BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3983
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 268 bits (685), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/169 (79%), Positives = 149/169 (88%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR
Sbjct: 234 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 293
Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
RRKPDTIDVQQMKAQAREEK AKQ QR+KLQLEIAARE+AEKK QE +RL+Q++ EM +
Sbjct: 294 RRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEEMER 353
Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
+L+EAQ+MI RLEEQL+QLQAAKEELE RQ ELQ +Q + N+
Sbjct: 354 SQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNM 402
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 70/82 (85%), Positives = 74/82 (90%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV DQHKMS EWE SIT WW+EH+GMLREDAMMEYLKIAQDLEMYGVNYFEI+NKK
Sbjct: 154 PQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKN 213
Query: 65 TELWLGVDALGLNIYEKEDNLT 86
TELWLGVDALGLNIYEK+D LT
Sbjct: 214 TELWLGVDALGLNIYEKDDKLT 235
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 58/90 (64%), Gaps = 11/90 (12%)
Query: 66 ELWLGVDALGLNIYEKEDNLT------NVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQD 119
E+W GL + + +LT VM QDVKKENPLQFKFRAKFYPEDV +E+IQ+
Sbjct: 41 EVWF----FGLQYTDSKGDLTWIKLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQE 96
Query: 120 ITLRLFYLQVSRSAGS-RVRFPPGPNCLLT 148
ITL+LFYLQV + S + PP + LL
Sbjct: 97 ITLKLFYLQVKNAILSDEIYCPPETSVLLA 126
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of
Moesin
Length = 346
Score = 173 bits (438), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/94 (84%), Positives = 88/94 (93%)
Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
N LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHEL
Sbjct: 231 NDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHEL 290
Query: 204 YMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQ 237
YMRRRKPDTI+VQQMKAQAREEK+ KQ +R L+
Sbjct: 291 YMRRRKPDTIEVQQMKAQAREEKHQKQMERAMLE 324
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 71/82 (86%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++QHK++ +WE I W +EH+GMLREDA++EYLKIAQDLEMYGVNYF IKNKKG
Sbjct: 154 PQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKG 213
Query: 65 TELWLGVDALGLNIYEKEDNLT 86
+ELWLGVDALGLNIYE+ D LT
Sbjct: 214 SELWLGVDALGLNIYEQNDRLT 235
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 55/99 (55%), Gaps = 17/99 (17%)
Query: 51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPE 110
+G+ Y ++ KG WL ++ V +QDV+KE+PL FKFRAKFYPE
Sbjct: 44 FFGLQY---QDTKGFSTWLKLNK-------------KVTAQDVRKESPLLFKFRAKFYPE 87
Query: 111 DVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCLLT 148
DV EE+IQDIT RLF+LQV + PP LL
Sbjct: 88 DVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLA 126
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/83 (85%), Positives = 80/83 (96%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 236 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 295
Query: 207 RRKPDTIDVQQMKAQAREEKNAK 229
RRKPDTI+VQQMKAQAR + + +
Sbjct: 296 RRKPDTIEVQQMKAQARVDSSGR 318
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 63/82 (76%), Positives = 72/82 (87%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++QHK++ +WE I W +EH+GMLRED+MMEYLKIAQDLEMYGVNYFEIKNKKG
Sbjct: 156 PQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKG 215
Query: 65 TELWLGVDALGLNIYEKEDNLT 86
TELWLGVDALGLNIYE +D LT
Sbjct: 216 TELWLGVDALGLNIYEHDDKLT 237
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 17/99 (17%)
Query: 51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPE 110
+G+ Y + KG WL ++ V QDVKKENPLQFKFRAKF+PE
Sbjct: 46 FFGLQYVD---SKGYSTWLKLNK-------------KVTQQDVKKENPLQFKFRAKFFPE 89
Query: 111 DVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCLLT 148
DV EE+IQ+IT RLF+LQV + + PP LL
Sbjct: 90 DVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLA 128
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With
The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 71/82 (86%), Positives = 79/82 (96%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 293
Query: 207 RRKPDTIDVQQMKAQAREEKNA 228
RRKPDTI+VQQMKAQAR + +
Sbjct: 294 RRKPDTIEVQQMKAQARVDSSG 315
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 63/82 (76%), Positives = 72/82 (87%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++QHK++ +WE I W +EH+GMLRED+MMEYLKIAQDLEMYGVNYFEIKNKKG
Sbjct: 154 PQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKG 213
Query: 65 TELWLGVDALGLNIYEKEDNLT 86
TELWLGVDALGLNIYE +D LT
Sbjct: 214 TELWLGVDALGLNIYEHDDKLT 235
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 17/99 (17%)
Query: 51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPE 110
+G+ Y + KG WL ++ V QDVKKENPLQFKFRAKF+PE
Sbjct: 44 FFGLQYVD---SKGYSTWLKLNK-------------KVTQQDVKKENPLQFKFRAKFFPE 87
Query: 111 DVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCLLT 148
DV EE+IQ+IT RLF+LQV + + PP LL
Sbjct: 88 DVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLA 126
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 71/77 (92%), Positives = 77/77 (100%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 236 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 295
Query: 207 RRKPDTIDVQQMKAQAR 223
RRKPDTI+VQQMKAQAR
Sbjct: 296 RRKPDTIEVQQMKAQAR 312
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 63/82 (76%), Positives = 72/82 (87%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++QHK++ +WE I W +EH+GMLRED+MMEYLKIAQDLEMYGVNYFEIKNKKG
Sbjct: 156 PQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKG 215
Query: 65 TELWLGVDALGLNIYEKEDNLT 86
TELWLGVDALGLNIYE +D LT
Sbjct: 216 TELWLGVDALGLNIYEHDDKLT 237
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 17/99 (17%)
Query: 51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPE 110
+G+ Y + KG WL ++ V QDVKKENPLQFKFRAKF+PE
Sbjct: 46 FFGLQYVD---SKGYSTWLKLNK-------------KVTQQDVKKENPLQFKFRAKFFPE 89
Query: 111 DVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCLLT 148
DV EE+IQ+IT RLF+LQV + + PP LL
Sbjct: 90 DVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLA 128
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 71/77 (92%), Positives = 77/77 (100%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 293
Query: 207 RRKPDTIDVQQMKAQAR 223
RRKPDTI+VQQMKAQAR
Sbjct: 294 RRKPDTIEVQQMKAQAR 310
Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 63/82 (76%), Positives = 72/82 (87%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++QHK++ +WE I W +EH+GMLRED+MMEYLKIAQDLEMYGVNYFEIKNKKG
Sbjct: 154 PQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKG 213
Query: 65 TELWLGVDALGLNIYEKEDNLT 86
TELWLGVDALGLNIYE +D LT
Sbjct: 214 TELWLGVDALGLNIYEHDDKLT 235
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 17/99 (17%)
Query: 51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPE 110
+G+ Y + KG WL ++ V QDVKKENPLQFKFRAKF+PE
Sbjct: 44 FFGLQYVD---SKGYSTWLKLNK-------------KVTQQDVKKENPLQFKFRAKFFPE 87
Query: 111 DVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCLLT 148
DV EE+IQ+IT RLF+LQV + + PP LL
Sbjct: 88 DVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLA 126
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 161 bits (408), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 71/77 (92%), Positives = 77/77 (100%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 236 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 295
Query: 207 RRKPDTIDVQQMKAQAR 223
RRKPDTI+VQQMKAQAR
Sbjct: 296 RRKPDTIEVQQMKAQAR 312
Score = 140 bits (353), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 63/82 (76%), Positives = 72/82 (87%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++QHK++ +WE I W +EH+GMLRED+MMEYLKIAQDLEMYGVNYFEIKNKKG
Sbjct: 156 PQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKG 215
Query: 65 TELWLGVDALGLNIYEKEDNLT 86
TELWLGVDALGLNIYE +D LT
Sbjct: 216 TELWLGVDALGLNIYEHDDKLT 237
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 17/99 (17%)
Query: 51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPE 110
+G+ Y + KG WL ++ V QDVKKENPLQFKFRAKF+PE
Sbjct: 46 FFGLQYVD---SKGYSTWLKLNK-------------KVTQQDVKKENPLQFKFRAKFFPE 89
Query: 111 DVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCLLT 148
DV EE+IQ+IT RLF+LQV + + PP LL
Sbjct: 90 DVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLA 128
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/82 (76%), Positives = 72/82 (87%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++QHK++ +WE I W +EH+GMLRED+MMEYLKIAQDLEMYGVNYFEIKNKKG
Sbjct: 154 PQRVLEQHKLTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKG 213
Query: 65 TELWLGVDALGLNIYEKEDNLT 86
TELWLGVDALGLNIYE +D LT
Sbjct: 214 TELWLGVDALGLNIYEHDDKLT 235
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 59/64 (92%), Positives = 64/64 (100%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 234 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 293
Query: 207 RRKP 210
RRKP
Sbjct: 294 RRKP 297
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/99 (44%), Positives = 55/99 (55%), Gaps = 17/99 (17%)
Query: 51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPE 110
+G+ Y + KG WL ++ V QDVKKENPLQFKFRAKF+PE
Sbjct: 44 FFGLQYVD---SKGYSTWLKLNK-------------KVTQQDVKKENPLQFKFRAKFFPE 87
Query: 111 DVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCLLT 148
DV EE+IQ+IT RLF+LQV + + PP LL
Sbjct: 88 DVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLA 126
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 72/82 (87%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RVMDQHK++ +WE I W EH+GML+++AM+EYLKIAQDLEMYG+NYFEIKNKKG
Sbjct: 153 PQRVMDQHKLTRDQWEDRIQVWHAEHRGMLKDNAMLEYLKIAQDLEMYGINYFEIKNKKG 212
Query: 65 TELWLGVDALGLNIYEKEDNLT 86
T+LWLGVDALGLNIYEK+D LT
Sbjct: 213 TDLWLGVDALGLNIYEKDDKLT 234
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 58/64 (90%), Positives = 63/64 (98%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRIL LCMGNHELYMR
Sbjct: 233 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILQLCMGNHELYMR 292
Query: 207 RRKP 210
RRKP
Sbjct: 293 RRKP 296
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 57/97 (58%), Gaps = 17/97 (17%)
Query: 52 YGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPED 111
+G++Y + KG WL +D V +Q+V+KENPLQFKFRAKFYPED
Sbjct: 44 FGLHYVD---NKGFPTWLKLDK-------------KVSAQEVRKENPLQFKFRAKFYPED 87
Query: 112 VVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLL 147
V EE+IQDIT +LF+LQV S + PP LL
Sbjct: 88 VAEELIQDITQKLFFLQVKEGILSDEIYCPPETAVLL 124
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 60/67 (89%), Positives = 65/67 (97%)
Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
N LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHEL
Sbjct: 231 NDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHEL 290
Query: 204 YMRRRKP 210
YMRRRKP
Sbjct: 291 YMRRRKP 297
Score = 134 bits (338), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 71/82 (86%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++QHK++ +WE I W +EH+GMLREDA++EYLKIAQDLEMYGVNYF IKNKKG
Sbjct: 154 PQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKG 213
Query: 65 TELWLGVDALGLNIYEKEDNLT 86
+ELWLGVDALGLNIYE+ D LT
Sbjct: 214 SELWLGVDALGLNIYEQNDRLT 235
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 55/99 (55%), Gaps = 17/99 (17%)
Query: 51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPE 110
+G+ Y ++ KG WL ++ V +QDV+KE+PL FKFRAKFYPE
Sbjct: 44 FFGLQY---QDTKGFSTWLKLNK-------------KVTAQDVRKESPLLFKFRAKFYPE 87
Query: 111 DVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCLLT 148
DV EE+IQDIT RLF+LQV + PP LL
Sbjct: 88 DVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLA 126
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 134 bits (336), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 58/67 (86%), Positives = 63/67 (94%)
Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
N LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALC GNHEL
Sbjct: 228 NDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCXGNHEL 287
Query: 204 YMRRRKP 210
Y RRRKP
Sbjct: 288 YXRRRKP 294
Score = 130 bits (326), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 58/82 (70%), Positives = 69/82 (84%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++QHK++ +WE I W +EH+G LREDA++EYLKIAQDLE YGVNYF IKNKKG
Sbjct: 151 PQRVLEQHKLNKDQWEERIQVWHEEHRGXLREDAVLEYLKIAQDLEXYGVNYFSIKNKKG 210
Query: 65 TELWLGVDALGLNIYEKEDNLT 86
+ELWLGVDALGLNIYE+ D LT
Sbjct: 211 SELWLGVDALGLNIYEQNDRLT 232
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 55/99 (55%), Gaps = 17/99 (17%)
Query: 51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPE 110
+G+ Y ++ KG WL ++ V +QDV+KE+PL FKFRAKFYPE
Sbjct: 41 FFGLQY---QDTKGFSTWLKLNK-------------KVTAQDVRKESPLLFKFRAKFYPE 84
Query: 111 DVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCLLT 148
DV EE+IQDIT RLF+LQV + PP LL
Sbjct: 85 DVSEELIQDITQRLFFLQVKEGILNDDIYCPPETAVLLA 123
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 59/94 (62%), Positives = 76/94 (80%)
Query: 143 PNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE 202
P LTPKI FPW+EIRNIS++D++F IKP+DKK F F + ++RVNK IL LC+GNH+
Sbjct: 229 PENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHD 288
Query: 203 LYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKL 236
L+MRRRK D+++VQQMKAQAREEK KQ +R +L
Sbjct: 289 LFMRRRKADSLEVQQMKAQAREEKARKQMERQRL 322
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 69/86 (80%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++ ++M+P WE IT W+ EH+G R++A MEYLKIAQDLEMYGVNYF I+NKKG
Sbjct: 153 PKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTIRNKKG 212
Query: 65 TELWLGVDALGLNIYEKEDNLTNVMS 90
TEL LGVDALGL+IY+ E+ LT +S
Sbjct: 213 TELLLGVDALGLHIYDPENRLTPKIS 238
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPE 110
+G+ Y K T WL +D V+ DV KE P+ F F AKFYPE
Sbjct: 44 FFGLQY----TIKDTVAWLKMDK-------------KVLDHDVSKEEPVTFHFLAKFYPE 86
Query: 111 DVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCLLT 148
+ EE++Q+IT LF+LQV + +V PP + LL
Sbjct: 87 NAEEELVQEITQHLFFLQVKKQILDEKVYCPPEASVLLA 125
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 69/86 (80%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++ ++M+P WE IT W+ EH+G R++A MEYLKIAQDLEMYGVNYF I+NKKG
Sbjct: 171 PKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKG 230
Query: 65 TELWLGVDALGLNIYEKEDNLTNVMS 90
TEL LGVDALGL+IY+ E+ LT +S
Sbjct: 231 TELLLGVDALGLHIYDPENRLTPKIS 256
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 143 PNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE 202
P LTPKI FPW+EIRNIS++D++F IKP+DKK F F + ++RVNK IL LC+GNH+
Sbjct: 247 PENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHD 306
Query: 203 LYMRRRK 209
L+MRRRK
Sbjct: 307 LFMRRRK 313
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 88 VMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCL 146
V+ DV KE P+ F F AKFYPE+ EE++Q+IT LF+LQV + ++ PP + L
Sbjct: 82 VLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVL 141
Query: 147 LT 148
L
Sbjct: 142 LA 143
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 69/86 (80%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++ ++M+P WE IT W+ EH+G R++A MEYLKIAQDLEMYGVNYF I+NKKG
Sbjct: 171 PKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKG 230
Query: 65 TELWLGVDALGLNIYEKEDNLTNVMS 90
TEL LGVDALGL+IY+ E+ LT +S
Sbjct: 231 TELLLGVDALGLHIYDPENRLTPKIS 256
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 143 PNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE 202
P LTPKI FPW+EIRNIS++D++F IKP+DKK F F + ++RVNK IL LC+GNH+
Sbjct: 247 PENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHD 306
Query: 203 LYMRRRK 209
L+MRRRK
Sbjct: 307 LFMRRRK 313
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 88 VMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCL 146
V+ DV KE P+ F F AKFYPE+ EE++Q+IT LF+LQV + ++ PP + L
Sbjct: 82 VLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVL 141
Query: 147 LT 148
L
Sbjct: 142 LA 143
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 69/86 (80%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++ ++M+P WE IT W+ EH+G R++A MEYLKIAQDLEMYGVNYF I+NKKG
Sbjct: 158 PKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKG 217
Query: 65 TELWLGVDALGLNIYEKEDNLTNVMS 90
TEL LGVDALGL+IY+ E+ LT +S
Sbjct: 218 TELLLGVDALGLHIYDPENRLTPKIS 243
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 143 PNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE 202
P LTPKI FPW+EIRNIS++D++F IKP+DKK F F + ++RVNK IL LC+GNH+
Sbjct: 234 PENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHD 293
Query: 203 LYMRRRK 209
L+MRRRK
Sbjct: 294 LFMRRRK 300
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 88 VMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSA-GSRVRFPPGPNCL 146
V+ DV KE P+ F F AKFYPE+ EE++Q+IT LF+LQV + ++ PP + L
Sbjct: 69 VLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQVKKQILDEKIYCPPEASVL 128
Query: 147 LT 148
L
Sbjct: 129 LA 130
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 3 VSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNK 62
+S R H E E + K H+GM +A M +L+ A+ L MYGV+ K+
Sbjct: 143 ISEFRFAPNHT---KELEDKVIELHKSHRGMTPAEAEMHFLENAKKLSMYGVDLHHAKDS 199
Query: 63 KGTELWLGVDALGLNIY 79
+G E+ LGV A GL IY
Sbjct: 200 EGVEIMLGVCASGLLIY 216
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 3 VSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNK 62
+S R H E E + K H+GM +A M +L+ A+ L MYGV+ K+
Sbjct: 143 ISEFRFAPNHT---KELEDKVIELHKSHRGMTPAEAEMHFLENAKKLSMYGVDLHHAKDS 199
Query: 63 KGTELWLGVDALGLNIY 79
+G E+ LGV A GL IY
Sbjct: 200 EGVEIMLGVCASGLLIY 216
>pdb|3AU4|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette Bound
To Its Specific Cargo, Dcc
pdb|3AU5|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette
pdb|3AU5|B Chain B, Structure Of The Human Myosin-X Myth4-Ferm Cassette
Length = 555
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 17 SEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT---ELWLGVDA 73
S +SI W++ +GM +E AM +Y+ + ++ YG F+++ K+G ELWLGV A
Sbjct: 415 SSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSA 474
Query: 74 LGLNIYEKEDN 84
+++Y++ +
Sbjct: 475 DAVSVYKRGEG 485
>pdb|3PZD|A Chain A, Structure Of The Myosin X Myth4-FermDCC COMPLEX
Length = 511
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 17 SEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT---ELWLGVDA 73
S +SI W++ +GM +E AM +Y+ + ++ YG F+++ K+G ELWLGV A
Sbjct: 382 SSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSA 441
Query: 74 LGLNIYEKEDN 84
+++Y++ +
Sbjct: 442 DAVSVYKRGEG 452
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 13 KMSPS---EWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWL 69
K++P+ E E + K ++ M A +E+L+ A+ L MYGV+ + K+ +G ++ L
Sbjct: 145 KLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIIL 204
Query: 70 GVDALGLNIYE 80
GV + GL +Y+
Sbjct: 205 GVCSSGLLVYK 215
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 72 DALGLNIYEKEDNLTNVMSQDVKKE-------NPLQFKFRAKFYPEDVVEEIIQDITLRL 124
D GL I+ DN T+ D KE P F F KFYP D ++ +DIT
Sbjct: 40 DYFGLAIW---DNATSKTWLDSAKEIKKQVRGVPWNFTFNVKFYPPDPA-QLTEDITRYY 95
Query: 125 FYLQV 129
LQ+
Sbjct: 96 LCLQL 100
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 153 FPWSEIRNISFNDRKFIIK--PIDKK--APDFVFFAPRVRVNKRILALCMGNHELY 204
FPW ++ IS+ F IK P +++ F P R K++ +C+ +H +
Sbjct: 223 FPWPKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFF 278
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm Domain
Of Protein 4.1r
Length = 296
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 13 KMSPS---EWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWL 69
K++P+ E E + K ++ M A +E+L+ A+ L MYGV+ + K+ +G ++ L
Sbjct: 162 KLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIIL 221
Query: 70 GVDALGLNIYE 80
GV + GL +Y+
Sbjct: 222 GVCSSGLLVYK 232
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 11/65 (16%)
Query: 72 DALGLNIYEKEDNLTNVMSQDVKKE-------NPLQFKFRAKFYPEDVVEEIIQDITLRL 124
D GL I+ DN T+ D KE P F F KFYP D ++ +DIT
Sbjct: 57 DYFGLAIW---DNATSKTWLDSAKEIKKQVRGVPWNFTFNVKFYPPDPA-QLTEDITRYY 112
Query: 125 FYLQV 129
LQ+
Sbjct: 113 LCLQL 117
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 153 FPWSEIRNISFNDRKFIIK--PIDKKA--PDFVFFAPRVRVNKRILALCMGNHELY 204
FPW ++ IS+ F IK P +++ F P R K++ +C+ +H +
Sbjct: 240 FPWPKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFF 295
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 16/141 (11%)
Query: 187 VRV-NKRILALCMGNHELYMRRRKPD-TID-VQQMKAQAR-------EEKNAKQQQRDKL 236
VR+ + I+A +H RR PD ID + + A+ R EE +A +R KL
Sbjct: 354 VRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDA--LERKKL 411
Query: 237 QLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296
QLEI ++K +S ERLK +E E+AK +++ + + R E L++L+ A+ L+
Sbjct: 412 QLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLD 471
Query: 297 ARQTELQLELQPIRNQSNLNK 317
E++ E++ Q +LN+
Sbjct: 472 ----EVRREIELAERQYDLNR 488
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 74/142 (52%), Gaps = 16/142 (11%)
Query: 187 VRV-NKRILALCMGNHELYMRRRKPD-TID-VQQMKAQAR-------EEKNAKQQQRDKL 236
VR+ + I+A +H RR PD ID + + A+ R EE +A +R KL
Sbjct: 217 VRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAARLRMALESAPEEIDA--LERKKL 274
Query: 237 QLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296
QLEI ++K +S ERLK +E E+AK +++ + + R E L++L+ A+ L+
Sbjct: 275 QLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLD 334
Query: 297 ARQTELQLELQPIRNQSNLNKV 318
E++ E++ Q +LN+
Sbjct: 335 ----EVRREIELAERQYDLNRA 352
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%), Gaps = 3/39 (7%)
Query: 27 WKEHK--GMLRE-DAMMEYLKIAQDLEMYGVNYFEIKNK 62
++EHK G + E +A ++Y+K+A+ L YGV++F +K K
Sbjct: 98 FQEHKNCGEMSEIEAKVKYVKLARSLRTYGVSFFLVKEK 136
>pdb|1OKI|A Chain A, Crystal Structure Of Truncated Human Beta-B1-Crystallin
pdb|1OKI|B Chain B, Crystal Structure Of Truncated Human Beta-B1-Crystallin
Length = 210
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 27 WKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWL-GVDALGLNIYEKEDNL 85
W R D +M + I D + + ++ FE N KG + + G DA L +Y D +
Sbjct: 82 WNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGFSDRV 141
Query: 86 TNV 88
+V
Sbjct: 142 GSV 144
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex
Length = 222
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 27 WKEHK--GMLRE-DAMMEYLKIAQDLEMYGVNYFEIKNK 62
++ HK G + E +A + Y+K+A+ L+ YGV++F +K K
Sbjct: 97 FQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEK 135
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 3/101 (2%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
+ +++AQ E K ++ ++LQ +A E + +++++++LE ++ +DL E+
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL-ES 1134
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
++ R E KQ + EELEA +TEL+ L Q L
Sbjct: 1135 EKAARNKAE--KQKRDLSEELEALKTELEDTLDTTATQQEL 1173
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|D Chain D, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|F Chain F, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|H Chain H, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|J Chain J, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|L Chain L, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
Length = 202
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 27 WKEHK--GMLRE-DAMMEYLKIAQDLEMYGVNYFEIKNK 62
++ HK G + E +A + Y+K+A+ L+ YGV++F +K K
Sbjct: 72 FQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEK 110
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 27 WKEHK--GMLRE-DAMMEYLKIAQDLEMYGVNYFEIKNK 62
++ HK G + E +A + Y+K+A+ L+ YGV++F +K K
Sbjct: 251 FQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEK 289
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 192
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 37 DAMMEYLKIAQDLEMYGVNYFEIKNK 62
+A + Y+K+A+ L+ YGV++F +K K
Sbjct: 85 EAKVRYVKLARSLKTYGVSFFLVKEK 110
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 201
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 37 DAMMEYLKIAQDLEMYGVNYFEIKNK 62
+A + Y+K+A+ L+ YGV++F +K K
Sbjct: 94 EAKVRYVKLARSLKTYGVSFFLVKEK 119
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
Length = 206
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 37 DAMMEYLKIAQDLEMYGVNYFEIKNK 62
+A + Y+K+A+ L+ YGV++F +K K
Sbjct: 99 EAKVRYVKLARSLKTYGVSFFLVKEK 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,766,724
Number of Sequences: 62578
Number of extensions: 350627
Number of successful extensions: 1614
Number of sequences better than 100.0: 132
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 1396
Number of HSP's gapped (non-prelim): 257
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)