Query psy3983
Match_columns 318
No_of_seqs 231 out of 777
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 22:16:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3529|consensus 100.0 3.2E-47 7E-52 389.6 11.2 254 1-316 159-419 (596)
2 KOG3530|consensus 100.0 4.9E-33 1.1E-37 281.3 8.7 164 26-210 27-297 (616)
3 KOG3527|consensus 99.9 7E-26 1.5E-30 236.6 5.6 195 28-245 50-360 (975)
4 KOG0792|consensus 99.9 9E-25 1.9E-29 231.9 6.4 151 45-209 52-315 (1144)
5 cd00836 FERM_C FERM_C domain. 99.9 3.6E-24 7.8E-29 170.4 7.3 90 51-205 1-92 (92)
6 PF09380 FERM_C: FERM C-termin 99.9 6E-22 1.3E-26 156.4 5.3 89 61-212 1-90 (90)
7 KOG3531|consensus 99.7 8.3E-19 1.8E-23 183.4 0.8 155 42-211 66-323 (1036)
8 KOG3529|consensus 99.5 3.9E-15 8.4E-20 153.9 4.6 110 42-164 39-156 (596)
9 KOG3530|consensus 99.0 3.3E-10 7.2E-15 116.4 7.1 69 16-84 162-230 (616)
10 KOG3527|consensus 98.7 1.8E-08 3.9E-13 107.3 7.3 79 4-82 167-248 (975)
11 PF00769 ERM: Ezrin/radixin/mo 98.7 9.8E-08 2.1E-12 89.5 9.9 73 244-316 1-73 (246)
12 smart00295 B41 Band 4.1 homolo 98.5 3.3E-07 7.1E-12 80.0 7.1 95 40-149 28-127 (207)
13 KOG4371|consensus 98.5 7.1E-08 1.5E-12 104.3 3.2 144 2-208 665-820 (1332)
14 PF09379 FERM_N: FERM N-termin 98.4 6.9E-07 1.5E-11 68.4 5.7 55 42-109 23-80 (80)
15 PF00373 FERM_M: FERM central 98.3 2E-06 4.3E-11 69.9 6.1 53 3-57 72-126 (126)
16 KOG3531|consensus 98.1 9E-07 2E-11 94.4 1.4 110 16-148 189-299 (1036)
17 KOG0792|consensus 98.1 5.1E-06 1.1E-10 90.6 6.2 68 17-84 183-250 (1144)
18 PF00373 FERM_M: FERM central 96.5 0.00093 2E-08 54.2 1.0 34 116-149 5-39 (126)
19 KOG0248|consensus 95.2 0.025 5.5E-07 60.5 4.9 78 3-82 750-832 (936)
20 PF09726 Macoilin: Transmembra 95.1 0.27 6E-06 53.0 12.5 34 253-286 543-576 (697)
21 KOG4261|consensus 94.9 0.019 4.2E-07 62.0 3.3 67 2-74 262-333 (1003)
22 KOG3727|consensus 94.3 0.057 1.2E-06 56.7 4.8 56 2-59 504-559 (664)
23 PF09726 Macoilin: Transmembra 91.5 3.9 8.5E-05 44.4 13.8 39 274-312 543-581 (697)
24 PF00261 Tropomyosin: Tropomyo 90.7 1.8 3.8E-05 40.4 9.1 90 215-304 3-92 (237)
25 PF00769 ERM: Ezrin/radixin/mo 89.8 4.5 9.7E-05 38.3 11.1 38 267-304 80-117 (246)
26 KOG1029|consensus 89.5 6.4 0.00014 43.5 13.1 30 190-222 316-345 (1118)
27 PRK11637 AmiB activator; Provi 88.5 9.2 0.0002 38.4 12.9 53 246-298 73-125 (428)
28 TIGR03319 YmdA_YtgF conserved 88.3 18 0.00038 38.0 15.2 7 309-315 138-144 (514)
29 PRK11637 AmiB activator; Provi 88.2 7.2 0.00016 39.2 12.0 63 246-308 66-128 (428)
30 PTZ00266 NIMA-related protein 87.9 8 0.00017 43.8 13.1 19 222-240 441-459 (1021)
31 PRK12704 phosphodiesterase; Pr 87.5 18 0.00038 38.0 14.7 17 255-271 82-98 (520)
32 PTZ00266 NIMA-related protein 87.5 6.5 0.00014 44.5 12.1 7 22-28 130-136 (1021)
33 PRK12704 phosphodiesterase; Pr 86.9 21 0.00047 37.4 14.9 23 253-275 87-109 (520)
34 PRK10884 SH3 domain-containing 85.8 7.2 0.00016 36.2 9.7 33 278-310 134-166 (206)
35 KOG1029|consensus 85.0 15 0.00032 40.9 12.7 36 250-285 352-387 (1118)
36 PRK09510 tolA cell envelope in 84.7 29 0.00063 35.4 14.1 6 256-261 102-107 (387)
37 PRK00106 hypothetical protein; 83.4 33 0.00072 36.3 14.3 11 261-271 103-113 (535)
38 KOG0742|consensus 83.4 27 0.00059 36.7 13.3 19 214-232 118-136 (630)
39 COG4372 Uncharacterized protei 82.8 28 0.0006 36.0 12.9 73 222-297 93-165 (499)
40 PF07888 CALCOCO1: Calcium bin 82.4 34 0.00074 36.4 13.9 42 270-311 411-452 (546)
41 PF08317 Spc7: Spc7 kinetochor 82.1 43 0.00094 32.7 13.8 55 256-310 210-264 (325)
42 PF08826 DMPK_coil: DMPK coile 80.0 18 0.0004 27.7 8.3 48 250-297 13-60 (61)
43 PF04156 IncA: IncA protein; 80.0 42 0.00091 29.6 14.7 24 276-299 158-181 (191)
44 KOG4460|consensus 80.0 64 0.0014 34.8 14.8 114 190-315 535-648 (741)
45 PTZ00121 MAEBL; Provisional 79.0 35 0.00076 40.5 13.3 10 118-127 947-956 (2084)
46 KOG2412|consensus 78.7 12 0.00026 39.8 9.0 40 224-263 204-243 (591)
47 KOG1962|consensus 78.3 31 0.00066 32.7 10.9 61 247-307 150-210 (216)
48 COG3064 TolA Membrane protein 77.3 49 0.0011 33.4 12.4 16 253-268 99-114 (387)
49 KOG0161|consensus 77.2 42 0.00091 40.7 13.9 33 190-223 808-841 (1930)
50 PF07888 CALCOCO1: Calcium bin 76.7 1.1E+02 0.0024 32.7 17.7 13 64-76 35-47 (546)
51 PF04102 SlyX: SlyX; InterPro 75.8 17 0.00037 27.9 7.2 50 247-296 3-52 (69)
52 PF04111 APG6: Autophagy prote 75.4 33 0.0007 33.7 10.7 69 246-314 69-137 (314)
53 PLN03086 PRLI-interacting fact 75.4 16 0.00034 39.1 9.0 35 220-254 11-45 (567)
54 PF00261 Tropomyosin: Tropomyo 74.8 53 0.0012 30.5 11.6 31 277-307 177-207 (237)
55 PRK09039 hypothetical protein; 74.1 78 0.0017 31.4 13.1 59 250-308 118-176 (343)
56 PF12718 Tropomyosin_1: Tropom 73.4 63 0.0014 28.2 13.1 21 248-268 35-55 (143)
57 PF10146 zf-C4H2: Zinc finger- 72.2 90 0.002 29.6 13.9 16 278-293 62-77 (230)
58 KOG0163|consensus 72.2 75 0.0016 35.7 13.1 20 113-132 776-795 (1259)
59 PRK15422 septal ring assembly 72.1 28 0.00061 28.1 7.7 55 257-311 6-60 (79)
60 PHA02562 46 endonuclease subun 71.6 1.2E+02 0.0027 30.9 14.5 39 250-288 332-370 (562)
61 PF04111 APG6: Autophagy prote 71.1 1.1E+02 0.0024 30.0 14.6 65 247-311 56-120 (314)
62 PTZ00121 MAEBL; Provisional 70.7 64 0.0014 38.5 12.7 7 210-216 1113-1119(2084)
63 COG4942 Membrane-bound metallo 70.0 47 0.001 34.3 10.7 47 246-292 64-110 (420)
64 COG4942 Membrane-bound metallo 68.9 1.3E+02 0.0028 31.2 13.5 14 259-272 214-227 (420)
65 PRK02793 phi X174 lysis protei 68.7 40 0.00086 26.3 7.8 47 246-292 6-52 (72)
66 PRK02119 hypothetical protein; 68.4 45 0.00097 26.1 8.1 46 246-291 7-52 (73)
67 PRK10884 SH3 domain-containing 67.7 1E+02 0.0022 28.6 11.6 38 267-304 130-167 (206)
68 PRK00736 hypothetical protein; 67.6 46 0.00099 25.7 7.8 46 247-292 4-49 (68)
69 PRK00295 hypothetical protein; 67.3 52 0.0011 25.4 8.1 45 247-291 4-48 (68)
70 PF09744 Jnk-SapK_ap_N: JNK_SA 66.6 98 0.0021 27.8 12.0 55 248-302 89-143 (158)
71 PF10146 zf-C4H2: Zinc finger- 66.6 1.2E+02 0.0026 28.8 13.5 52 261-312 52-103 (230)
72 PF11180 DUF2968: Protein of u 66.6 1.1E+02 0.0024 28.5 13.7 109 181-314 77-185 (192)
73 PF06428 Sec2p: GDP/GTP exchan 66.5 9.8 0.00021 31.7 4.2 30 235-264 2-31 (100)
74 KOG0161|consensus 66.1 1.4E+02 0.003 36.7 14.7 65 244-308 904-975 (1930)
75 PF12718 Tropomyosin_1: Tropom 66.0 91 0.002 27.2 11.2 53 252-304 77-129 (143)
76 PRK04406 hypothetical protein; 65.7 50 0.0011 26.1 7.9 45 246-290 9-53 (75)
77 TIGR01069 mutS2 MutS2 family p 65.3 48 0.001 36.4 10.3 19 246-264 541-559 (771)
78 PRK04325 hypothetical protein; 65.0 54 0.0012 25.7 7.9 45 247-291 8-52 (74)
79 COG4372 Uncharacterized protei 64.7 1.8E+02 0.004 30.2 14.6 26 214-239 92-117 (499)
80 PF14662 CCDC155: Coiled-coil 64.6 1.2E+02 0.0027 28.3 11.7 59 252-310 47-108 (193)
81 PF08317 Spc7: Spc7 kinetochor 64.1 1.5E+02 0.0032 29.0 13.7 55 250-304 211-265 (325)
82 PF13851 GAS: Growth-arrest sp 64.0 1.2E+02 0.0026 27.9 14.0 62 244-309 65-126 (201)
83 COG3074 Uncharacterized protei 64.0 59 0.0013 26.1 7.8 33 259-291 8-40 (79)
84 KOG1265|consensus 63.7 90 0.002 35.5 11.8 42 234-275 1114-1155(1189)
85 PRK00846 hypothetical protein; 63.4 64 0.0014 25.8 8.1 51 244-294 9-59 (77)
86 PF12072 DUF3552: Domain of un 63.4 1.2E+02 0.0026 27.6 14.1 21 255-275 85-105 (201)
87 PF10168 Nup88: Nuclear pore c 62.9 58 0.0013 35.7 10.3 14 210-223 532-545 (717)
88 PF11932 DUF3450: Protein of u 62.6 1.3E+02 0.0029 28.0 14.5 83 214-299 25-107 (251)
89 COG1196 Smc Chromosome segrega 62.6 2E+02 0.0044 32.9 14.9 22 278-299 872-893 (1163)
90 PLN03086 PRLI-interacting fact 62.4 54 0.0012 35.1 9.7 46 233-282 9-54 (567)
91 KOG1962|consensus 60.9 1.1E+02 0.0025 28.9 10.6 50 260-309 149-198 (216)
92 PF11559 ADIP: Afadin- and alp 60.8 1.1E+02 0.0023 26.3 11.8 15 186-200 33-47 (151)
93 PRK12705 hypothetical protein; 60.7 2.2E+02 0.0047 30.2 13.7 17 255-271 84-100 (508)
94 PF06785 UPF0242: Uncharacteri 60.6 1.4E+02 0.0031 30.4 11.7 58 250-307 129-186 (401)
95 PF05911 DUF869: Plant protein 60.5 1.5E+02 0.0033 33.0 12.9 91 220-310 62-154 (769)
96 KOG4371|consensus 60.3 4.3 9.4E-05 46.0 1.3 39 97-136 114-152 (1332)
97 PTZ00491 major vault protein; 60.0 79 0.0017 35.5 10.7 15 102-116 411-425 (850)
98 TIGR01069 mutS2 MutS2 family p 59.8 77 0.0017 34.9 10.7 14 35-48 269-282 (771)
99 PF09304 Cortex-I_coil: Cortex 59.6 62 0.0013 27.6 7.8 66 239-304 28-93 (107)
100 KOG4571|consensus 59.4 53 0.0012 32.4 8.4 14 60-73 38-51 (294)
101 KOG0994|consensus 59.4 2.4E+02 0.0053 33.3 14.3 29 256-284 1599-1627(1758)
102 PF04502 DUF572: Family of unk 59.3 64 0.0014 31.7 9.1 10 104-113 7-16 (324)
103 PRK14474 F0F1 ATP synthase sub 58.3 1.7E+02 0.0037 27.7 12.8 31 236-266 45-75 (250)
104 PF12777 MT: Microtubule-bindi 57.8 1.2E+02 0.0025 29.9 10.7 25 188-212 194-218 (344)
105 PRK00409 recombination and DNA 56.4 91 0.002 34.4 10.5 26 25-50 264-289 (782)
106 cd00435 ACBP Acyl CoA binding 55.9 12 0.00025 30.0 2.8 25 25-49 56-80 (85)
107 PF00887 ACBP: Acyl CoA bindin 55.9 7.9 0.00017 30.6 1.8 26 24-49 57-82 (87)
108 KOG2412|consensus 55.7 2.7E+02 0.0058 30.1 13.3 51 225-275 198-248 (591)
109 PF08614 ATG16: Autophagy prot 54.9 1.5E+02 0.0033 26.7 10.1 20 188-207 71-90 (194)
110 KOG0163|consensus 54.8 2.9E+02 0.0063 31.4 13.6 12 210-221 912-923 (1259)
111 PF05667 DUF812: Protein of un 54.7 75 0.0016 34.1 9.3 11 43-53 72-82 (594)
112 PF07246 Phlebovirus_NSM: Phle 54.4 2.1E+02 0.0045 28.0 11.4 35 281-315 207-241 (264)
113 TIGR03185 DNA_S_dndD DNA sulfu 54.2 3E+02 0.0065 29.4 13.7 7 269-275 237-243 (650)
114 PF05262 Borrelia_P83: Borreli 54.0 2.8E+02 0.006 29.4 13.1 9 166-174 153-161 (489)
115 PF06005 DUF904: Protein of un 53.9 1.1E+02 0.0023 24.1 8.9 39 257-295 6-44 (72)
116 PF11180 DUF2968: Protein of u 53.6 1.9E+02 0.0042 27.0 11.8 77 235-311 99-175 (192)
117 PRK02224 chromosome segregatio 53.5 3.3E+02 0.0072 29.7 14.9 11 185-195 146-156 (880)
118 PF12072 DUF3552: Domain of un 52.9 1.8E+02 0.0039 26.5 14.3 23 254-276 77-99 (201)
119 PRK00409 recombination and DNA 52.9 1.1E+02 0.0023 33.8 10.4 11 250-260 550-560 (782)
120 COG4026 Uncharacterized protei 52.7 1.4E+02 0.0031 28.9 9.8 57 249-305 150-206 (290)
121 KOG0976|consensus 52.7 1.4E+02 0.0031 33.8 11.0 119 189-308 35-159 (1265)
122 KOG0980|consensus 52.6 3.5E+02 0.0077 30.9 14.0 42 256-297 446-487 (980)
123 PRK04863 mukB cell division pr 52.5 2.6E+02 0.0057 33.4 13.8 15 250-264 316-330 (1486)
124 PRK10698 phage shock protein P 52.3 2E+02 0.0044 26.8 13.1 52 250-301 94-145 (222)
125 COG1579 Zn-ribbon protein, pos 51.8 2.3E+02 0.0049 27.2 15.0 40 271-310 98-137 (239)
126 PF12128 DUF3584: Protein of u 50.9 4E+02 0.0087 30.8 14.8 20 250-269 687-706 (1201)
127 PRK13729 conjugal transfer pil 50.9 81 0.0018 33.2 8.6 14 251-264 79-92 (475)
128 KOG4364|consensus 50.4 2.6E+02 0.0057 31.0 12.4 21 213-233 248-268 (811)
129 PF05529 Bap31: B-cell recepto 50.1 87 0.0019 28.0 7.8 21 277-297 162-182 (192)
130 PF10186 Atg14: UV radiation r 49.3 2.2E+02 0.0047 26.3 14.1 6 181-186 11-16 (302)
131 PF12368 DUF3650: Protein of u 49.1 13 0.00028 24.6 1.7 19 7-25 9-27 (28)
132 PF12128 DUF3584: Protein of u 48.9 3.6E+02 0.0078 31.2 14.1 28 270-297 477-504 (1201)
133 PF04568 IATP: Mitochondrial A 48.5 91 0.002 26.1 7.1 42 217-261 55-96 (100)
134 PF06156 DUF972: Protein of un 48.5 1.6E+02 0.0036 24.7 8.7 55 250-304 3-57 (107)
135 PF15236 CCDC66: Coiled-coil d 48.1 2.1E+02 0.0046 25.8 12.7 37 260-296 103-139 (157)
136 PF12777 MT: Microtubule-bindi 47.6 60 0.0013 31.9 6.8 27 245-271 225-251 (344)
137 PF09304 Cortex-I_coil: Cortex 47.5 1.8E+02 0.0039 24.8 12.0 16 256-271 59-74 (107)
138 COG2433 Uncharacterized conser 47.1 3.9E+02 0.0085 29.3 13.0 56 248-303 450-508 (652)
139 KOG1853|consensus 46.2 3.1E+02 0.0067 27.2 13.0 47 253-299 106-156 (333)
140 COG3883 Uncharacterized protei 46.1 2E+02 0.0043 28.1 9.9 47 253-299 50-96 (265)
141 PF05266 DUF724: Protein of un 46.0 2.4E+02 0.0052 25.9 12.0 49 244-292 127-175 (190)
142 KOG0971|consensus 45.8 5.2E+02 0.011 30.0 14.0 57 250-306 299-355 (1243)
143 cd01215 Dab Disabled (Dab) Pho 45.7 34 0.00074 30.2 4.3 24 61-84 49-72 (139)
144 PF11932 DUF3450: Protein of u 45.6 2.6E+02 0.0056 26.1 11.9 47 250-296 51-97 (251)
145 KOG0977|consensus 45.3 3.6E+02 0.0079 29.0 12.4 8 180-187 88-95 (546)
146 TIGR00606 rad50 rad50. This fa 45.2 4.8E+02 0.01 30.4 14.4 48 249-296 882-929 (1311)
147 PF05278 PEARLI-4: Arabidopsis 45.0 3.1E+02 0.0067 26.9 11.8 52 253-304 205-256 (269)
148 PF02841 GBP_C: Guanylate-bind 44.6 2.9E+02 0.0063 26.5 13.1 25 247-271 235-259 (297)
149 KOG2189|consensus 44.5 1.1E+02 0.0025 34.0 8.8 65 249-313 57-136 (829)
150 PF04849 HAP1_N: HAP1 N-termin 44.5 3.4E+02 0.0073 27.1 12.3 62 250-311 243-304 (306)
151 PF10168 Nup88: Nuclear pore c 44.4 4E+02 0.0087 29.4 13.0 53 247-299 557-609 (717)
152 PF15556 Zwint: ZW10 interacto 44.3 2.8E+02 0.0061 26.6 10.3 8 189-196 63-70 (252)
153 PF06637 PV-1: PV-1 protein (P 44.2 3.4E+02 0.0075 28.2 11.6 36 229-264 302-340 (442)
154 TIGR02680 conserved hypothetic 43.9 6.1E+02 0.013 30.0 15.3 25 270-294 355-379 (1353)
155 PF03962 Mnd1: Mnd1 family; I 43.8 2.5E+02 0.0055 25.5 11.5 47 249-295 104-154 (188)
156 PF10480 ICAP-1_inte_bdg: Beta 43.7 96 0.0021 29.1 7.1 41 38-84 87-127 (200)
157 PRK09174 F0F1 ATP synthase sub 43.6 2.5E+02 0.0054 25.9 9.8 27 239-265 96-122 (204)
158 PF08703 PLC-beta_C: PLC-beta 43.3 2.7E+02 0.0059 25.7 13.8 77 233-309 90-168 (185)
159 COG1579 Zn-ribbon protein, pos 42.2 3.2E+02 0.007 26.2 12.9 14 256-269 104-117 (239)
160 PF04102 SlyX: SlyX; InterPro 41.9 1.6E+02 0.0034 22.6 7.6 47 253-299 2-48 (69)
161 PRK14475 F0F1 ATP synthase sub 41.7 2.4E+02 0.0053 24.7 13.0 34 234-267 48-81 (167)
162 PTZ00458 acyl CoA binding prot 41.3 26 0.00056 28.6 2.7 24 26-49 59-82 (90)
163 PRK13460 F0F1 ATP synthase sub 41.2 2.5E+02 0.0055 24.7 12.8 33 235-267 55-87 (173)
164 KOG2391|consensus 41.1 2.3E+02 0.005 28.8 9.7 48 257-307 237-284 (365)
165 PF14282 FlxA: FlxA-like prote 41.0 2.1E+02 0.0045 23.7 8.2 53 251-303 22-78 (106)
166 PF10174 Cast: RIM-binding pro 40.9 5.6E+02 0.012 28.7 13.8 15 213-227 39-53 (775)
167 PF12999 PRKCSH-like: Glucosid 40.8 1.5E+02 0.0033 27.2 7.8 82 183-268 88-173 (176)
168 KOG0962|consensus 40.7 3.8E+02 0.0082 31.8 12.4 35 265-299 895-929 (1294)
169 PRK09039 hypothetical protein; 40.7 3.8E+02 0.0082 26.6 12.3 44 235-278 124-167 (343)
170 PF06005 DUF904: Protein of un 40.7 1.8E+02 0.0039 22.8 9.5 49 253-301 9-57 (72)
171 PF09744 Jnk-SapK_ap_N: JNK_SA 40.4 2.7E+02 0.0059 24.9 10.9 42 238-289 68-109 (158)
172 KOG2891|consensus 40.4 4E+02 0.0087 26.8 11.7 14 35-48 81-94 (445)
173 KOG2891|consensus 40.3 4E+02 0.0087 26.8 12.7 9 218-226 336-344 (445)
174 PF06409 NPIP: Nuclear pore co 40.3 3E+02 0.0065 26.8 9.9 43 247-289 133-175 (265)
175 PF09766 FimP: Fms-interacting 39.4 2E+02 0.0044 28.7 9.2 48 234-281 94-141 (355)
176 PF14073 Cep57_CLD: Centrosome 39.2 3.2E+02 0.0068 25.3 12.3 53 254-306 119-171 (178)
177 PRK13460 F0F1 ATP synthase sub 39.1 2.5E+02 0.0055 24.7 8.9 20 248-267 61-80 (173)
178 TIGR03321 alt_F1F0_F0_B altern 38.7 3.3E+02 0.0072 25.4 12.8 26 240-265 49-74 (246)
179 KOG4661|consensus 38.5 3.9E+02 0.0085 29.4 11.4 14 231-244 609-622 (940)
180 KOG2072|consensus 38.5 4.1E+02 0.0088 30.3 11.8 8 295-302 675-682 (988)
181 cd00824 PTBI IRS-like phosphot 38.2 78 0.0017 26.5 5.2 36 151-186 44-82 (104)
182 smart00787 Spc7 Spc7 kinetocho 38.2 4.1E+02 0.0088 26.3 13.1 55 257-311 206-260 (312)
183 TIGR02977 phageshock_pspA phag 38.2 3.2E+02 0.007 25.1 11.5 82 233-314 44-137 (219)
184 PRK05759 F0F1 ATP synthase sub 37.8 2.6E+02 0.0055 23.8 8.5 36 234-269 42-77 (156)
185 PF14662 CCDC155: Coiled-coil 37.6 3.5E+02 0.0076 25.3 11.4 21 248-268 67-87 (193)
186 PF10212 TTKRSYEDQ: Predicted 37.4 3.9E+02 0.0084 28.6 11.1 62 203-264 417-478 (518)
187 PRK08475 F0F1 ATP synthase sub 37.4 2.5E+02 0.0053 24.9 8.5 64 253-316 51-115 (167)
188 KOG0612|consensus 37.3 7.3E+02 0.016 29.5 13.8 19 1-19 154-176 (1317)
189 PRK04778 septation ring format 37.1 5.2E+02 0.011 27.2 12.7 60 234-293 296-365 (569)
190 KOG4657|consensus 36.8 4E+02 0.0087 25.8 12.0 53 253-305 63-115 (246)
191 TIGR02231 conserved hypothetic 36.7 2.9E+02 0.0063 28.5 10.2 15 210-224 68-82 (525)
192 PF13094 CENP-Q: CENP-Q, a CEN 36.7 2.2E+02 0.0047 24.8 8.0 48 251-298 37-84 (160)
193 KOG1003|consensus 36.5 2.2E+02 0.0048 26.9 8.3 67 246-312 2-68 (205)
194 TIGR01005 eps_transp_fam exopo 36.3 5.8E+02 0.013 27.5 13.7 93 208-304 311-404 (754)
195 COG1842 PspA Phage shock prote 36.2 3.8E+02 0.0082 25.3 13.2 48 252-299 96-143 (225)
196 PF04849 HAP1_N: HAP1 N-termin 36.1 4.5E+02 0.0098 26.2 12.4 55 252-306 210-264 (306)
197 PF07106 TBPIP: Tat binding pr 36.0 2.3E+02 0.005 24.8 8.1 12 210-221 69-80 (169)
198 PF06785 UPF0242: Uncharacteri 36.0 5E+02 0.011 26.6 13.6 19 217-235 64-85 (401)
199 PF02174 IRS: PTB domain (IRS- 35.8 1.1E+02 0.0024 24.8 5.7 41 151-194 45-88 (100)
200 PRK10636 putative ABC transpor 35.8 3.7E+02 0.008 28.7 11.0 33 277-309 599-631 (638)
201 CHL00019 atpF ATP synthase CF0 35.7 3E+02 0.0066 24.5 8.9 34 234-267 62-95 (184)
202 PF09730 BicD: Microtubule-ass 35.4 4.7E+02 0.01 29.0 11.8 84 227-310 6-89 (717)
203 PF05266 DUF724: Protein of un 35.3 3.6E+02 0.0077 24.8 11.2 51 258-308 127-177 (190)
204 PF04012 PspA_IM30: PspA/IM30 35.3 3.4E+02 0.0074 24.5 13.1 50 250-299 93-142 (221)
205 COG1422 Predicted membrane pro 35.3 1.2E+02 0.0027 28.4 6.5 13 255-267 79-91 (201)
206 PRK14472 F0F1 ATP synthase sub 35.3 3.1E+02 0.0068 24.1 12.8 33 235-267 57-89 (175)
207 PRK07353 F0F1 ATP synthase sub 35.2 2.7E+02 0.0058 23.3 8.9 62 253-314 34-96 (140)
208 KOG0995|consensus 34.9 6.2E+02 0.014 27.5 14.3 150 136-291 136-302 (581)
209 PRK13455 F0F1 ATP synthase sub 34.8 3.3E+02 0.0071 24.2 13.0 33 235-267 66-98 (184)
210 PF11471 Sugarporin_N: Maltopo 34.6 88 0.0019 23.8 4.5 19 253-271 30-48 (60)
211 PRK06231 F0F1 ATP synthase sub 34.6 2.6E+02 0.0057 25.7 8.5 34 234-267 86-119 (205)
212 PRK10636 putative ABC transpor 34.6 3.4E+02 0.0073 29.0 10.4 59 245-303 567-632 (638)
213 CHL00118 atpG ATP synthase CF0 33.9 3.1E+02 0.0067 23.8 8.5 35 234-268 60-94 (156)
214 COG3883 Uncharacterized protei 33.9 4E+02 0.0086 26.1 9.9 54 250-303 40-93 (265)
215 PRK11281 hypothetical protein; 33.9 4.9E+02 0.011 30.3 12.1 41 251-291 124-164 (1113)
216 KOG0994|consensus 33.8 8.7E+02 0.019 29.2 13.6 13 300-312 1622-1634(1758)
217 PF05667 DUF812: Protein of un 33.7 2.7E+02 0.0058 30.1 9.5 28 259-286 353-380 (594)
218 PTZ00491 major vault protein; 33.3 2.4E+02 0.0051 31.9 9.1 19 222-240 674-692 (850)
219 PRK04406 hypothetical protein; 33.0 2.4E+02 0.0053 22.2 8.5 53 247-306 3-55 (75)
220 PRK14472 F0F1 ATP synthase sub 32.9 3.2E+02 0.0069 24.1 8.5 22 246-267 61-82 (175)
221 PF12999 PRKCSH-like: Glucosid 32.7 3E+02 0.0066 25.3 8.4 7 180-186 75-81 (176)
222 KOG0288|consensus 32.7 6.1E+02 0.013 26.7 13.6 48 249-296 49-96 (459)
223 KOG4673|consensus 32.6 5.1E+02 0.011 29.1 11.2 56 256-311 705-760 (961)
224 KOG0996|consensus 32.6 8.7E+02 0.019 28.8 13.5 15 194-208 320-334 (1293)
225 KOG3859|consensus 32.5 5.5E+02 0.012 26.1 12.8 27 250-276 343-369 (406)
226 PRK03947 prefoldin subunit alp 32.4 2.2E+02 0.0048 24.1 7.2 37 253-289 99-135 (140)
227 KOG4643|consensus 32.2 8.9E+02 0.019 28.4 14.0 81 190-278 371-452 (1195)
228 PF10226 DUF2216: Uncharacteri 32.1 2.3E+02 0.005 26.6 7.6 12 230-241 36-47 (195)
229 PF13851 GAS: Growth-arrest sp 32.1 4E+02 0.0088 24.4 9.3 40 256-295 49-88 (201)
230 PF15233 SYCE1: Synaptonemal c 31.9 3.7E+02 0.0079 23.9 8.8 50 250-299 8-57 (134)
231 PF00957 Synaptobrevin: Synapt 31.8 2.5E+02 0.0054 21.9 9.9 56 250-305 5-60 (89)
232 PRK07352 F0F1 ATP synthase sub 31.7 3.6E+02 0.0078 23.7 12.8 32 236-267 59-90 (174)
233 PF14257 DUF4349: Domain of un 31.7 3.4E+02 0.0074 25.3 9.0 19 179-197 97-115 (262)
234 TIGR03321 alt_F1F0_F0_B altern 31.5 3E+02 0.0065 25.7 8.5 26 245-270 47-72 (246)
235 KOG0993|consensus 31.4 5.1E+02 0.011 27.3 10.5 73 234-306 107-185 (542)
236 PF12329 TMF_DNA_bd: TATA elem 30.6 2.6E+02 0.0057 21.8 9.4 54 257-310 14-67 (74)
237 KOG4360|consensus 30.6 7.2E+02 0.016 26.9 13.1 50 265-314 257-306 (596)
238 PRK14474 F0F1 ATP synthase sub 30.4 3.2E+02 0.0069 25.9 8.5 20 246-265 48-67 (250)
239 PRK13455 F0F1 ATP synthase sub 29.9 3.7E+02 0.008 23.9 8.5 29 243-271 67-95 (184)
240 smart00787 Spc7 Spc7 kinetocho 29.9 5.5E+02 0.012 25.3 12.5 54 251-304 207-260 (312)
241 PF05278 PEARLI-4: Arabidopsis 29.8 5.5E+02 0.012 25.2 13.0 55 246-300 191-245 (269)
242 PRK13169 DNA replication intia 29.7 3.5E+02 0.0076 23.0 8.5 52 251-302 4-55 (110)
243 KOG0971|consensus 29.6 5.3E+02 0.012 29.9 11.0 11 182-192 205-215 (1243)
244 KOG3859|consensus 29.5 4.2E+02 0.009 26.9 9.3 60 242-301 342-402 (406)
245 PRK13428 F0F1 ATP synthase sub 29.5 6.4E+02 0.014 25.9 12.8 25 241-265 46-70 (445)
246 PRK14471 F0F1 ATP synthase sub 29.4 3.8E+02 0.0082 23.2 12.8 32 235-266 47-78 (164)
247 CHL00019 atpF ATP synthase CF0 29.3 4.1E+02 0.0089 23.6 12.8 7 179-185 19-25 (184)
248 PF05701 WEMBL: Weak chloropla 29.3 5.9E+02 0.013 26.7 11.0 58 250-307 367-424 (522)
249 cd00934 PTB Phosphotyrosine-bi 29.2 2.6E+02 0.0056 22.1 6.8 23 62-84 39-61 (123)
250 KOG0612|consensus 28.9 5.6E+02 0.012 30.4 11.3 36 276-311 700-735 (1317)
251 PRK13729 conjugal transfer pil 28.9 2.9E+02 0.0064 29.1 8.6 12 215-226 66-77 (475)
252 PRK13461 F0F1 ATP synthase sub 28.8 3.8E+02 0.0083 23.1 8.5 64 253-316 34-98 (159)
253 KOG2002|consensus 28.6 5.5E+02 0.012 29.7 11.0 32 118-149 623-658 (1018)
254 PF04156 IncA: IncA protein; 28.1 4.1E+02 0.009 23.3 14.6 48 256-303 124-171 (191)
255 PRK06975 bifunctional uroporph 28.0 4.6E+02 0.01 28.3 10.2 14 250-263 380-393 (656)
256 PRK07352 F0F1 ATP synthase sub 28.0 4.2E+02 0.009 23.3 8.9 23 246-268 62-84 (174)
257 PF03961 DUF342: Protein of un 27.8 4.7E+02 0.01 26.6 9.8 35 275-309 374-408 (451)
258 PF03962 Mnd1: Mnd1 family; I 27.7 4.6E+02 0.0099 23.9 8.8 11 198-208 50-60 (188)
259 PF08537 NBP1: Fungal Nap bind 27.4 1.8E+02 0.004 29.2 6.5 50 249-298 183-232 (323)
260 KOG0982|consensus 27.3 7.7E+02 0.017 26.1 11.8 37 232-268 279-317 (502)
261 PRK09510 tolA cell envelope in 27.2 7E+02 0.015 25.6 14.0 10 178-187 48-57 (387)
262 PRK13453 F0F1 ATP synthase sub 27.1 4.4E+02 0.0095 23.3 12.8 27 240-266 62-88 (173)
263 COG1730 GIM5 Predicted prefold 27.1 3.9E+02 0.0085 23.7 8.0 35 254-288 100-134 (145)
264 PF06115 DUF956: Domain of unk 26.7 1.2E+02 0.0025 26.4 4.4 44 151-199 46-96 (118)
265 COG2433 Uncharacterized conser 26.6 4.2E+02 0.0091 29.0 9.4 43 250-292 424-466 (652)
266 PRK13454 F0F1 ATP synthase sub 26.5 4.7E+02 0.01 23.4 10.2 71 244-314 72-144 (181)
267 PLN03188 kinesin-12 family pro 26.4 5.4E+02 0.012 30.6 10.6 8 195-202 1103-1110(1320)
268 KOG2264|consensus 26.1 4.8E+02 0.01 28.8 9.6 24 217-240 86-109 (907)
269 COG1422 Predicted membrane pro 26.0 3E+02 0.0064 26.0 7.3 18 255-272 101-118 (201)
270 KOG4005|consensus 25.9 6.4E+02 0.014 24.7 10.2 20 250-269 92-111 (292)
271 PF03961 DUF342: Protein of un 25.7 4.2E+02 0.0091 26.9 9.0 7 159-165 192-198 (451)
272 PF05529 Bap31: B-cell recepto 25.5 4.8E+02 0.01 23.2 9.3 16 274-289 173-188 (192)
273 KOG3535|consensus 25.4 4.1E+02 0.0088 28.1 8.7 22 61-82 88-109 (557)
274 PF05911 DUF869: Plant protein 25.4 1E+03 0.022 26.8 14.1 10 299-308 703-712 (769)
275 PRK10361 DNA recombination pro 25.4 8.3E+02 0.018 25.8 12.7 10 254-263 66-75 (475)
276 KOG0804|consensus 25.3 8.4E+02 0.018 25.9 11.8 78 230-307 348-434 (493)
277 KOG4046|consensus 25.3 91 0.002 29.7 3.8 17 17-33 106-122 (224)
278 COG1842 PspA Phage shock prote 25.2 5.8E+02 0.013 24.1 12.6 52 255-306 92-143 (225)
279 PF15254 CCDC14: Coiled-coil d 25.1 1E+03 0.023 27.0 12.3 71 222-293 455-525 (861)
280 KOG4005|consensus 25.0 6.6E+02 0.014 24.6 11.9 10 256-265 91-100 (292)
281 PF04880 NUDE_C: NUDE protein, 24.7 90 0.002 28.4 3.6 41 225-271 7-47 (166)
282 PRK06569 F0F1 ATP synthase sub 24.7 5.1E+02 0.011 23.2 8.7 24 241-264 55-78 (155)
283 PRK14475 F0F1 ATP synthase sub 24.6 4.8E+02 0.01 22.9 9.0 26 245-270 52-77 (167)
284 PRK11281 hypothetical protein; 24.6 4.1E+02 0.009 30.9 9.5 51 260-310 126-176 (1113)
285 PF00170 bZIP_1: bZIP transcri 24.6 2.9E+02 0.0063 20.3 8.9 23 249-271 27-49 (64)
286 PF13815 Dzip-like_N: Iguana/D 24.2 3.6E+02 0.0077 22.5 6.9 13 152-164 9-21 (118)
287 KOG0933|consensus 24.1 1.2E+03 0.026 27.3 13.8 48 257-304 824-871 (1174)
288 PF04201 TPD52: Tumour protein 24.0 2.5E+02 0.0053 25.6 6.2 38 247-284 28-65 (162)
289 cd00900 PH-like Pleckstrin hom 24.0 2.7E+02 0.0058 19.7 6.6 22 63-84 18-39 (99)
290 COG4281 ACB Acyl-CoA-binding p 23.9 77 0.0017 25.8 2.7 24 26-49 58-81 (87)
291 PRK15422 septal ring assembly 23.9 4E+02 0.0086 21.7 8.9 56 251-306 7-62 (79)
292 KOG2077|consensus 23.9 8.8E+02 0.019 26.8 11.0 25 250-274 352-376 (832)
293 cd01203 DOK_PTB Downstream of 23.8 2.3E+02 0.005 24.0 5.6 37 151-187 44-83 (104)
294 PRK10246 exonuclease subunit S 23.6 1.1E+03 0.024 26.9 12.6 20 217-236 188-207 (1047)
295 PF10174 Cast: RIM-binding pro 23.2 6.4E+02 0.014 28.2 10.3 57 251-307 544-600 (775)
296 KOG0982|consensus 23.1 9.2E+02 0.02 25.6 13.9 36 276-311 374-417 (502)
297 TIGR00998 8a0101 efflux pump m 23.0 6.4E+02 0.014 23.8 9.2 15 257-271 117-131 (334)
298 PF09738 DUF2051: Double stran 22.9 7.5E+02 0.016 24.5 11.7 74 220-293 86-164 (302)
299 PF11221 Med21: Subunit 21 of 22.8 3.1E+02 0.0068 23.7 6.5 22 254-275 103-124 (144)
300 PF11559 ADIP: Afadin- and alp 22.7 4.9E+02 0.011 22.2 10.7 9 187-195 30-38 (151)
301 PF14197 Cep57_CLD_2: Centroso 22.6 3.7E+02 0.0081 20.8 9.8 59 249-307 6-64 (69)
302 PF02841 GBP_C: Guanylate-bind 22.5 6.9E+02 0.015 23.9 12.2 15 253-267 234-248 (297)
303 PRK10803 tol-pal system protei 22.5 6.5E+02 0.014 23.9 9.1 24 251-274 57-80 (263)
304 KOG4403|consensus 22.4 8.5E+02 0.018 26.0 10.3 13 159-171 173-185 (575)
305 TIGR01005 eps_transp_fam exopo 22.4 6E+02 0.013 27.4 9.8 37 166-202 144-181 (754)
306 PF07227 DUF1423: Protein of u 22.2 7E+02 0.015 26.2 9.8 13 61-73 139-151 (446)
307 PF04012 PspA_IM30: PspA/IM30 22.1 5.9E+02 0.013 23.0 13.1 41 259-299 95-135 (221)
308 KOG0996|consensus 22.1 1.4E+03 0.03 27.3 13.5 60 250-310 836-898 (1293)
309 PLN02678 seryl-tRNA synthetase 22.0 7E+02 0.015 26.0 9.8 22 285-306 80-101 (448)
310 COG4913 Uncharacterized protei 21.8 1.2E+03 0.027 26.6 13.1 65 246-310 672-739 (1104)
311 PF15188 CCDC-167: Coiled-coil 21.7 2.5E+02 0.0054 22.9 5.3 58 249-310 6-63 (85)
312 smart00462 PTB Phosphotyrosine 21.6 3.9E+02 0.0084 21.6 6.6 24 61-84 40-63 (134)
313 KOG0250|consensus 21.3 1.4E+03 0.029 26.9 14.6 33 66-98 111-144 (1074)
314 COG3074 Uncharacterized protei 21.3 4.4E+02 0.0095 21.2 8.8 21 276-296 32-52 (79)
315 KOG2077|consensus 21.1 3.3E+02 0.0072 29.9 7.3 39 229-267 338-376 (832)
316 PRK06568 F0F1 ATP synthase sub 21.0 6E+02 0.013 22.7 13.0 33 234-266 42-74 (154)
317 KOG4403|consensus 21.0 5.8E+02 0.013 27.1 8.8 29 235-263 246-274 (575)
318 PF12126 DUF3583: Protein of u 21.0 8.6E+02 0.019 24.5 10.3 27 286-312 64-90 (324)
319 PF15437 PGBA_C: Plasminogen-b 21.0 4.7E+02 0.01 21.5 6.6 42 217-258 38-79 (86)
320 PF11471 Sugarporin_N: Maltopo 20.8 1.9E+02 0.0041 22.0 4.1 24 248-271 32-55 (60)
321 KOG0249|consensus 20.7 7.5E+02 0.016 28.0 9.9 32 245-276 153-184 (916)
322 PF02388 FemAB: FemAB family; 20.6 5.6E+02 0.012 25.8 8.7 45 15-65 2-46 (406)
323 TIGR03545 conserved hypothetic 20.5 7.4E+02 0.016 26.5 9.9 64 247-310 190-257 (555)
324 KOG0288|consensus 20.4 1E+03 0.022 25.1 11.4 18 247-264 54-71 (459)
No 1
>KOG3529|consensus
Probab=100.00 E-value=3.2e-47 Score=389.57 Aligned_cols=254 Identities=63% Similarity=0.993 Sum_probs=243.7
Q ss_pred CCCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeee
Q psy3983 1 MSVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYE 80 (318)
Q Consensus 1 ~~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~ 80 (318)
++++|.+|+++|+||..+|+.+|..||..|+|+++++|+++||+++++|++||++||.++|++|++.|||++..|++||.
T Consensus 159 ~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~~~re~a~leylki~qdle~ygvny~~i~~k~gt~~~lgv~~~gl~~y~ 238 (596)
T KOG3529|consen 159 DRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRGMTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGTDLWLGVDALGLNIYD 238 (596)
T ss_pred CcccchhhhhhccccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccccccccceeecCCCCCCccccccccCCccccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCccccc
Q psy3983 81 KEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRN 160 (318)
Q Consensus 81 ~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~ 160 (318)
..|+ +.|+.+|+|++|+|
T Consensus 239 ~~~k--------------------------------------------------------------~~P~~~f~w~eirn 256 (596)
T KOG3529|consen 239 ESDK--------------------------------------------------------------LTPKIGFPWSEIRN 256 (596)
T ss_pred cccC--------------------------------------------------------------CCCCCCCCccccCC
Confidence 9988 88999999999999
Q ss_pred cccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Q psy3983 161 ISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEI 240 (318)
Q Consensus 161 lsf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d~~~vqqmkaqa~eek~~~~~er~~l~~e~ 240 (318)
|||++++|.|+|+|+++++|+|+.++.+.++.|+++|.+||++||+||+|||++||||++||+++|++++++|.++..++
T Consensus 257 isf~~kkf~~k~id~~~~~f~~~~~~~~~~~~~l~~~~~~~~l~~rr~~~~ti~vqq~~~~a~~~k~~~~~e~~~~~~~~ 336 (596)
T KOG3529|consen 257 ISFNDKKFHIKPIDKKASDFSFYAPRLRINKRILDLCMGNHELYMRRRKPDTIEVQQMKAQAREEKARKQLERAKLEREK 336 (596)
T ss_pred CCCCcccccCCCCCcccCcccccccccccchhhhhhhhccchhhhhcccccccchhhccccccchHHHHHHhhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy3983 241 AAREKAEKKHQ-------ESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQS 313 (318)
Q Consensus 241 ~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (318)
..|+.++++.. ++..++.+.++.+.+..+++.++.+++..++++.+.++.++..|++....+++..+.+..+.
T Consensus 337 ~~re~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~E~~~~~l~~~a~~le~e~~rL~e~~~~le~e~ 416 (596)
T KOG3529|consen 337 KKRETGEKEGSELERLKEELQGRMAQAQEDVERARRELAEASRKARDLEEERKLLKKEASELEAERPRLEELKQKLEEEK 416 (596)
T ss_pred hhhhhcccccCcccccchhhhhhhhhhhHHHHHhhhcchhhcccccCccchhhhhhhhHhhhhhhhhHHHHHHHHHHHHh
Confidence 99999998854 78889999999999999999999999999999999999999999999999998888877665
Q ss_pred ccc
Q psy3983 314 NLN 316 (318)
Q Consensus 314 ~~~ 316 (318)
.+.
T Consensus 417 ~d~ 419 (596)
T KOG3529|consen 417 HDS 419 (596)
T ss_pred hcc
Confidence 543
No 2
>KOG3530|consensus
Probab=99.98 E-value=4.9e-33 Score=281.33 Aligned_cols=164 Identities=24% Similarity=0.415 Sum_probs=141.9
Q ss_pred HHHHccCCCHHHHHHHHHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEE
Q psy3983 26 WWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKF 103 (318)
Q Consensus 26 ~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f 103 (318)
+.+.++|+...|- ||..|++.+.||||| .|..++..||+++++ |+.+++-++|+.|+|
T Consensus 27 ~pk~akGq~Lld~------V~~~ldl~E~DYFGLry~D~~~~~hWLD~tK~--------------I~kqvK~gppytL~~ 86 (616)
T KOG3530|consen 27 FPKTAKGQELLDY------VFYHLDLIEKDYFGLRYQDSSKVRHWLDPTKS--------------IKKQVKIGPPYTLHL 86 (616)
T ss_pred cCcccchHHHHHH------HHHhhceeeeeccceeeechhhcceecCcchh--------------HHHHhccCCCeEEEE
Confidence 5667888888544 466667888899999 899999999999984 334578899999999
Q ss_pred EEeecCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCcccccc----------------------------------
Q psy3983 104 RAKFYPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLT---------------------------------- 148 (318)
Q Consensus 104 ~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~---------------------------------- 148 (318)
||||||+||+. |.+|+|||+||||||+||++ ||+||.+.|+.|+
T Consensus 87 rVKfY~sdP~~-Lree~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDYn~~~Ht~~yVSefRf~p~Qte~L 165 (616)
T KOG3530|consen 87 RVKFYPSDPNN-LREENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELGDYNEEEHTGGYVSEFRFLPNQTEEL 165 (616)
T ss_pred EEEeccCChhh-hhchhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCCChhhccccceeeeEecccccHHH
Confidence 99999999995 99999999999999999999 9999999999988
Q ss_pred --------------------------------------cc--------------------------cCccCccccccccc
Q psy3983 149 --------------------------------------PK--------------------------IGFPWSEIRNISFN 164 (318)
Q Consensus 149 --------------------------------------p~--------------------------~~f~W~~I~~lsf~ 164 (318)
|+ ..|.|++|.+|.|+
T Consensus 166 E~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGIlvf~g~~kig~f~WpkI~KvdFk 245 (616)
T KOG3530|consen 166 EERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGILVFEGKKKIGLFFWPKITKVDFK 245 (616)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceEEEEECCceeeEEecchheEeecc
Confidence 00 02679999999999
Q ss_pred cceEEEEeCCCC------CCceEEEcCCccchHHHHHHhhhcccccccccCC
Q psy3983 165 DRKFIIKPIDKK------APDFVFFAPRVRVNKRILALCMGNHELYMRRRKP 210 (318)
Q Consensus 165 ~kkF~Ikp~dkk------~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~ 210 (318)
+++|++.+.++. .++|+|.++++.+||+||+|||++|.||+.+..+
T Consensus 246 ~kk~~L~v~edd~~~~~q~hTf~F~~~~~~AcKhLWKCavEhhaFFRl~~p~ 297 (616)
T KOG3530|consen 246 GKKFTLVVSEDDDQGREQEHTFVFRLPSPKACKHLWKCAVEHHAFFRLRCPV 297 (616)
T ss_pred CcEEEEEEeeccccCCcccceEEEeCCCcchhHHHHHHhhhccceEeccCCc
Confidence 999999985432 2699999999999999999999999999887653
No 3
>KOG3527|consensus
Probab=99.92 E-value=7e-26 Score=236.56 Aligned_cols=195 Identities=24% Similarity=0.401 Sum_probs=161.8
Q ss_pred HHccCCCHHHHHHHHHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEE
Q psy3983 28 KEHKGMLREDAMMEYLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRA 105 (318)
Q Consensus 28 k~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~v 105 (318)
+..+|..+. -++|..|++++.||||| .++.....||++.+. +-+| -+..||+|-|.|
T Consensus 50 k~~kg~~~~------~~vc~~LnliEkdyfgl~~~~~~~~~~wlD~~k~-------------i~k~--vr~~~w~f~f~v 108 (975)
T KOG3527|consen 50 KHAKGQVLF------DKVCEHLNLLEKDYFGLTYLTSSEQKNWLDPAKE-------------IKKQ--VRSFPWNFTFNV 108 (975)
T ss_pred cccccchhH------HHHhhccchhhhhhceeEEecCCCCccccccchh-------------hhcc--cccCccceeEee
Confidence 345777764 56777778999999999 788899999999984 1111 135689999999
Q ss_pred eecCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCcccccc------------------------------------
Q psy3983 106 KFYPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLT------------------------------------ 148 (318)
Q Consensus 106 kfyp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~------------------------------------ 148 (318)
|||||||+ +|.++||||++|||+|.||++ ||+|++...++|.
T Consensus 109 KfyPp~Ps-ql~EditrY~lcLq~R~Dil~GrlPcsfvt~allgsy~vq~E~gdYd~ee~~~~y~~df~~aPnqt~eled 187 (975)
T KOG3527|consen 109 KFYPPDPS-QLTEDITRYYLCLQLRQDILSGRLPCSFVTHALLGSYTVQSELGDYDPEEHGSDYLSDFKFAPNQTKELED 187 (975)
T ss_pred eeCCCChH-hccccchhheehhhhhhhhhcCccccchhhhhhhhhHhHHhHhccCCHHHcccchhhhhccCcchhhhHHH
Confidence 99999996 699999999999999999999 9999999998887
Q ss_pred --------------------------------------------------------------cccCccCccccccccccc
Q psy3983 149 --------------------------------------------------------------PKIGFPWSEIRNISFNDR 166 (318)
Q Consensus 149 --------------------------------------------------------------p~~~f~W~~I~~lsf~~k 166 (318)
-...|.|+.|-+|||.+.
T Consensus 188 kv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKdsegvdi~lgvca~glliy~d~lrinrfawPKilKisykR~ 267 (975)
T KOG3527|consen 188 KVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGVDIMLGVCASGLLIYRDRLRINRFAWPKILKISYKRS 267 (975)
T ss_pred HHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccccccceeeecccccceEEeechhhhccccCchhhhhcccee
Confidence 011489999999999999
Q ss_pred eEEEEeCCCC----CCceEEEcCCccchHHHHHHhhhcccccccccCCCcHHHHHH-----------HHHHHHHHHHHHH
Q psy3983 167 KFIIKPIDKK----APDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQM-----------KAQAREEKNAKQQ 231 (318)
Q Consensus 167 kF~Ikp~dkk----~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d~~~vqqm-----------kaqa~eek~~~~~ 231 (318)
.|.|+...+. ..+++|+.|+.++||+||+.||+||+||++ -.|+.+.--+. +.||...+++--+
T Consensus 268 ~FyiKirPge~eq~EstigFklpnhraakrlwk~cvEHhtffrl-~~Pe~~pk~~f~~~gs~~rysgrtqa~trqAsali 346 (975)
T KOG3527|consen 268 NFYIKIRPGEFEQFESTIGFKLPNHRAAKRLWKVCVEHHTFFRL-VSPEPPPKSKFLVLGSKFRYSGRTQAQTRQASALI 346 (975)
T ss_pred eeEEEecCCccccccccccccccchhhHHhhhHhhhhccceeee-ccCCCCccccccccccceeecccchhhhhhhcccc
Confidence 9999986543 368999999999999999999999999975 45666655322 6799999999999
Q ss_pred hhHhHHHHHHHHHH
Q psy3983 232 QRDKLQLEIAAREK 245 (318)
Q Consensus 232 er~~l~~e~~~~~~ 245 (318)
+|...-.|+.....
T Consensus 347 DRpaP~FERSsSkr 360 (975)
T KOG3527|consen 347 DRPAPFFERSSSKR 360 (975)
T ss_pred cCCccccccccccc
Confidence 99999888876544
No 4
>KOG0792|consensus
Probab=99.90 E-value=9e-25 Score=231.94 Aligned_cols=151 Identities=28% Similarity=0.504 Sum_probs=130.5
Q ss_pred HHhccCcccceeEEe---ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHH
Q psy3983 45 IAQDLEMYGVNYFEI---KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDIT 121 (318)
Q Consensus 45 vaq~Le~yGv~YFgL---~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~T 121 (318)
+|++|+.-+++|||+ .|+.+...||++.|+ +.+|.++..+|..+.|+|+||+++|.. |.+|+|
T Consensus 52 V~qrL~~~e~~yFgl~~~~~k~~~~rWvdleK~-------------lkkql~k~a~~p~l~frV~fyV~~p~~-LqeE~T 117 (1144)
T KOG0792|consen 52 VAQRLELREKEYFGLLWSPDKPDQIRWVDLEKP-------------LKKQLIKVANPPLLHFRVKFYVPDPSG-LQEEAT 117 (1144)
T ss_pred HhhhhcccccccccccccCCccCccceeccchh-------------HHHhhhccCCCceEEEEEEEEecChhH-HHHHHH
Confidence 677778889999995 777888999999984 455656666788999999999999986 999999
Q ss_pred HHHHHHHhhhhhhc-CCCCCCCcccccc--------------------------c-------------------------
Q psy3983 122 LRLFYLQVSRSAGS-RVRFPPGPNCLLT--------------------------P------------------------- 149 (318)
Q Consensus 122 Rylf~LQlK~di~~-rl~C~~~~a~lL~--------------------------p------------------------- 149 (318)
||+||||||+||+. ||.|+.++|++|+ |
T Consensus 118 RyqyylQvK~di~eGrl~Ct~~qailLA~yavQae~gdy~~~~s~~~l~~~~~~p~~~~~~~n~~~e~~~kVa~lhQ~h~ 197 (1144)
T KOG0792|consen 118 RYQYYLQVKKDILEGRLPCTLNQAILLASYAVQAEFGDYNQKQSQDGLEYLSVFPQCTLQDENVLEEFEQKVAELHQQHR 197 (1144)
T ss_pred HHHHHHHHHHHHhccccCCchHHHHHHHHhhhhhhhcchhhhcCCccchhccccccccccchhhHHHHHHHHHHHHHHhc
Confidence 99999999999999 9999999999998 0
Q ss_pred ------------------------------------------------------ccCccCccccccccccceEEEEeCCC
Q psy3983 150 ------------------------------------------------------KIGFPWSEIRNISFNDRKFIIKPIDK 175 (318)
Q Consensus 150 ------------------------------------------------------~~~f~W~~I~~lsf~~kkF~Ikp~dk 175 (318)
...|+|.+|.+++|+++.|.|....+
T Consensus 198 G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g~~i~lGi~~~Gi~V~~~~g~~~~~~~W~di~~is~~ks~~~le~~~~ 277 (1144)
T KOG0792|consen 198 GLLPAEAETNYINEAKRLEGYGEEFHRAKDLHGNDINLGIARVGILVPGQNGRQSVKFPWGDIIKISFKKSTFGLEQRNK 277 (1144)
T ss_pred ccCccHHHHHHHHHHHhhccccceecccccCCCcceeeeeeeceeEeeccCccccceechhhhhhhhcchhhhhhhhhhc
Confidence 01379999999999999999988544
Q ss_pred C----CCceEEEcCCccchHHHHHHhhhcccccccccC
Q psy3983 176 K----APDFVFFAPRVRVNKRILALCMGNHELYMRRRK 209 (318)
Q Consensus 176 k----~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~ 209 (318)
. .....|++.+.+.||+||++||.+|.||++.+.
T Consensus 278 ~~~~r~t~~~F~~~~~~~ak~lwk~cv~~H~Ffr~~~~ 315 (1144)
T KOG0792|consen 278 DSESRETLLGFNMLDARTAKYLWKLCVEHHKFFRLKKP 315 (1144)
T ss_pred cccchhhhheeeecccchhHHHHHHHHHHhhHhhcccc
Confidence 3 235689999999999999999999999987654
No 5
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=99.90 E-value=3.6e-24 Score=170.43 Aligned_cols=90 Identities=42% Similarity=0.756 Sum_probs=83.4
Q ss_pred cccceeEEeecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhh
Q psy3983 51 MYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVS 130 (318)
Q Consensus 51 ~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK 130 (318)
+||++||.++|++|+++|||+++.||.||+.++.
T Consensus 1 ~YGv~~~~vkd~~g~~~~lGV~~~Gi~v~~~~~~---------------------------------------------- 34 (92)
T cd00836 1 MYGVDLHPVKDKKGTELLLGVTAEGILVYDDGTP---------------------------------------------- 34 (92)
T ss_pred CCCeeeEEEECCCCCeEEEEEeCCCcEEecCCCE----------------------------------------------
Confidence 6999999999999999999999999999986543
Q ss_pred hhhhcCCCCCCCcccccccccCccCccccccccccceEEEEeCCC--CCCceEEEcCCccchHHHHHHhhhcccccc
Q psy3983 131 RSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDK--KAPDFVFFAPRVRVNKRILALCMGNHELYM 205 (318)
Q Consensus 131 ~di~~rl~C~~~~a~lL~p~~~f~W~~I~~lsf~~kkF~Ikp~dk--k~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~ 205 (318)
...|+|++|.+|+|++|+|+|++.+. ...++.|++++++.||+||++|+++|.||+
T Consensus 35 -------------------~~~f~W~~I~~isf~~k~F~i~~~~~~~~~~~~~f~~~s~~~~k~lwk~~ve~H~Ffr 92 (92)
T cd00836 35 -------------------INEFPWPEIRKISFKRKKFTLKVRDKDGQEITLSFQTPSHRACKYLWKLCVEQHAFFR 92 (92)
T ss_pred -------------------EEEEEcccceEEEEcCCEEEEEEecCcCceeeEEEECCCHHHHHHHHHHHHhhhhhcC
Confidence 46899999999999999999999877 457899999999999999999999999996
No 6
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=99.85 E-value=6e-22 Score=156.42 Aligned_cols=89 Identities=36% Similarity=0.781 Sum_probs=78.7
Q ss_pred cCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCC
Q psy3983 61 NKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFP 140 (318)
Q Consensus 61 d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~ 140 (318)
|++|.++|||++..||.||..+++
T Consensus 1 D~~~~~~~LGv~~~GI~i~~~~~~-------------------------------------------------------- 24 (90)
T PF09380_consen 1 DKNGSPLWLGVSPRGISIYRDNNR-------------------------------------------------------- 24 (90)
T ss_dssp ETTSBEEEEEEESSEEEEEETTBS--------------------------------------------------------
T ss_pred CCCCCEEEEEEcCCEeEEEeCCCc--------------------------------------------------------
Confidence 678999999999999999987776
Q ss_pred CCcccccccccCccCccccccccccceEEEEeCC-CCCCceEEEcCCccchHHHHHHhhhcccccccccCCCc
Q psy3983 141 PGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPID-KKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDT 212 (318)
Q Consensus 141 ~~~a~lL~p~~~f~W~~I~~lsf~~kkF~Ikp~d-kk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d~ 212 (318)
+. ...|+|++|.+|+|++++|+|.+.+ ....+++|++++++.||+||++||++|.||++++.++|
T Consensus 25 ------~~-~~~f~W~~I~~l~~~~k~F~I~~~~~~~~~~~~f~~~~~~~aK~lw~~cv~~H~Ff~~~~~~~~ 90 (90)
T PF09380_consen 25 ------IS-TQFFPWSEISKLSFKKKKFTIEVRDESKEIKLKFYTPSPKAAKYLWKLCVEQHTFFRLRRPPKS 90 (90)
T ss_dssp ------SS-SEEEEGGGEEEEEEETTEEEEEESSTSSSEEEEEE-SSHHHHHHHHHHHHHHHHHHHHHTS-EE
T ss_pred ------cc-ceeeehhheeEEEecccEEEEEEeecccceEEEEEECCHHHHHHHHHHHHHHHHHhcccCCCCC
Confidence 32 3689999999999999999999987 55678999999999999999999999999999998765
No 7
>KOG3531|consensus
Probab=99.72 E-value=8.3e-19 Score=183.41 Aligned_cols=155 Identities=22% Similarity=0.523 Sum_probs=130.6
Q ss_pred HHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHh
Q psy3983 42 YLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQD 119 (318)
Q Consensus 42 fLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe 119 (318)
+-.||.+|++.+.||||+ .|.++..+||++.|+ |+. +|.....+.++|.|||||||+. .+.+|
T Consensus 66 l~~vc~~lnl~e~dyfglef~~~~~~~~wld~~kp-------------i~r-qi~~~~~~~~~~~vkf~~p~~~-~l~ee 130 (1036)
T KOG3531|consen 66 LDQVCRHLNLVECDYFGLEFQDINGNHCWLDLEKP-------------ILR-QIRRPKDVVLRFVVKFFPPDPI-QLQEE 130 (1036)
T ss_pred HHHHHHhhceeeccccceeeccccCceEEecccch-------------HHH-HhcCccchhhheeecccCCCcc-ccchh
Confidence 345677778888999999 788889999999985 333 3556666889999999999998 49999
Q ss_pred HHHHHHHHHhhhhhhc-CCCCCCCccccccc-------------------------------------------------
Q psy3983 120 ITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP------------------------------------------------- 149 (318)
Q Consensus 120 ~TRylf~LQlK~di~~-rl~C~~~~a~lL~p------------------------------------------------- 149 (318)
.|||+|.||+|+|+.- ++.|+..+|++|+.
T Consensus 131 ~trylf~~q~k~dl~~G~l~c~d~ta~lLss~~~qse~gdf~~~~d~~~l~~~~~~p~q~~~~~ki~~~h~~hig~tpae 210 (1036)
T KOG3531|consen 131 YTRYLFALQIKRDLALGRLTCNDTTAALLSSHIVQSEIGDFDEYLDREHLAHTRYLPNQDELEKKIMEFHQKHIGQTPAE 210 (1036)
T ss_pred HHHHhhhhccccccccCCccCCCchhhhhhcccccccCCchhccccceeeeeeecCchHHHHHHHHHHhhhhhhccCchh
Confidence 9999999999999999 89999999999870
Q ss_pred -----------------------------------------------ccCccCccccccccccceEEEEeCCCC----CC
Q psy3983 150 -----------------------------------------------KIGFPWSEIRNISFNDRKFIIKPIDKK----AP 178 (318)
Q Consensus 150 -----------------------------------------------~~~f~W~~I~~lsf~~kkF~Ikp~dkk----~~ 178 (318)
.+.|.|..|+++||+.++|.|+..+.. ..
T Consensus 211 sdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav~hmgi~Vfr~~tkinTf~wAkirklsfkrk~fLiklhp~~~g~~qd 290 (1036)
T KOG3531|consen 211 SDFQLLEIARRLDMYGIRLHPAKDREGTKINLAVAHMGILVFRGLTKINTFNWAKIRKLSFKRKRFLIKLHPDSYGYYKD 290 (1036)
T ss_pred hhHHHHHHHHHHhhhccccchhhhcccchHHHHHHhhhhHHHhcceeccCCCHHHHHHHHHHHHhhhheeccccccchhh
Confidence 114789999999999999999987643 25
Q ss_pred ceEEEcCCccchHHHHHHhhhcccccccccCCC
Q psy3983 179 DFVFFAPRVRVNKRILALCMGNHELYMRRRKPD 211 (318)
Q Consensus 179 ~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d 211 (318)
++.|.+.+...||..|+-||++|.||++--.+.
T Consensus 291 t~ef~~~~rd~ck~fwk~cve~h~ffr~~~~~~ 323 (1036)
T KOG3531|consen 291 TLEFLMASRDECKNFWKICVEHHAFFRLVEEPK 323 (1036)
T ss_pred hHHHHHHhHHHHHHHHhccccccchhhhhcccC
Confidence 778888888899999999999999998765443
No 8
>KOG3529|consensus
Probab=99.53 E-value=3.9e-15 Score=153.90 Aligned_cols=110 Identities=40% Similarity=0.662 Sum_probs=95.2
Q ss_pred HHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHh
Q psy3983 42 YLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQD 119 (318)
Q Consensus 42 fLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe 119 (318)
|.-||+.+++-+++|||| .|.+|.+.||.+++ .|+.|++++.+|++|.|+|||||+++.++++++
T Consensus 39 ~dlv~~~~glre~~yfgl~~~d~~~~~~wl~~d~-------------~v~~~d~~k~~~~~~~f~akfy~E~v~eeli~~ 105 (596)
T KOG3529|consen 39 FDLVVKTIGLRESWYFGLQYTDSKGEPTWLKLDK-------------KVLDQDVPKDSPLNFHFHAKFYPEDVAEELIQD 105 (596)
T ss_pred HHHHhccCCCchhhhcccccccCCCCcchhhccc-------------hhhhhhcCCCCCcceeeeeecchHHHHHHHHHH
Confidence 455888899999999999 89999999999998 378889999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhc-CCCCCCCccccccc-----ccCccCccccccccc
Q psy3983 120 ITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP-----KIGFPWSEIRNISFN 164 (318)
Q Consensus 120 ~TRylf~LQlK~di~~-rl~C~~~~a~lL~p-----~~~f~W~~I~~lsf~ 164 (318)
+|.+|||||+|..|++ .++|++++.++|+. .+|.+-.+...+++.
T Consensus 106 ~t~~Lffl~vk~~il~~~i~~~~E~~~~las~~vqa~~gdy~~~~~~~~~l 156 (596)
T KOG3529|consen 106 ITQHLFFLQVKEAILSDEIYCPPETSVLLASYAVQAKYGDYDKETHKVGRL 156 (596)
T ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhccccchhhhhhcc
Confidence 9999999999999999 89999999999983 345533344444443
No 9
>KOG3530|consensus
Probab=99.04 E-value=3.3e-10 Score=116.36 Aligned_cols=69 Identities=33% Similarity=0.566 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeecCCc
Q psy3983 16 PSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDN 84 (318)
Q Consensus 16 ~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk 84 (318)
.+.+|.+|.+.||+.+|++|+.||++||+.|+.|||||+|.|.|++.+|....||+++.||.||+...+
T Consensus 162 te~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGIlvf~g~~k 230 (616)
T KOG3530|consen 162 TEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGILVFEGKKK 230 (616)
T ss_pred cHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceEEEEECCce
Confidence 468999999999999999999999999999999999999999999999999999999999999997655
No 10
>KOG3527|consensus
Probab=98.73 E-value=1.8e-08 Score=107.26 Aligned_cols=79 Identities=33% Similarity=0.580 Sum_probs=72.5
Q ss_pred CchhhHhhcCCChH---HHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeee
Q psy3983 4 SPLRVMDQHKMSPS---EWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYE 80 (318)
Q Consensus 4 ~p~~~~~q~~~~~~---~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~ 80 (318)
.|..++..|+..|+ +++++|+.||+.|+||+|++|++.||..|++|.|||+|.+..+|+.|+++-||++++|+.||.
T Consensus 167 ~~~~y~~df~~aPnqt~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKdsegvdi~lgvca~glliy~ 246 (975)
T KOG3527|consen 167 HGSDYLSDFKFAPNQTKELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGVDIMLGVCASGLLIYR 246 (975)
T ss_pred cccchhhhhccCcchhhhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccccccceeeecccccceEEee
Confidence 34567777887776 799999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q psy3983 81 KE 82 (318)
Q Consensus 81 ~~ 82 (318)
..
T Consensus 247 d~ 248 (975)
T KOG3527|consen 247 DR 248 (975)
T ss_pred ch
Confidence 53
No 11
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=98.68 E-value=9.8e-08 Score=89.51 Aligned_cols=73 Identities=38% Similarity=0.550 Sum_probs=66.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcccc
Q psy3983 244 EKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLN 316 (318)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (318)
+.||+++.+|+.||.++++++++++.+|.+++++|..|+++++++++++..|++++.++++++++|+.++++.
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~ 73 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQ 73 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999999988765
No 12
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=98.49 E-value=3.3e-07 Score=80.00 Aligned_cols=95 Identities=31% Similarity=0.510 Sum_probs=72.6
Q ss_pred HHHHHHHhccCcccceeEEe--ecCCCCe-EEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHH
Q psy3983 40 MEYLKIAQDLEMYGVNYFEI--KNKKGTE-LWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEI 116 (318)
Q Consensus 40 ~efLkvaq~Le~yGv~YFgL--~d~kg~~-~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL 116 (318)
--+-.+|+++++-..+|||| .+..+.. .||..... +.++..+ ..++.|.|+++||++++. .+
T Consensus 28 ev~~~v~~~~~l~~~~~F~L~~~~~~~~~~~~l~~~~~-------------l~~~~~~-~~~~~l~fr~r~~~~~~~-~~ 92 (207)
T smart00295 28 ELLETVCRKLGIRESEYFGLQFEDPDEDLSHWLDPAKT-------------LLDQDVK-SEPLTLYFRVKFYPPDPL-QL 92 (207)
T ss_pred HHHHHHHHHhCCCccceeEEEEEcCCCCcCeeCCCccC-------------HHHhcCC-CCCcEEEEEEEEccCCHH-Hh
Confidence 33445788888888999999 5544444 89986652 3333211 156899999999999874 46
Q ss_pred HHhHHHH-HHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983 117 IQDITLR-LFYLQVSRSAGS-RVRFPPGPNCLLTP 149 (318)
Q Consensus 117 ~qe~TRy-lf~LQlK~di~~-rl~C~~~~a~lL~p 149 (318)
.++.+++ ++|+|++.|+++ +++|+.+.++.|+.
T Consensus 93 ~~d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~Laa 127 (207)
T smart00295 93 KEDPTRLNLLYLQVRNDILEGRLPCPEEEALLLAA 127 (207)
T ss_pred cchhHHHHHHHHHHHHHHHcCccCCCHHHHHHHHH
Confidence 7788888 999999999999 89999999999984
No 13
>KOG4371|consensus
Probab=98.48 E-value=7.1e-08 Score=104.30 Aligned_cols=144 Identities=18% Similarity=0.357 Sum_probs=120.2
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEe-ecC----------CCCeEEEe
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEI-KNK----------KGTELWLG 70 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL-~d~----------kg~~~WLg 70 (318)
.|+|.+|...-+ .+.+...+..+|+-.-|.+..+|.+.|+++|+..+.||.+|+.+ .++ .+.+.|+|
T Consensus 665 hY~ps~yss~e~--q~li~~~~p~~Hg~~~~t~aseah~kYV~~p~r~pd~e~h~qp~f~~kP~sar~~kt~~~~pp~~g 742 (1332)
T KOG4371|consen 665 HYLPSKYSSFED--QSLIKNILPELHGHYAGTRASEAHHKYVQIPQRHPDFEAHVQPVFRTKPTSARPFKTDTGSPPWIG 742 (1332)
T ss_pred hhcccceecccc--hhhhhhccccccCchhhcchhhccCcceecccCCCCccceeccccCCCCcccCcCcCCCCCCcccc
Confidence 367777766544 56788889999999999999999999999999999999999999 333 24589999
Q ss_pred ecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccc
Q psy3983 71 VDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPK 150 (318)
Q Consensus 71 l~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~ 150 (318)
+..+||.||...+..+ .+ .
T Consensus 743 p~prgIsi~~p~~~a~-----------------------------------------------------------~~--~ 761 (1332)
T KOG4371|consen 743 PMPRGISIYEPQGGAR-----------------------------------------------------------EV--I 761 (1332)
T ss_pred ccccceeccccCCCCc-----------------------------------------------------------cc--c
Confidence 9999999998654410 01 2
Q ss_pred cCccCccccccccccceEEEEeCCCC-CCceEEEcCCccchHHHHHHhhhccccccccc
Q psy3983 151 IGFPWSEIRNISFNDRKFIIKPIDKK-APDFVFFAPRVRVNKRILALCMGNHELYMRRR 208 (318)
Q Consensus 151 ~~f~W~~I~~lsf~~kkF~Ikp~dkk-~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr 208 (318)
..|||..|..+.|.+++|.|-+.+-. ....+|++..+.-+.+.+++...+|.|||.++
T Consensus 762 a~fPpa~v~~lqFd~k~f~Is~~g~p~~~i~~~yt~hh~~S~~~L~~~~~thR~ym~~~ 820 (1332)
T KOG4371|consen 762 AEFPPAQVQTLQFDKKRFVISAVGAPDEQIETFYTDHHSKSSYFLRFAASTHRWYMKMR 820 (1332)
T ss_pred CCCCCCCCCceeecCCCceeecCCCCCcceEEeeccCCcchhHHHHHHHHhhHHHhhch
Confidence 58999999999999999999885432 34579999999999999999999999999876
No 14
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=98.38 E-value=6.9e-07 Score=68.40 Aligned_cols=55 Identities=31% Similarity=0.620 Sum_probs=42.3
Q ss_pred HHHHHhccCcccceeEEe-e--cCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecC
Q psy3983 42 YLKIAQDLEMYGVNYFEI-K--NKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYP 109 (318)
Q Consensus 42 fLkvaq~Le~yGv~YFgL-~--d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp 109 (318)
+-.||.+|++-..+|||| . ++++...||+++++ +.+|.....+|+.+.|+|||||
T Consensus 23 ~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~-------------l~~q~~~~~~~~~l~frvkfy~ 80 (80)
T PF09379_consen 23 LEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKK-------------LKKQLKKNNPPFTLYFRVKFYP 80 (80)
T ss_dssp HHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSB-------------GGGSTBTSSSSEEEEEEESS--
T ss_pred HHHHHHHcCCCCccEEEEEEeecCCCcceeccCccc-------------HHHHcCCCCCCEEEEEEEEECC
Confidence 445888899999999999 5 78899999999984 4445433478999999999998
No 15
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=98.26 E-value=2e-06 Score=69.91 Aligned_cols=53 Identities=34% Similarity=0.688 Sum_probs=46.4
Q ss_pred CCc--hhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeE
Q psy3983 3 VSP--LRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYF 57 (318)
Q Consensus 3 ~~p--~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YF 57 (318)
++| ..++.. ++.+.|..+|...|++..|+++.+|...||++|+++++||+.||
T Consensus 72 ~iP~~~~~~~~--~~~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 72 FIPKAPKLIKK--MKQKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp TSSHHHHHHCC--STHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred hhhhhHHHHhh--hhHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 688 666664 56889999999999999999999999999999999999999998
No 16
>KOG3531|consensus
Probab=98.11 E-value=9e-07 Score=94.41 Aligned_cols=110 Identities=21% Similarity=0.257 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeecCCcccccccccccc
Q psy3983 16 PSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKK 95 (318)
Q Consensus 16 ~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~ 95 (318)
...++.+|+..|..|.|+++.++.++-|.+|.++++||++.+..+|-.|..+-|.+...||.|
T Consensus 189 q~~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~~~~lav~hmgi~V----------------- 251 (1036)
T KOG3531|consen 189 QDELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGTKINLAVAHMGILV----------------- 251 (1036)
T ss_pred HHHHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccchHHHHHHhhhhHH-----------------
Confidence 346889999999999999999999999999999999999998877777777666666555554
Q ss_pred CCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCcccccc
Q psy3983 96 ENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLT 148 (318)
Q Consensus 96 ~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~ 148 (318)
|+|+.|||.+++.. +..+.++|++||+.+++... -+-|+.+.+.+..
T Consensus 252 -----fr~~tkinTf~wAk-irklsfkrk~fLiklhp~~~g~~qdt~ef~~~~r 299 (1036)
T KOG3531|consen 252 -----FRGLTKINTFNWAK-IRKLSFKRKRFLIKLHPDSYGYYKDTLEFLMASR 299 (1036)
T ss_pred -----HhcceeccCCCHHH-HHHHHHHHHhhhheeccccccchhhhHHHHHHhH
Confidence 56889999999875 99999999999999998777 6889988876654
No 17
>KOG0792|consensus
Probab=98.07 E-value=5.1e-06 Score=90.59 Aligned_cols=68 Identities=25% Similarity=0.547 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeecCCc
Q psy3983 17 SEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDN 84 (318)
Q Consensus 17 ~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk 84 (318)
++++++|..+|+.|.|+.+.+|++.||+.|++|+.||.++|..+|..|.++-||+..-||.||.++.+
T Consensus 183 ~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g~~i~lGi~~~Gi~V~~~~g~ 250 (1144)
T KOG0792|consen 183 EEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFHRAKDLHGNDINLGIARVGILVPGQNGR 250 (1144)
T ss_pred HHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceecccccCCCcceeeeeeeceeEeeccCcc
Confidence 48999999999999999999999999999999999999999999999999999999999999985554
No 18
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=96.52 E-value=0.00093 Score=54.19 Aligned_cols=34 Identities=29% Similarity=0.309 Sum_probs=31.0
Q ss_pred HHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983 116 IIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP 149 (318)
Q Consensus 116 L~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p 149 (318)
+.+++|++++|+|+|.|+++ +++|+.+.|+.|++
T Consensus 5 ~~d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAA 39 (126)
T PF00373_consen 5 IDDPITRHLLYLQARRDVLQGRLPCSEEDAIKLAA 39 (126)
T ss_dssp TTSHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHH
Confidence 77899999999999999999 89999999999984
No 19
>KOG0248|consensus
Probab=95.16 E-value=0.025 Score=60.50 Aligned_cols=78 Identities=23% Similarity=0.521 Sum_probs=66.5
Q ss_pred CCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEe-----ecCCCCeEEEeecCCcee
Q psy3983 3 VSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEI-----KNKKGTELWLGVDALGLN 77 (318)
Q Consensus 3 ~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL-----~d~kg~~~WLgl~k~Gi~ 77 (318)
+-|.++.+- -+.+.+...|..-|..++|+++.|.+--||-||.+.+.||...|-. -...++-+||.|...|+.
T Consensus 750 FyP~ryrdg--a~~eqLR~~l~t~W~~L~G~S~~eCvRIYLTVARKWPFFGAKLF~A~P~~~SS~~~tfiWlAVnEDGvS 827 (936)
T KOG0248|consen 750 FYPSKMLDV--ACIKSLRLQINSNWSELIGMSENECVRIYLTVARKWPFFGAKLFEASPMRTSSERKTFIWLAVNEDGVS 827 (936)
T ss_pred hChhhhhcc--CCHHHHHHHHhhhHHHHhCCChhHheeeeeeecccCcccchhhhhcCCCccccccceeEEEEEcCCcce
Confidence 567777663 4678899999999999999999999999999999999999999988 233456799999999999
Q ss_pred eeecC
Q psy3983 78 IYEKE 82 (318)
Q Consensus 78 Iy~~~ 82 (318)
|.+.+
T Consensus 828 lLd~N 832 (936)
T KOG0248|consen 828 LLDRN 832 (936)
T ss_pred ecccc
Confidence 87654
No 20
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.10 E-value=0.27 Score=52.96 Aligned_cols=34 Identities=38% Similarity=0.564 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLK 286 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (318)
+..|.+++|.|.++...+|...++.++.|+.++.
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777777777777777664
No 21
>KOG4261|consensus
Probab=94.92 E-value=0.019 Score=61.95 Aligned_cols=67 Identities=33% Similarity=0.441 Sum_probs=56.1
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEee----c-CCCCeEEEeecCC
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIK----N-KKGTELWLGVDAL 74 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~----d-~kg~~~WLgl~k~ 74 (318)
+++|..++++- .+.+|...|+++.|++..+|...|.+.|..|..||+.||-++ . .++++..||++|-
T Consensus 262 d~lpk~y~k~k------~ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~VKek~~gknklVprlLgv~K~ 333 (1003)
T KOG4261|consen 262 DFLPKEYVKQK------GEKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFLVKEKMKGKNKLVPRLLGVTKE 333 (1003)
T ss_pred ccChHHHhccc------cchhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEEehhhccCcccccchhhhhhHH
Confidence 46677666542 278999999999999999999999999999999999999992 1 2467899999984
No 22
>KOG3727|consensus
Probab=94.29 E-value=0.057 Score=56.72 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=50.3
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEe
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEI 59 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL 59 (318)
.|+-.+++++|+ .-.+..+|.+-|.+..-|+..||-+.||..=|.|+.||+.||=+
T Consensus 504 ~~vSPr~~rk~k--sKQ~~~RILEAHqNVaQlsl~EAKLrfIQAWQSLPeFGityfiv 559 (664)
T KOG3727|consen 504 CYVSPRYVRKLK--SKQITQRILEAHQNVAQLSLTEAKLRFIQAWQSLPEFGITYFIV 559 (664)
T ss_pred hhcCHHHHHHHh--hHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHhhccccCcEEEEE
Confidence 456678888887 33499999999999999999999999999999999999999988
No 23
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.47 E-value=3.9 Score=44.35 Aligned_cols=39 Identities=33% Similarity=0.464 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q psy3983 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312 (318)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (318)
...+.++||.++++++.+....+.+...++.+.+.++..
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667788888888888777777777777777766653
No 24
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=90.67 E-value=1.8 Score=40.37 Aligned_cols=90 Identities=26% Similarity=0.340 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEE 294 (318)
Q Consensus 215 vqqmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (318)
+++|+.+..+-..+-..-..+|.........+|.+...|..|+..+++++.++...|..++.....++......+.....
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~ 82 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKV 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777666666666667788888888899999999999999888888777776666665555555555555555555
Q ss_pred HHHHHHHHHH
Q psy3983 295 LEARQTELQL 304 (318)
Q Consensus 295 ~~~~~~~~~~ 304 (318)
|+.+......
T Consensus 83 lE~r~~~~ee 92 (237)
T PF00261_consen 83 LENREQSDEE 92 (237)
T ss_dssp HHHHHHHHHH
T ss_pred HHhHHHHHHH
Confidence 5554444333
No 25
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.78 E-value=4.5 Score=38.28 Aligned_cols=38 Identities=34% Similarity=0.417 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304 (318)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
....+.+.+..|.+|.++......++..|..+..+++.
T Consensus 80 Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 80 LEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666655544444
No 26
>KOG1029|consensus
Probab=89.53 E-value=6.4 Score=43.55 Aligned_cols=30 Identities=30% Similarity=0.378 Sum_probs=18.9
Q ss_pred hHHHHHHhhhcccccccccCCCcHHHHHHHHHH
Q psy3983 190 NKRILALCMGNHELYMRRRKPDTIDVQQMKAQA 222 (318)
Q Consensus 190 ~K~iw~lcv~~H~Ff~~rr~~d~~~vqqmkaqa 222 (318)
-|+==++-.||-.+=+||+ .++-||-|.++
T Consensus 316 DKrkeNy~kGqaELerRRq---~leeqqqrere 345 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQ---ALEEQQQRERE 345 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHH---HHHHHHHHHHH
Confidence 4555567788888876655 45556555444
No 27
>PRK11637 AmiB activator; Provisional
Probab=88.48 E-value=9.2 Score=38.41 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=26.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEAR 298 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
.+.+...+..+|...+.+....++++...+..+..++.++..+++..+.+...
T Consensus 73 ~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~ 125 (428)
T PRK11637 73 LLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERL 125 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555555555555555544444444333
No 28
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.31 E-value=18 Score=37.96 Aligned_cols=7 Identities=29% Similarity=0.392 Sum_probs=2.7
Q ss_pred hhhhccc
Q psy3983 309 IRNQSNL 315 (318)
Q Consensus 309 ~~~~~~~ 315 (318)
|..-++|
T Consensus 138 le~~a~l 144 (514)
T TIGR03319 138 LERISGL 144 (514)
T ss_pred HHHHhCC
Confidence 3333333
No 29
>PRK11637 AmiB activator; Provisional
Probab=88.22 E-value=7.2 Score=39.17 Aligned_cols=63 Identities=22% Similarity=0.365 Sum_probs=45.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP 308 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (318)
..++..+++..|..++.++...+..+...+..+..++.++..++.+...++++....+..+..
T Consensus 66 ~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 66 QQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777777777777777777777777777777777666655543
No 30
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=87.94 E-value=8 Score=43.81 Aligned_cols=19 Identities=16% Similarity=0.170 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhHhHHHHH
Q psy3983 222 AREEKNAKQQQRDKLQLEI 240 (318)
Q Consensus 222 a~eek~~~~~er~~l~~e~ 240 (318)
.+|+..++..+|..+..|+
T Consensus 441 e~e~~er~~~er~~~E~er 459 (1021)
T PTZ00266 441 EKENAHRKALEMKILEKKR 459 (1021)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444433
No 31
>PRK12704 phosphodiesterase; Provisional
Probab=87.51 E-value=18 Score=37.99 Aligned_cols=17 Identities=24% Similarity=0.608 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3983 255 ERLKQLEVEMAKRDQDL 271 (318)
Q Consensus 255 ~~l~~~~~~~~~~~~~~ 271 (318)
.+|.+.|+...+..+.|
T Consensus 82 ~~L~qrE~rL~~Ree~L 98 (520)
T PRK12704 82 NELQKLEKRLLQKEENL 98 (520)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444443333333333
No 32
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=87.48 E-value=6.5 Score=44.52 Aligned_cols=7 Identities=0% Similarity=0.078 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy3983 22 SITTWWK 28 (318)
Q Consensus 22 ~I~~~hk 28 (318)
.|.-+|.
T Consensus 130 ALaYLHs 136 (1021)
T PTZ00266 130 ALAYCHN 136 (1021)
T ss_pred HHHHHHh
Confidence 3344553
No 33
>PRK12704 phosphodiesterase; Provisional
Probab=86.88 E-value=21 Score=37.37 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQ 275 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~ 275 (318)
.+++|.+-++...+..+.|...+
T Consensus 87 rE~rL~~Ree~Le~r~e~Lekke 109 (520)
T PRK12704 87 LEKRLLQKEENLDRKLELLEKRE 109 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333
No 34
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.75 E-value=7.2 Score=36.21 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 278 IRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
+.+|+++.+++.++-+.+.++...++.++..++
T Consensus 134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444433
No 35
>KOG1029|consensus
Probab=84.96 E-value=15 Score=40.89 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQL 285 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (318)
++|-+++-+..++.-++++.+|...-++-+++|.++
T Consensus 352 reE~ekkererqEqErk~qlElekqLerQReiE~qr 387 (1118)
T KOG1029|consen 352 REEEEKKERERQEQERKAQLELEKQLERQREIERQR 387 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555556666666666666656555555443
No 36
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=84.72 E-value=29 Score=35.39 Aligned_cols=6 Identities=100% Similarity=1.232 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy3983 256 RLKQLE 261 (318)
Q Consensus 256 ~l~~~~ 261 (318)
||++++
T Consensus 102 rlk~le 107 (387)
T PRK09510 102 RLKQLE 107 (387)
T ss_pred HHHHHH
Confidence 333333
No 37
>PRK00106 hypothetical protein; Provisional
Probab=83.38 E-value=33 Score=36.34 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q psy3983 261 EVEMAKRDQDL 271 (318)
Q Consensus 261 ~~~~~~~~~~~ 271 (318)
|+...+..+.|
T Consensus 103 E~rL~qREE~L 113 (535)
T PRK00106 103 ESRLTERATSL 113 (535)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 38
>KOG0742|consensus
Probab=83.36 E-value=27 Score=36.71 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy3983 214 DVQQMKAQAREEKNAKQQQ 232 (318)
Q Consensus 214 ~vqqmkaqa~eek~~~~~e 232 (318)
+.--|.+|+.-|+.+.+.|
T Consensus 118 ~~eA~qa~~~~er~r~~~E 136 (630)
T KOG0742|consen 118 EYEAAQAQLKSERIRVQAE 136 (630)
T ss_pred HHHHHHHhhhHHHHHHHHH
Confidence 3334566666666666664
No 39
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=82.75 E-value=28 Score=35.98 Aligned_cols=73 Identities=27% Similarity=0.408 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 222 AREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA 297 (318)
Q Consensus 222 a~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (318)
|.++|..-..||++...|-. ++-.+++-.++++.+...+..+++++|...++....|...++.+-++...|++
T Consensus 93 a~~~k~~~e~er~~~~~El~---~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~a 165 (499)
T COG4372 93 AQGEKRAAETEREAARSELQ---KARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEA 165 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566665544432 22233444555566666666666666666665555555444444444433333
No 40
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=82.40 E-value=34 Score=36.41 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy3983 270 DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311 (318)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (318)
.|.+....+.+|...++.++.|++.|.....++-..+.+|+.
T Consensus 411 qlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~ 452 (546)
T PF07888_consen 411 QLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ 452 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777889999999999999999999999888888764
No 41
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.05 E-value=43 Score=32.67 Aligned_cols=55 Identities=27% Similarity=0.470 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 256 RLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
.|..+..+......++......+.+|+.++..+....+.+.++..++..+++.+.
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~ 264 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE 264 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555556666666666666666666666665555443
No 42
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=80.04 E-value=18 Score=27.68 Aligned_cols=48 Identities=27% Similarity=0.372 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA 297 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (318)
++.+.+.|.............|.++....+.|..+++.+..+.+++.+
T Consensus 13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444556666666666667777777777888888887777777766543
No 43
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=79.98 E-value=42 Score=29.62 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 276 EMIRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
+.+..+.......++....+....
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 44
>KOG4460|consensus
Probab=79.96 E-value=64 Score=34.83 Aligned_cols=114 Identities=20% Similarity=0.202 Sum_probs=74.6
Q ss_pred hHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy3983 190 NKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQ 269 (318)
Q Consensus 190 ~K~iw~lcv~~H~Ff~~rr~~d~~~vqqmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 269 (318)
-+.+++--|.+|.+-..+..|.+.|.-++=-+|-+-=...=++|+-|- +.|+..-..+++....+.-+
T Consensus 535 i~s~lqrsva~paL~~~~SsP~~~E~~~lL~~a~~vfrEqYi~~~dlV------------~~e~qrH~~~l~~~k~~QlQ 602 (741)
T KOG4460|consen 535 IRSILQRSVANPALLKASSAPPPEECLQLLSRATQVFREQYILKQDLV------------KEEIQRHVKLLCDQKKKQLQ 602 (741)
T ss_pred HHHhhhhhcCChhccccccCCCcHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999988888888777653322223333332 34444455566666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhccc
Q psy3983 270 DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315 (318)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (318)
+|.++.+++..+++-...+++.-++...++..+.+-+++|+...+-
T Consensus 603 ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~ 648 (741)
T KOG4460|consen 603 DLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHS 648 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc
Confidence 6666666666666666666666666666666666777776655443
No 45
>PTZ00121 MAEBL; Provisional
Probab=78.96 E-value=35 Score=40.54 Aligned_cols=10 Identities=20% Similarity=-0.018 Sum_probs=5.7
Q ss_pred HhHHHHHHHH
Q psy3983 118 QDITLRLFYL 127 (318)
Q Consensus 118 qe~TRylf~L 127 (318)
.+--+|+|.+
T Consensus 947 ~eC~e~lF~~ 956 (2084)
T PTZ00121 947 GGCLEYLFIN 956 (2084)
T ss_pred HHHHHHHHhh
Confidence 3445677754
No 46
>KOG2412|consensus
Probab=78.68 E-value=12 Score=39.82 Aligned_cols=40 Identities=38% Similarity=0.459 Sum_probs=21.1
Q ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy3983 224 EEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVE 263 (318)
Q Consensus 224 eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~ 263 (318)
.++.+....|..+..+...|..||+...+-++.+++.+++
T Consensus 204 ~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~ 243 (591)
T KOG2412|consen 204 REKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDE 243 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3444555555666556666666665554444444444433
No 47
>KOG1962|consensus
Probab=78.29 E-value=31 Score=32.66 Aligned_cols=61 Identities=26% Similarity=0.396 Sum_probs=47.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
+.+...+.+.+.-++++.++...+|..+++....|..+.+..+.|-.+|.++-..++..++
T Consensus 150 ~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 150 EEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3345567777788888888888888888888888888888888888888777766666554
No 48
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=77.26 E-value=49 Score=33.38 Aligned_cols=16 Identities=56% Similarity=0.563 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRD 268 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~ 268 (318)
-++||+|++.+-.++.
T Consensus 99 EqErlkQle~er~~a~ 114 (387)
T COG3064 99 EQERLKQLEKERLKAQ 114 (387)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555554444433
No 49
>KOG0161|consensus
Probab=77.23 E-value=42 Score=40.71 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=17.1
Q ss_pred hHHHHHHhhhcccccccccCCCc-HHHHHHHHHHH
Q psy3983 190 NKRILALCMGNHELYMRRRKPDT-IDVQQMKAQAR 223 (318)
Q Consensus 190 ~K~iw~lcv~~H~Ff~~rr~~d~-~~vqqmkaqa~ 223 (318)
|.+.| +-+-++++|+.-.+..+ +.+.....+++
T Consensus 808 N~r~~-~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~ 841 (1930)
T KOG0161|consen 808 NIRAY-LKLRTWPWWRLFTKVKPLLKVTKTEEEMR 841 (1930)
T ss_pred HHHHH-HhhccCHHHHHHHHHHHHHHhhhhHHHHH
Confidence 44445 55567777766655442 34444433333
No 50
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.71 E-value=1.1e+02 Score=32.70 Aligned_cols=13 Identities=23% Similarity=0.733 Sum_probs=8.2
Q ss_pred CCeEEEeecCCce
Q psy3983 64 GTELWLGVDALGL 76 (318)
Q Consensus 64 g~~~WLgl~k~Gi 76 (318)
+..=|+|+=+-|-
T Consensus 35 s~~DWIGiFKVGw 47 (546)
T PF07888_consen 35 SSKDWIGIFKVGW 47 (546)
T ss_pred CCCCeeEEeecCC
Confidence 3456888877553
No 51
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=75.80 E-value=17 Score=27.89 Aligned_cols=50 Identities=30% Similarity=0.346 Sum_probs=38.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
+....+|+.+|...++-....++.+.+++..|.+|+.+++.+...-..+.
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677899999999999999999999999999999888887776655554
No 52
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=75.44 E-value=33 Score=33.68 Aligned_cols=69 Identities=22% Similarity=0.283 Sum_probs=43.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcc
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (318)
.|++..++.+.+..++.+....++.-.+.-.....+.-++-+.+++...+.++...+...+.+|+...-
T Consensus 69 LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv 137 (314)
T PF04111_consen 69 LEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNV 137 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 445555566666666666655554444555555566666667777777777777777888888776543
No 53
>PLN03086 PRLI-interacting factor K; Provisional
Probab=75.39 E-value=16 Score=39.07 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHH
Q psy3983 220 AQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESV 254 (318)
Q Consensus 220 aqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~ 254 (318)
.+++|.+.|++..|-++.+|+.++++|.+..++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (567)
T PLN03086 11 KLEREQRERKQRAKLKLERERKAKEEAAKQREAIE 45 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777788888888777766666553
No 54
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=74.83 E-value=53 Score=30.54 Aligned_cols=31 Identities=39% Similarity=0.482 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3983 277 MIRRLEEQLKQLQAAKEELEARQTELQLELQ 307 (318)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
.|..|.++++.++..++..+.....++..+.
T Consensus 177 ~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id 207 (237)
T PF00261_consen 177 KIRDLEEKLKEAENRAEFAERRVKKLEKEID 207 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333433333
No 55
>PRK09039 hypothetical protein; Validated
Probab=74.13 E-value=78 Score=31.39 Aligned_cols=59 Identities=24% Similarity=0.205 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP 308 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (318)
...+...|.....+...++.++......|..|..++..++.+-...+++-.+++..+..
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~ 176 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIAD 176 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555555555555555555555555555555554444444443333
No 56
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=73.40 E-value=63 Score=28.24 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=8.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q psy3983 248 KKHQESVERLKQLEVEMAKRD 268 (318)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~ 268 (318)
.+...|..++.+++.+..+..
T Consensus 35 ~EI~sL~~K~~~lE~eld~~~ 55 (143)
T PF12718_consen 35 QEITSLQKKNQQLEEELDKLE 55 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444443333333
No 57
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.21 E-value=90 Score=29.57 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3983 278 IRRLEEQLKQLQAAKE 293 (318)
Q Consensus 278 ~~~~~~~~~~~~~~~~ 293 (318)
|..|+...++++.+..
T Consensus 62 In~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 62 INTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 58
>KOG0163|consensus
Probab=72.18 E-value=75 Score=35.72 Aligned_cols=20 Identities=15% Similarity=0.212 Sum_probs=13.2
Q ss_pred hHHHHHhHHHHHHHHHhhhh
Q psy3983 113 VEEIIQDITLRLFYLQVSRS 132 (318)
Q Consensus 113 ~~eL~qe~TRylf~LQlK~d 132 (318)
..+|+.-.+-||...--|+.
T Consensus 776 m~~lv~kVn~WLv~sRWkk~ 795 (1259)
T KOG0163|consen 776 MLELVAKVNKWLVRSRWKKS 795 (1259)
T ss_pred HHHHHHHHHHHHHHhHHHHh
Confidence 34577777777777666554
No 59
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=72.10 E-value=28 Score=28.14 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy3983 257 LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311 (318)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (318)
|.+++...+.|-+...-.+-.+.+|.++...+..+...+...+.++..+.+.++.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~ 60 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4455555555555555555556666666666666655555555555555555543
No 60
>PHA02562 46 endonuclease subunit; Provisional
Probab=71.60 E-value=1.2e+02 Score=30.88 Aligned_cols=39 Identities=15% Similarity=0.385 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQL 288 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (318)
..++..++..++......+.++.........|+.++..+
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l 370 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333333333333333
No 61
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.08 E-value=1.1e+02 Score=30.05 Aligned_cols=65 Identities=29% Similarity=0.413 Sum_probs=33.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (318)
+++..++.+.|..++.+.....+++...+.....|.++-.+.-...-.+.....+.+.+.+.+.+
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~ 120 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKN 120 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666666666655555555555555444444444444444444444444444433
No 62
>PTZ00121 MAEBL; Provisional
Probab=70.69 E-value=64 Score=38.55 Aligned_cols=7 Identities=0% Similarity=-0.168 Sum_probs=2.6
Q ss_pred CCcHHHH
Q psy3983 210 PDTIDVQ 216 (318)
Q Consensus 210 ~d~~~vq 216 (318)
.+..+.+
T Consensus 1113 e~r~~ee 1119 (2084)
T PTZ00121 1113 EARKAEE 1119 (2084)
T ss_pred HHHHHHH
Confidence 3333333
No 63
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=70.01 E-value=47 Score=34.34 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=24.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAK 292 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (318)
-++...+++..+.+++.+......++.+....|..++..+..++.+.
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555554444
No 64
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=68.86 E-value=1.3e+02 Score=31.20 Aligned_cols=14 Identities=29% Similarity=0.437 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy3983 259 QLEVEMAKRDQDLM 272 (318)
Q Consensus 259 ~~~~~~~~~~~~~~ 272 (318)
+++.++...+..+.
T Consensus 214 ~l~~~l~~~q~~l~ 227 (420)
T COG4942 214 QLNSELSADQKKLE 227 (420)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 65
>PRK02793 phi X174 lysis protein; Provisional
Probab=68.73 E-value=40 Score=26.31 Aligned_cols=47 Identities=17% Similarity=0.235 Sum_probs=36.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAK 292 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (318)
.+....+||.++...++-....++.+.+++..|.+|..+++.+...-
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 52 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKL 52 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888888888888888888888888887777665433
No 66
>PRK02119 hypothetical protein; Provisional
Probab=68.44 E-value=45 Score=26.12 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=36.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAA 291 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (318)
.+....+||.++...++-....++.+-+++..|.+|..+++.+...
T Consensus 7 ~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 7 LENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888888888888888777766443
No 67
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.70 E-value=1e+02 Score=28.64 Aligned_cols=38 Identities=18% Similarity=0.136 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304 (318)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
.++...+..+.-.+|.+++..++.+...|+++...++.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334445555566666666666666555544443
No 68
>PRK00736 hypothetical protein; Provisional
Probab=67.58 E-value=46 Score=25.69 Aligned_cols=46 Identities=17% Similarity=0.250 Sum_probs=37.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAK 292 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (318)
+....+||.++...++-....++.+.+++..|..|..+++.+.+..
T Consensus 4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447789999999999999999999999999988888777765543
No 69
>PRK00295 hypothetical protein; Provisional
Probab=67.31 E-value=52 Score=25.36 Aligned_cols=45 Identities=24% Similarity=0.262 Sum_probs=36.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAA 291 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (318)
+....+||.++...++-....++.+-+++..|.+|..+++.+...
T Consensus 4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344778999999999999999999999998888888877766443
No 70
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=66.63 E-value=98 Score=27.77 Aligned_cols=55 Identities=25% Similarity=0.361 Sum_probs=31.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 248 KKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTEL 302 (318)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.+..+|..++.+++.+.+.....+....+.+.+|+++-.++..+-..+-.+.+++
T Consensus 89 ~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~ 143 (158)
T PF09744_consen 89 QERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHEREREL 143 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777766665555555555566655555544555555444443
No 71
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=66.63 E-value=1.2e+02 Score=28.77 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q psy3983 261 EVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312 (318)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (318)
.++.+..++|....+..|..++.+..+.++...++......+..++.+++.+
T Consensus 52 ~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 52 VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555555555555555555445555555554444
No 72
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=66.62 E-value=1.1e+02 Score=28.50 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=50.1
Q ss_pred EEEcCCccchHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy3983 181 VFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQL 260 (318)
Q Consensus 181 ~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d~~~vqqmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~ 260 (318)
++++.+...|..++.-.+.+ --.- +.-.+.|.+|..++..- ++...+.+.|+..+
T Consensus 77 ViKt~d~~~AE~~Y~~F~~Q-----------------t~~L-----A~~eirR~~LeAQka~~---eR~ia~~~~ra~~L 131 (192)
T PF11180_consen 77 VIKTQDEARAEAIYRDFAQQ-----------------TARL-----ADVEIRRAQLEAQKAQL---ERLIAESEARANRL 131 (192)
T ss_pred eeecCChhhHHHHHHHHHHH-----------------HHHH-----HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 67888888888888644322 1111 12224444444433322 33344444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcc
Q psy3983 261 EVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314 (318)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (318)
+.++..+...-......-.....+...++.+.....++...++..+..|..+.|
T Consensus 132 qaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 132 QADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 544444332222222222233334444444444444455555555555555544
No 73
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=66.54 E-value=9.8 Score=31.73 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy3983 235 KLQLEIAAREKAEKKHQESVERLKQLEVEM 264 (318)
Q Consensus 235 ~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (318)
.|..|+..|..+++.+..++..|..+-...
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasL 31 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASL 31 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888777776666655433
No 74
>KOG0161|consensus
Probab=66.15 E-value=1.4e+02 Score=36.66 Aligned_cols=65 Identities=29% Similarity=0.399 Sum_probs=30.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3983 244 EKAEKKHQESVERLKQLEVEMAKRD-------QDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP 308 (318)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (318)
...|.+..++..++...+++..... +++....+.+++++..+..++.++..++.+...++.+++.
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~ 975 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS 975 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445554444333333 3333333444444444445555555555555555555544
No 75
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=66.02 E-value=91 Score=27.22 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 252 ESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304 (318)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
.|.+|+..++++...++..|..+.+..+...............|+.+....+.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~ 129 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEE 129 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHH
Confidence 35555666666666655555555555544444444444444444444433333
No 76
>PRK04406 hypothetical protein; Provisional
Probab=65.66 E-value=50 Score=26.06 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=35.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQA 290 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (318)
.+....+||.++...++-....++.+.+++..|..|..+++.+..
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677788888888888888888888888888888777766643
No 77
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=65.27 E-value=48 Score=36.45 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=8.7
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q psy3983 246 AEKKHQESVERLKQLEVEM 264 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~ 264 (318)
+++.++++++++..++++-
T Consensus 541 ~~~~~~~l~~~~~~l~~~~ 559 (771)
T TIGR01069 541 QEKLKKELEQEMEELKERE 559 (771)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555444444433
No 78
>PRK04325 hypothetical protein; Provisional
Probab=65.01 E-value=54 Score=25.69 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAA 291 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (318)
+....+||.++...++-....++.+-+++..|.+|..+++.+...
T Consensus 8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~r 52 (74)
T PRK04325 8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQ 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788999999988888999999989998888888777766443
No 79
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=64.68 E-value=1.8e+02 Score=30.25 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHH
Q psy3983 214 DVQQMKAQAREEKNAKQQQRDKLQLE 239 (318)
Q Consensus 214 ~vqqmkaqa~eek~~~~~er~~l~~e 239 (318)
.+|+-|.+++-|+..-..|=++-..|
T Consensus 92 ~a~~~k~~~e~er~~~~~El~~~r~e 117 (499)
T COG4372 92 TAQGEKRAAETEREAARSELQKARQE 117 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777666554444444333
No 80
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=64.62 E-value=1.2e+02 Score=28.26 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 252 ESVERLKQLEVEMAKR---DQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 252 ~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
++..+++.++.-...+ +++|......+..|+++.+.+.+....+++.+..+..+++.|.
T Consensus 47 ~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lq 108 (193)
T PF14662_consen 47 DLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQ 108 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333 5556666666666666666666666666665555555555443
No 81
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=64.14 E-value=1.5e+02 Score=28.99 Aligned_cols=55 Identities=27% Similarity=0.393 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
...+..+|.....+.......|.+.+.....+.++.....+.+.++.+...+++.
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~ 265 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEK 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666666666666666666655555543
No 82
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=64.03 E-value=1.2e+02 Score=27.89 Aligned_cols=62 Identities=31% Similarity=0.413 Sum_probs=35.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy3983 244 EKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPI 309 (318)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (318)
..++.+..+|...|.+++.+.. .|.....+...++.+++.+.-+.+-|+.+-..++.+...|
T Consensus 65 ~~a~~e~~eL~k~L~~y~kdK~----~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL 126 (201)
T PF13851_consen 65 KKAEEEVEELRKQLKNYEKDKQ----SLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDEL 126 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777788888877764432 3444445555555555555555555555555555554444
No 83
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.96 E-value=59 Score=26.05 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 259 QLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAA 291 (318)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (318)
+++...+.|-+.+.-.+-.+.+|.++...+..+
T Consensus 8 kLE~KiqqAvdTI~LLQmEieELKEknn~l~~e 40 (79)
T COG3074 8 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence 333333333333333333444444444433333
No 84
>KOG1265|consensus
Probab=63.72 E-value=90 Score=35.55 Aligned_cols=42 Identities=31% Similarity=0.365 Sum_probs=23.2
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 275 (318)
++-.+|+..||-+..-.++..+-.+.+.+...+.++.|.+.+
T Consensus 1114 dK~e~er~~rE~n~s~i~~~V~e~krL~~~~~k~~e~L~k~~ 1155 (1189)
T KOG1265|consen 1114 DKAERERRKRELNSSNIKEFVEERKRLAEKQSKRQEQLVKKH 1155 (1189)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555666666666666665444
No 85
>PRK00846 hypothetical protein; Provisional
Probab=63.40 E-value=64 Score=25.84 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=38.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 244 EKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEE 294 (318)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (318)
+..+....+|+.++...++-....++.+.+++..|.+|..+++.+...-..
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666788888888888888888888888888888888887766554433
No 86
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=63.40 E-value=1.2e+02 Score=27.65 Aligned_cols=21 Identities=29% Similarity=0.447 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3983 255 ERLKQLEVEMAKRDQDLMEAQ 275 (318)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~ 275 (318)
.+|.+-++...+..+.|...+
T Consensus 85 ~rl~~rE~~L~~~~~~L~~~e 105 (201)
T PF12072_consen 85 KRLQQREEQLDRRLEQLEKRE 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334443333333334443333
No 87
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=62.90 E-value=58 Score=35.66 Aligned_cols=14 Identities=21% Similarity=0.378 Sum_probs=8.1
Q ss_pred CCcHHHHHHHHHHH
Q psy3983 210 PDTIDVQQMKAQAR 223 (318)
Q Consensus 210 ~d~~~vqqmkaqa~ 223 (318)
|++.+.=++=.+|.
T Consensus 532 p~~~E~l~lL~~a~ 545 (717)
T PF10168_consen 532 PSPQECLELLSQAT 545 (717)
T ss_pred CCCHHHHHHHHHHH
Confidence 55666666655553
No 88
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=62.63 E-value=1.3e+02 Score=27.98 Aligned_cols=83 Identities=18% Similarity=0.258 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKE 293 (318)
Q Consensus 214 ~vqqmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (318)
.+++...+.......-|..-+++..|+ .....+...+..++..++...++....+...+..+..|+.++..++.-..
T Consensus 25 ~~~~~~~~~~~~~~~sQ~~id~~~~e~---~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 25 QAQQVQQQWVQAAQQSQKRIDQWDDEK---QELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455544444444444444444444443 22344455566666666666666666666666667777777766666666
Q ss_pred HHHHHH
Q psy3983 294 ELEARQ 299 (318)
Q Consensus 294 ~~~~~~ 299 (318)
+|.--.
T Consensus 102 ~l~p~m 107 (251)
T PF11932_consen 102 ELVPLM 107 (251)
T ss_pred HHHHHH
Confidence 655543
No 89
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=62.56 E-value=2e+02 Score=32.93 Aligned_cols=22 Identities=45% Similarity=0.638 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3983 278 IRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
...++..+...+...+.+++..
T Consensus 872 ~~~l~~~l~~~~~~~~~l~~~l 893 (1163)
T COG1196 872 KEELEDELKELEEEKEELEEEL 893 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 90
>PLN03086 PRLI-interacting factor K; Provisional
Probab=62.40 E-value=54 Score=35.10 Aligned_cols=46 Identities=33% Similarity=0.419 Sum_probs=24.4
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 233 RDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLE 282 (318)
Q Consensus 233 r~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (318)
|+||.+|...|....+.+.+-++ ...++++++.+++ ++..+.++|+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~ 54 (567)
T PLN03086 9 REKLEREQRERKQRAKLKLERER---KAKEEAAKQREAI-EAAQRSRRLD 54 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHH
Confidence 45565555555444444444443 3445666666665 4545555553
No 91
>KOG1962|consensus
Probab=60.90 E-value=1.1e+02 Score=28.91 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy3983 260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPI 309 (318)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (318)
+++++....+++.-.++..+....+++.++.....|.++-.+...|-.++
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 56666666666666666666666666666666666666655555444443
No 92
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=60.82 E-value=1.1e+02 Score=26.29 Aligned_cols=15 Identities=33% Similarity=0.257 Sum_probs=8.8
Q ss_pred CccchHHHHHHhhhc
Q psy3983 186 RVRVNKRILALCMGN 200 (318)
Q Consensus 186 ~~~~~K~iw~lcv~~ 200 (318)
...++.-||.|...+
T Consensus 33 ~~~vin~i~~Ll~~~ 47 (151)
T PF11559_consen 33 DVRVINCIYDLLQQR 47 (151)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667777766443
No 93
>PRK12705 hypothetical protein; Provisional
Probab=60.67 E-value=2.2e+02 Score=30.19 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3983 255 ERLKQLEVEMAKRDQDL 271 (318)
Q Consensus 255 ~~l~~~~~~~~~~~~~~ 271 (318)
.||.+-++...+..+.|
T Consensus 84 ~rl~~~e~~l~~~~~~l 100 (508)
T PRK12705 84 ERLVQKEEQLDARAEKL 100 (508)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444433333333
No 94
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=60.65 E-value=1.4e+02 Score=30.39 Aligned_cols=58 Identities=26% Similarity=0.127 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
.+.||.-+.++.+|.+..+-.|......+.+.+|+...+-.|..+-.+.++++-.+-|
T Consensus 129 ~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~~eyQ 186 (401)
T PF06785_consen 129 IQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELNDEYQ 186 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555666666655556555666666666665555555555555555555444
No 95
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=60.50 E-value=1.5e+02 Score=32.97 Aligned_cols=91 Identities=26% Similarity=0.285 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhHhH-HHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 220 AQAREEKNAKQQQRDKL-QLEI-AAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA 297 (318)
Q Consensus 220 aqa~eek~~~~~er~~l-~~e~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (318)
.++|||+.++..+--.. ..|- ..+-..|.+..++..+|.....|....-..|.+...+|.+|.+...+++.+...|..
T Consensus 62 r~~ree~eq~i~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~ 141 (769)
T PF05911_consen 62 RQVREEQEQKIHEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMA 141 (769)
T ss_pred HHhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 36777777666553221 1222 334455666777777777777777777788888999999999999999998888888
Q ss_pred HHHHHHHHhhchh
Q psy3983 298 RQTELQLELQPIR 310 (318)
Q Consensus 298 ~~~~~~~~~~~~~ 310 (318)
+...++.+...|+
T Consensus 142 ~l~~~eken~~Lk 154 (769)
T PF05911_consen 142 RLESTEKENSSLK 154 (769)
T ss_pred HHHHHHHHHHHHH
Confidence 8777777665554
No 96
>KOG4371|consensus
Probab=60.27 E-value=4.3 Score=45.97 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=34.9
Q ss_pred CCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcC
Q psy3983 97 NPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSR 136 (318)
Q Consensus 97 ~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~r 136 (318)
+.+.+.|||.||...+.- |..+-.|+.||||++-+++.+
T Consensus 114 p~l~l~frv~~yi~~~~~-l~~~~~r~~yylql~~n~l~~ 152 (1332)
T KOG4371|consen 114 PELSLEFRVSGYIRNNIS-LAASPGRKSYYLQLFTNTLAP 152 (1332)
T ss_pred eeEEEEEEEEEeecCcee-ccCCCCccchhhhhhhhhhcc
Confidence 446799999999999874 899999999999999999994
No 97
>PTZ00491 major vault protein; Provisional
Probab=60.01 E-value=79 Score=35.45 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=10.1
Q ss_pred EEEEeecCCCchHHH
Q psy3983 102 KFRAKFYPEDVVEEI 116 (318)
Q Consensus 102 ~f~vkfyp~d~~~eL 116 (318)
.|+.|-.|+.+...|
T Consensus 411 e~weK~lp~~ve~lL 425 (850)
T PTZ00491 411 ELWEKPLPPNVEELL 425 (850)
T ss_pred EEEeccCCHHHHHHH
Confidence 577777777776533
No 98
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=59.79 E-value=77 Score=34.92 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHhc
Q psy3983 35 REDAMMEYLKIAQD 48 (318)
Q Consensus 35 ~~eAe~efLkvaq~ 48 (318)
..|..+.+...+..
T Consensus 269 ~lD~l~a~a~~a~~ 282 (771)
T TIGR01069 269 FLDSLQARARYAKA 282 (771)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333444443
No 99
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=59.57 E-value=62 Score=27.60 Aligned_cols=66 Identities=27% Similarity=0.320 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 239 EIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304 (318)
Q Consensus 239 e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
++..+..--+++++|...+..++.+...+.+.+.+.+..+.++...+.....++-+|+.+...++-
T Consensus 28 ~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~ 93 (107)
T PF09304_consen 28 EKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQK 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344445566779899999999998888888888888888777776655556566666554443
No 100
>KOG4571|consensus
Probab=59.44 E-value=53 Score=32.43 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=10.0
Q ss_pred ecCCCCeEEEeecC
Q psy3983 60 KNKKGTELWLGVDA 73 (318)
Q Consensus 60 ~d~kg~~~WLgl~k 73 (318)
.++.++..|+.++.
T Consensus 38 ~~k~~~~~~~~~~~ 51 (294)
T KOG4571|consen 38 LAKAATLEWLAVDG 51 (294)
T ss_pred cccccccccccccC
Confidence 45567778888776
No 101
>KOG0994|consensus
Probab=59.40 E-value=2.4e+02 Score=33.33 Aligned_cols=29 Identities=21% Similarity=0.252 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 256 RLKQLEVEMAKRDQDLMEAQEMIRRLEEQ 284 (318)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (318)
.|.+.++++..+...+..+.+++.+|+..
T Consensus 1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~ 1627 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETR 1627 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 102
>PF04502 DUF572: Family of unknown function (DUF572) ; InterPro: IPR007590 This entry represents eukaryotic proteins with undetermined function belonging to the CWC16 family.
Probab=59.28 E-value=64 Score=31.71 Aligned_cols=10 Identities=40% Similarity=0.753 Sum_probs=7.1
Q ss_pred EEeecCCCch
Q psy3983 104 RAKFYPEDVV 113 (318)
Q Consensus 104 ~vkfyp~d~~ 113 (318)
.+||||||-.
T Consensus 7 ~nkYyPPD~d 16 (324)
T PF04502_consen 7 LNKYYPPDFD 16 (324)
T ss_pred CCCccCCCCC
Confidence 4578888875
No 103
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=58.31 E-value=1.7e+02 Score=27.75 Aligned_cols=31 Identities=16% Similarity=0.149 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy3983 236 LQLEIAAREKAEKKHQESVERLKQLEVEMAK 266 (318)
Q Consensus 236 l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (318)
|..-...+++|++...+.+.+|...+.+...
T Consensus 45 l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ 75 (250)
T PRK14474 45 WQDAEQRQQEAGQEAERYRQKQQSLEQQRAS 75 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555666666666666666555443
No 104
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=57.81 E-value=1.2e+02 Score=29.88 Aligned_cols=25 Identities=4% Similarity=0.085 Sum_probs=20.0
Q ss_pred cchHHHHHHhhhcccccccccCCCc
Q psy3983 188 RVNKRILALCMGNHELYMRRRKPDT 212 (318)
Q Consensus 188 ~~~K~iw~lcv~~H~Ff~~rr~~d~ 212 (318)
..|..|..|+.....|+.-.+...+
T Consensus 194 ~Aa~~Lc~WV~A~~~Y~~v~~~V~P 218 (344)
T PF12777_consen 194 KAAGSLCKWVRAMVKYYEVNKEVEP 218 (344)
T ss_dssp TTHHHHHHHHHHHHHHHHHCCCCCH
T ss_pred hcchHHHHHHHHHHHHHHHHHHHhH
Confidence 5789999999999999877765543
No 105
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=56.43 E-value=91 Score=34.40 Aligned_cols=26 Identities=15% Similarity=-0.037 Sum_probs=13.2
Q ss_pred HHHHHccCCCHHHHHHHHHHHHhccC
Q psy3983 25 TWWKEHKGMLREDAMMEYLKIAQDLE 50 (318)
Q Consensus 25 ~~hk~~kG~~~~eAe~efLkvaq~Le 50 (318)
.+.....-++..|..+.+-..+...+
T Consensus 264 ~l~~~~~~l~~lD~l~a~a~~a~~~~ 289 (782)
T PRK00409 264 FLKFLNKIFDELDFIFARARYAKALK 289 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 33333344455555555555666544
No 106
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=55.91 E-value=12 Score=30.00 Aligned_cols=25 Identities=40% Similarity=0.728 Sum_probs=22.3
Q ss_pred HHHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 25 TWWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 25 ~~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
.-|+++.|||+.+|.-.|++++.+|
T Consensus 56 ~AW~~l~~ms~~eA~~~YV~~~~~l 80 (85)
T cd00435 56 DAWNSLKGMSKEDAMKAYIAKVEEL 80 (85)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4678899999999999999988875
No 107
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=55.86 E-value=7.9 Score=30.55 Aligned_cols=26 Identities=42% Similarity=0.783 Sum_probs=22.2
Q ss_pred HHHHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 24 TTWWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 24 ~~~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
-.-|+++.|||+.+|.-.|++++.++
T Consensus 57 ~~AW~~l~gms~~eA~~~Yi~~v~~~ 82 (87)
T PF00887_consen 57 WDAWKALKGMSKEEAMREYIELVEEL 82 (87)
T ss_dssp HHHHHTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 34688899999999999999988764
No 108
>KOG2412|consensus
Probab=55.71 E-value=2.7e+02 Score=30.07 Aligned_cols=51 Identities=20% Similarity=0.324 Sum_probs=27.1
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 225 EKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275 (318)
Q Consensus 225 ek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 275 (318)
+-++-+.+.+...+.+..++..|++..|-+++-++-|++.++...+.++.+
T Consensus 198 el~~i~~~~q~~eqi~~~~~~~e~kr~Eaerk~~~~qEe~Rqk~d~~~~~~ 248 (591)
T KOG2412|consen 198 ELQAIQREKQRKEQIRERKERSEEKREEAERKRRAHQEELRQKEDEEAELQ 248 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444445555555555555555566665555555555555554444443
No 109
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=54.89 E-value=1.5e+02 Score=26.70 Aligned_cols=20 Identities=20% Similarity=0.320 Sum_probs=0.0
Q ss_pred cchHHHHHHhhhcccccccc
Q psy3983 188 RVNKRILALCMGNHELYMRR 207 (318)
Q Consensus 188 ~~~K~iw~lcv~~H~Ff~~r 207 (318)
.....+.++.-+-...|+.+
T Consensus 71 ~le~~~~~l~~ELael~r~~ 90 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSK 90 (194)
T ss_dssp --------------------
T ss_pred cccccccccccccccccccc
Confidence 34455667777777777544
No 110
>KOG0163|consensus
Probab=54.84 E-value=2.9e+02 Score=31.38 Aligned_cols=12 Identities=25% Similarity=0.293 Sum_probs=4.9
Q ss_pred CCcHHHHHHHHH
Q psy3983 210 PDTIDVQQMKAQ 221 (318)
Q Consensus 210 ~d~~~vqqmkaq 221 (318)
.||-+-||...+
T Consensus 912 l~sk~~q~~~e~ 923 (1259)
T KOG0163|consen 912 LDSKEQQQIEEL 923 (1259)
T ss_pred hhhhHHHHHHHH
Confidence 444444443333
No 111
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=54.68 E-value=75 Score=34.13 Aligned_cols=11 Identities=18% Similarity=0.365 Sum_probs=6.3
Q ss_pred HHHHhccCccc
Q psy3983 43 LKIAQDLEMYG 53 (318)
Q Consensus 43 Lkvaq~Le~yG 53 (318)
-..|++|++-|
T Consensus 72 A~~~k~lGy~~ 82 (594)
T PF05667_consen 72 AQACKELGYRG 82 (594)
T ss_pred HHHHHHcCCCC
Confidence 44666666544
No 112
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=54.37 E-value=2.1e+02 Score=28.03 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhccc
Q psy3983 281 LEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315 (318)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (318)
+......+.++.+.|+.+...+...++++++..+.
T Consensus 207 ~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~ 241 (264)
T PF07246_consen 207 LEARESGLRNESKWLEHELSDAKEDMIRLRNDISD 241 (264)
T ss_pred HHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33334445566677777778888888888876443
No 113
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=54.18 E-value=3e+02 Score=29.39 Aligned_cols=7 Identities=57% Similarity=0.672 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy3983 269 QDLMEAQ 275 (318)
Q Consensus 269 ~~~~~~~ 275 (318)
.++.+++
T Consensus 237 ~ele~a~ 243 (650)
T TIGR03185 237 NELEEAQ 243 (650)
T ss_pred HHHHHHH
Confidence 3333333
No 114
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=53.96 E-value=2.8e+02 Score=29.36 Aligned_cols=9 Identities=22% Similarity=0.597 Sum_probs=4.8
Q ss_pred ceEEEEeCC
Q psy3983 166 RKFIIKPID 174 (318)
Q Consensus 166 kkF~Ikp~d 174 (318)
+.-++-|+.
T Consensus 153 ~tqI~IPL~ 161 (489)
T PF05262_consen 153 KTQIVIPLS 161 (489)
T ss_pred CceEEEecc
Confidence 445555653
No 115
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=53.85 E-value=1.1e+02 Score=24.08 Aligned_cols=39 Identities=28% Similarity=0.334 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 257 LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEEL 295 (318)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (318)
+.+++.....+-+.....+..+.+|.++...+.++.+.|
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L 44 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEEL 44 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444444443333333344444444433333333333
No 116
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=53.60 E-value=1.9e+02 Score=26.99 Aligned_cols=77 Identities=17% Similarity=0.220 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy3983 235 KLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311 (318)
Q Consensus 235 ~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (318)
.|..-...|-+.|..+.-+++.+..-++.....+.||..++..-......-++++.+...|+.++.+++..+..+..
T Consensus 99 ~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~ 175 (192)
T PF11180_consen 99 RLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQR 175 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666677667777777777777777776666666677777777777777777777776665543
No 117
>PRK02224 chromosome segregation protein; Provisional
Probab=53.53 E-value=3.3e+02 Score=29.70 Aligned_cols=11 Identities=0% Similarity=0.054 Sum_probs=4.5
Q ss_pred CCccchHHHHH
Q psy3983 185 PRVRVNKRILA 195 (318)
Q Consensus 185 ~~~~~~K~iw~ 195 (318)
.+|.--+.|+.
T Consensus 146 ~~p~~R~~ii~ 156 (880)
T PRK02224 146 ATPSDRQDMID 156 (880)
T ss_pred CCHHHHHHHHH
Confidence 34434444444
No 118
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=52.95 E-value=1.8e+02 Score=26.47 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 254 VERLKQLEVEMAKRDQDLMEAQE 276 (318)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~ 276 (318)
...|...+....++.+.|....+
T Consensus 77 ~~el~~~E~rl~~rE~~L~~~~~ 99 (201)
T PF12072_consen 77 RKELQRLEKRLQQREEQLDRRLE 99 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 119
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=52.92 E-value=1.1e+02 Score=33.82 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q psy3983 250 HQESVERLKQL 260 (318)
Q Consensus 250 ~~~~~~~l~~~ 260 (318)
+.++++++..+
T Consensus 550 ~~~l~~~~~~l 560 (782)
T PRK00409 550 KEELEEKKEKL 560 (782)
T ss_pred HHHHHHHHHHH
Confidence 33343333333
No 120
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=52.68 E-value=1.4e+02 Score=28.89 Aligned_cols=57 Identities=30% Similarity=0.374 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 249 KHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLE 305 (318)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (318)
++++|-++|..++.+....++.|.+..-.-.+|++.++.+.-+-..|..+-.+++..
T Consensus 150 EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 150 EKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 344555555555555555555555555555555555555555555565555555544
No 121
>KOG0976|consensus
Probab=52.66 E-value=1.4e+02 Score=33.82 Aligned_cols=119 Identities=13% Similarity=0.146 Sum_probs=70.7
Q ss_pred chHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHH---HHHhHHHHHHHHHHHHH
Q psy3983 189 VNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDK---LQLEIAAREK---AEKKHQESVERLKQLEV 262 (318)
Q Consensus 189 ~~K~iw~lcv~~H~Ff~~rr~~d~~~vqqmkaqa~eek~~~~~er~~---l~~e~~~~~~---~~~~~~~~~~~l~~~~~ 262 (318)
.+.-+-.--.....||.-.| +.-.+.|.-+....-++..-++++.+ ++.++..|+. -|..+.+++.+++.++.
T Consensus 35 s~edlk~r~L~aeniiqdlr-serdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn 113 (1265)
T KOG0976|consen 35 SHEDLKKRLLDAENIIQDLR-SERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQN 113 (1265)
T ss_pred chHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34444444445556664333 22233333333333333344444432 4455555554 34445666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3983 263 EMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP 308 (318)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (318)
......-++...|+++..++.++++.+-+.+.+.++..+++.++..
T Consensus 114 ~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsA 159 (1265)
T KOG0976|consen 114 KCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSA 159 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 7777777777788888888888888888888888777777766644
No 122
>KOG0980|consensus
Probab=52.63 E-value=3.5e+02 Score=30.85 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 256 RLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA 297 (318)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (318)
+..+...+...+.++..+..+....|..++.+++.+..+++.
T Consensus 446 K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~ 487 (980)
T KOG0980|consen 446 KYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAET 487 (980)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444445555555555555555555555333
No 123
>PRK04863 mukB cell division protein MukB; Provisional
Probab=52.50 E-value=2.6e+02 Score=33.44 Aligned_cols=15 Identities=27% Similarity=0.158 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEM 264 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~ 264 (318)
..+++.++..++.+.
T Consensus 316 L~ELe~rL~kLEkQa 330 (1486)
T PRK04863 316 LAELNEAESDLEQDY 330 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 124
>PRK10698 phage shock protein PspA; Provisional
Probab=52.32 E-value=2e+02 Score=26.80 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTE 301 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
+.....++..++.+.......+......+..|+.++..+...+..|-++...
T Consensus 94 K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~ 145 (222)
T PRK10698 94 KQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQA 145 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566667777777777777777777777777777777777777776633
No 125
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=51.77 E-value=2.3e+02 Score=27.25 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
+..+.+.+..|+.++..+..+.+.|+..+..+...+.+++
T Consensus 98 ~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e 137 (239)
T COG1579 98 IQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLE 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555544444433
No 126
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=50.88 E-value=4e+02 Score=30.83 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQ 269 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~ 269 (318)
...++.++.++..+.+...+
T Consensus 687 l~~l~~~l~~~~~e~~~~~~ 706 (1201)
T PF12128_consen 687 LNELEEELKQLKQELEELLE 706 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 127
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=50.87 E-value=81 Score=33.15 Aligned_cols=14 Identities=7% Similarity=0.283 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q psy3983 251 QESVERLKQLEVEM 264 (318)
Q Consensus 251 ~~~~~~l~~~~~~~ 264 (318)
.||+++|..++.++
T Consensus 79 sELEKqLaaLrqEl 92 (475)
T PRK13729 79 AQMQKQYEEIRREL 92 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444333
No 128
>KOG4364|consensus
Probab=50.39 E-value=2.6e+02 Score=30.95 Aligned_cols=21 Identities=29% Similarity=0.305 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy3983 213 IDVQQMKAQAREEKNAKQQQR 233 (318)
Q Consensus 213 ~~vqqmkaqa~eek~~~~~er 233 (318)
+.-|+-|--...+|+|.++||
T Consensus 248 ~~KQ~rk~meEreK~R~erEr 268 (811)
T KOG4364|consen 248 LLKQLRKNMEEREKERKERER 268 (811)
T ss_pred HHHHHHHhHHHHHHHHHHHHH
Confidence 344554444444455555554
No 129
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=50.06 E-value=87 Score=27.99 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3983 277 MIRRLEEQLKQLQAAKEELEA 297 (318)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~ 297 (318)
++..|.++++..+.+.+.|..
T Consensus 162 ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 162 EIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443333333333
No 130
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=49.26 E-value=2.2e+02 Score=26.29 Aligned_cols=6 Identities=17% Similarity=0.622 Sum_probs=2.6
Q ss_pred EEEcCC
Q psy3983 181 VFFAPR 186 (318)
Q Consensus 181 ~F~~~~ 186 (318)
.|+|++
T Consensus 11 ~~~C~~ 16 (302)
T PF10186_consen 11 RFYCAN 16 (302)
T ss_pred CeECHH
Confidence 344443
No 131
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=49.11 E-value=13 Score=24.57 Aligned_cols=19 Identities=21% Similarity=0.387 Sum_probs=16.9
Q ss_pred hhHhhcCCChHHHHHHHHH
Q psy3983 7 RVMDQHKMSPSEWESSITT 25 (318)
Q Consensus 7 ~~~~q~~~~~~~~e~~I~~ 25 (318)
+|+..|++|.++|..++..
T Consensus 9 rYV~eh~ls~ee~~~RL~~ 27 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERLAA 27 (28)
T ss_pred hhHHhcCCCHHHHHHHHHc
Confidence 5899999999999998864
No 132
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=48.90 E-value=3.6e+02 Score=31.22 Aligned_cols=28 Identities=32% Similarity=0.445 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 270 DLMEAQEMIRRLEEQLKQLQAAKEELEA 297 (318)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (318)
++..+++...........++.+...+..
T Consensus 477 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 504 (1201)
T PF12128_consen 477 RLEQAQEQQNQAQQAVEELQAEEQELRK 504 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 133
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=48.55 E-value=91 Score=26.11 Aligned_cols=42 Identities=19% Similarity=0.393 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy3983 217 QMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLE 261 (318)
Q Consensus 217 qmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~ 261 (318)
.-+..|+|+..-++.|+++|.. ++++.+++...-++.|.+++
T Consensus 55 ~krE~A~E~~Y~r~~EkEqL~~---Lk~kl~~e~~~~~k~i~~le 96 (100)
T PF04568_consen 55 GKREAAQEEQYFRKKEKEQLKK---LKEKLKEEIEHHRKEIDELE 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4577888999999998888843 34444443333334444444
No 134
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=48.47 E-value=1.6e+02 Score=24.68 Aligned_cols=55 Identities=29% Similarity=0.420 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
+.++-.++.+++..+.....++.+....+..|.++...++-|-+.|..+..+...
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456667777777777777777777777777888777777777777766655544
No 135
>PF15236 CCDC66: Coiled-coil domain-containing protein 66
Probab=48.11 E-value=2.1e+02 Score=25.84 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296 (318)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
|+++..+..+-=+........|-+.+..+++++..+.
T Consensus 103 ~E~E~~~~~~KEe~~~~k~~~l~e~~q~Aqe~A~~~K 139 (157)
T PF15236_consen 103 FEEEQRKQREKEEEQTRKTQELYEAMQRAQEEAQREK 139 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333222333344444444444444444433
No 136
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=47.56 E-value=60 Score=31.90 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=11.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 245 KAEKKHQESVERLKQLEVEMAKRDQDL 271 (318)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ 271 (318)
+++.+..+.+.+|...+.+....+..|
T Consensus 225 ~a~~~l~~~~~~L~~~~~~l~~l~~~l 251 (344)
T PF12777_consen 225 EAEAELEEAEEQLAEKQAELAELEEKL 251 (344)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433333
No 137
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=47.51 E-value=1.8e+02 Score=24.85 Aligned_cols=16 Identities=19% Similarity=0.542 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3983 256 RLKQLEVEMAKRDQDL 271 (318)
Q Consensus 256 ~l~~~~~~~~~~~~~~ 271 (318)
|+..++.+...+...+
T Consensus 59 r~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 59 RIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 138
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.07 E-value=3.9e+02 Score=29.26 Aligned_cols=56 Identities=25% Similarity=0.437 Sum_probs=32.7
Q ss_pred HhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 248 KKHQESVERLKQLEVEMAK---RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303 (318)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
++.++|+.+|.++..+... .+.++...+++|..|+-++.......++|+.+..++.
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555554432 2334555666777777777766666666666665554
No 139
>KOG1853|consensus
Probab=46.19 E-value=3.1e+02 Score=27.16 Aligned_cols=47 Identities=23% Similarity=0.328 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEM----IRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
..++|+.+-.+..+++.+|.++... +..++..+.++-+.-+-|+...
T Consensus 106 ikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESEL 156 (333)
T KOG1853|consen 106 IKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESEL 156 (333)
T ss_pred HHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555556666666555432 2234445555554444444443
No 140
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.09 E-value=2e+02 Score=28.13 Aligned_cols=47 Identities=19% Similarity=0.287 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
++..|..+..+....+....+.++++..+.+++++++.+-+.++.+.
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I 96 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI 96 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444433
No 141
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=46.04 E-value=2.4e+02 Score=25.90 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=25.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 244 EKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAK 292 (318)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (318)
.+.|.+..+++..+.+++++.+............|.+|......+.++.
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEI 175 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666655554444444444444444444444333
No 142
>KOG0971|consensus
Probab=45.82 E-value=5.2e+02 Score=29.96 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
++++.+.|....+-+..+--+-..++|++.-|..++.-+++.-++|+-...-+..||
T Consensus 299 ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEm 355 (1243)
T KOG0971|consen 299 KERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEM 355 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566655555555555666666666666666666666655544444443
No 143
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=45.65 E-value=34 Score=30.22 Aligned_cols=24 Identities=13% Similarity=0.335 Sum_probs=18.7
Q ss_pred cCCCCeEEEeecCCceeeeecCCc
Q psy3983 61 NKKGTELWLGVDALGLNIYEKEDN 84 (318)
Q Consensus 61 d~kg~~~WLgl~k~Gi~Iy~~~dk 84 (318)
..+....||.++..||.|.....+
T Consensus 49 ~~kk~kV~L~IS~dGi~v~D~~T~ 72 (139)
T cd01215 49 GAHKTRITLQINIDGIKVLDEKTG 72 (139)
T ss_pred ccccceEEEEEccCCEEEEcCCCC
Confidence 446678999999999999865433
No 144
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=45.55 E-value=2.6e+02 Score=26.10 Aligned_cols=47 Identities=23% Similarity=0.314 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
+.+|..+++++..+...........+..+..+++++..++...+.++
T Consensus 51 ~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 51 KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333333333333333333333333333
No 145
>KOG0977|consensus
Probab=45.29 E-value=3.6e+02 Score=28.96 Aligned_cols=8 Identities=13% Similarity=-0.122 Sum_probs=3.6
Q ss_pred eEEEcCCc
Q psy3983 180 FVFFAPRV 187 (318)
Q Consensus 180 ~~F~~~~~ 187 (318)
..|.++-.
T Consensus 88 ~~ye~El~ 95 (546)
T KOG0977|consen 88 AKYEAELA 95 (546)
T ss_pred HHhhhhHH
Confidence 34444443
No 146
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.21 E-value=4.8e+02 Score=30.43 Aligned_cols=48 Identities=31% Similarity=0.329 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 249 KHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296 (318)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
.+..++.+|..+..+......++.+..+.+..|..++..++.+..++.
T Consensus 882 ~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1311)
T TIGR00606 882 RRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELI 929 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555444443
No 147
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=45.02 E-value=3.1e+02 Score=26.88 Aligned_cols=52 Identities=21% Similarity=0.397 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
....|...++++++..+++.+..+++.+..+.+.+++.+..+|.....-+.-
T Consensus 205 ~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~s 256 (269)
T PF05278_consen 205 KKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKS 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666666666666666666666666655544443
No 148
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=44.65 E-value=2.9e+02 Score=26.46 Aligned_cols=25 Identities=28% Similarity=0.461 Sum_probs=12.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDL 271 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~ 271 (318)
+.+...+++.+.++.+.+......+
T Consensus 235 e~~~~~~ee~~~~L~ekme~e~~~~ 259 (297)
T PF02841_consen 235 EQQERSYEEHIKQLKEKMEEEREQL 259 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445556666655555544433
No 149
>KOG2189|consensus
Probab=44.52 E-value=1.1e+02 Score=34.04 Aligned_cols=65 Identities=28% Similarity=0.425 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhc
Q psy3983 249 KHQESVERLKQLEVEMAKR---------------DQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQS 313 (318)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (318)
.-+||+++|+=+++++.++ ..++...++.+.+||.++.++..-.+.|.+...++.+...-|+...
T Consensus 57 RcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl~~t~ 136 (829)
T KOG2189|consen 57 RCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVLEKTD 136 (829)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567788888888888774 3455567777788888888888888888888877777766665543
No 150
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=44.51 E-value=3.4e+02 Score=27.12 Aligned_cols=62 Identities=32% Similarity=0.346 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (318)
.-+++.+++++-.|.....+.|..+.+.-..|..++..+++.-++..+-..++++++..+|.
T Consensus 243 ivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 243 IVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34455666677777777777777777777777777777777777777777777777776664
No 151
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.38 E-value=4e+02 Score=29.35 Aligned_cols=53 Identities=26% Similarity=0.325 Sum_probs=23.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
++.+.++++|+..+..+..+..++|.+.++++..|.+....+.+.-++...++
T Consensus 557 ~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Q 609 (717)
T PF10168_consen 557 DLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQ 609 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554444444444444444333333333333333333
No 152
>PF15556 Zwint: ZW10 interactor
Probab=44.28 E-value=2.8e+02 Score=26.55 Aligned_cols=8 Identities=13% Similarity=-0.180 Sum_probs=4.0
Q ss_pred chHHHHHH
Q psy3983 189 VNKRILAL 196 (318)
Q Consensus 189 ~~K~iw~l 196 (318)
.+|--|+-
T Consensus 63 ~aKeQWKe 70 (252)
T PF15556_consen 63 EAKEQWKE 70 (252)
T ss_pred HHHHHHHH
Confidence 35555553
No 153
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=44.23 E-value=3.4e+02 Score=28.16 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=17.7
Q ss_pred HHHhhHhHHHHHHHHH---HHHHhHHHHHHHHHHHHHHH
Q psy3983 229 KQQQRDKLQLEIAARE---KAEKKHQESVERLKQLEVEM 264 (318)
Q Consensus 229 ~~~er~~l~~e~~~~~---~~~~~~~~~~~~l~~~~~~~ 264 (318)
...+|+++..|+.++- ..|+...|-..|..+++.+-
T Consensus 302 s~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec 340 (442)
T PF06637_consen 302 SDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAEC 340 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777776432 22222333444444555443
No 154
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.94 E-value=6.1e+02 Score=29.95 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 270 DLMEAQEMIRRLEEQLKQLQAAKEE 294 (318)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (318)
.+..++.....+..++..++.....
T Consensus 355 ~~~~a~~~~e~~~~~~~~~~~r~~~ 379 (1353)
T TIGR02680 355 AIREAESRLEEERRRLDEEAGRLDD 379 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 155
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=43.76 E-value=2.5e+02 Score=25.52 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q psy3983 249 KHQESVERLKQLEVEMAKRDQDLMEAQ----EMIRRLEEQLKQLQAAKEEL 295 (318)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 295 (318)
++.++.++|.+++.+......+|.... +.+..+.++...+.+++.+-
T Consensus 104 eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anrw 154 (188)
T PF03962_consen 104 EREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANRW 154 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666664322 34555555555555555443
No 156
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=43.71 E-value=96 Score=29.08 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=30.6
Q ss_pred HHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeecCCc
Q psy3983 38 AMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDN 84 (318)
Q Consensus 38 Ae~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk 84 (318)
-.+++|+.+|+.+-+... ..+..+.|++++-||.|-..++.
T Consensus 87 ~lI~~ID~aQq~GkLP~v------~~~eevil~VSKyGiKvt~~d~~ 127 (200)
T PF10480_consen 87 ELINYIDSAQQDGKLPFV------PSDEEVILSVSKYGIKVTDNDQR 127 (200)
T ss_pred HHHHHHHHHhhcCcCCCC------CCCCeEEEEEeeccEEEeecCCc
Confidence 568999999986655432 33457779999999999886655
No 157
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=43.56 E-value=2.5e+02 Score=25.92 Aligned_cols=27 Identities=11% Similarity=0.110 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy3983 239 EIAAREKAEKKHQESVERLKQLEVEMA 265 (318)
Q Consensus 239 e~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (318)
-...+.+++....+.++.|.+...+..
T Consensus 96 Ae~~k~eAe~~~~~ye~~L~~Ar~eA~ 122 (204)
T PRK09174 96 AARLKQEADAAVAAYEQELAQARAKAH 122 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555544443
No 158
>PF08703 PLC-beta_C: PLC-beta C terminal; InterPro: IPR014815 This domain corresponds to the alpha helical C-terminal domain of phospholipase C beta. ; GO: 0004435 phosphatidylinositol phospholipase C activity, 0005509 calcium ion binding, 0016042 lipid catabolic process; PDB: 1JAD_A.
Probab=43.26 E-value=2.7e+02 Score=25.74 Aligned_cols=77 Identities=34% Similarity=0.443 Sum_probs=48.7
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhch
Q psy3983 233 RDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMI-RRLEEQLKQLQA-AKEELEARQTELQLELQPI 309 (318)
Q Consensus 233 r~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 309 (318)
+++-..|+..|+....-.++...-.+++.+...+.++.|.+.+..+ ..+++...++++ ...+.+++...+..++.+.
T Consensus 90 ~dK~e~er~KrEin~s~I~e~V~~ikrL~~~qekrqekL~~kh~e~lq~i~ee~~k~q~~l~~eye~k~~~L~~Ei~~~ 168 (185)
T PF08703_consen 90 KDKDEQERLKREINRSHIQEVVQEIKRLEEKQEKRQEKLEEKHEEVLQQIEEEEKKLQAELEQEYEEKMKRLPQEIRES 168 (185)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3455556666666666677777778888888888888888775544 345555554443 3345566666666666553
No 159
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=42.20 E-value=3.2e+02 Score=26.24 Aligned_cols=14 Identities=36% Similarity=0.470 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q psy3983 256 RLKQLEVEMAKRDQ 269 (318)
Q Consensus 256 ~l~~~~~~~~~~~~ 269 (318)
|...+++++...+.
T Consensus 104 r~~~le~el~~l~~ 117 (239)
T COG1579 104 RINSLEDELAELME 117 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 160
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=41.91 E-value=1.6e+02 Score=22.57 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
++.|+..+|....-.+..+.+..+.+.+...++..++..-..|..+.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777766655555554444444444444444444444444333
No 161
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=41.74 E-value=2.4e+02 Score=24.72 Aligned_cols=34 Identities=18% Similarity=0.111 Sum_probs=22.2
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKR 267 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (318)
..|..-..++.+|+..+.+.+.+|.+...+....
T Consensus 48 ~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~I 81 (167)
T PRK14475 48 AELDEAQRLREEAQALLADVKAEREEAERQAAAM 81 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445666677777777777777777666544
No 162
>PTZ00458 acyl CoA binding protein; Provisional
Probab=41.33 E-value=26 Score=28.63 Aligned_cols=24 Identities=38% Similarity=0.664 Sum_probs=21.4
Q ss_pred HHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 26 WWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 26 ~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
-|.++.|||.++|.-.|++++.+|
T Consensus 59 AW~~l~~ms~~eA~~~YI~l~~~l 82 (90)
T PTZ00458 59 AWKSIENLNREDAKKRYVEIVTEL 82 (90)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHH
Confidence 567889999999999999998875
No 163
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=41.19 E-value=2.5e+02 Score=24.73 Aligned_cols=33 Identities=18% Similarity=0.109 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3983 235 KLQLEIAAREKAEKKHQESVERLKQLEVEMAKR 267 (318)
Q Consensus 235 ~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (318)
.+..-...+++++....+.+.+|.+.+.+....
T Consensus 55 ~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i 87 (173)
T PRK13460 55 DINKASELRLEAEALLKDYEARLNSAKDEANAI 87 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566666666666666666555444
No 164
>KOG2391|consensus
Probab=41.11 E-value=2.3e+02 Score=28.84 Aligned_cols=48 Identities=31% Similarity=0.344 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3983 257 LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307 (318)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
|+..+|+.+.-.+.| .++...||.++..+++.-+-|.++..|+...+.
T Consensus 237 lkRt~EeL~~G~~kL---~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~ 284 (365)
T KOG2391|consen 237 LKRTEEELNIGKQKL---VAMKETLEQQLQSLQKNIDILKSKVREALEKAE 284 (365)
T ss_pred HHhhHHHHHhhHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc
Confidence 344444444333333 344555666666666666666666666444333
No 165
>PF14282 FlxA: FlxA-like protein
Probab=40.98 E-value=2.1e+02 Score=23.70 Aligned_cols=53 Identities=32% Similarity=0.449 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 251 QESVERLKQLEVEMAKRDQ----DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
..|.+++..+++++..... +-...+..+..|..++..++..-..|...+.+..
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~ 78 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQ 78 (106)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554433 2233445555566666666655555555554433
No 166
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=40.86 E-value=5.6e+02 Score=28.68 Aligned_cols=15 Identities=20% Similarity=0.335 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy3983 213 IDVQQMKAQAREEKN 227 (318)
Q Consensus 213 ~~vqqmkaqa~eek~ 227 (318)
+++-.-++.++++.+
T Consensus 39 pElkrer~~rkee~a 53 (775)
T PF10174_consen 39 PELKRERALRKEEAA 53 (775)
T ss_pred hhhHHHHHHHHHHHH
Confidence 444444444444333
No 167
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=40.77 E-value=1.5e+02 Score=27.23 Aligned_cols=82 Identities=26% Similarity=0.392 Sum_probs=41.5
Q ss_pred EcCCccchHHHHH---HhhhcccccccccCCCcHHHHHHHHHHHHHHHHHHH-hhHhHHHHHHHHHHHHHhHHHHHHHHH
Q psy3983 183 FAPRVRVNKRILA---LCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQ-QRDKLQLEIAAREKAEKKHQESVERLK 258 (318)
Q Consensus 183 ~~~~~~~~K~iw~---lcv~~H~Ff~~rr~~d~~~vqqmkaqa~eek~~~~~-er~~l~~e~~~~~~~~~~~~~~~~~l~ 258 (318)
+.++.++|--|-+ +|=|.-. ....-.=....|.++.++++..+.. -+.-+..-.+..+.+.+.+.+++.++.
T Consensus 88 ~i~~s~VnDGICDy~~CCDGSDE----~~~~C~N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~ 163 (176)
T PF12999_consen 88 YIPSSRVNDGICDYDICCDGSDE----SGGKCPNTCAELGKEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLE 163 (176)
T ss_pred eeehhhhcCCcCcccccCCCCCC----CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677778888 8877776 1111122334555555554332222 122233333444445555666666666
Q ss_pred HHHHHHHHHH
Q psy3983 259 QLEVEMAKRD 268 (318)
Q Consensus 259 ~~~~~~~~~~ 268 (318)
++++++...+
T Consensus 164 ~l~~ei~~~~ 173 (176)
T PF12999_consen 164 ELEKEIQAAK 173 (176)
T ss_pred HHHHHHHHHh
Confidence 6665555443
No 168
>KOG0962|consensus
Probab=40.75 E-value=3.8e+02 Score=31.79 Aligned_cols=35 Identities=31% Similarity=0.438 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 265 AKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
......+.+.++.+.-+...+..++++.+++.+++
T Consensus 895 ~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~ 929 (1294)
T KOG0962|consen 895 TRLDSKVKELLERIQPLKVELEEAQSEKEELKNER 929 (1294)
T ss_pred HHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHh
Confidence 33333344444444555555555555555555553
No 169
>PRK09039 hypothetical protein; Validated
Probab=40.73 E-value=3.8e+02 Score=26.63 Aligned_cols=44 Identities=14% Similarity=0.116 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 235 KLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMI 278 (318)
Q Consensus 235 ~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 278 (318)
.|..++..-.++.....-|..++..++.+....+.+|..++++.
T Consensus 124 ~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 124 ELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433333333333344444444444444444443333333
No 170
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=40.68 E-value=1.8e+02 Score=22.84 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTE 301 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
|+.+..++=+.....+.+..+..+.-..|.++...+.++-+.|...+..
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~ 57 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNA 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444433
No 171
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=40.42 E-value=2.7e+02 Score=24.93 Aligned_cols=42 Identities=33% Similarity=0.457 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 238 LEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQ 289 (318)
Q Consensus 238 ~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (318)
.|+..|..++. ++.++++..+.-.++|. ..+..|+++.++++
T Consensus 68 ~ek~~r~~~e~-------~l~~~Ed~~~~e~k~L~---~~v~~Le~e~r~L~ 109 (158)
T PF09744_consen 68 REKELRKQAEE-------ELLELEDQWRQERKDLQ---SQVEQLEEENRQLE 109 (158)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34444544444 44444444444444432 23334444444443
No 172
>KOG2891|consensus
Probab=40.36 E-value=4e+02 Score=26.81 Aligned_cols=14 Identities=21% Similarity=0.095 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhc
Q psy3983 35 REDAMMEYLKIAQD 48 (318)
Q Consensus 35 ~~eAe~efLkvaq~ 48 (318)
.++|+++-+.+.++
T Consensus 81 ifeael~n~gimkk 94 (445)
T KOG2891|consen 81 IFEAELENKGIMKK 94 (445)
T ss_pred EeeHhhhhhhHHHH
Confidence 45566655544443
No 173
>KOG2891|consensus
Probab=40.33 E-value=4e+02 Score=26.81 Aligned_cols=9 Identities=44% Similarity=0.593 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy3983 218 MKAQAREEK 226 (318)
Q Consensus 218 mkaqa~eek 226 (318)
+..+|.|+|
T Consensus 336 leqmaeeek 344 (445)
T KOG2891|consen 336 LEQMAEEEK 344 (445)
T ss_pred HHHHHHHHH
Confidence 333343333
No 174
>PF06409 NPIP: Nuclear pore complex interacting protein (NPIP); InterPro: IPR009443 This family consists of a series of primate specific nuclear pore complex interacting protein (NPIP) sequences. The function of this family is unknown but is well conserved from African apes to humans [].
Probab=40.30 E-value=3e+02 Score=26.77 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQ 289 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (318)
|.|..|-|++|...+|...-+.++..-..+++.+.++...+++
T Consensus 133 e~E~~EKErqlSeAeEn~kl~mkei~tY~~~fQ~~Qel~~RaE 175 (265)
T PF06409_consen 133 ECEHAEKERQLSEAEENGKLAMKEIHTYKQMFQRMQELQQRAE 175 (265)
T ss_pred HHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666777777666667777666677777666665554
No 175
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=39.40 E-value=2e+02 Score=28.67 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRL 281 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 281 (318)
.+|..|...|.+...+.++++.+-..+..+.++....|.........+
T Consensus 94 ~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l 141 (355)
T PF09766_consen 94 ARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSL 141 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456677777777777777777777777777666666664444333333
No 176
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=39.23 E-value=3.2e+02 Score=25.29 Aligned_cols=53 Identities=26% Similarity=0.395 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983 254 VERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
.++|.-+|.|--+....-.-++..|..||+++...+.....+..+..+++-.+
T Consensus 119 lekLe~LE~E~~rLt~~Q~~ae~Ki~~LE~KL~eEehqRKlvQdkAaqLQt~l 171 (178)
T PF14073_consen 119 LEKLEKLEKEYLRLTATQSLAETKIKELEEKLQEEEHQRKLVQDKAAQLQTGL 171 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 35677788777777666666889999999999999998888888887776544
No 177
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=39.13 E-value=2.5e+02 Score=24.72 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=7.9
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q psy3983 248 KKHQESVERLKQLEVEMAKR 267 (318)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~ 267 (318)
..+.+..+.+.+++.....+
T Consensus 61 ~~~~eA~~~~~e~e~~l~~a 80 (173)
T PRK13460 61 ELRLEAEALLKDYEARLNSA 80 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444443333
No 178
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=38.67 E-value=3.3e+02 Score=25.41 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=13.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy3983 240 IAAREKAEKKHQESVERLKQLEVEMA 265 (318)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (318)
...+.+|+....+.+.+|...+.+..
T Consensus 49 e~~~~eA~~~~~e~e~~l~~a~~ea~ 74 (246)
T TIGR03321 49 DTKKREAEQERREYEEKNEELDQQRE 74 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556655555554443
No 179
>KOG4661|consensus
Probab=38.52 E-value=3.9e+02 Score=29.39 Aligned_cols=14 Identities=36% Similarity=0.268 Sum_probs=6.0
Q ss_pred HhhHhHHHHHHHHH
Q psy3983 231 QQRDKLQLEIAARE 244 (318)
Q Consensus 231 ~er~~l~~e~~~~~ 244 (318)
.++++...++..|+
T Consensus 609 ~sfdk~kE~Rr~Re 622 (940)
T KOG4661|consen 609 RSFDKRKEERRRRE 622 (940)
T ss_pred hhHHhhhhHHHhHH
Confidence 34444444444333
No 180
>KOG2072|consensus
Probab=38.45 E-value=4.1e+02 Score=30.31 Aligned_cols=8 Identities=50% Similarity=0.700 Sum_probs=2.8
Q ss_pred HHHHHHHH
Q psy3983 295 LEARQTEL 302 (318)
Q Consensus 295 ~~~~~~~~ 302 (318)
|++...++
T Consensus 675 l~Ke~kEl 682 (988)
T KOG2072|consen 675 LEKERKEL 682 (988)
T ss_pred HHHHHHHH
Confidence 33333333
No 181
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=38.21 E-value=78 Score=26.50 Aligned_cols=36 Identities=17% Similarity=0.313 Sum_probs=27.7
Q ss_pred cCccCccccccccccceEEEEeCCC---CCCceEEEcCC
Q psy3983 151 IGFPWSEIRNISFNDRKFIIKPIDK---KAPDFVFFAPR 186 (318)
Q Consensus 151 ~~f~W~~I~~lsf~~kkF~Ikp~dk---k~~~~~F~~~~ 186 (318)
...|+..|++-.+++..|.++..-. ..-.|.|.|+.
T Consensus 44 ~~wpl~~lRRyG~~~~~FsfEaGRrc~tG~G~f~f~t~~ 82 (104)
T cd00824 44 VVWPLMFLRRYGYDSNLFSFEAGRRCVTGEGIFTFQTDR 82 (104)
T ss_pred EEeehHHeeecccCCCEEEEEccCcCCCCCCEEEEEcCC
Confidence 4667779999999999999998422 22469999983
No 182
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=38.19 E-value=4.1e+02 Score=26.26 Aligned_cols=55 Identities=25% Similarity=0.420 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy3983 257 LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311 (318)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (318)
|..+.++.+....+++.....+..+++++..+...-+...++..++..+++.++.
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555666666666666666666666666666665555443
No 183
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=38.17 E-value=3.2e+02 Score=25.09 Aligned_cols=82 Identities=20% Similarity=0.285 Sum_probs=0.0
Q ss_pred hHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH----HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 233 RDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKR----DQDLMEAQ--------EMIRRLEEQLKQLQAAKEELEARQT 300 (318)
Q Consensus 233 r~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
|..+..-.......+++..++..+....+.....+ +++|.+.- +.+..|+.+...+......|.....
T Consensus 44 r~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~ 123 (219)
T TIGR02977 44 RTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIA 123 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhchhhhcc
Q psy3983 301 ELQLELQPIRNQSN 314 (318)
Q Consensus 301 ~~~~~~~~~~~~~~ 314 (318)
+++..++..+...+
T Consensus 124 ~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 124 KLQAKLAEARARQK 137 (219)
T ss_pred HHHHHHHHHHHHHH
No 184
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=37.83 E-value=2.6e+02 Score=23.83 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=25.3
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQ 269 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 269 (318)
..+..-...+++++....+.+.+|.+...+.....+
T Consensus 42 ~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~ 77 (156)
T PRK05759 42 DGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIE 77 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666777888888888888888777765533
No 185
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=37.58 E-value=3.5e+02 Score=25.34 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=9.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHH
Q psy3983 248 KKHQESVERLKQLEVEMAKRD 268 (318)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~ 268 (318)
.+.++|..-+..++++.++..
T Consensus 67 eEledLk~~~~~lEE~~~~L~ 87 (193)
T PF14662_consen 67 EELEDLKTLAKSLEEENRSLL 87 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444433
No 186
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=37.37 E-value=3.9e+02 Score=28.59 Aligned_cols=62 Identities=19% Similarity=0.250 Sum_probs=26.3
Q ss_pred ccccccCCCcHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy3983 203 LYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEM 264 (318)
Q Consensus 203 Ff~~rr~~d~~~vqqmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (318)
+|+.|..-=+-..|.+...|.--.+-=+.=..+|......++....+..+...++..++||.
T Consensus 417 ~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 417 YYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555444444555554444333222222223333333334344444444444555555544
No 187
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=37.37 E-value=2.5e+02 Score=24.88 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhchhhhcccc
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ-TELQLELQPIRNQSNLN 316 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 316 (318)
|.+|=..+......+.+...++++...+.++++..+..++.++-... .+++.....+..+...+
T Consensus 51 l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~e 115 (167)
T PRK08475 51 YKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDD 115 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 188
>KOG0612|consensus
Probab=37.26 E-value=7.3e+02 Score=29.51 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=13.0
Q ss_pred CCCCchh----hHhhcCCChHHH
Q psy3983 1 MSVSPLR----VMDQHKMSPSEW 19 (318)
Q Consensus 1 ~~~~p~~----~~~q~~~~~~~~ 19 (318)
|+|.|-+ .|..|+.-|+.|
T Consensus 154 MdY~pGGDlltLlSk~~~~pE~~ 176 (1317)
T KOG0612|consen 154 MDYMPGGDLLTLLSKFDRLPEDW 176 (1317)
T ss_pred EecccCchHHHHHhhcCCChHHH
Confidence 7788864 788888445543
No 189
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=37.10 E-value=5.2e+02 Score=27.24 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=41.8
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEM----------IRRLEEQLKQLQAAKE 293 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 293 (318)
+.+..|..++...++....+...|.+.++.......++....+. ++.++++++.+.+.-.
T Consensus 296 d~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~ 365 (569)
T PRK04778 296 DILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYD 365 (569)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888887877777777777666655555 5555555555444433
No 190
>KOG4657|consensus
Probab=36.77 E-value=4e+02 Score=25.78 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLE 305 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (318)
|++-|.+.+.++.+.++-+.+....-..++.+.+-.+++-+.|.+...-+.+|
T Consensus 63 l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE 115 (246)
T KOG4657|consen 63 LKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEE 115 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333334444444444444444444444444333333
No 191
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=36.75 E-value=2.9e+02 Score=28.53 Aligned_cols=15 Identities=33% Similarity=0.623 Sum_probs=7.9
Q ss_pred CCcHHHHHHHHHHHH
Q psy3983 210 PDTIDVQQMKAQARE 224 (318)
Q Consensus 210 ~d~~~vqqmkaqa~e 224 (318)
+++.+++..+++-++
T Consensus 68 ~~~~~~~~l~~~l~~ 82 (525)
T TIGR02231 68 PDPERLAELRKQIRE 82 (525)
T ss_pred CCcHHHHHHHHHHHH
Confidence 355566665554443
No 192
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=36.72 E-value=2.2e+02 Score=24.78 Aligned_cols=48 Identities=27% Similarity=0.429 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEAR 298 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
......|.-++++..+....|..-.+.+..|+...+.++.+.++.+.+
T Consensus 37 ~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 37 AANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556667888888888888877888888887777777766666555
No 193
>KOG1003|consensus
Probab=36.48 E-value=2.2e+02 Score=26.85 Aligned_cols=67 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (318)
|+.....+.+|+..+++++.++++.|..+++...+++...........-++.+....++.+..++.+
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~q 68 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQ 68 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHH
No 194
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=36.35 E-value=5.8e+02 Score=27.53 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=44.0
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhhHhHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 208 RKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAA-REKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLK 286 (318)
Q Consensus 208 r~~d~~~vqqmkaqa~eek~~~~~er~~l~~e~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (318)
-.++.+.|+.+++|-.+-++....|..++..-... -..+.+....+..++.+++.+... +...+....+|+-+..
T Consensus 311 y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~----~~~~~~e~~~L~Re~~ 386 (754)
T TIGR01005 311 MLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQ----AGEQQVDLDALQRDAA 386 (754)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----CcHhHHHHHHHHHHHH
Confidence 35777778777777766555544444443322111 111222233344444444433322 2233344445555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3983 287 QLQAAKEELEARQTELQL 304 (318)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~ 304 (318)
..+.--+.|..+..++..
T Consensus 387 ~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 387 AKRQLYESYLTNYRQAAS 404 (754)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555544443
No 195
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=36.16 E-value=3.8e+02 Score=25.32 Aligned_cols=48 Identities=27% Similarity=0.450 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 252 ESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
.++..+..++.+...+.+.+......+..|+.+..++......+.++.
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444455555544444444444443
No 196
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=36.08 E-value=4.5e+02 Score=26.21 Aligned_cols=55 Identities=31% Similarity=0.396 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983 252 ESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
+...++..+.++..+..++...+++.|..|..++-.++.....+-....++.+.+
T Consensus 210 ~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 210 EANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344667888888888888888999888888887777766665555544444433
No 197
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=36.01 E-value=2.3e+02 Score=24.77 Aligned_cols=12 Identities=17% Similarity=0.526 Sum_probs=6.1
Q ss_pred CCcHHHHHHHHH
Q psy3983 210 PDTIDVQQMKAQ 221 (318)
Q Consensus 210 ~d~~~vqqmkaq 221 (318)
++.-++..|.++
T Consensus 69 ~s~eel~~ld~e 80 (169)
T PF07106_consen 69 PSPEELAELDAE 80 (169)
T ss_pred CCchhHHHHHHH
Confidence 344455555544
No 198
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=36.00 E-value=5e+02 Score=26.65 Aligned_cols=19 Identities=32% Similarity=0.414 Sum_probs=10.0
Q ss_pred HHHHHHH---HHHHHHHHhhHh
Q psy3983 217 QMKAQAR---EEKNAKQQQRDK 235 (318)
Q Consensus 217 qmkaqa~---eek~~~~~er~~ 235 (318)
|+|+.|- +.|.||..|.+.
T Consensus 64 qlk~aa~~llq~kirk~~e~~e 85 (401)
T PF06785_consen 64 QLKTAAGQLLQTKIRKITEKDE 85 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhccH
Confidence 4554442 455666666543
No 199
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=35.79 E-value=1.1e+02 Score=24.77 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=30.8
Q ss_pred cCccCccccccccccceEEEEeCCC---CCCceEEEcCCccchHHHH
Q psy3983 151 IGFPWSEIRNISFNDRKFIIKPIDK---KAPDFVFFAPRVRVNKRIL 194 (318)
Q Consensus 151 ~~f~W~~I~~lsf~~kkF~Ikp~dk---k~~~~~F~~~~~~~~K~iw 194 (318)
..+|+..|++-.+.++.|.++..-. ....|.|.+++ +..|.
T Consensus 45 ~~Wpl~~lRryG~~~~~F~fEaGRrc~tG~G~f~f~t~~---a~~I~ 88 (100)
T PF02174_consen 45 LEWPLRYLRRYGRDDGIFSFEAGRRCPTGEGLFWFQTPD---AEEIF 88 (100)
T ss_dssp EEEEGGGEEEEEEETTEEEEEESTTSTTCSEEEEEEEST---HHHHH
T ss_pred EEEEhHHhhhhccCCCEEEEEECCcCCCCCcEEEEEeCC---HHHHH
Confidence 4667789999999999999998522 22369999998 44444
No 200
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=35.75 E-value=3.7e+02 Score=28.66 Aligned_cols=33 Identities=21% Similarity=0.145 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy3983 277 MIRRLEEQLKQLQAAKEELEARQTELQLELQPI 309 (318)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (318)
.+..+.+++..++++.+++..+-.++++++..+
T Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 599 ELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556655555555555555554443
No 201
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=35.67 E-value=3e+02 Score=24.46 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=21.5
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKR 267 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (318)
..+..-..++++|+....+.+.+|.....+....
T Consensus 62 ~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~i 95 (184)
T CHL00019 62 NTIRNSEERREEAIEKLEKARARLRQAELEADEI 95 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445556777777777777777766655444
No 202
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=35.37 E-value=4.7e+02 Score=29.04 Aligned_cols=84 Identities=24% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983 227 NAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 227 ~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
..|..-..-..+|..+=.+-.-.-..+..++..++.+.+.....+...+....+|......+.++.+.++..+..+..++
T Consensus 6 ~~~~~~~~g~~~Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ 85 (717)
T PF09730_consen 6 NHKKVAKDGEEREESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEI 85 (717)
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hchh
Q psy3983 307 QPIR 310 (318)
Q Consensus 307 ~~~~ 310 (318)
..++
T Consensus 86 ke~K 89 (717)
T PF09730_consen 86 KEYK 89 (717)
T ss_pred HHHH
No 203
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=35.35 E-value=3.6e+02 Score=24.79 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3983 258 KQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP 308 (318)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (318)
..++.++...+..+.+.++....+.++......+..++......+.+++..
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555444444443
No 204
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=35.33 E-value=3.4e+02 Score=24.53 Aligned_cols=50 Identities=26% Similarity=0.494 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
+..++..+..++................+..|+.++..++.....|.++.
T Consensus 93 k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~ 142 (221)
T PF04012_consen 93 KADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARE 142 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555554555555555555555555555555544
No 205
>COG1422 Predicted membrane protein [Function unknown]
Probab=35.28 E-value=1.2e+02 Score=28.41 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy3983 255 ERLKQLEVEMAKR 267 (318)
Q Consensus 255 ~~l~~~~~~~~~~ 267 (318)
++++.++++.++|
T Consensus 79 k~m~efq~e~~eA 91 (201)
T COG1422 79 KMMKEFQKEFREA 91 (201)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444443333
No 206
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=35.25 E-value=3.1e+02 Score=24.11 Aligned_cols=33 Identities=21% Similarity=0.246 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3983 235 KLQLEIAAREKAEKKHQESVERLKQLEVEMAKR 267 (318)
Q Consensus 235 ~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (318)
.+..-...+++|+....+.+.+|...+.+....
T Consensus 57 ~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~i 89 (175)
T PRK14472 57 SIDRAHSAKDEAEAILRKNRELLAKADAEADKI 89 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455556666666666666655554433
No 207
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=35.20 E-value=2.7e+02 Score=23.31 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhchhhhcc
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ-TELQLELQPIRNQSN 314 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 314 (318)
|.+|=..+......+.....++.+...+.++++..++.++..+-... .+++.+...+....+
T Consensus 34 l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~ 96 (140)
T PRK07353 34 VEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQ 96 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 208
>KOG0995|consensus
Probab=34.93 E-value=6.2e+02 Score=27.47 Aligned_cols=150 Identities=15% Similarity=0.232 Sum_probs=65.4
Q ss_pred CCCCCC--CcccccccccCccCcccccc--------ccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccc
Q psy3983 136 RVRFPP--GPNCLLTPKIGFPWSEIRNI--------SFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYM 205 (318)
Q Consensus 136 rl~C~~--~~a~lL~p~~~f~W~~I~~l--------sf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~ 205 (318)
.|.||. ....+.++.....||.|-.+ .++..--.+.|++.. .+.+-.++|.++...+..-.-||
T Consensus 136 ~L~YPf~~siSs~~a~gspH~WP~iL~mlhWlvdlI~~~t~~v~~~~l~q~------~~ed~~m~k~f~dy~~~~Y~~fl 209 (581)
T KOG0995|consen 136 NLKYPFLLSISSLQAAGSPHNWPHILGMLHWLVDLIRINTALVEDSPLEQE------EAEDKTMNKLFFDYTIRSYTSFL 209 (581)
T ss_pred hCCCCcccchhhhccCCCCCccHHHHHHHHHHHHHHHHhHHHhhccchhcc------chHHHHHHHHHHHHHHHHHHHHh
Confidence 455554 33355666667889877543 222222222233222 22334456666675555555555
Q ss_pred cccCCCcHHHHHHHHHHHHHHH--HHHHhh-----HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 206 RRRKPDTIDVQQMKAQAREEKN--AKQQQR-----DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMI 278 (318)
Q Consensus 206 ~rr~~d~~~vqqmkaqa~eek~--~~~~er-----~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 278 (318)
.---.++.--++.|..-+.... ..++++ ..|..-.+.+++-....+-++++-..++++..+.+..+......-
T Consensus 210 ~g~d~~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~ 289 (581)
T KOG0995|consen 210 KGEDNSSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKK 289 (581)
T ss_pred ccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence 4333334444555554444433 122222 112222223333333334444444445555555544444333333
Q ss_pred HHHHHHHHHHHHH
Q psy3983 279 RRLEEQLKQLQAA 291 (318)
Q Consensus 279 ~~~~~~~~~~~~~ 291 (318)
+.++..++++..+
T Consensus 290 ~~~~~~l~~l~~E 302 (581)
T KOG0995|consen 290 QHMEKKLEMLKSE 302 (581)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 209
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=34.81 E-value=3.3e+02 Score=24.20 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3983 235 KLQLEIAAREKAEKKHQESVERLKQLEVEMAKR 267 (318)
Q Consensus 235 ~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (318)
.+..-...+++++....+.+.+|.+...+.+..
T Consensus 66 ~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~I 98 (184)
T PRK13455 66 ELEEARALREEAQTLLASYERKQREVQEQADRI 98 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555666666666666666666555544
No 210
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=34.63 E-value=88 Score=23.79 Aligned_cols=19 Identities=26% Similarity=0.319 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDL 271 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~ 271 (318)
+|+||..+|...+.+++.+
T Consensus 30 iEqRLa~LE~rL~~ae~ra 48 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRA 48 (60)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 211
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=34.62 E-value=2.6e+02 Score=25.65 Aligned_cols=34 Identities=6% Similarity=0.102 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKR 267 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (318)
..+..-..++++|+....+++.+|.+...+.+..
T Consensus 86 ~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~I 119 (205)
T PRK06231 86 AEINQANELKQQAQQLLENAKQRHENALAQAKEI 119 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667778888888888888877766554
No 212
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=34.60 E-value=3.4e+02 Score=28.96 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=32.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH----H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 245 KAEKKHQESVERLKQLEVEMAKR----D---QDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303 (318)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
..|++.++++.++..++.++... + ..+.+..+....+++++..+.++=++|+....+++
T Consensus 567 ~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 567 RLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555666666666666665432 0 13555555556666666666666666665554444
No 213
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=33.94 E-value=3.1e+02 Score=23.80 Aligned_cols=35 Identities=14% Similarity=0.055 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRD 268 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (318)
..+..-...+++++....+.+++|.+...+....-
T Consensus 60 ~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii 94 (156)
T CHL00118 60 KNLTKASEILAKANELTKQYEQELSKARKEAQLEI 94 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566677777788888887777665543
No 214
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.91 E-value=4e+02 Score=26.09 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
..++...+..++.+....+..+.+.+..+..+.++..+.+++-..|+.+..++.
T Consensus 40 l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~ 93 (265)
T COG3883 40 LSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK 93 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444333
No 215
>PRK11281 hypothetical protein; Provisional
Probab=33.89 E-value=4.9e+02 Score=30.31 Aligned_cols=41 Identities=27% Similarity=0.281 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAA 291 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (318)
.+++.+|.+.+.+.+..+.+|......+..+..+-.++|..
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~ 164 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAA 164 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 44666666666666666666655544444444444433333
No 216
>KOG0994|consensus
Probab=33.76 E-value=8.7e+02 Score=29.17 Aligned_cols=13 Identities=15% Similarity=0.501 Sum_probs=5.9
Q ss_pred HHHHHHhhchhhh
Q psy3983 300 TELQLELQPIRNQ 312 (318)
Q Consensus 300 ~~~~~~~~~~~~~ 312 (318)
.+++.-|+.|++.
T Consensus 1622 ~eL~~~~e~lk~~ 1634 (1758)
T KOG0994|consen 1622 GELETRMEELKHK 1634 (1758)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444443
No 217
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=33.73 E-value=2.7e+02 Score=30.09 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 259 QLEVEMAKRDQDLMEAQEMIRRLEEQLK 286 (318)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (318)
.+..++.+..+++.+......+++++++
T Consensus 353 ~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 353 MLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 218
>PTZ00491 major vault protein; Provisional
Probab=33.26 E-value=2.4e+02 Score=31.91 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhhHhHHHHH
Q psy3983 222 AREEKNAKQQQRDKLQLEI 240 (318)
Q Consensus 222 a~eek~~~~~er~~l~~e~ 240 (318)
++|..|+-..||+++.-+.
T Consensus 674 ~~eQea~g~Lerqk~~d~~ 692 (850)
T PTZ00491 674 LLEQEARGRLERQKMHDKA 692 (850)
T ss_pred HHHHHhhchhHHHhhhhHH
Confidence 3444455555666655443
No 219
>PRK04406 hypothetical protein; Provisional
Probab=32.97 E-value=2.4e+02 Score=22.17 Aligned_cols=53 Identities=23% Similarity=0.306 Sum_probs=30.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
|+....++.|+..+|....- ++.+|..|.+.+-..+.+...|.+....+...+
T Consensus 3 ~~~~~~le~Ri~~LE~~lAf-------QE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAF-------QEQTIEELNDALSQQQLLITKMQDQMKYVVGKV 55 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455688888888865554 444555555555555555555555444443333
No 220
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=32.94 E-value=3.2e+02 Score=24.08 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=9.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q psy3983 246 AEKKHQESVERLKQLEVEMAKR 267 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~ 267 (318)
|++...+..+.+.+++.+...+
T Consensus 61 Ae~~~~eA~~~~~e~e~~L~~a 82 (175)
T PRK14472 61 AHSAKDEAEAILRKNRELLAKA 82 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444333
No 221
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=32.71 E-value=3e+02 Score=25.27 Aligned_cols=7 Identities=14% Similarity=0.263 Sum_probs=4.7
Q ss_pred eEEEcCC
Q psy3983 180 FVFFAPR 186 (318)
Q Consensus 180 ~~F~~~~ 186 (318)
-.|||.+
T Consensus 75 ~~FyC~N 81 (176)
T PF12999_consen 75 GKFYCEN 81 (176)
T ss_pred ceEeecc
Confidence 3677766
No 222
>KOG0288|consensus
Probab=32.68 E-value=6.1e+02 Score=26.66 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 249 KHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296 (318)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
...+.|-.|..+++|....++++-...-+...+-.+..+++.....+.
T Consensus 49 ~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~ 96 (459)
T KOG0288|consen 49 KLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSL 96 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666677888888887777766544444444444444444333333
No 223
>KOG4673|consensus
Probab=32.59 E-value=5.1e+02 Score=29.11 Aligned_cols=56 Identities=18% Similarity=0.323 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy3983 256 RLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311 (318)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (318)
++.-+..|.....+.|.....++..+..+...+|++...|+.+...++.+.++++.
T Consensus 705 q~sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k~ 760 (961)
T KOG4673|consen 705 QLSLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELKR 760 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555566666666677777777777777777777777666666666544
No 224
>KOG0996|consensus
Probab=32.57 E-value=8.7e+02 Score=28.81 Aligned_cols=15 Identities=20% Similarity=0.047 Sum_probs=9.3
Q ss_pred HHHhhhccccccccc
Q psy3983 194 LALCMGNHELYMRRR 208 (318)
Q Consensus 194 w~lcv~~H~Ff~~rr 208 (318)
|+--..+|-||..+.
T Consensus 320 ~~~~~~q~~~~~~~~ 334 (1293)
T KOG0996|consen 320 KKNKLCQYILYESRA 334 (1293)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666777776433
No 225
>KOG3859|consensus
Probab=32.51 E-value=5.5e+02 Score=26.09 Aligned_cols=27 Identities=30% Similarity=0.447 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQE 276 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~ 276 (318)
++...+|++.-+.+++.+..+|...-+
T Consensus 343 rqmFvqrvkekE~elke~Ekel~~kf~ 369 (406)
T KOG3859|consen 343 RQMFVQRVKEKEAELKEAEKELHEKFD 369 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777777777777655443
No 226
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=32.43 E-value=2.2e+02 Score=24.06 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQ 289 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (318)
+.+++..++.......+++...++.+..+...+.++.
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~ 135 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQ 135 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444333
No 227
>KOG4643|consensus
Probab=32.16 E-value=8.9e+02 Score=28.39 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=50.7
Q ss_pred hHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhHhHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy3983 190 NKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEI-AAREKAEKKHQESVERLKQLEVEMAKRD 268 (318)
Q Consensus 190 ~K~iw~lcv~~H~Ff~~rr~~d~~~vqqmkaqa~eek~~~~~er~~l~~e~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 268 (318)
+-+++++-+.+|..+ -.+++.++--=|+..+|+.+-.+..+-. ..-+..|..+.++-.++.++++..+.+.
T Consensus 371 s~ralkllLEnrrlt--------~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~ 442 (1195)
T KOG4643|consen 371 SDRALKLLLENRRLT--------GTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQ 442 (1195)
T ss_pred hHHHHHHHHHhHHHH--------HHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999887 4677777778888888887665533211 1123344455556666666666666665
Q ss_pred HHHHHHHHHH
Q psy3983 269 QDLMEAQEMI 278 (318)
Q Consensus 269 ~~~~~~~~~~ 278 (318)
.++...++++
T Consensus 443 ~E~ekl~~e~ 452 (1195)
T KOG4643|consen 443 FELEKLLEET 452 (1195)
T ss_pred HHHHHHHHHH
Confidence 5554444443
No 228
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=32.12 E-value=2.3e+02 Score=26.57 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=4.9
Q ss_pred HHhhHhHHHHHH
Q psy3983 230 QQQRDKLQLEIA 241 (318)
Q Consensus 230 ~~er~~l~~e~~ 241 (318)
.+++-.|++|..
T Consensus 36 m~~~g~lm~evN 47 (195)
T PF10226_consen 36 MVEHGRLMKEVN 47 (195)
T ss_pred HHHHHhHHHHHH
Confidence 334444444433
No 229
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=32.11 E-value=4e+02 Score=24.44 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 256 RLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEEL 295 (318)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (318)
.+..+..+.++..+-|..+++....|..++..-+..+..|
T Consensus 49 ~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L 88 (201)
T PF13851_consen 49 LMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSL 88 (201)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555555444443
No 230
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=31.94 E-value=3.7e+02 Score=23.87 Aligned_cols=50 Identities=26% Similarity=0.384 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
.++|..|+..++.--+++.++|-+++.-...|..++.-+-.++..|+.-.
T Consensus 8 iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeil 57 (134)
T PF15233_consen 8 IEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEIL 57 (134)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45566666667666666677776666666666666666666655554433
No 231
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=31.77 E-value=2.5e+02 Score=21.87 Aligned_cols=56 Identities=16% Similarity=0.309 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLE 305 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (318)
...+..++...++.|...-+.+.+..+.+..|+.+-..+...+....+....+...
T Consensus 5 l~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~ 60 (89)
T PF00957_consen 5 LEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRK 60 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44566777788888888877888888888888888888888888887776665543
No 232
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=31.75 E-value=3.6e+02 Score=23.72 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3983 236 LQLEIAAREKAEKKHQESVERLKQLEVEMAKR 267 (318)
Q Consensus 236 l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (318)
|..-...+++++....+.+.+|.....+....
T Consensus 59 l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~i 90 (174)
T PRK07352 59 LKEAEERLRQAAQALAEAQQKLAQAQQEAERI 90 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555666666666666555544433
No 233
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=31.73 E-value=3.4e+02 Score=25.29 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=11.1
Q ss_pred ceEEEcCCccchHHHHHHh
Q psy3983 179 DFVFFAPRVRVNKRILALC 197 (318)
Q Consensus 179 ~~~F~~~~~~~~K~iw~lc 197 (318)
.+++..|.......+=.+.
T Consensus 97 ~ltiRVP~~~~~~~l~~l~ 115 (262)
T PF14257_consen 97 SLTIRVPADKFDSFLDELS 115 (262)
T ss_pred EEEEEECHHHHHHHHHHHh
Confidence 4666666655555555554
No 234
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=31.45 E-value=3e+02 Score=25.70 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=14.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy3983 245 KAEKKHQESVERLKQLEVEMAKRDQD 270 (318)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~~ 270 (318)
.|++.+.+.+..+.+++..+..++.+
T Consensus 47 ~Ae~~~~eA~~~~~e~e~~l~~a~~e 72 (246)
T TIGR03321 47 DADTKKREAEQERREYEEKNEELDQQ 72 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666655555433
No 235
>KOG0993|consensus
Probab=31.37 E-value=5.1e+02 Score=27.34 Aligned_cols=73 Identities=25% Similarity=0.308 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQ------LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
+....-.+-++++|++...+++.|.. ++.+|.++.++-....+-..-.+.+...+...-.+-+.+..+++.+.
T Consensus 107 qertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~Ed~eKlrelv~pmekeI~elk~kl~~aE~~i~El~k~~ 185 (542)
T KOG0993|consen 107 QERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKEDEEKLRELVTPMEKEINELKKKLAKAEQRIDELSKAK 185 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHhhh
No 236
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=30.62 E-value=2.6e+02 Score=21.79 Aligned_cols=54 Identities=26% Similarity=0.412 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 257 LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
+.++.+|-.+.-..-......|..|..+.+..+.....|..+...++.++..++
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433322234455555555555555555555555555555444443
No 237
>KOG4360|consensus
Probab=30.56 E-value=7.2e+02 Score=26.88 Aligned_cols=50 Identities=22% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcc
Q psy3983 265 AKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314 (318)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (318)
....+-|..+...-+.+..+++.++..-+++.+...|++++++.+|...|
T Consensus 257 eel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs~~~ 306 (596)
T KOG4360|consen 257 EELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRSCDA 306 (596)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 33444455555566677777788888888888888899999998887655
No 238
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=30.37 E-value=3.2e+02 Score=25.92 Aligned_cols=20 Identities=20% Similarity=0.302 Sum_probs=8.1
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q psy3983 246 AEKKHQESVERLKQLEVEMA 265 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~ 265 (318)
|++.+.+.++.+.+++.+..
T Consensus 48 Ae~~~~eA~~~~~e~e~~l~ 67 (250)
T PRK14474 48 AEQRQQEAGQEAERYRQKQQ 67 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 239
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=29.93 E-value=3.7e+02 Score=23.86 Aligned_cols=29 Identities=17% Similarity=0.147 Sum_probs=16.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 243 REKAEKKHQESVERLKQLEVEMAKRDQDL 271 (318)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 271 (318)
-+.|++.+.+.++.+.+++.+...++.+-
T Consensus 67 l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea 95 (184)
T PRK13455 67 LEEARALREEAQTLLASYERKQREVQEQA 95 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666665554443
No 240
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.90 E-value=5.5e+02 Score=25.33 Aligned_cols=54 Identities=28% Similarity=0.396 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
..+.+.|.....+.......+.+.++....+...++...+.+.++.....+++.
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555555554444
No 241
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=29.83 E-value=5.5e+02 Score=25.23 Aligned_cols=55 Identities=18% Similarity=0.392 Sum_probs=28.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQT 300 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
++.+++...+.|...+.|+....++|.+++....++.++.......-.+|+.+.+
T Consensus 191 ~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~ 245 (269)
T PF05278_consen 191 REEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMEST 245 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666655555555555444433333333333333
No 242
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=29.73 E-value=3.5e+02 Score=22.98 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTEL 302 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (318)
.++=.++.+++..+...-.++.+....+..|.++...++-|-..|..+..++
T Consensus 4 ~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 4 KEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555667777777777777777777777777777777777766666666554
No 243
>KOG0971|consensus
Probab=29.65 E-value=5.3e+02 Score=29.88 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=5.1
Q ss_pred EEcCCccchHH
Q psy3983 182 FFAPRVRVNKR 192 (318)
Q Consensus 182 F~~~~~~~~K~ 192 (318)
|-+|.+..+-.
T Consensus 205 ~~~P~~Tta~a 215 (1243)
T KOG0971|consen 205 IPTPVLTTAGA 215 (1243)
T ss_pred CCCCCCCCccc
Confidence 44454444443
No 244
>KOG3859|consensus
Probab=29.53 E-value=4.2e+02 Score=26.91 Aligned_cols=60 Identities=28% Similarity=0.357 Sum_probs=30.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 242 AREKAEKKHQESVERLKQLEVEMAKRDQDLME-AQEMIRRLEEQLKQLQAAKEELEARQTE 301 (318)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
.|+.--+...+-+..|+..+.+....-+.|.+ -++....|+++.++++++...+..+.+.
T Consensus 342 ~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~eEk~kle~~rr~Leee~~~f~~rk~~ 402 (406)
T KOG3859|consen 342 MRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQEEKKKLEEKRKQLEEEVNAFQRRKTA 402 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444333332 2555666666666666666666655543
No 245
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=29.51 E-value=6.4e+02 Score=25.93 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=13.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q psy3983 241 AAREKAEKKHQESVERLKQLEVEMA 265 (318)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (318)
.++.+++..+.++++.|.+...+.+
T Consensus 46 ~a~~ea~~~~~~~e~~L~~Ak~ea~ 70 (445)
T PRK13428 46 TAADRLAEADQAHTKAVEDAKAEAA 70 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554443
No 246
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=29.36 E-value=3.8e+02 Score=23.24 Aligned_cols=32 Identities=19% Similarity=0.191 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy3983 235 KLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266 (318)
Q Consensus 235 ~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (318)
.+..-..++++++....+.+++|.....+.+.
T Consensus 47 ~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ 78 (164)
T PRK14471 47 ALASAEEARKEMQNLQADNERLLKEARAERDA 78 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445666666666666666666555433
No 247
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=29.27 E-value=4.1e+02 Score=23.62 Aligned_cols=7 Identities=29% Similarity=0.382 Sum_probs=3.5
Q ss_pred ceEEEcC
Q psy3983 179 DFVFFAP 185 (318)
Q Consensus 179 ~~~F~~~ 185 (318)
.|+|.++
T Consensus 19 ~f~~n~~ 25 (184)
T CHL00019 19 SFGFNTD 25 (184)
T ss_pred ccCCcch
Confidence 3555553
No 248
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=29.26 E-value=5.9e+02 Score=26.70 Aligned_cols=58 Identities=26% Similarity=0.275 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
..++...|.++..++..+......+++.+..+..+..+........+.+...+..++.
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~e 424 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAE 424 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888888888888888888888888888877777666666655544444433
No 249
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=29.15 E-value=2.6e+02 Score=22.13 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=18.7
Q ss_pred CCCCeEEEeecCCceeeeecCCc
Q psy3983 62 KKGTELWLGVDALGLNIYEKEDN 84 (318)
Q Consensus 62 ~kg~~~WLgl~k~Gi~Iy~~~dk 84 (318)
..+.+.+|.++..||.|.....+
T Consensus 39 ~~~~~v~l~vs~~gv~l~d~~~~ 61 (123)
T cd00934 39 EKGQKVILSVSSDGVKLIDPKTK 61 (123)
T ss_pred cCCCEEEEEEEcCcEEEEeCCCC
Confidence 45789999999999999876543
No 250
>KOG0612|consensus
Probab=28.92 E-value=5.6e+02 Score=30.38 Aligned_cols=36 Identities=25% Similarity=0.415 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy3983 276 EMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (318)
....+++..+.....+.+.+++...+.+.+..-|++
T Consensus 700 ~~~~e~~~~lseek~ar~k~e~~~~~i~~e~e~L~~ 735 (1317)
T KOG0612|consen 700 AQMKEIESKLSEEKSAREKAENLLLEIEAELEYLSN 735 (1317)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444445555566655555555555544
No 251
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=28.88 E-value=2.9e+02 Score=29.15 Aligned_cols=12 Identities=17% Similarity=0.133 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q psy3983 215 VQQMKAQAREEK 226 (318)
Q Consensus 215 vqqmkaqa~eek 226 (318)
|++-+-.+.+.|
T Consensus 66 VnqSALteqQ~k 77 (475)
T PRK13729 66 VRQHATTEMQVT 77 (475)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 252
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=28.80 E-value=3.8e+02 Score=23.10 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhchhhhcccc
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ-TELQLELQPIRNQSNLN 316 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 316 (318)
+.+|=..+......+.....++++...+.+.++..+..++..+-... .+++...+.+..+++-+
T Consensus 34 l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~e 98 (159)
T PRK13461 34 IDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEE 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 253
>KOG2002|consensus
Probab=28.57 E-value=5.5e+02 Score=29.65 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHh-hhhhhc---CCCCCCCccccccc
Q psy3983 118 QDITLRLFYLQV-SRSAGS---RVRFPPGPNCLLTP 149 (318)
Q Consensus 118 qe~TRylf~LQl-K~di~~---rl~C~~~~a~lL~p 149 (318)
.+.+-|.=.||+ .+.+-. .++|..++++.|+.
T Consensus 623 k~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~ 658 (1018)
T KOG2002|consen 623 KEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAE 658 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhh
Confidence 445555566777 333333 38888888888883
No 254
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=28.09 E-value=4.1e+02 Score=23.29 Aligned_cols=48 Identities=27% Similarity=0.422 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 256 RLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303 (318)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
.++..++.....+.......+.+.++.....+.+++...+......+.
T Consensus 124 ~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~ 171 (191)
T PF04156_consen 124 LLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQ 171 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444333333344444443333333
No 255
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=28.04 E-value=4.6e+02 Score=28.34 Aligned_cols=14 Identities=14% Similarity=0.157 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVE 263 (318)
Q Consensus 250 ~~~~~~~l~~~~~~ 263 (318)
..++..|+.+++.+
T Consensus 380 ~~~~~~~l~~le~~ 393 (656)
T PRK06975 380 VHQLDSQFAQLDGK 393 (656)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 256
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=28.04 E-value=4.2e+02 Score=23.31 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=10.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRD 268 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~ 268 (318)
|+..+.+.+..+..++..+..+.
T Consensus 62 A~~~~~ea~~~~~~~~~~L~~a~ 84 (174)
T PRK07352 62 AEERLRQAAQALAEAQQKLAQAQ 84 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 257
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=27.84 E-value=4.7e+02 Score=26.58 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy3983 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQPI 309 (318)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (318)
.++...+......+.++...|..+..+++.+++..
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444555555555555555555555555555544
No 258
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=27.68 E-value=4.6e+02 Score=23.88 Aligned_cols=11 Identities=18% Similarity=0.401 Sum_probs=7.2
Q ss_pred hhccccccccc
Q psy3983 198 MGNHELYMRRR 208 (318)
Q Consensus 198 v~~H~Ff~~rr 208 (318)
+|+..||-.-.
T Consensus 50 iGssn~YWsFp 60 (188)
T PF03962_consen 50 IGSSNYYWSFP 60 (188)
T ss_pred ccCeeEEEecC
Confidence 46677777654
No 259
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=27.40 E-value=1.8e+02 Score=29.15 Aligned_cols=50 Identities=34% Similarity=0.338 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 249 KHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEAR 298 (318)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
+..+|+++|..++.|+...+.+|.=++|+...|+.-+..+.-..+=+..+
T Consensus 183 k~~~l~~~l~~~~~eL~~~~k~L~faqekn~LlqslLddaniD~~y~ksR 232 (323)
T PF08537_consen 183 KIDELEERLNDLEKELEITKKDLKFAQEKNALLQSLLDDANIDSEYVKSR 232 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHhh
Confidence 36678888888888888888888888888888877776665544444333
No 260
>KOG0982|consensus
Probab=27.29 E-value=7.7e+02 Score=26.13 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=19.0
Q ss_pred hhHhHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHH
Q psy3983 232 QRDKLQLEIAAREKAEKK--HQESVERLKQLEVEMAKRD 268 (318)
Q Consensus 232 er~~l~~e~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 268 (318)
|+++-.+|...+...|+. ++-+.-++++++++.....
T Consensus 279 Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelR 317 (502)
T KOG0982|consen 279 EEERRHREILIKKEREASLEKENLQMRDQQLEEENTELR 317 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555444443333 4445566667666654433
No 261
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=27.20 E-value=7e+02 Score=25.64 Aligned_cols=10 Identities=0% Similarity=-0.370 Sum_probs=4.1
Q ss_pred CceEEEcCCc
Q psy3983 178 PDFVFFAPRV 187 (318)
Q Consensus 178 ~~~~F~~~~~ 187 (318)
.++.=.+.|+
T Consensus 48 ~~i~AVmvD~ 57 (387)
T PRK09510 48 SVIDAVMVDP 57 (387)
T ss_pred ccccceecCh
Confidence 3343344444
No 262
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=27.12 E-value=4.4e+02 Score=23.28 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=14.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy3983 240 IAAREKAEKKHQESVERLKQLEVEMAK 266 (318)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (318)
...+++++....+.+.+|.+.+.+...
T Consensus 62 e~~~~eA~~~~~e~e~~l~~a~~ea~~ 88 (173)
T PRK13453 62 EQAKLNAQKLEEENKQKLKETQEEVQK 88 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555566666555555443
No 263
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=27.07 E-value=3.9e+02 Score=23.73 Aligned_cols=35 Identities=34% Similarity=0.496 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 254 VERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQL 288 (318)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (318)
.++...+.....+.+++|.+...++..+..++.++
T Consensus 100 ~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~ 134 (145)
T COG1730 100 KKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQL 134 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333343333444444444444444444444333
No 264
>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function.
Probab=26.65 E-value=1.2e+02 Score=26.41 Aligned_cols=44 Identities=32% Similarity=0.557 Sum_probs=29.2
Q ss_pred cCccCccccc----ccccc---ceEEEEeCCCCCCceEEEcCCccchHHHHHHhhh
Q psy3983 151 IGFPWSEIRN----ISFND---RKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMG 199 (318)
Q Consensus 151 ~~f~W~~I~~----lsf~~---kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~ 199 (318)
+-+||.+|.. ++|++ .+|.|... +..+|.|.+.+ +|.+|+....
T Consensus 46 IQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk--~~G~f~Fsskd---~k~~Lk~~r~ 96 (118)
T PF06115_consen 46 IQIPWEEIDYVIASVSFKGKWIPRFAIFTK--KNGKFTFSSKD---SKKVLKAIRK 96 (118)
T ss_pred EEeChhheeEEEEEEEECCCEEeeEEEEEC--CCCEEEEEECC---hHHHHHHHHH
Confidence 4679999864 66766 34788763 33579998877 5555555433
No 265
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.62 E-value=4.2e+02 Score=29.04 Aligned_cols=43 Identities=23% Similarity=0.351 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAK 292 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (318)
...++..+..++.+.+.....+++....+..|+.++.++..+.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666777777777777777777777776666655443
No 266
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=26.53 E-value=4.7e+02 Score=23.41 Aligned_cols=71 Identities=20% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhhchhhhcc
Q psy3983 244 EKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQL--KQLQAAKEELEARQTELQLELQPIRNQSN 314 (318)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (318)
..++..+.+.+..+.+++..+..++.+-...-+.+..-.++. ....++..+..+...+++..+...+....
T Consensus 72 ~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~ 144 (181)
T PRK13454 72 AAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGAL 144 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 267
>PLN03188 kinesin-12 family protein; Provisional
Probab=26.38 E-value=5.4e+02 Score=30.62 Aligned_cols=8 Identities=25% Similarity=0.542 Sum_probs=3.3
Q ss_pred HHhhhccc
Q psy3983 195 ALCMGNHE 202 (318)
Q Consensus 195 ~lcv~~H~ 202 (318)
+.+|.-|.
T Consensus 1103 q~am~gha 1110 (1320)
T PLN03188 1103 QMAMEGHA 1110 (1320)
T ss_pred HHHHHHHH
Confidence 34444443
No 268
>KOG2264|consensus
Probab=26.06 E-value=4.8e+02 Score=28.77 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHH
Q psy3983 217 QMKAQAREEKNAKQQQRDKLQLEI 240 (318)
Q Consensus 217 qmkaqa~eek~~~~~er~~l~~e~ 240 (318)
..++--.+|-..-+..|++|..|+
T Consensus 86 RI~~sVs~EL~ele~krqel~seI 109 (907)
T KOG2264|consen 86 RILASVSLELTELEVKRQELNSEI 109 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344444444444444444444443
No 269
>COG1422 Predicted membrane protein [Function unknown]
Probab=25.95 E-value=3e+02 Score=25.96 Aligned_cols=18 Identities=28% Similarity=0.614 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3983 255 ERLKQLEVEMAKRDQDLM 272 (318)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~ 272 (318)
+||++.+.|+..-+.+++
T Consensus 101 kkLq~~qmem~~~Q~elm 118 (201)
T COG1422 101 KKLQEKQMEMMDDQRELM 118 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 270
>KOG4005|consensus
Probab=25.89 E-value=6.4e+02 Score=24.74 Aligned_cols=20 Identities=20% Similarity=0.102 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQ 269 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~ 269 (318)
-.||+..++.+.++.++...
T Consensus 92 m~eme~~i~dL~een~~L~~ 111 (292)
T KOG4005|consen 92 MEEMEYEIKDLTEENEILQN 111 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666655543
No 271
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=25.68 E-value=4.2e+02 Score=26.95 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=4.8
Q ss_pred ccccccc
Q psy3983 159 RNISFND 165 (318)
Q Consensus 159 ~~lsf~~ 165 (318)
.||.|.+
T Consensus 192 GnI~f~G 198 (451)
T PF03961_consen 192 GNIDFDG 198 (451)
T ss_pred CCEeeeE
Confidence 6777766
No 272
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.55 E-value=4.8e+02 Score=23.20 Aligned_cols=16 Identities=31% Similarity=0.381 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3983 274 AQEMIRRLEEQLKQLQ 289 (318)
Q Consensus 274 ~~~~~~~~~~~~~~~~ 289 (318)
++..+..|..|.+.++
T Consensus 173 ~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 173 KEKEIEALKKQSEGLQ 188 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444333
No 273
>KOG3535|consensus
Probab=25.40 E-value=4.1e+02 Score=28.12 Aligned_cols=22 Identities=14% Similarity=0.309 Sum_probs=17.7
Q ss_pred cCCCCeEEEeecCCceeeeecC
Q psy3983 61 NKKGTELWLGVDALGLNIYEKE 82 (318)
Q Consensus 61 d~kg~~~WLgl~k~Gi~Iy~~~ 82 (318)
+...+.+||.++-.||+|+...
T Consensus 88 G~HKqrI~l~Is~~GIKI~DEK 109 (557)
T KOG3535|consen 88 GAHKQRITLQISIDGIKILDEK 109 (557)
T ss_pred ccccceEEEEEeecceEEeecc
Confidence 3345789999999999998753
No 274
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=25.36 E-value=1e+03 Score=26.79 Aligned_cols=10 Identities=40% Similarity=0.411 Sum_probs=3.9
Q ss_pred HHHHHHHhhc
Q psy3983 299 QTELQLELQP 308 (318)
Q Consensus 299 ~~~~~~~~~~ 308 (318)
-.+++.++++
T Consensus 703 c~~Le~el~r 712 (769)
T PF05911_consen 703 CRELEEELER 712 (769)
T ss_pred HHHHHHHHHh
Confidence 3333334433
No 275
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.36 E-value=8.3e+02 Score=25.85 Aligned_cols=10 Identities=10% Similarity=0.195 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy3983 254 VERLKQLEVE 263 (318)
Q Consensus 254 ~~~l~~~~~~ 263 (318)
..++.+...+
T Consensus 66 ~~~l~~~~~~ 75 (475)
T PRK10361 66 NNEVRSLQSI 75 (475)
T ss_pred HHHHHHHHHH
Confidence 3333433333
No 276
>KOG0804|consensus
Probab=25.30 E-value=8.4e+02 Score=25.92 Aligned_cols=78 Identities=23% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHhhHhHHHHHHHHHH---------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 230 QQQRDKLQLEIAAREK---------AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQT 300 (318)
Q Consensus 230 ~~er~~l~~e~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
|.++++-..|...-+. ++.++.-++.++.|++...++...+|+..+|.-..|-+...--....++++.+..
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~ 427 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREK 427 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhh
Q psy3983 301 ELQLELQ 307 (318)
Q Consensus 301 ~~~~~~~ 307 (318)
++-..++
T Consensus 428 ~~~~s~d 434 (493)
T KOG0804|consen 428 EALGSKD 434 (493)
T ss_pred HHHHHHH
No 277
>KOG4046|consensus
Probab=25.28 E-value=91 Score=29.72 Aligned_cols=17 Identities=35% Similarity=0.478 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHccCC
Q psy3983 17 SEWESSITTWWKEHKGM 33 (318)
Q Consensus 17 ~~~e~~I~~~hk~~kG~ 33 (318)
++|..=|.++-+.+.|.
T Consensus 106 ~lW~~Yirell~~~~~~ 122 (224)
T KOG4046|consen 106 ELWKSYIRELLKGTKGD 122 (224)
T ss_pred HHHHHHHHHHHhccCCC
Confidence 68999999998888885
No 278
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=25.23 E-value=5.8e+02 Score=24.06 Aligned_cols=52 Identities=27% Similarity=0.368 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983 255 ERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 255 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
.+...+++.....+..+..+.+....|...+..++..-.++.++...+....
T Consensus 92 ~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 92 EEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666666666665555555554444433
No 279
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=25.13 E-value=1e+03 Score=26.96 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 222 AREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKE 293 (318)
Q Consensus 222 a~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (318)
.+-|.-.|-+|-++...-+....-.++ -+++.+-=++++.|+.+...++.++--...-+.-++..++.|-.
T Consensus 455 ~kneellk~~e~q~~Enk~~~~~~~ek-d~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~ 525 (861)
T PF15254_consen 455 SKNEELLKVIENQKEENKRLRKMFQEK-DQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQ 525 (861)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhh
Confidence 344444555555554443333332222 33344444677777777777766665555544444444444433
No 280
>KOG4005|consensus
Probab=25.04 E-value=6.6e+02 Score=24.64 Aligned_cols=10 Identities=30% Similarity=0.713 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q psy3983 256 RLKQLEVEMA 265 (318)
Q Consensus 256 ~l~~~~~~~~ 265 (318)
|+..++.+++
T Consensus 91 Rm~eme~~i~ 100 (292)
T KOG4005|consen 91 RMEEMEYEIK 100 (292)
T ss_pred HHHHHHHHHH
Confidence 3344444433
No 281
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=24.75 E-value=90 Score=28.36 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=14.9
Q ss_pred HHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 225 EKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDL 271 (318)
Q Consensus 225 ek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 271 (318)
-|.-.-+||+.|..+.. .|++.|...++.+.||++...++|
T Consensus 7 sklN~AIERnalLE~EL------dEKE~L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 7 SKLNQAIERNALLESEL------DEKENLREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHHHHHHHHHHHHHHH------HHHHHHHHCH--------------
T ss_pred HHHHHHHHHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567776554433 345556666666677777666666
No 282
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=24.74 E-value=5.1e+02 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=11.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHH
Q psy3983 241 AAREKAEKKHQESVERLKQLEVEM 264 (318)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~ 264 (318)
..+++++....+.+++|.....+.
T Consensus 55 ~~k~eAe~l~a~ye~~L~~Ar~eA 78 (155)
T PRK06569 55 TLTIEVEKLNKYYNEEIDKTNTEI 78 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555554444433
No 283
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=24.63 E-value=4.8e+02 Score=22.86 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=14.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy3983 245 KAEKKHQESVERLKQLEVEMAKRDQD 270 (318)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~~ 270 (318)
.|++.+.+.+..+.+++..+..+..+
T Consensus 52 ~Ae~~k~eAe~~~~~~e~~L~~A~~e 77 (167)
T PRK14475 52 EAQRLREEAQALLADVKAEREEAERQ 77 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666666655555443
No 284
>PRK11281 hypothetical protein; Provisional
Probab=24.60 E-value=4.1e+02 Score=30.90 Aligned_cols=51 Identities=31% Similarity=0.313 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
+|....+..++|.+.++....+..++..++..-++-.+..+++...++.|+
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~ 176 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIR 176 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444433333333333344444444443
No 285
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=24.58 E-value=2.9e+02 Score=20.34 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 249 KHQESVERLKQLEVEMAKRDQDL 271 (318)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~ 271 (318)
..++|+.++..++.+.......+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~ 49 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKEL 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444433333
No 286
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=24.21 E-value=3.6e+02 Score=22.51 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=7.5
Q ss_pred CccCccccccccc
Q psy3983 152 GFPWSEIRNISFN 164 (318)
Q Consensus 152 ~f~W~~I~~lsf~ 164 (318)
.+.|..|..+.-.
T Consensus 9 ~iDWr~i~~iDvd 21 (118)
T PF13815_consen 9 PIDWRLISAIDVD 21 (118)
T ss_pred CCcHHHHhccCHH
Confidence 4556666665544
No 287
>KOG0933|consensus
Probab=24.09 E-value=1.2e+03 Score=27.35 Aligned_cols=48 Identities=25% Similarity=0.345 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 257 LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304 (318)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
..+++.+.......|......+..|..++..+...-...+....+++.
T Consensus 824 ~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~ 871 (1174)
T KOG0933|consen 824 HEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQA 871 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 334445555555555555555555555554444444333333333333
No 288
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=24.04 E-value=2.5e+02 Score=25.65 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=25.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQ 284 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (318)
|.++++|...|.+.|+|+.-..+-|...+....+|..+
T Consensus 28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrk 65 (162)
T PF04201_consen 28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRK 65 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34456677777888888877777776666555555444
No 289
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=23.98 E-value=2.7e+02 Score=19.74 Aligned_cols=22 Identities=23% Similarity=0.436 Sum_probs=16.7
Q ss_pred CCCeEEEeecCCceeeeecCCc
Q psy3983 63 KGTELWLGVDALGLNIYEKEDN 84 (318)
Q Consensus 63 kg~~~WLgl~k~Gi~Iy~~~dk 84 (318)
.....|+-+...++.+|...+.
T Consensus 18 ~w~~~~~~l~~~~l~~~~~~~~ 39 (99)
T cd00900 18 RWKRRWFFLFDDGLLLYKSDDK 39 (99)
T ss_pred CceeeEEEEECCEEEEEEcCCC
Confidence 4557899999888888876544
No 290
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=23.89 E-value=77 Score=25.85 Aligned_cols=24 Identities=38% Similarity=0.673 Sum_probs=21.3
Q ss_pred HHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 26 WWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 26 ~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
-|...+|.|.+||..+|+..+..|
T Consensus 58 AW~~LKGksqedA~qeYialVeeL 81 (87)
T COG4281 58 AWAGLKGKSQEDARQEYIALVEEL 81 (87)
T ss_pred HHhhccCccHHHHHHHHHHHHHHH
Confidence 467899999999999999988765
No 291
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.89 E-value=4e+02 Score=21.66 Aligned_cols=56 Identities=18% Similarity=0.240 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
..|+.++.+.-|...-.+-++.+..+.-..|.++...+...++.|..+...+.++-
T Consensus 7 eqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34666666666666666666666666666666666665555555555555555443
No 292
>KOG2077|consensus
Probab=23.88 E-value=8.8e+02 Score=26.80 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEA 274 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~ 274 (318)
+..|+++++.+++|++++.++++.+
T Consensus 352 k~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 352 KLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777766666655
No 293
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=23.76 E-value=2.3e+02 Score=24.01 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=28.5
Q ss_pred cCccCccccccccccceEEEEeCCC---CCCceEEEcCCc
Q psy3983 151 IGFPWSEIRNISFNDRKFIIKPIDK---KAPDFVFFAPRV 187 (318)
Q Consensus 151 ~~f~W~~I~~lsf~~kkF~Ikp~dk---k~~~~~F~~~~~ 187 (318)
...||.-|++-.++++.|.++..-. ....|.|.|+..
T Consensus 44 ~~WP~~~LRryG~d~~~FsFEAGRrC~tGeG~f~F~t~~~ 83 (104)
T cd01203 44 YMWPYRFLRKYGRDKGKFSFEAGRRCTSGEGVFTFDTTQG 83 (104)
T ss_pred EEeehHhhhhhcccCCEEEEEecCcCCCCCcEEEEecCCH
Confidence 4677789999999999999997432 224799999874
No 294
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=23.63 E-value=1.1e+03 Score=26.89 Aligned_cols=20 Identities=5% Similarity=0.107 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHhhHhH
Q psy3983 217 QMKAQAREEKNAKQQQRDKL 236 (318)
Q Consensus 217 qmkaqa~eek~~~~~er~~l 236 (318)
.++.++++.+.....-+.++
T Consensus 188 ~l~er~k~~~~~l~~l~~~l 207 (1047)
T PRK10246 188 MVFEQHKSARTELEKLQAQA 207 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666555554444444
No 295
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=23.22 E-value=6.4e+02 Score=28.23 Aligned_cols=57 Identities=30% Similarity=0.432 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3983 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
.++..++..++.++.....+...++..+.+|..-++.++.++..++.+..+++.++.
T Consensus 544 ~e~~~r~~~Le~ev~~~~ee~~kaq~EVERLl~~L~~~E~EK~~ke~ki~~LekeLe 600 (775)
T PF10174_consen 544 AELRDRIQQLEQEVTRYREESEKAQAEVERLLDILREAENEKNDKEKKIGELEKELE 600 (775)
T ss_pred HhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 355667888888888888899999999999999999999999999998888887753
No 296
>KOG0982|consensus
Probab=23.10 E-value=9.2e+02 Score=25.58 Aligned_cols=36 Identities=36% Similarity=0.573 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhchhh
Q psy3983 276 EMIRRLEEQLKQLQAAKEELE--------ARQTELQLELQPIRN 311 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 311 (318)
|-+.+|-.++..++..+-.++ ++..+++++..+|+.
T Consensus 374 ELieelrkelehlr~~kl~~a~p~rgrsSaRe~eleqevkrLrq 417 (502)
T KOG0982|consen 374 ELIEELRKELEHLRRRKLVLANPVRGRSSAREIELEQEVKRLRQ 417 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccCchhHHHHHHHHHHHHhcc
Confidence 334444445555555554444 444566666666553
No 297
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=23.01 E-value=6.4e+02 Score=23.76 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy3983 257 LKQLEVEMAKRDQDL 271 (318)
Q Consensus 257 l~~~~~~~~~~~~~~ 271 (318)
+...+.+...++.++
T Consensus 117 ~~~a~~~l~~a~~~~ 131 (334)
T TIGR00998 117 LEQAREKLLQAELDL 131 (334)
T ss_pred HHHHHHHHHHhHHHH
Confidence 333333333333333
No 298
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=22.93 E-value=7.5e+02 Score=24.48 Aligned_cols=74 Identities=26% Similarity=0.245 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHH-hhHhHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 220 AQAREEKNAKQQ-QRDKLQLEIAAREK----AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKE 293 (318)
Q Consensus 220 aqa~eek~~~~~-er~~l~~e~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (318)
-..-|||-+|-| .-.+|-.|+..-.- .-.+.+++++.+.+++.+.+....++.........|..++..++++-.
T Consensus 86 l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~ 164 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK 164 (302)
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888877 44557677655432 233455666666666666666666666666666666666555555443
No 299
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=22.85 E-value=3.1e+02 Score=23.70 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3983 254 VERLKQLEVEMAKRDQDLMEAQ 275 (318)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~ 275 (318)
.++++.+++|.+.+.++|.++-
T Consensus 103 ~~~i~~L~~E~~~~~~el~~~v 124 (144)
T PF11221_consen 103 LKRIKELEEENEEAEEELQEAV 124 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555554333
No 300
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=22.68 E-value=4.9e+02 Score=22.23 Aligned_cols=9 Identities=11% Similarity=0.239 Sum_probs=3.4
Q ss_pred ccchHHHHH
Q psy3983 187 VRVNKRILA 195 (318)
Q Consensus 187 ~~~~K~iw~ 195 (318)
......|.+
T Consensus 30 ~~~~~~vin 38 (151)
T PF11559_consen 30 EDNDVRVIN 38 (151)
T ss_pred cccHHHHHH
Confidence 333333333
No 301
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.58 E-value=3.7e+02 Score=20.84 Aligned_cols=59 Identities=17% Similarity=0.168 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3983 249 KHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307 (318)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
+...|..+|.++..+....+.++......-.....++..+-.+..+|.++...+..+++
T Consensus 6 ~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 6 EIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555554444444433333222222333333333333344433333333333
No 302
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=22.48 E-value=6.9e+02 Score=23.91 Aligned_cols=15 Identities=7% Similarity=0.065 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKR 267 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~ 267 (318)
++.+-+.+++.....
T Consensus 234 le~~~~~~ee~~~~L 248 (297)
T PF02841_consen 234 LEQQERSYEEHIKQL 248 (297)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333334444443333
No 303
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.48 E-value=6.5e+02 Score=23.93 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 251 QESVERLKQLEVEMAKRDQDLMEA 274 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~ 274 (318)
-+|..+|.+++.|..+.+-.+++.
T Consensus 57 ~~l~~ql~~lq~ev~~LrG~~E~~ 80 (263)
T PRK10803 57 TQLQQQLSDNQSDIDSLRGQIQEN 80 (263)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345555555555554444444333
No 304
>KOG4403|consensus
Probab=22.42 E-value=8.5e+02 Score=25.95 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=7.0
Q ss_pred cccccccceEEEE
Q psy3983 159 RNISFNDRKFIIK 171 (318)
Q Consensus 159 ~~lsf~~kkF~Ik 171 (318)
.|.+|-++...|+
T Consensus 173 ~n~~f~~~~Lgik 185 (575)
T KOG4403|consen 173 PNSDFLGKVLGIK 185 (575)
T ss_pred CchHHhhhhhccC
Confidence 4455555555554
No 305
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=22.37 E-value=6e+02 Score=27.45 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=27.2
Q ss_pred ceEEEEeCCCC-CCceEEEcCCccchHHHHHHhhhccc
Q psy3983 166 RKFIIKPIDKK-APDFVFFAPRVRVNKRILALCMGNHE 202 (318)
Q Consensus 166 kkF~Ikp~dkk-~~~~~F~~~~~~~~K~iw~lcv~~H~ 202 (318)
+...|.+.... .-.+.|..++|..+..|.+..+..--
T Consensus 144 ~~L~V~~~~~s~ii~Is~~~~dP~~Aa~iaN~la~~Y~ 181 (754)
T TIGR01005 144 EKLNVFGVEKTRIIAIEFRSEDPKLAAAIPDAIAAAYI 181 (754)
T ss_pred hcceEEecCccEEEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 45677765432 23589999999999999998876543
No 306
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=22.17 E-value=7e+02 Score=26.23 Aligned_cols=13 Identities=38% Similarity=0.831 Sum_probs=9.7
Q ss_pred cCCCCeEEEeecC
Q psy3983 61 NKKGTELWLGVDA 73 (318)
Q Consensus 61 d~kg~~~WLgl~k 73 (318)
+.+|+-.||+-+-
T Consensus 139 ~~~n~~~Wi~Cd~ 151 (446)
T PF07227_consen 139 DNKNTCSWIGCDV 151 (446)
T ss_pred cCCCCeeEEeccC
Confidence 4567889998765
No 307
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=22.07 E-value=5.9e+02 Score=22.97 Aligned_cols=41 Identities=34% Similarity=0.554 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 259 QLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
.++.........+..+...+..|...+..++....++..++
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444444444333
No 308
>KOG0996|consensus
Probab=22.06 E-value=1.4e+03 Score=27.28 Aligned_cols=60 Identities=27% Similarity=0.387 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 250 HQESVERLKQLEVEMAKR---DQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
.+.++.++.+++..+.+. ...|.+.++.+..++.++..+++.+.. .++..+++..+..|.
T Consensus 836 ~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~ 898 (1293)
T KOG0996|consen 836 IEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIG 898 (1293)
T ss_pred HHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhh
Confidence 455666666666664443 334556666777777777777755555 555566666555543
No 309
>PLN02678 seryl-tRNA synthetase
Probab=22.02 E-value=7e+02 Score=25.96 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy3983 285 LKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
.+.+.++...|+....+++.++
T Consensus 80 ~~~Lk~ei~~le~~~~~~~~~l 101 (448)
T PLN02678 80 TKELKKEITEKEAEVQEAKAAL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444443333333
No 310
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.79 E-value=1.2e+03 Score=26.59 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=49.3
Q ss_pred HHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 246 AEKKHQESV---ERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 246 ~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
+.+...|+. ++|.+-++.++-+.+.|..++.....|+-+-++.-.|-..+...+.-++.+..+++
T Consensus 672 a~rqIael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~vler~~~~~~~e~~~~k~~lkrA~~~~~k~~ 739 (1104)
T COG4913 672 AQRQIAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLERQYQQEVTECAGLKKDLKRAAMLSRKVH 739 (1104)
T ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444 45555567788888999999999999999999988888888887777777766654
No 311
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=21.71 E-value=2.5e+02 Score=22.94 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 249 KHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
+.+.+++++.+........+..|...+ .-.+.++.++.|...|-.....-+.++..|+
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~e----Ls~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRRE----LSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHcccC----CChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 445566666666666665555553221 1223344444555555555555555555544
No 312
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=21.65 E-value=3.9e+02 Score=21.62 Aligned_cols=24 Identities=13% Similarity=0.423 Sum_probs=18.0
Q ss_pred cCCCCeEEEeecCCceeeeecCCc
Q psy3983 61 NKKGTELWLGVDALGLNIYEKEDN 84 (318)
Q Consensus 61 d~kg~~~WLgl~k~Gi~Iy~~~dk 84 (318)
.+++....|.++..||.+.....+
T Consensus 40 ~~~~~~v~l~vs~~gv~v~~~~~~ 63 (134)
T smart00462 40 KKEPQKVILSISSRGVKLIDEDTK 63 (134)
T ss_pred cCCCCEEEEEEECCcEEEEECCCC
Confidence 345678889999999999865433
No 313
>KOG0250|consensus
Probab=21.31 E-value=1.4e+03 Score=26.89 Aligned_cols=33 Identities=9% Similarity=0.332 Sum_probs=18.1
Q ss_pred eEEEeecCCceeeeecCCcccc-ccccccccCCC
Q psy3983 66 ELWLGVDALGLNIYEKEDNLTN-VMSQDVKKENP 98 (318)
Q Consensus 66 ~~WLgl~k~Gi~Iy~~~dk~~~-v~~q~i~~~~p 98 (318)
.+-+-++++|..-|+.+...+. ++.+.|....+
T Consensus 111 ~IsItL~N~G~~Afk~eiyG~~IiIER~I~~~~S 144 (1074)
T KOG0250|consen 111 KISITLSNSGLDAFKPEIYGNSIIIERTIRRSSS 144 (1074)
T ss_pred EEEEEEecCCcccCChhhcCCeeEEEEeeccccc
Confidence 4556677777777764433333 34444655444
No 314
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.25 E-value=4.4e+02 Score=21.19 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3983 276 EMIRRLEEQLKQLQAAKEELE 296 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~ 296 (318)
+.-..|..+...++...+.|+
T Consensus 32 Eknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 32 EKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHhhHhHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 315
>KOG2077|consensus
Probab=21.10 E-value=3.3e+02 Score=29.89 Aligned_cols=39 Identities=31% Similarity=0.293 Sum_probs=19.3
Q ss_pred HHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3983 229 KQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKR 267 (318)
Q Consensus 229 ~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (318)
+.+=|..|..-+++..+.|....++++.|+.+..++..+
T Consensus 338 ~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 338 KDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555555555554444333
No 316
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=21.04 E-value=6e+02 Score=22.65 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 266 (318)
..|..-...|++++.-..+.+..|.+...+...
T Consensus 42 ~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~ 74 (154)
T PRK06568 42 EKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQ 74 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444556666666666676666665555443
No 317
>KOG4403|consensus
Probab=21.03 E-value=5.8e+02 Score=27.12 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy3983 235 KLQLEIAAREKAEKKHQESVERLKQLEVE 263 (318)
Q Consensus 235 ~l~~e~~~~~~~~~~~~~~~~~l~~~~~~ 263 (318)
+++..-.--+.||+..+++.++|...++|
T Consensus 246 km~kdle~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 246 KMMKDLEGLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444455777777777777766665
No 318
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=20.99 E-value=8.6e+02 Score=24.47 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhh
Q psy3983 286 KQLQAAKEELEARQTELQLELQPIRNQ 312 (318)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (318)
.+-+...+++..+..-++.-+|||+..
T Consensus 64 ~rYqR~y~ema~~L~~LeavLqRir~G 90 (324)
T PF12126_consen 64 ARYQRDYEEMAGQLGRLEAVLQRIRTG 90 (324)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhH
Confidence 344445555555555555555665544
No 319
>PF15437 PGBA_C: Plasminogen-binding protein pgbA C-terminal
Probab=20.99 E-value=4.7e+02 Score=21.52 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHH
Q psy3983 217 QMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLK 258 (318)
Q Consensus 217 qmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~ 258 (318)
+-|..-++|+.....+......|..+++..|+.-.+|++|-+
T Consensus 38 EekrrLkeEkKkAKAeqrA~EfEqRakehqErDEkElEERrK 79 (86)
T PF15437_consen 38 EEKRRLKEEKKKAKAEQRAREFEQRAKEHQERDEKELEERRK 79 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455444444444455555555555555555554433
No 320
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=20.76 E-value=1.9e+02 Score=21.97 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=11.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 248 KKHQESVERLKQLEVEMAKRDQDL 271 (318)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~~~ 271 (318)
+....||+||.+.+.+.+.++..+
T Consensus 32 qRLa~LE~rL~~ae~ra~~ae~~~ 55 (60)
T PF11471_consen 32 QRLAALEQRLQAAEQRAQAAEARA 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555554444433
No 321
>KOG0249|consensus
Probab=20.74 E-value=7.5e+02 Score=27.96 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=19.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 245 KAEKKHQESVERLKQLEVEMAKRDQDLMEAQE 276 (318)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 276 (318)
.++......++++++++.+.+..+++|.++..
T Consensus 153 ~aee~~~~~eer~~kl~~~~qe~naeL~rarq 184 (916)
T KOG0249|consen 153 KAEEHSGNIEERTRKLEEQLEELNAELQRARQ 184 (916)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666677777666666666655543
No 322
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=20.57 E-value=5.6e+02 Score=25.76 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=25.9
Q ss_pred ChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCC
Q psy3983 15 SPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT 65 (318)
Q Consensus 15 ~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~ 65 (318)
|++.|+.-+......+.=+|+.=|+ + +......++++++++..+.
T Consensus 2 t~~e~d~f~~~~~~~~flQs~~wa~---v---k~~~gw~~~~vgv~~d~~~ 46 (406)
T PF02388_consen 2 TAEEFDAFVENHPQGNFLQSSEWAE---V---KEKRGWEVERVGVKDDGGE 46 (406)
T ss_dssp -HHHHHHHHHCSTT--CCCSHHHHH---H---CHHTTSEEEEEEEE-TTS-
T ss_pred CHHHHHHHHHhCCCCCcchHHHHHH---H---HHHCCCeEEEEEEEeCCCe
Confidence 5677777777666666667775333 2 3334678899999765443
No 323
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.47 E-value=7.4e+02 Score=26.49 Aligned_cols=64 Identities=20% Similarity=0.381 Sum_probs=29.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhchh
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQ----LQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
..+.+++++|+..++...=+.=.++..+.+.+..|..+.+. ++....+|+.....++..+..|+
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33456666676666653112222333333444433333333 44444445555555555444444
No 324
>KOG0288|consensus
Probab=20.44 E-value=1e+03 Score=25.09 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=8.1
Q ss_pred HHhHHHHHHHHHHHHHHH
Q psy3983 247 EKKHQESVERLKQLEVEM 264 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~ 264 (318)
|-+..+|.+...++-++.
T Consensus 54 E~~l~~Lq~e~~~l~e~~ 71 (459)
T KOG0288|consen 54 ELELNRLQEENTQLNEER 71 (459)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
Done!