLRS 76
+ + G++ I + +Y ++ ++ V + + + TL
Sbjct: 56 NLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTICTLGI 115
Query: 77 GD 78
G
Sbjct: 116 GT 117
>2rl8_A Cation-dependent mannose-6-phosphate receptor; P-type lectin,
lectin, glycop lysosome, membrane, transmembrane,
transport; HET: NAG M6D; 1.45A {Bos taurus} SCOP:
b.64.1.1 PDB: 1keo_A* 2rl7_A* 2rl6_A* 2rl9_A* 2rlb_A*
3cy4_A* 3k41_A* 3k43_A* 3k42_A* 1m6p_A* 1c39_A*
Length = 154
Score = 25.5 bits (55), Expect = 8.0
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 162 VCGTVESDSSSAASVQTNVTDDK 184
VC SS A VQ ++ K
Sbjct: 51 VCREAGQHSSGAGLVQIQKSNGK 73
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.413
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,825,478
Number of extensions: 158011
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 364
Number of HSP's successfully gapped: 35
Length of query: 185
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,244,745
Effective search space: 411740265
Effective search space used: 411740265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.0 bits)