Query psy3983
Match_columns 318
No_of_seqs 231 out of 777
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 22:16:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i1j_A Moesin; FERM, coiled-co 100.0 1.3E-55 4.6E-60 448.4 20.1 253 2-316 151-403 (575)
2 1ef1_A Moesin; membrane, FERM 100.0 6.3E-32 2.2E-36 249.2 14.4 147 2-210 148-294 (294)
3 1h4r_A Merlin; FERM, neurofibr 100.0 2.8E-31 9.7E-36 247.8 14.5 147 2-210 168-314 (314)
4 3qij_A Protein 4.1; cytoskelet 99.9 6E-28 2E-32 225.8 11.1 125 16-205 168-296 (296)
5 1mix_A Talin; focal adhesion, 99.8 4.7E-20 1.6E-24 161.3 13.0 132 2-205 70-206 (206)
6 4f7g_A Talin-1; alpha-helix bu 99.8 4E-19 1.4E-23 158.9 12.3 137 2-210 81-222 (222)
7 2al6_A Focal adhesion kinase 1 99.6 6.6E-16 2.3E-20 148.6 12.2 140 2-208 175-325 (375)
8 3pvl_A Myosin VIIA isoform 1; 99.6 7.7E-16 2.6E-20 158.9 11.7 132 2-200 421-568 (655)
9 2i1j_A Moesin; FERM, coiled-co 99.6 1.3E-15 4.6E-20 155.0 12.0 94 42-148 30-126 (575)
10 3ivf_A Talin-1; FERM domain, c 99.6 2.2E-15 7.6E-20 143.8 11.1 131 2-204 235-370 (371)
11 4dxa_B KREV interaction trappe 99.6 1.7E-15 5.8E-20 142.5 9.1 131 2-199 169-314 (322)
12 3au4_A Myosin-X; protein-prote 99.5 1.2E-14 4.2E-19 145.6 10.0 123 20-211 418-544 (555)
13 1ef1_A Moesin; membrane, FERM 99.5 8.7E-15 3E-19 134.8 6.2 95 42-149 27-124 (294)
14 1h4r_A Merlin; FERM, neurofibr 99.5 2E-14 6.9E-19 133.9 5.2 95 42-149 48-144 (314)
15 3qij_A Protein 4.1; cytoskelet 99.5 1.7E-14 5.7E-19 134.8 3.6 93 41-149 43-138 (296)
16 2j0j_A Focal adhesion kinase 1 99.2 1.9E-11 6.4E-16 124.6 6.0 101 40-148 36-142 (656)
17 3ivf_A Talin-1; FERM domain, c 99.1 1.5E-11 5.1E-16 117.4 3.6 93 42-149 112-211 (371)
18 4eku_A Protein-tyrosine kinase 99.1 1.3E-09 4.4E-14 106.5 14.0 135 2-202 195-336 (392)
19 2al6_A Focal adhesion kinase 1 99.0 2.6E-10 8.8E-15 109.7 5.4 100 39-148 35-142 (375)
20 2j0j_A Focal adhesion kinase 1 98.6 3.7E-07 1.2E-11 93.0 13.1 139 2-207 175-332 (656)
21 4dxa_B KREV interaction trappe 98.5 7.5E-09 2.6E-13 97.2 -1.4 58 91-149 83-142 (322)
22 3au4_A Myosin-X; protein-prote 98.5 6.5E-08 2.2E-12 96.9 3.5 101 45-149 246-349 (555)
23 3pvl_A Myosin VIIA isoform 1; 98.4 1.4E-07 4.8E-12 97.5 5.9 103 43-149 291-399 (655)
24 4eku_A Protein-tyrosine kinase 98.4 3.3E-07 1.1E-11 89.4 5.7 87 52-148 68-162 (392)
25 1mix_A Talin; focal adhesion, 98.2 1.7E-07 5.7E-12 81.6 0.5 45 105-149 1-46 (206)
26 3u1c_A Tropomyosin alpha-1 cha 96.0 0.27 9.1E-06 39.4 13.9 89 215-303 11-99 (101)
27 4f7g_A Talin-1; alpha-helix bu 95.9 0.0018 6.2E-08 57.3 1.0 35 108-149 22-57 (222)
28 3u59_A Tropomyosin beta chain; 94.8 0.96 3.3E-05 36.0 13.3 87 215-301 11-97 (101)
29 2dfs_A Myosin-5A; myosin-V, in 92.0 1.1 3.9E-05 48.9 12.4 42 234-275 963-1004(1080)
30 1ic2_A Tropomyosin alpha chain 90.3 4.3 0.00015 30.9 10.8 61 215-275 8-68 (81)
31 3oja_B Anopheles plasmodium-re 89.4 3.8 0.00013 40.2 12.6 37 259-295 513-549 (597)
32 1f5n_A Interferon-induced guan 88.1 6.1 0.00021 40.5 13.3 17 296-312 566-582 (592)
33 3vkg_A Dynein heavy chain, cyt 86.0 5.4 0.00019 48.4 13.0 54 254-307 2013-2066(3245)
34 3hnw_A Uncharacterized protein 85.9 7.1 0.00024 32.9 10.4 56 251-306 78-133 (138)
35 3oja_B Anopheles plasmodium-re 82.0 30 0.001 33.8 14.6 40 269-308 537-576 (597)
36 3o0z_A RHO-associated protein 80.6 29 0.00099 30.4 14.3 61 236-296 78-138 (168)
37 3o0z_A RHO-associated protein 80.6 29 0.00099 30.4 15.4 62 246-307 60-121 (168)
38 2fxo_A Myosin heavy chain, car 79.6 24 0.00082 28.9 14.3 12 238-249 31-42 (129)
39 3hnw_A Uncharacterized protein 79.2 27 0.00091 29.3 11.4 41 248-288 89-129 (138)
40 1d7m_A Cortexillin I; coiled-c 79.1 23 0.00079 28.4 12.3 67 234-300 11-77 (101)
41 2v4h_A NF-kappa-B essential mo 78.6 25 0.00084 28.9 10.5 84 208-291 19-105 (110)
42 2ocy_A RAB guanine nucleotide 78.0 33 0.0011 29.6 12.1 79 234-312 65-151 (154)
43 2no2_A HIP-I, huntingtin-inter 77.5 26 0.0009 28.2 12.9 74 236-309 17-101 (107)
44 3vkg_A Dynein heavy chain, cyt 77.2 17 0.00057 44.4 12.7 58 250-307 2016-2073(3245)
45 2jee_A YIIU; FTSZ, septum, coi 75.9 17 0.00058 28.4 8.5 53 257-309 8-60 (81)
46 3nmd_A CGMP dependent protein 75.4 11 0.00036 28.9 7.0 43 257-299 21-63 (72)
47 3q8t_A Beclin-1; autophagy, AT 74.2 30 0.001 27.2 10.7 62 250-311 20-81 (96)
48 3s9g_A Protein hexim1; cyclin 72.3 26 0.00089 28.4 9.0 50 248-297 37-86 (104)
49 1f5n_A Interferon-induced guan 71.9 50 0.0017 33.7 13.3 29 236-264 489-517 (592)
50 2zuo_A MVP, major vault protei 70.0 89 0.003 33.7 14.9 18 224-241 681-698 (861)
51 3mq9_A Bone marrow stromal ant 70.0 77 0.0026 30.2 14.3 63 246-311 402-464 (471)
52 3bas_A Myosin heavy chain, str 70.0 36 0.0012 26.3 9.5 50 246-295 33-82 (89)
53 2v4h_A NF-kappa-B essential mo 68.3 16 0.00055 30.0 7.1 34 231-264 73-106 (110)
54 1ic2_A Tropomyosin alpha chain 64.5 43 0.0015 25.2 11.4 43 250-292 22-64 (81)
55 1gmj_A ATPase inhibitor; coile 64.0 51 0.0017 25.9 8.9 21 218-238 24-44 (84)
56 2b9c_A Striated-muscle alpha t 63.3 68 0.0023 27.1 13.8 58 241-298 66-123 (147)
57 3iv1_A Tumor susceptibility ge 63.0 50 0.0017 25.5 9.3 60 243-306 17-76 (78)
58 3efg_A Protein SLYX homolog; x 62.9 24 0.00081 27.0 6.8 51 246-296 12-62 (78)
59 3cve_A Homer protein homolog 1 62.7 48 0.0017 25.2 9.7 63 247-309 6-68 (72)
60 2b9c_A Striated-muscle alpha t 62.4 71 0.0024 27.0 13.4 83 226-309 31-113 (147)
61 3cvf_A Homer-3, homer protein 61.5 54 0.0018 25.3 9.2 67 244-310 9-75 (79)
62 4dx8_A Integrin beta-1-binding 59.2 27 0.00093 30.2 7.1 41 38-84 41-81 (154)
63 3q8t_A Beclin-1; autophagy, AT 57.9 46 0.0016 26.1 7.9 49 251-299 7-55 (96)
64 1hbk_A ACBP, acyl-COA binding 57.1 6.8 0.00023 30.4 2.8 25 25-49 59-83 (89)
65 3u1c_A Tropomyosin alpha-1 cha 55.5 74 0.0025 25.0 13.3 59 250-308 25-90 (101)
66 3a7p_A Autophagy protein 16; c 55.4 93 0.0032 26.8 9.8 50 247-296 74-123 (152)
67 3iox_A AGI/II, PA; alpha helix 54.5 1.6E+02 0.0056 29.7 12.9 85 212-296 18-107 (497)
68 1wt6_A Myotonin-protein kinase 53.5 77 0.0026 24.7 8.3 46 250-295 26-71 (81)
69 2cb8_A Acyl-COA-binding protei 53.1 8 0.00027 30.0 2.6 25 25-49 57-81 (87)
70 2e7s_A RAB guanine nucleotide 50.8 19 0.00066 30.5 4.8 28 234-261 53-80 (135)
71 1st7_A ACBP, acyl-COA-binding 50.5 6.8 0.00023 30.2 1.8 25 25-49 56-80 (86)
72 2lbb_A Acyl COA binding protei 50.3 10 0.00034 30.2 2.8 25 25-49 66-90 (96)
73 2eqb_B RAB guanine nucleotide 50.1 97 0.0033 24.8 10.5 30 232-261 31-60 (97)
74 4etp_A Kinesin-like protein KA 49.9 55 0.0019 31.7 8.5 48 251-298 6-53 (403)
75 3epy_A Acyl-COA-binding domain 49.8 9.6 0.00033 29.7 2.6 24 26-49 60-83 (89)
76 3jsv_C NF-kappa-B essential mo 49.5 13 0.00045 29.8 3.3 49 226-274 46-94 (94)
77 3a7p_A Autophagy protein 16; c 49.4 1.3E+02 0.0044 26.0 12.0 20 277-296 111-130 (152)
78 3oja_A Leucine-rich immune mol 49.4 1.8E+02 0.006 27.8 12.0 54 256-309 422-475 (487)
79 1gd2_E Transcription factor PA 47.9 69 0.0024 24.0 7.0 27 241-267 22-48 (70)
80 3oja_A Leucine-rich immune mol 46.3 2E+02 0.0069 27.4 15.3 31 276-306 435-465 (487)
81 3bas_A Myosin heavy chain, str 46.0 99 0.0034 23.7 11.0 20 286-305 59-78 (89)
82 2cop_A Acyl-coenzyme A binding 45.8 11 0.00038 30.5 2.4 24 26-49 64-87 (109)
83 2jee_A YIIU; FTSZ, septum, coi 45.4 1E+02 0.0036 23.8 9.8 54 252-305 10-63 (81)
84 2efr_A General control protein 45.3 1.5E+02 0.005 25.4 12.1 50 260-309 61-110 (155)
85 2wh5_A Acyl-COA-binding domain 44.5 13 0.00043 30.1 2.6 24 26-49 68-91 (106)
86 4etp_A Kinesin-like protein KA 44.4 59 0.002 31.4 7.8 51 258-308 6-56 (403)
87 1nlw_A MAD protein, MAX dimeri 43.7 60 0.0021 24.6 6.2 40 269-308 40-79 (80)
88 1nkp_A C-MYC, MYC proto-oncoge 43.6 48 0.0016 25.5 5.7 43 269-311 45-87 (88)
89 1nkp_B MAX protein, MYC proto- 43.5 53 0.0018 24.6 5.8 41 270-310 41-81 (83)
90 3u06_A Protein claret segregat 42.9 96 0.0033 30.2 9.0 49 250-298 5-53 (412)
91 2lw1_A ABC transporter ATP-bin 41.5 1.1E+02 0.0039 23.1 8.4 25 277-301 57-81 (89)
92 2qag_B Septin-6, protein NEDD5 40.4 5.9 0.0002 39.0 0.0 53 251-303 351-404 (427)
93 2cqu_A Peroxisomal D3,D2-enoyl 40.2 16 0.00054 30.0 2.6 25 25-49 71-95 (116)
94 2v66_B Nuclear distribution pr 39.9 1.5E+02 0.0052 24.1 9.8 24 260-283 40-63 (111)
95 3flv_A Acyl-COA-binding domain 39.5 18 0.00061 29.9 2.8 24 26-49 84-107 (119)
96 2v71_A Nuclear distribution pr 39.5 2E+02 0.0069 25.4 15.6 63 248-310 56-122 (189)
97 3u59_A Tropomyosin beta chain; 39.4 1.3E+02 0.0046 23.3 13.3 38 250-287 25-62 (101)
98 3fp5_A Acyl-COA binding protei 38.4 18 0.00061 29.2 2.6 25 25-49 63-87 (106)
99 2xzr_A Immunoglobulin-binding 38.1 1.6E+02 0.0055 23.8 8.9 46 265-310 58-103 (114)
100 3m91_A Proteasome-associated A 38.1 1.1E+02 0.0036 21.8 7.0 38 250-287 11-48 (51)
101 2eqb_B RAB guanine nucleotide 37.2 1.6E+02 0.0054 23.6 13.7 45 253-297 17-61 (97)
102 2lw1_A ABC transporter ATP-bin 35.7 1.4E+02 0.0049 22.6 8.9 56 244-299 25-86 (89)
103 1ntv_A Disabled homolog 1; bet 35.0 1.7E+02 0.0058 24.1 8.2 23 62-84 58-80 (152)
104 2zuo_A MVP, major vault protei 34.9 4.6E+02 0.016 28.3 15.0 13 161-173 626-638 (861)
105 1fxk_C Protein (prefoldin); ar 34.0 1.7E+02 0.0058 23.3 7.9 37 253-289 93-129 (133)
106 2kc2_A Talin-1, F1; FERM, adhe 33.5 55 0.0019 27.2 4.9 31 66-111 97-127 (128)
107 3efg_A Protein SLYX homolog; x 33.4 1.5E+02 0.0051 22.4 7.0 48 251-305 10-57 (78)
108 2xnx_M M protein, M1-BC1; cell 33.0 2.3E+02 0.0079 24.2 9.4 85 223-307 13-111 (146)
109 1jnm_A Proto-oncogene C-JUN; B 31.2 1.2E+02 0.0043 21.5 5.9 35 276-310 22-56 (62)
110 2qag_C Septin-7; cell cycle, c 30.2 11 0.00037 36.7 0.0 57 248-304 344-401 (418)
111 1ci6_A Transcription factor AT 27.5 1.7E+02 0.0057 21.1 6.1 12 250-261 25-36 (63)
112 2wt7_A Proto-oncogene protein 27.3 1.7E+02 0.0058 20.9 9.2 10 228-237 4-13 (63)
113 3qh9_A Liprin-beta-2; coiled-c 26.4 2.3E+02 0.0078 22.0 7.0 34 253-286 31-64 (81)
114 2efr_A General control protein 25.9 3.1E+02 0.011 23.4 14.6 36 251-286 73-108 (155)
115 1xr0_B FGFR signalling adaptor 25.8 2.9E+02 0.0098 23.0 8.0 51 151-201 48-101 (129)
116 3na7_A HP0958; flagellar bioge 25.6 3.5E+02 0.012 23.9 15.6 12 256-267 105-116 (256)
117 3m9b_A Proteasome-associated A 25.5 89 0.0031 28.9 5.2 38 250-287 56-93 (251)
118 3qne_A Seryl-tRNA synthetase, 25.1 3.1E+02 0.011 27.4 9.5 20 287-306 82-101 (485)
119 1ykh_B RNA polymerase II holoe 24.6 1.8E+02 0.0061 23.9 6.5 35 250-284 87-121 (132)
120 2dlw_A Docking protein 2, isof 24.0 2.4E+02 0.0081 22.8 7.0 38 151-188 52-92 (113)
121 3so6_A LDL receptor adaptor pr 24.0 1.4E+02 0.0047 23.5 5.6 23 62-84 41-63 (137)
122 2l5g_B Putative uncharacterize 23.9 1.6E+02 0.0055 20.3 5.0 23 269-291 16-38 (42)
123 4dk0_A Putative MACA; alpha-ha 23.8 3.4E+02 0.012 24.4 8.9 73 240-312 69-151 (369)
124 1yke_B RNA polymerase II holoe 23.6 1.8E+02 0.0063 24.5 6.5 34 250-283 87-120 (151)
125 1j0w_A Downstream of tyrosine 23.3 2.1E+02 0.0073 22.7 6.5 38 151-188 45-85 (103)
126 2kup_A Fibroblast growth facto 23.3 3.5E+02 0.012 23.0 9.2 52 152-203 56-110 (146)
127 2b5u_A Colicin E3; high resolu 23.0 3.2E+02 0.011 27.8 9.0 58 255-312 294-357 (551)
128 3k29_A Putative uncharacterize 22.9 3.8E+02 0.013 23.4 11.7 14 268-281 112-125 (169)
129 2e7s_A RAB guanine nucleotide 22.1 3.5E+02 0.012 22.7 8.2 12 260-271 44-55 (135)
130 2oqq_A Transcription factor HY 21.9 2E+02 0.0067 19.8 5.1 31 280-310 7-37 (42)
131 1wle_A Seryl-tRNA synthetase; 21.3 5.2E+02 0.018 25.7 10.3 24 283-306 123-146 (501)
132 1lwu_C Fibrinogen gamma chain; 20.8 3.1E+02 0.011 26.0 8.1 36 269-304 19-54 (323)
No 1
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=100.00 E-value=1.3e-55 Score=448.43 Aligned_cols=253 Identities=80% Similarity=1.214 Sum_probs=207.3
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeec
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEK 81 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~ 81 (318)
.|+|.+|+++++++++.|+..|..+|++++|+++.+|++.||++|++|++||++||.++|++|+++||||++.||.||..
T Consensus 151 ~~lP~~vl~~~~~s~e~~~~~I~~~hk~l~G~s~~eA~~~yL~~a~~lp~YG~~~F~vkd~~g~~l~LGV~~~GI~v~~~ 230 (575)
T 2i1j_A 151 RLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKNTELWLGVDALGLNIYEK 230 (575)
T ss_dssp CCSCHHHHHTBCCCHHHHHHHHHHHHGGGTTCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEECSSEEEEEET
T ss_pred ccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHhccccCCEEEEEEecCCCEEEEEEcCCeeEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCcccccc
Q psy3983 82 EDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNI 161 (318)
Q Consensus 82 ~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~l 161 (318)
+++ +.|...|+|++|.++
T Consensus 231 ~~k--------------------------------------------------------------~~~l~~f~w~~I~~i 248 (575)
T 2i1j_A 231 DDK--------------------------------------------------------------LTPKIGFPWSEIRNI 248 (575)
T ss_dssp TCS--------------------------------------------------------------SSCSEEEEGGGEEEE
T ss_pred CCC--------------------------------------------------------------cccceEecHHHhhcc
Confidence 776 445678999999999
Q ss_pred ccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Q psy3983 162 SFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIA 241 (318)
Q Consensus 162 sf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d~~~vqqmkaqa~eek~~~~~er~~l~~e~~ 241 (318)
+|++++|+|++.+++.++|+|++++++.||+||++|+++|.||+++|+||+++||||||||||||++|++||++|.+|++
T Consensus 249 sf~~k~F~I~~~~~~~~~l~F~t~~~~~ak~i~~lc~~~H~ff~~~r~~d~~e~qqm~~~a~e~~~~~~~e~~~l~~~~~ 328 (575)
T 2i1j_A 249 SFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIA 328 (575)
T ss_dssp EEETTEEEEEESCTTSCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHTTCCSCCC
T ss_pred cCCCCeEEEEEccCCcceeEEEeCCchhHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcccc
Q psy3983 242 AREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLN 316 (318)
Q Consensus 242 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (318)
+|+.||+++.||++||.++++++++++++|.+++++|.+|++++++++++++.|++++.++++++++|+.+++|+
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~~~~~ 403 (575)
T 2i1j_A 329 ARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETKNME 403 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998875
No 2
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=99.97 E-value=6.3e-32 Score=249.24 Aligned_cols=147 Identities=80% Similarity=1.398 Sum_probs=139.7
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeec
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEK 81 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~ 81 (318)
.++|.+++++++|+++.|+..|...|++++|+++.+|+..||++|++|++||++||.++|++|.++|||+++.||.||+.
T Consensus 148 ~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~~A~~~yL~~~~~lp~yG~~~f~v~~~~g~~~~Lgv~~~Gi~v~~~ 227 (294)
T 1ef1_A 148 KLLPQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKGSELWLGVDALGLNIYEQ 227 (294)
T ss_dssp CCSCHHHHHHBCCCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTCCEEEEEEETTEEEEEET
T ss_pred ccCCHHHHhhcCCCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHcccCccCceEEeeecCCCCEEEEEEecCcEEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCcccccc
Q psy3983 82 EDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNI 161 (318)
Q Consensus 82 ~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~l 161 (318)
+++ +.|...|+|++|.++
T Consensus 228 ~~k--------------------------------------------------------------~~~~~~f~w~~I~~~ 245 (294)
T 1ef1_A 228 NDR--------------------------------------------------------------LTPKIGFPWSEIRNI 245 (294)
T ss_dssp TCS--------------------------------------------------------------SSCSEEEEGGGEEEE
T ss_pred CCc--------------------------------------------------------------cccceEEEcccceEe
Confidence 766 344579999999999
Q ss_pred ccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccccccCC
Q psy3983 162 SFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKP 210 (318)
Q Consensus 162 sf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~ 210 (318)
+|.+++|.|++.+++..+++|++++++.||+||++|+++|.||+++|+|
T Consensus 246 ~~~~~~f~i~~~~~~~~~~~f~~~~~~~~k~l~~l~~~~h~f~~~~r~~ 294 (294)
T 1ef1_A 246 SFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMRRRKP 294 (294)
T ss_dssp EEETTEEEEEESSSSSCCEEEECSSHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred eecCCEEEEEEccCccceEEEEeCCHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999998777889999999999999999999999999999986
No 3
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=99.97 E-value=2.8e-31 Score=247.75 Aligned_cols=147 Identities=63% Similarity=1.120 Sum_probs=139.1
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeec
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEK 81 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~ 81 (318)
.++|.+++++++++++.|+.+|...|++++|+++.+|++.||++|++|++||++||.++|++|.++|||+++.||.||+.
T Consensus 168 ~~lP~~~~~~~~~~~~~~~~~I~~~~~~~~g~s~~eA~~~yL~~~~~lp~yG~~~f~v~~~~g~~~~LgI~~~Gi~v~~~ 247 (314)
T 1h4r_A 168 ELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKGTELLLGVDALGLHIYDP 247 (314)
T ss_dssp CCSCHHHHTTSCCCHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEEETTCCEEEEEECSSEEEEECT
T ss_pred hcCCHHHHhhccCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCccCceEEEeecCCCCEEEEEEeCCceEEEeC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCcccccc
Q psy3983 82 EDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNI 161 (318)
Q Consensus 82 ~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~l 161 (318)
+++ ..|...|+|++|.++
T Consensus 248 ~~k--------------------------------------------------------------~~~~~~f~w~~I~~~ 265 (314)
T 1h4r_A 248 ENR--------------------------------------------------------------LTPKISFPWNEIRNI 265 (314)
T ss_dssp TCS--------------------------------------------------------------SSCSEEEEGGGEEEE
T ss_pred CCC--------------------------------------------------------------cccceEEecccceEE
Confidence 766 233468999999999
Q ss_pred ccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccccccCC
Q psy3983 162 SFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKP 210 (318)
Q Consensus 162 sf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~ 210 (318)
+|.+++|.|++.+.+.+.++|++++++.||+||++|+++|.||+++|+|
T Consensus 266 ~~~~~~f~i~~~~~~~~~~~f~~~~~~~~k~i~~l~~~~h~f~~~~r~~ 314 (314)
T 1h4r_A 266 SYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDLFMRRRKA 314 (314)
T ss_dssp EEETTEEEEEESSTTSCCEEEECCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EeeCCEEEEEEcCCCCceEEEEcCCHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999988877799999999999999999999999999999987
No 4
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=99.95 E-value=6e-28 Score=225.77 Aligned_cols=125 Identities=28% Similarity=0.531 Sum_probs=114.2
Q ss_pred hHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeecCCcccccccccccc
Q psy3983 16 PSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKK 95 (318)
Q Consensus 16 ~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~ 95 (318)
.+.|+.+|..+|++++|+++.+|++.||++|++|++||++||.++|..|.++|||+++.||.||+.+.+
T Consensus 168 ~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~a~~l~~yG~~~f~vk~~~~~~~~LgV~~~Gi~v~~~~~k----------- 236 (296)
T 3qij_A 168 TKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLR----------- 236 (296)
T ss_dssp CHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTSCEEEEEECSSEEEEEETTEE-----------
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCceEEEEEcCCCCEEEEEECCCeEEEEeCCCe-----------
Confidence 368999999999999999999999999999999999999999999999999999999999999986544
Q ss_pred CCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCccccccccccceEEEEeCCC
Q psy3983 96 ENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDK 175 (318)
Q Consensus 96 ~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~lsf~~kkF~Ikp~dk 175 (318)
+ ..|+|++|.++||++++|.|++.+.
T Consensus 237 ---------------------------------------------------l---~~f~w~~I~~~s~~~k~F~i~~~~~ 262 (296)
T 3qij_A 237 ---------------------------------------------------I---NRFPWPKVLKISYKRSSFFIKIRPG 262 (296)
T ss_dssp ---------------------------------------------------E---EEEEGGGEEEEEEETTEEEEEEC--
T ss_pred ---------------------------------------------------E---EEEEhhhcCEEEecCCEEEEEEecC
Confidence 2 5899999999999999999998643
Q ss_pred ----CCCceEEEcCCccchHHHHHHhhhcccccc
Q psy3983 176 ----KAPDFVFFAPRVRVNKRILALCMGNHELYM 205 (318)
Q Consensus 176 ----k~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~ 205 (318)
..++++|+++++++||+||++||++|.||+
T Consensus 263 ~~~~~~~~~~f~~~~~~~~k~l~~~c~~~h~ffr 296 (296)
T 3qij_A 263 EQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFFR 296 (296)
T ss_dssp -----CEEEEEECSSHHHHHHHHHHHHHHHHHTC
T ss_pred ccCCccceEEEECCCHHHHHHHHHHHHHhccccC
Confidence 235899999999999999999999999996
No 5
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=99.82 E-value=4.7e-20 Score=161.32 Aligned_cols=132 Identities=20% Similarity=0.297 Sum_probs=113.9
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCC-C----CeEEEeecCCce
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKK-G----TELWLGVDALGL 76 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~k-g----~~~WLgl~k~Gi 76 (318)
.++|.++++..+ +.+|..+|++++|+++.+|++.||++|++|++||++||.+++.. | .++|||+++.||
T Consensus 70 ~~lP~~~~~~~~------~~~i~~~~~~~~g~s~~~A~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~Lgi~~~Gi 143 (206)
T 1mix_A 70 DFLPKEYIKQKG------ERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECV 143 (206)
T ss_dssp GTSCGGGSTTCC------HHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEECCSSCSSCEEEEEEECSSEE
T ss_pred hhCCHHHhhccc------HHHHHHHHHHccCCCHHHHHHHHHHHHHhCcccCceEEEEEEccCCCCCcCcEEEEEcccce
Confidence 478888887643 79999999999999999999999999999999999999996654 4 689999999999
Q ss_pred eeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCc
Q psy3983 77 NIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWS 156 (318)
Q Consensus 77 ~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~ 156 (318)
.||...++ . +...|+|+
T Consensus 144 ~~~~~~~~--------------------------------------------------------------~-~l~~~~~~ 160 (206)
T 1mix_A 144 MRVDEKTK--------------------------------------------------------------E-VIQEWSLT 160 (206)
T ss_dssp EEEETTTC--------------------------------------------------------------C-EEEEEEGG
T ss_pred EEeCCCCC--------------------------------------------------------------c-eeeeeehh
Confidence 99987655 0 13589999
Q ss_pred cccccccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccc
Q psy3983 157 EIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYM 205 (318)
Q Consensus 157 ~I~~lsf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~ 205 (318)
+|.+++|.+++|.|++.+.....+.|.|+. |+.|+.+|.+.|.+++
T Consensus 161 ~I~~~~~~~~~f~i~~~~~~~~~~~~~t~~---~~~i~~Li~~Yi~~~~ 206 (206)
T 1mix_A 161 NIKRWAASPKSFTLDFGDYQDGYYSVQTTE---GEQIAQLIAGYIDIIL 206 (206)
T ss_dssp GCCEEEECSSEEEEECGGGSSSCEEEECSC---HHHHHHHHHTTSCCCC
T ss_pred HeeecccCCCEEEEEeCcccceEEEEECCc---HHHHHHHHHHHHHHhC
Confidence 999999999999999987654568888764 8999999999998763
No 6
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=99.79 E-value=4e-19 Score=158.90 Aligned_cols=137 Identities=20% Similarity=0.310 Sum_probs=114.1
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCC-C----CeEEEeecCCce
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKK-G----TELWLGVDALGL 76 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~k-g----~~~WLgl~k~Gi 76 (318)
.++|.+++++. |+.+|..+|++++|+++.+|++.||++|++|++||++||.+++.. | .++|||+++.||
T Consensus 81 ~~lP~~~~~~~------~~~~I~~~h~~~~g~s~~eA~~~yL~~~~~l~~yG~~~f~v~~~~~g~~~~~~~~LgI~~~GI 154 (222)
T 4f7g_A 81 DFLPKEYVKQK------GERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECV 154 (222)
T ss_dssp GTSCGGGGGGC------CHHHHHHHHHTTTTCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEE
T ss_pred hccCHHHHhhh------hHHHHHHHHHhccCCCHHHHHHHHHHHHhhccccCcEEEEEEEecCCCCCCCCEEEEEcCCcE
Confidence 47888888764 478999999999999999999999999999999999999995543 2 589999999999
Q ss_pred eeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCc
Q psy3983 77 NIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWS 156 (318)
Q Consensus 77 ~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~ 156 (318)
.||....+ .+...++|+
T Consensus 155 ~v~~~~tk---------------------------------------------------------------~~l~~~~~~ 171 (222)
T 4f7g_A 155 MRVDEKTK---------------------------------------------------------------EVIQEWSLT 171 (222)
T ss_dssp EEECTTTC---------------------------------------------------------------CEEEEEEGG
T ss_pred EEEcCCCC---------------------------------------------------------------ceeEeccHH
Confidence 99986544 113688999
Q ss_pred cccccccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhcccccccccCC
Q psy3983 157 EIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKP 210 (318)
Q Consensus 157 ~I~~lsf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~ 210 (318)
+|.+++|.++.|.|+..+.....+.|.|+. |+.|-+++.+.+..++++|+.
T Consensus 172 ~I~~~~~~~~~f~I~~~~~~~~~~~~~T~q---~~~I~~Li~~Yi~~~~~~r~~ 222 (222)
T 4f7g_A 172 NIKRWAASPKSFTLDFGDYQDGYYSVQTTE---GEQIAQLIAGYIDIILKKKKS 222 (222)
T ss_dssp GCCEEEECSSEEEEECCTTSSSCEEEECSC---HHHHHHHHHHHHHHTC-----
T ss_pred HeeeeccCCCEEEEEECCccceEEEEECCc---HHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999977654568888875 899999999999999998863
No 7
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=99.64 E-value=6.6e-16 Score=148.61 Aligned_cols=140 Identities=15% Similarity=0.291 Sum_probs=116.9
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCC----CeEEEeecCCcee
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG----TELWLGVDALGLN 77 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg----~~~WLgl~k~Gi~ 77 (318)
.++|..++++++ ...|..+|..+|+++.|+++.+|++.||++|++|++||+.+|.+++.++ ..+|||++. ||.
T Consensus 175 ~flP~~~~~~~~--~~~~~k~I~~~~k~~~g~s~~eAk~~yL~~~~~l~~yG~~~F~v~~~~~~~~~~~l~lg~~~-GI~ 251 (375)
T 2al6_A 175 RFFPKSLLDSVK--AKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEE-GIS 251 (375)
T ss_dssp GTSCHHHHHSSC--HHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHTTTCCCSCEEEEEEECSSSCEEEEEEEETTT-EEE
T ss_pred HhCCHHHHHHhC--hHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhhcccCCcEEEEEeecCCCCcceEEEEecCC-CEE
Confidence 589999999866 6789999999999999999999999999999999999999999966554 578999965 999
Q ss_pred eeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCcc
Q psy3983 78 IYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSE 157 (318)
Q Consensus 78 Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~ 157 (318)
+|...+. .|...++|++
T Consensus 252 ~~~~~~~---------------------------------------------------------------~~~~~~~f~~ 268 (375)
T 2al6_A 252 YLTDKGA---------------------------------------------------------------NPTHLADFNQ 268 (375)
T ss_dssp EESSTTS---------------------------------------------------------------CEEEEECGGG
T ss_pred EEeCCCC---------------------------------------------------------------ceEEEechhH
Confidence 9875332 1246789999
Q ss_pred cccccc-----cc--ceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhccccccccc
Q psy3983 158 IRNISF-----ND--RKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRR 208 (318)
Q Consensus 158 I~~lsf-----~~--kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr 208 (318)
|.++++ ++ ..|.|...+. ...+.|.++++..|+.|..||.|.|.++...+
T Consensus 269 I~~i~~~~~~~~~~~~~~~I~v~~~-~~~~~f~~~t~~~a~~i~~Li~gY~rl~~~~~ 325 (375)
T 2al6_A 269 VQTIQYSNSEDKDRKGMLQLKIAGA-PEPLTVTAPSLTIAENMADLIDGYCRLVNGAT 325 (375)
T ss_dssp EEEEEEECCSSSCCCEEEEEEETTC-SSCEEEEESSHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccEEEEEeccccCCceEEEEEECCC-CCcEEEEeCCHHHHHHHHHHHhhheEEecCCC
Confidence 999976 23 4577776543 46799999999999999999999988887443
No 8
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=99.63 E-value=7.7e-16 Score=158.87 Aligned_cols=132 Identities=11% Similarity=0.238 Sum_probs=115.6
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHc----cCCCHHHHHHHHHHHH-hccCcccceeEEeecCCC-----CeEEEee
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEH----KGMLREDAMMEYLKIA-QDLEMYGVNYFEIKNKKG-----TELWLGV 71 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~----kG~~~~eAe~efLkva-q~Le~yGv~YFgL~d~kg-----~~~WLgl 71 (318)
+++|.++++.+ .+.+.|+..|..+|+++ .|+++.+|++.||++| ++|++||+.||.+++.+| +++|||+
T Consensus 421 ~~lP~~~l~~~-~~~~~w~~~I~~~hkk~~~~~~g~s~~eAk~~yL~~a~~~lp~YG~~fF~vk~~~g~~lp~~~l~LgV 499 (655)
T 3pvl_A 421 TYIPDREITPL-KNLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKWPLLFSRFYEAYKFSGPPLPKSDVIVAV 499 (655)
T ss_dssp HHSCGGGCCSS-SCHHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHHHCTTTSCEEEEEEEEESSCCSCSEEEEEE
T ss_pred HhCCHHHHhcc-CCHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhccccCcEEEEEEecCCCCCCCccEEEEE
Confidence 36899988876 37899999999999999 9999999999999998 899999999999976666 6899999
Q ss_pred cCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCccccccccc
Q psy3983 72 DALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKI 151 (318)
Q Consensus 72 ~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~ 151 (318)
++.||.||+..++ . ..
T Consensus 500 n~~GV~v~d~~~k--------------------------------------------------------------~--ll 515 (655)
T 3pvl_A 500 NWTGVYFVDEQEQ--------------------------------------------------------------V--LL 515 (655)
T ss_dssp ETTEEEEECTTCC--------------------------------------------------------------E--EE
T ss_pred cCCceEEEcCCCc--------------------------------------------------------------e--EE
Confidence 9999999987555 1 24
Q ss_pred CccCcccccccccc------ceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhc
Q psy3983 152 GFPWSEIRNISFND------RKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGN 200 (318)
Q Consensus 152 ~f~W~~I~~lsf~~------kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~ 200 (318)
+|+|++|.+++|++ ++|+|.+.+ ...++|+|++....+.||..+++-
T Consensus 516 ~f~~~eI~~is~~~~~~~~~~~ftl~~~~--~~~~~F~T~~a~~I~~LI~~yi~~ 568 (655)
T 3pvl_A 516 ELSFPEIMAVSSSRGTKMMAPSFTLATIK--GDEYTFTSSNAEDIRDLVVTFLEG 568 (655)
T ss_dssp EEEGGGEEEEEEECCCSSSCCEEEEEETT--SCEEEEECTTHHHHHHHHHHHHHH
T ss_pred EechhHceEEeccCcccccccEEEEEecc--CceEEEEcCCHHHHHHHHHHHHHH
Confidence 79999999999997 699999764 357999999999999999988763
No 9
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=99.62 E-value=1.3e-15 Score=154.99 Aligned_cols=94 Identities=49% Similarity=0.848 Sum_probs=83.8
Q ss_pred HHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHh
Q psy3983 42 YLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQD 119 (318)
Q Consensus 42 fLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe 119 (318)
+-.||.+|++-..+|||| .|++|...||++++ ++.+|+++...|+.|.|+|+|||++|...+.++
T Consensus 30 l~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k-------------~i~~q~~~~~~~~~L~FRvkfy~~~~~~~l~d~ 96 (575)
T 2i1j_A 30 FDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYK-------------KVMQQDVKKENPLQFKFRAKFYPEDVADELIQE 96 (575)
T ss_dssp HHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTS-------------BGGGSCBCCCSSEEEEEEESSCCSSHHHHCCSH
T ss_pred HHHHHHHcCCCCccceeEEEEecCcchhHhhccc-------------cHHHhcccCCCCeEEEEEEEEcCCChhhhcCCH
Confidence 345788888889999999 68889999999987 366666777889999999999999998778999
Q ss_pred HHHHHHHHHhhhhhhc-CCCCCCCcccccc
Q psy3983 120 ITLRLFYLQVSRSAGS-RVRFPPGPNCLLT 148 (318)
Q Consensus 120 ~TRylf~LQlK~di~~-rl~C~~~~a~lL~ 148 (318)
+||||||+|+|.||++ +++|+++.|+.|+
T Consensus 97 ~t~~LlYlQvk~dIl~G~l~c~~e~a~~LA 126 (575)
T 2i1j_A 97 ITLKLFYLQVKNAILSDEIYCPPETSVLLA 126 (575)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 9999999999999999 8999999999887
No 10
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=99.60 E-value=2.2e-15 Score=143.82 Aligned_cols=131 Identities=20% Similarity=0.299 Sum_probs=109.5
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCC-C----CeEEEeecCCce
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKK-G----TELWLGVDALGL 76 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~k-g----~~~WLgl~k~Gi 76 (318)
.++|.+++... + +..|...|++++|+++.+|++.||++|++|++||++||.+++.. | .++|||+++.||
T Consensus 235 ~~lP~~~~~~~----~--e~~I~~~~~~~~g~s~~eA~~~yL~~~~~l~~yG~~~f~vk~~~~g~~~~~~~~LgI~~~GI 308 (371)
T 3ivf_A 235 DFLPKEYVKQK----G--ERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECV 308 (371)
T ss_dssp GTSCGGGTTSC----H--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHSTTTTCEEEEEEEECTTSSCEEEEEEEECSSEE
T ss_pred ccCCHHHhCch----H--HHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCcEEEEEEEeccCCCCCccEEEEEcCCcE
Confidence 47888887642 2 78899999999999999999999999999999999999995432 2 379999999999
Q ss_pred eeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCc
Q psy3983 77 NIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWS 156 (318)
Q Consensus 77 ~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~ 156 (318)
.||+...+ .+...|||+
T Consensus 309 ~v~~~~~k---------------------------------------------------------------~~l~~~~~~ 325 (371)
T 3ivf_A 309 MRVDEKTK---------------------------------------------------------------EVIQEWSLT 325 (371)
T ss_dssp EEEETTTC---------------------------------------------------------------CEEEEEEGG
T ss_pred EEEcCCCC---------------------------------------------------------------ceEEeeehh
Confidence 99986554 113689999
Q ss_pred cccccccccceEEEEeCCCCCCceEEEcCCccchHHHHHHhhhccccc
Q psy3983 157 EIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELY 204 (318)
Q Consensus 157 ~I~~lsf~~kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~Ff 204 (318)
+|.++++.++.|.|++.+.....+.|.|+. +..|-+|+.+.+...
T Consensus 326 ~I~~~~~~~~~f~I~~~~~~~~~~~~~T~~---~~~I~~Li~~Yi~~i 370 (371)
T 3ivf_A 326 NIKRWAASPKSFTLDFGDYQDGYYSVQTTE---GEQIAQLIAGYIDII 370 (371)
T ss_dssp GCCEEEEETTEEEEECGGGSSSCEEEECSC---HHHHHHHHHHHHHC-
T ss_pred heeeeecCCCEEEEEECCccCcEEEEECCh---HHHHHHHHHHHHHHh
Confidence 999999999999999977654568888875 788999999987654
No 11
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=99.59 E-value=1.7e-15 Score=142.46 Aligned_cols=131 Identities=21% Similarity=0.410 Sum_probs=102.1
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHc---cCCCHH--HHHHHHHHHHhccCcccceeEEee--------cCCCCeEE
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEH---KGMLRE--DAMMEYLKIAQDLEMYGVNYFEIK--------NKKGTELW 68 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~---kG~~~~--eAe~efLkvaq~Le~yGv~YFgL~--------d~kg~~~W 68 (318)
+++|.++++. +.+.|+.+|..+|+++ .|+++. +|++.||++|++|++||++||.++ +.++.++|
T Consensus 169 ~~lP~~~~~~---~~~~~~~~I~~~h~~~~~~~g~s~~~a~a~~~yL~~~~~lp~yG~~~f~v~~~~~~~g~~~~~~~~~ 245 (322)
T 4dxa_B 169 SIVPVTKLKS---KAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFFTGQIFTKASPSNHKVIPVY 245 (322)
T ss_dssp TTSCTTTTTT---TGGGSHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHTSTTTTCEEEEEEEECC-------EEEEE
T ss_pred hhCCHHHHhc---CHHHHHHHHHHHHHhcccccCCChhHHHHHHHHHHHHhcCCCcCeEEEEEEEeccCCCCccCCCeEE
Confidence 4789988875 4567999999999999 999875 569999999999999999999995 23346899
Q ss_pred EeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccc
Q psy3983 69 LGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLT 148 (318)
Q Consensus 69 Lgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~ 148 (318)
||++..||.||+..++. + |
T Consensus 246 LgV~~~Gv~v~~~~tk~--~----------------------------------------------------------l- 264 (322)
T 4dxa_B 246 VGVNIKGLHLLNMETKA--L----------------------------------------------------------L- 264 (322)
T ss_dssp EEECSSEEEEEETTTCC--E----------------------------------------------------------E-
T ss_pred EEEccCceEEEcCCCce--e----------------------------------------------------------e-
Confidence 99999999999976661 0 1
Q ss_pred cccCccCcccc-ccccccceEEEEeCCCCCCceEEEcCCc-cchHHHHHHhhh
Q psy3983 149 PKIGFPWSEIR-NISFNDRKFIIKPIDKKAPDFVFFAPRV-RVNKRILALCMG 199 (318)
Q Consensus 149 p~~~f~W~~I~-~lsf~~kkF~Ikp~dkk~~~~~F~~~~~-~~~K~iw~lcv~ 199 (318)
..++|++|. ++++.++.|.|++.+.+ ..+.|.|+.. ++|+.|..+|-+
T Consensus 265 --~~~~~~~isw~~s~~~~~f~i~~~~~~-~~~~~~t~q~~~i~~li~~~~~~ 314 (322)
T 4dxa_B 265 --ISLKYGCFMWQLGDTDTCFQIHSMENK-MSFIVHTKQAGLVVKLLMKLNGQ 314 (322)
T ss_dssp --EEEETTSEEEEECSSTTEEEEEESSSC-CEEEEECTTHHHHHHHHHHHHHT
T ss_pred --eccccceeEEeecCCCCEEEEEECCCC-ccEEEEeCcHHHHHHHHHHHHHH
Confidence 234444443 25578899999998765 3577877775 899999999865
No 12
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=99.54 E-value=1.2e-14 Score=145.61 Aligned_cols=123 Identities=24% Similarity=0.490 Sum_probs=104.4
Q ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCC---CeEEEeecCCceeeeecCCccccccccccccC
Q psy3983 20 ESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG---TELWLGVDALGLNIYEKEDNLTNVMSQDVKKE 96 (318)
Q Consensus 20 e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg---~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~ 96 (318)
+.+|...|+.++|+++.+|++.||++|++|++||++||.++++.+ ..+|||++..||.||+.+++
T Consensus 418 ~~~I~~~~~~~~g~s~~eA~~~yL~~~~~lp~yG~~~F~v~~~~~~~~~~l~LgV~~~GI~v~~~~~k------------ 485 (555)
T 3au4_A 418 RASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVECKEGGFPQELWLGVSADAVSVYKRGEG------------ 485 (555)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHTTSTTTTCEEEEEEEEESSSCSEEEEEECSSEEEEEETTCS------------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCcCceEEEEEecCCCCCceEEEEEcccceEEECCCCC------------
Confidence 899999999999999999999999999999999999999966554 68999999999999987655
Q ss_pred CCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCccccccc-cccceEEEEeCCC
Q psy3983 97 NPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNIS-FNDRKFIIKPIDK 175 (318)
Q Consensus 97 ~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~~ls-f~~kkF~Ikp~dk 175 (318)
.+...|+|++|.+++ +.++.|.|...++
T Consensus 486 ---------------------------------------------------~~l~~~~~~~I~~~~~~~~~~f~i~~~~~ 514 (555)
T 3au4_A 486 ---------------------------------------------------RPLEVFQYEHILSFGAPLANTYKIVVDER 514 (555)
T ss_dssp ---------------------------------------------------SCSEEEEGGGEEEEEEEETTEEEEEETTE
T ss_pred ---------------------------------------------------eeEEEEEhhheeeecCCCCCEEEEEECCc
Confidence 113589999999998 4779999998753
Q ss_pred CCCceEEEcCCccchHHHHHHhhhcccccccccCCC
Q psy3983 176 KAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPD 211 (318)
Q Consensus 176 k~~~~~F~~~~~~~~K~iw~lcv~~H~Ff~~rr~~d 211 (318)
.+.|.|+. +..|-.|+.+.+..++.+|...
T Consensus 515 ---~l~f~T~q---a~~i~~LI~~Yi~~l~~~r~~~ 544 (555)
T 3au4_A 515 ---ELLFETSE---VVDVAKLMKAYISMIVKKRYST 544 (555)
T ss_dssp ---EEEEECTT---HHHHHHHHHHHHHHHHHHHCC-
T ss_pred ---EEEEECCC---HHHHHHHHHHHHHHHHHhhhcc
Confidence 58999865 6678888888888887766543
No 13
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=99.52 E-value=8.7e-15 Score=134.76 Aligned_cols=95 Identities=45% Similarity=0.800 Sum_probs=84.1
Q ss_pred HHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHh
Q psy3983 42 YLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQD 119 (318)
Q Consensus 42 fLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe 119 (318)
+-.+|++|++-..+|||| .+++|...||++++ ++.+|+++...|+.|.|+|+|||+++...+.++
T Consensus 27 ~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~-------------~l~~q~~~~~~~~~l~fr~kf~~~~~~~~l~~~ 93 (294)
T 1ef1_A 27 FDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNK-------------KVTAQDVRKESPLLFKFRAKFYPEDVSEELIQD 93 (294)
T ss_dssp HHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSS-------------BGGGSCBCCCSSEEEEEEESSCCSCHHHHCCSH
T ss_pred HHHHHHHcCCCCcceeEEEEECCCCceeeccccc-------------CHHhhccCCCCCEEEEEEEEEECCChHHhhccH
Confidence 445788889999999999 68889999999987 356666667789999999999999998778999
Q ss_pred HHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983 120 ITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP 149 (318)
Q Consensus 120 ~TRylf~LQlK~di~~-rl~C~~~~a~lL~p 149 (318)
+||||||+|+|.|+++ +++|+.+.|+.|++
T Consensus 94 ~~~~l~y~Q~~~dil~g~~~~~~e~a~~Laa 124 (294)
T 1ef1_A 94 ITQRLFFLQVKEGILNDDIYCPPETAVLLAS 124 (294)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCcccCCHHHHHHHHH
Confidence 9999999999999999 89999999999883
No 14
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=99.47 E-value=2e-14 Score=133.93 Aligned_cols=95 Identities=37% Similarity=0.683 Sum_probs=82.9
Q ss_pred HHHHHhccCcccceeEEe-ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhH
Q psy3983 42 YLKIAQDLEMYGVNYFEI-KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDI 120 (318)
Q Consensus 42 fLkvaq~Le~yGv~YFgL-~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~ 120 (318)
+-.||++|++-+.+|||| ...++...||++++ ++.+|.++...|+.|.|+|+|||+++...+.+++
T Consensus 48 ~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~~-------------~i~~q~~~~~~~~~l~fr~kf~~~~~~~~l~~~~ 114 (314)
T 1h4r_A 48 FDLVCRTLGLRETWFFGLQYTIKDTVAWLKMDK-------------KVLDHDVSKEEPVTFHFLAKFYPENAEEELVQEI 114 (314)
T ss_dssp HHHHHHHHTCCCGGGEEEEEEETTEEEECCTTS-------------BGGGSSCCCSSSEEEEEEESSCCSSHHHHCCSHH
T ss_pred HHHHHHHhCCCCCccceEEEEeCCcCeeCCCcc-------------CHHHcCCCCCCCEEEEEEEEEecCCchhhhcCHH
Confidence 345788899999999999 44678889999887 3566666667899999999999999987799999
Q ss_pred HHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983 121 TLRLFYLQVSRSAGS-RVRFPPGPNCLLTP 149 (318)
Q Consensus 121 TRylf~LQlK~di~~-rl~C~~~~a~lL~p 149 (318)
||||||+|+|.|+++ +++|++++|+.|++
T Consensus 115 ~~~l~y~Q~~~dil~g~~~~~~e~a~~Laa 144 (314)
T 1h4r_A 115 TQHLFFLQVKKQILDEKIYCPPEASVLLAS 144 (314)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccCCHHHHHHHHH
Confidence 999999999999999 89999999999883
No 15
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=99.46 E-value=1.7e-14 Score=134.81 Aligned_cols=93 Identities=24% Similarity=0.433 Sum_probs=78.9
Q ss_pred HHHHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHH
Q psy3983 41 EYLKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQ 118 (318)
Q Consensus 41 efLkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~q 118 (318)
-+-.||++|++-..+|||| .|.++...||+++++ +.+|. ...|+.|.|+|||||++|. .+.+
T Consensus 43 l~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~-------------i~~q~--~~~~~~l~frvkfy~~~~~-~l~~ 106 (296)
T 3qij_A 43 LLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKE-------------IKKQV--RGVPWNFTFNVKFYPPDPA-QLTE 106 (296)
T ss_dssp HHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSB-------------HHHHC-----CCEEEEEESSCCSCGG-GSSC
T ss_pred HHHHHHHHcCCCCcceeEEEEEcCCCccchhccchh-------------HHHhc--CCCCcEEEEEEEEeCCCch-hccC
Confidence 3456888899999999999 677788999999873 44442 3468999999999999998 6999
Q ss_pred hHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983 119 DITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP 149 (318)
Q Consensus 119 e~TRylf~LQlK~di~~-rl~C~~~~a~lL~p 149 (318)
++||||||+|+|+||++ +++|++++|++|++
T Consensus 107 ~~tr~l~ylQ~~~dil~G~~~c~~e~a~~LAA 138 (296)
T 3qij_A 107 DITRYYLCLQLRQDIVAGRLPCSFATLALLGS 138 (296)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 99999999999999999 89999999999983
No 16
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.16 E-value=1.9e-11 Score=124.56 Aligned_cols=101 Identities=16% Similarity=0.246 Sum_probs=77.7
Q ss_pred HHHHHHHhccCcccceeEEe--ecC-CCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHH
Q psy3983 40 MEYLKIAQDLEMYGVNYFEI--KNK-KGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEI 116 (318)
Q Consensus 40 ~efLkvaq~Le~yGv~YFgL--~d~-kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL 116 (318)
--+..+|.+|+....+|||| .+. ++...||.++++ |.+..++ . .++...+++.+.|||+|||+|+.+.+
T Consensus 36 ~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~---~~~~~~~----~-~~~~~~~~~~~~~rvrf~p~~~~~l~ 107 (656)
T 2j0j_A 36 GIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMG---VSNVREK----F-ELAHPPEEWKYELRIRYLPKGFLNQF 107 (656)
T ss_dssp HHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSB---HHHHHHH----H-TTTSCTTSEEEEEEECCCCTTHHHHH
T ss_pred HHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCc---HHHHHhh----h-cccCCCcceEEEEEEEEcCCCHHHHH
Confidence 33556888999999999999 455 688999999984 1110000 0 12344578999999999999999877
Q ss_pred HHhH-HHHHHHHHhhhhhhc-CCC-CCCCcccccc
Q psy3983 117 IQDI-TLRLFYLQVSRSAGS-RVR-FPPGPNCLLT 148 (318)
Q Consensus 117 ~qe~-TRylf~LQlK~di~~-rl~-C~~~~a~lL~ 148 (318)
.++. |+|+||+|+|.|+++ +++ |+.+.|..|+
T Consensus 108 ~~d~~~~~ylf~Q~r~D~~~~~~~~~~~~~al~La 142 (656)
T 2j0j_A 108 TEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLG 142 (656)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHhcccccccHhHHHHHH
Confidence 7766 899999999999999 775 8888887665
No 17
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=99.14 E-value=1.5e-11 Score=117.39 Aligned_cols=93 Identities=17% Similarity=0.265 Sum_probs=72.6
Q ss_pred HHHHHhccCcccceeEEe--ec----CCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHH
Q psy3983 42 YLKIAQDLEMYGVNYFEI--KN----KKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEE 115 (318)
Q Consensus 42 fLkvaq~Le~yGv~YFgL--~d----~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~e 115 (318)
+-.+|.+|++-..+|||| .+ +++...||+++++ +.+|+. ..++.|.|++||||+|+...
T Consensus 112 ~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~-------------l~~q~~--~~~~~l~frvKf~~~d~~~~ 176 (371)
T 3ivf_A 112 LMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRT-------------LREQGV--EEHETLLLRRKFFYSDQNVD 176 (371)
T ss_dssp HHHHHHHTTCSCGGGEEEECCC----------CCCTTSB-------------TGGGTC--CTTCEEEEEECCCCBCSSCB
T ss_pred HHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCch-------------hHhhCC--CCCceEEEEEEEecCCcccc
Confidence 456889999999999999 33 2567899988763 445542 34678999999999887765
Q ss_pred HHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983 116 IIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP 149 (318)
Q Consensus 116 L~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p 149 (318)
+.++.||||||+|+|.|+++ +++|++++|+.|++
T Consensus 177 ~~D~~~~~l~y~Q~~~dil~G~~~c~~e~a~~LAA 211 (371)
T 3ivf_A 177 SRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAG 211 (371)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhHHHhCceeecCHHHHHHHHH
Confidence 78999999999999999999 89999999999983
No 18
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=99.07 E-value=1.3e-09 Score=106.46 Aligned_cols=135 Identities=10% Similarity=0.172 Sum_probs=103.4
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCC--CCeEEEeecCCceeee
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKK--GTELWLGVDALGLNIY 79 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~k--g~~~WLgl~k~Gi~Iy 79 (318)
+++|..+++.. +...|...|...|+.+.|+++.+|.+.||+.+++|++||+.+|.++... +.+.||.+...||.+.
T Consensus 195 ~flP~~l~~~i--k~k~~rk~I~~~~kk~~~ls~~eakl~YL~~l~~Lp~yG~e~F~vk~~s~~~~~~~L~Vg~~GIs~~ 272 (392)
T 4eku_A 195 LFFPKQMQENL--KPKQFRKMIQQTFQQYASLREEECVMKFFNTLAGFANIDQETYRCELIQGWNITVDLVIGPKGIRQL 272 (392)
T ss_dssp GTSCHHHHHHS--CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTSSCCSCEEEEEEEESSSCCCEEEEEETTEEEEE
T ss_pred HhcCHHHHhhc--CHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhccCcEEEEEEeccCCcceeEEEEcCCcEEEE
Confidence 47899999875 4778999999999999999999999999999999999999999995433 3456666666699875
Q ss_pred ecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCcccc
Q psy3983 80 EKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIR 159 (318)
Q Consensus 80 ~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~I~ 159 (318)
....+ .|...++|++|.
T Consensus 273 ~~k~~---------------------------------------------------------------~~~~~~~f~~I~ 289 (392)
T 4eku_A 273 TSQDA---------------------------------------------------------------KPTCLAEFKQIR 289 (392)
T ss_dssp CSSCS---------------------------------------------------------------CCEEEECGGGBC
T ss_pred CCCCC---------------------------------------------------------------ceeEEechHHce
Confidence 43222 013567899999
Q ss_pred cccccc---ce--EEEEeCCCCCCceEEEcCCccchHHHHHHhhhccc
Q psy3983 160 NISFND---RK--FIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE 202 (318)
Q Consensus 160 ~lsf~~---kk--F~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~~H~ 202 (318)
+|+... ++ |.|...+. ...+.|.+++...|+.++.|+.|...
T Consensus 290 ~Is~~~~s~~~~~v~I~~~~~-~~~l~~~~~s~~~A~~~~~LidGY~R 336 (392)
T 4eku_A 290 SIRCLPLEEGQAVLQLGIEGA-PQALSIKTSSLAEAENMADLIDGYCR 336 (392)
T ss_dssp CCCEEEETTTEEEEEECBTTC-SSCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccCCceEEEEEECCC-CcceEEEeCCHHHHHHHHHHHHHHHh
Confidence 997643 34 44544443 23689999999999999998876433
No 19
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=98.99 E-value=2.6e-10 Score=109.68 Aligned_cols=100 Identities=18% Similarity=0.250 Sum_probs=76.4
Q ss_pred HHHHHHHHhccCcccceeEEe--ec-CCCCeEEEeecCCceeeeecCCccccccccc--cccCCCeeEEEEEeecCCCch
Q psy3983 39 MMEYLKIAQDLEMYGVNYFEI--KN-KKGTELWLGVDALGLNIYEKEDNLTNVMSQD--VKKENPLQFKFRAKFYPEDVV 113 (318)
Q Consensus 39 e~efLkvaq~Le~yGv~YFgL--~d-~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~--i~~~~p~~~~f~vkfyp~d~~ 113 (318)
.--+..+|++|++-..+|||| .+ .++...||.+++. |. .+.++. .....++.|.|||+|||+++.
T Consensus 35 ~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~---l~-------~~~~k~~~~~~~~~~~l~fRvrF~~~~~~ 104 (375)
T 2al6_A 35 RGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMG---VS-------NVREKFELAHPPEEWKYELRIRYLPKGFL 104 (375)
T ss_dssp HHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSB---HH-------HHHHHHHTTSCGGGEEEEEEECCCCTTHH
T ss_pred HHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccc---hh-------hhhhhhhcccCCCceEEEEEEEEecCCHH
Confidence 334567899999999999999 34 3567899999874 11 111110 012357999999999999998
Q ss_pred HHHHHh-HHHHHHHHHhhhhhhc-C-CCCCCCcccccc
Q psy3983 114 EEIIQD-ITLRLFYLQVSRSAGS-R-VRFPPGPNCLLT 148 (318)
Q Consensus 114 ~eL~qe-~TRylf~LQlK~di~~-r-l~C~~~~a~lL~ 148 (318)
+...++ .|+++||+|+|.|+++ + ..|+.++|+.|+
T Consensus 105 ~l~~~D~~t~~~~y~Q~r~Dil~g~~~~~~~e~al~LA 142 (375)
T 2al6_A 105 NQFTEDKPTLNFFYQQVKNDYMLEIADQVDQEIALKLG 142 (375)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred HhhhcCHHHHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 766555 7999999999999999 6 579999999987
No 20
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=98.58 E-value=3.7e-07 Score=93.03 Aligned_cols=139 Identities=14% Similarity=0.312 Sum_probs=107.1
Q ss_pred CCCchhhHhhcCCChHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhccCcccceeEEeecCCC----CeEEEeecCCcee
Q psy3983 2 SVSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG----TELWLGVDALGLN 77 (318)
Q Consensus 2 ~~~p~~~~~q~~~~~~~~e~~I~~~hk~~kG~~~~eAe~efLkvaq~Le~yGv~YFgL~d~kg----~~~WLgl~k~Gi~ 77 (318)
.++|..+++.++ ...+..+|..+|+.+.|+++.++++.||+.++.++.||++.|.+.+.+| ..+.||++. ||.
T Consensus 175 ~fiP~~~~~~~~--~~~~~k~i~~~~k~~~~~~~~~~~lk~l~~l~~~~~yg~e~f~~~~~~g~~~~~~l~vg~~~-GI~ 251 (656)
T 2j0j_A 175 RFFPKSLLDSVK--AKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEE-GIS 251 (656)
T ss_dssp GTSCHHHHHHSC--HHHHHHHHHHHHGGGTTCCHHHHHHHHHHHHGGGCCTTSEEEEEEEESSSEEEEEEEEETTT-EEE
T ss_pred HhCCHHHHHHhh--hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHhccccccCceEEeeccCCCCcccEEEEECCCC-CeE
Confidence 478999999866 6678999999999999999999999999999999999999999988777 567777755 888
Q ss_pred eeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHHHHHHHHhhhhhhcCCCCCCCcccccccccCccCcc
Q psy3983 78 IYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSE 157 (318)
Q Consensus 78 Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TRylf~LQlK~di~~rl~C~~~~a~lL~p~~~f~W~~ 157 (318)
....... .|...+.|++
T Consensus 252 ~~~~~~~---------------------------------------------------------------~~~~~~~f~~ 268 (656)
T 2j0j_A 252 YLTDKGA---------------------------------------------------------------NPTHLADFNQ 268 (656)
T ss_dssp ECCSSSS---------------------------------------------------------------CCEEEECGGG
T ss_pred EECCCCC---------------------------------------------------------------Cceecccccc
Confidence 5432111 1234557899
Q ss_pred ccccccc----c---ceEEEEeCCCCCCceEEEcCCccchHHHHHHhhh--------cccccccc
Q psy3983 158 IRNISFN----D---RKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMG--------NHELYMRR 207 (318)
Q Consensus 158 I~~lsf~----~---kkF~Ikp~dkk~~~~~F~~~~~~~~K~iw~lcv~--------~H~Ff~~r 207 (318)
|.+|++. + +.+.+... .....+.+.+++...+..+..+|-| +|.|+.+.
T Consensus 269 I~~I~~~~~~~~~~k~~~~~~~~-~~~~~l~i~~~s~~~ae~~a~LidGy~rL~~~~~~~~~~~~ 332 (656)
T 2j0j_A 269 VQTIQYSNSEDKDRKGMLQLKIA-GAPEPLTVTAPSLTIAENMADLIDGYCRLVNGATQSFIIRP 332 (656)
T ss_dssp EEEBCEEECSSSSCCEEEEEEES-SCSSCEEEEESSHHHHHHHHHHHHHHHHHHSCCCSCCBCCC
T ss_pred eeEEEEeeccccCCcceEEEEec-cCCcceEEECCCchhhHHHHHhhcceeeeeccCccceeecc
Confidence 9999776 2 23344333 3344689999999999999999877 56666543
No 21
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=98.51 E-value=7.5e-09 Score=97.20 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=46.2
Q ss_pred cccccCCCeeEEEEEee-cCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983 91 QDVKKENPLQFKFRAKF-YPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP 149 (318)
Q Consensus 91 q~i~~~~p~~~~f~vkf-yp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p 149 (318)
+.+..++| .+.|+.+| ||+++...+.+++||||||+|+|.||++ +++|+.++|+.|++
T Consensus 83 ~~~~~~~p-~l~~rr~~f~~~~~~~~~~d~~t~~l~y~Q~~~dil~G~~~c~~e~a~~LAA 142 (322)
T 4dxa_B 83 LDPQRETP-QLFLRRDVRLPLEVEKQIEDPLAILILFDEARYNLLKGFYTAPDAKLITLAS 142 (322)
T ss_dssp CCCCCCCC-EEEEEECTTCCHHHHTTCCCHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred CCCCCCce-EEEEEEeecccccccccccCHHHHHHHHHHHHHHHHCCcccCCHHHHHHHHH
Confidence 33344455 56666665 5657766688999999999999999999 89999999999984
No 22
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=98.45 E-value=6.5e-08 Score=96.95 Aligned_cols=101 Identities=10% Similarity=0.160 Sum_probs=69.8
Q ss_pred HHhccCccc-ceeEEe-ecCCCCeEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCCchHHHHHhHHH
Q psy3983 45 IAQDLEMYG-VNYFEI-KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITL 122 (318)
Q Consensus 45 vaq~Le~yG-v~YFgL-~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d~~~eL~qe~TR 122 (318)
+|.+|++-. .+|||| .+.++...||..+.. |++...+.....+.+.....++.|.|+++||++.. ..+.+++|+
T Consensus 246 v~~~lgL~e~~~~FgL~~~~~~~~~~L~~~~~---i~D~~~~we~~~~~~~~~~~~~~l~fR~~ff~~~~-~~~~d~~~~ 321 (555)
T 3au4_A 246 LIRGLAMEDSRNMFALFEYNGHVDKAIESRTV---VADVLAKFEKLAATSEVGDLPWKFYFKLYCFLDTD-NVPKDSVEF 321 (555)
T ss_dssp HHHHTTCTTCCSEEEEEEESSSCEEECCTTSB---HHHHHHHHHHHTTSCCTTCCCCEEEEEEEECSCCT-TCCTTSHHH
T ss_pred HHHHcCCCCCCCceEEEEEeCCeeEecCCCCc---hhHHHHHHHHHhhccCCCCCceEEEEEEEeecCcc-cCCcchHHH
Confidence 888999986 789999 545566778866542 22100000000000111245899999999996543 335677999
Q ss_pred HHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983 123 RLFYLQVSRSAGS-RVRFPPGPNCLLTP 149 (318)
Q Consensus 123 ylf~LQlK~di~~-rl~C~~~~a~lL~p 149 (318)
||||+|++.|+++ +++|+.++|+.|++
T Consensus 322 ~lly~Q~~~dil~G~~~~~~e~a~~LAA 349 (555)
T 3au4_A 322 AFMFEQAHEAVIHGHHPAPEENLQVLAA 349 (555)
T ss_dssp HHHHHHHHHHHHTTCSCCCHHHHHHHHH
T ss_pred HhhHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 9999999999999 89999999999984
No 23
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=98.45 E-value=1.4e-07 Score=97.51 Aligned_cols=103 Identities=13% Similarity=0.108 Sum_probs=68.1
Q ss_pred HHHHhccCcccceeEEe--ecCCCCeEEEeecCCceeeeecCCcccccc-ccc-cccCCCeeEEEEEeecCCCchHHHHH
Q psy3983 43 LKIAQDLEMYGVNYFEI--KNKKGTELWLGVDALGLNIYEKEDNLTNVM-SQD-VKKENPLQFKFRAKFYPEDVVEEIIQ 118 (318)
Q Consensus 43 Lkvaq~Le~yGv~YFgL--~d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~-~q~-i~~~~p~~~~f~vkfyp~d~~~eL~q 118 (318)
-.+|.+|++-..+|||| .+.++...|+..+. .|.....+.-... ++. .+...|+.|.|+++||+|++. .+.+
T Consensus 291 ~~V~~~LgL~e~~~FgL~~~~~dk~~sll~~~e---~vlD~l~~~E~~~k~~~~~~~~~~~~L~FRvkff~p~~~-~~~d 366 (655)
T 3pvl_A 291 NALADKISLKDRFGFSLYIALFDKVSSLGSGSD---HVMDAISQCEQYAKEQGAQERNAPWRLFFRKEVFTPWHN-PSED 366 (655)
T ss_dssp HHHHHHTTCSSCTTEEEEEEETTEEEEEETSSC---BHHHHHHHHHHHHHTTTCCGGGCCCEEEEEECCCCTTCC-GGGC
T ss_pred HHHHHHcCCcccccceeEEecCCceeecccCce---EeecHHHHHHHHHHhhccccCCCCeEEEEEEEEecCCcc-cccC
Confidence 44899999999999999 33333333431111 1111000000000 000 123468999999999988665 3789
Q ss_pred hHHHHHHHHHhhhhhhc-CCCCCCC-ccccccc
Q psy3983 119 DITLRLFYLQVSRSAGS-RVRFPPG-PNCLLTP 149 (318)
Q Consensus 119 e~TRylf~LQlK~di~~-rl~C~~~-~a~lL~p 149 (318)
++|+||||+|++.||++ +++|+.+ +++.|++
T Consensus 367 ~it~~LlYlQ~k~dIl~Grlpc~~E~~a~~LAA 399 (655)
T 3pvl_A 367 NVATNLIYQQVVRGVKFGEYRCEKEDDLAELAS 399 (655)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCccCCChHHHHHHHHH
Confidence 99999999999999999 8999986 8998883
No 24
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=98.35 E-value=3.3e-07 Score=89.41 Aligned_cols=87 Identities=20% Similarity=0.280 Sum_probs=64.4
Q ss_pred ccceeEEe--e-cCCCCeEEEeecCCceeeeecCCcccccccccccc--CCCeeEEEEEeecCCCchHHHHHhHHHH-HH
Q psy3983 52 YGVNYFEI--K-NKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKK--ENPLQFKFRAKFYPEDVVEEIIQDITLR-LF 125 (318)
Q Consensus 52 yGv~YFgL--~-d~kg~~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~--~~p~~~~f~vkfyp~d~~~eL~qe~TRy-lf 125 (318)
-..+|||| . .+.+...||.++.+ +..|....-.+ ..++.+.|||+|||+|+...+.++.|++ +|
T Consensus 68 ~~~~~FgL~~~~~~~~~~~wL~~~~~----------l~~v~~k~~~~~~~~~~~~~fRvrF~p~d~~~l~~~D~~~~~yl 137 (392)
T 4eku_A 68 RLAECYGLRLKHMKSDEIHWLHPQMT----------VGEVQDKYECLHVEAEWRYDLQIRYLPEDFMESLKEDRTTLLYF 137 (392)
T ss_dssp CCGGGEEEEEEESSSCCEEEECTTSB----------HHHHHHHSTTTSCGGGEEEEEEECSCCTTTHHHHTTCHHHHHHH
T ss_pred CccceEEEEEEECCCCceEECCCCCc----------HHHHHhhhhhccCCCceEEEEEEEEEcCCHHHhhhcChHHHHHH
Confidence 46778888 3 34577899999885 11122111111 2468999999999999988777778886 78
Q ss_pred HHHhhhhhhc-C-CCCCCCcccccc
Q psy3983 126 YLQVSRSAGS-R-VRFPPGPNCLLT 148 (318)
Q Consensus 126 ~LQlK~di~~-r-l~C~~~~a~lL~ 148 (318)
|+|+|.|+++ . ..|+.+.|..|+
T Consensus 138 Y~Q~r~D~l~g~~~~~~~e~al~LA 162 (392)
T 4eku_A 138 YQQLRNDYMQRYASKVSEGMALQLG 162 (392)
T ss_dssp HHHHHHHHHHHTTTTSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 9999999999 4 578888888887
No 25
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Probab=98.23 E-value=1.7e-07 Score=81.56 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=42.0
Q ss_pred EeecCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983 105 AKFYPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP 149 (318)
Q Consensus 105 vkfyp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p 149 (318)
|||||+|+...+.++.||||||+|+|.|+++ +++|++++|+.|++
T Consensus 1 vkf~~~d~~~~~~d~~~~~l~y~Q~~~dil~g~~~~~~~~a~~Laa 46 (206)
T 1mix_A 1 MKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAG 46 (206)
T ss_dssp CCCCCCHHHHHTSCHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred CcccCCCCCCCcCCHHHHHHHHHHHHHHHHCCccccCHHHHHHHHH
Confidence 7999999987788889999999999999999 89999999999983
No 26
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=95.96 E-value=0.27 Score=39.44 Aligned_cols=89 Identities=12% Similarity=0.129 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEE 294 (318)
Q Consensus 215 vqqmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (318)
+|.||.++..-..+...-..++........++|.+...|..++.+++++..++...|..+......-+..+..++.+-+-
T Consensus 11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~ 90 (101)
T 3u1c_A 11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777776665555555556677777778888999999999999999999999999988877776666666666666666
Q ss_pred HHHHHHHHH
Q psy3983 295 LEARQTELQ 303 (318)
Q Consensus 295 ~~~~~~~~~ 303 (318)
|..+..-++
T Consensus 91 L~RriqllE 99 (101)
T 3u1c_A 91 LNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 666554443
No 27
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus}
Probab=95.92 E-value=0.0018 Score=57.35 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=28.5
Q ss_pred cCCCchHHHHHhHHHHHHHHHhhhhhhc-CCCCCCCccccccc
Q psy3983 108 YPEDVVEEIIQDITLRLFYLQVSRSAGS-RVRFPPGPNCLLTP 149 (318)
Q Consensus 108 yp~d~~~eL~qe~TRylf~LQlK~di~~-rl~C~~~~a~lL~p 149 (318)
||+||. +++|||+|+|.|+++ +++|++++|+.|++
T Consensus 22 ~~~Dp~-------~l~l~ylQ~~~dil~G~~~~~~e~a~~LAa 57 (222)
T 4f7g_A 22 SSRDPV-------QLNLLYVQARDDILNGSHPVSFDKACEFAG 57 (222)
T ss_dssp ----CC-------HHHHHHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred CCCCHH-------HHHHHHHHHHHHHhCCcccCCHHHHHHHHH
Confidence 578885 688999999999999 89999999999983
No 28
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=94.75 E-value=0.96 Score=35.95 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEE 294 (318)
Q Consensus 215 vqqmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (318)
.|.||.++..-..+...-..++........+++.+...+..++..++++...+...|..+......-+..+..++.+-+.
T Consensus 11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evas 90 (101)
T 3u59_A 11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666555545444445566666667778888888889999999998888888877776666655555556666666
Q ss_pred HHHHHHH
Q psy3983 295 LEARQTE 301 (318)
Q Consensus 295 ~~~~~~~ 301 (318)
|..+..-
T Consensus 91 LnRriql 97 (101)
T 3u59_A 91 LNRRIQL 97 (101)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=92.01 E-value=1.1 Score=48.87 Aligned_cols=42 Identities=24% Similarity=0.410 Sum_probs=19.0
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 275 (318)
.+|..+...-+..+.+..+++.++..+++++...++++.+..
T Consensus 963 ~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ 1004 (1080)
T 2dfs_A 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004 (1080)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334333333333444444445555555555555444444333
No 30
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=90.25 E-value=4.3 Score=30.92 Aligned_cols=61 Identities=20% Similarity=0.212 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275 (318)
Q Consensus 215 vqqmkaqa~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 275 (318)
+|+|+..+..-..+-..-..++.........++.+...|..++.+++++..++.+.|..++
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554444333333333444444444555555555555666666655555555554443
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=89.44 E-value=3.8 Score=40.23 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 259 QLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEEL 295 (318)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (318)
++++..+....++.+.++.+....++.+.++.+.+++
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 549 (597)
T 3oja_B 513 HLKERQAFKLRETQARRTEADAKQKETEDLEQENIAL 549 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHH
Confidence 3333333333333333333333333333333333333
No 32
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=88.07 E-value=6.1 Score=40.45 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=9.2
Q ss_pred HHHHHHHHHHhhchhhh
Q psy3983 296 EARQTELQLELQPIRNQ 312 (318)
Q Consensus 296 ~~~~~~~~~~~~~~~~~ 312 (318)
..+...++.+++.|+..
T Consensus 566 ~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34445556666666554
No 33
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.00 E-value=5.4 Score=48.41 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3983 254 VERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307 (318)
Q Consensus 254 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
.++|.+++.+...+++.|.+.++++.+++++++.++++-+...++...++.+++
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~ 2066 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESS 2066 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777777777777777777777777777776665555555544444443
No 34
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=85.89 E-value=7.1 Score=32.88 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
+.|+..+..+..|+.....+|...+..+..+..++..++++...|+.+...++.++
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444544444444454454444455444544444444433
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.97 E-value=30 Score=33.85 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3983 269 QDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP 308 (318)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (318)
+.+...++...+++.+.+..++...++.++.+.+.++++.
T Consensus 537 ~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~ 576 (597)
T 3oja_B 537 KETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQ 576 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444444443333
No 36
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=80.58 E-value=29 Score=30.39 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 236 LQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296 (318)
Q Consensus 236 l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
|..|+..|-.++....+++.|+..++.++......+..+...-+.|.+.+..++.++..++
T Consensus 78 L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 78 LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4455556666666667777777777777777777776666666666666666666665555
No 37
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=80.55 E-value=29 Score=30.39 Aligned_cols=62 Identities=19% Similarity=0.249 Sum_probs=38.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
.+..+..|++.+..++.....-..+.....+++.+|+.....++.+.+.+..+...+..++.
T Consensus 60 L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r 121 (168)
T 3o0z_A 60 LENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERK 121 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677777777777766666666666666666666666666666655555544444443
No 38
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=79.58 E-value=24 Score=28.87 Aligned_cols=12 Identities=33% Similarity=0.310 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHh
Q psy3983 238 LEIAAREKAEKK 249 (318)
Q Consensus 238 ~e~~~~~~~~~~ 249 (318)
.+...|...+..
T Consensus 31 k~e~~r~ele~~ 42 (129)
T 2fxo_A 31 KSEARRKELEEK 42 (129)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=79.18 E-value=27 Score=29.30 Aligned_cols=41 Identities=12% Similarity=0.250 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 248 KKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQL 288 (318)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (318)
++...|...|...+.+...+.+++.+.++.+..|+.+...+
T Consensus 89 kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 89 KEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444
No 40
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=79.10 E-value=23 Score=28.37 Aligned_cols=67 Identities=30% Similarity=0.330 Sum_probs=49.2
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQT 300 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (318)
+.|.-|+..++.--+.+.+++.-|..++.+...++.-+.+.+.++.....-+.-..-++-.|+++..
T Consensus 11 ~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~EklAkldLE~RLs 77 (101)
T 1d7m_A 11 NSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLA 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 4567777788888888889999999999998888888887777766655555555555555665553
No 41
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=78.58 E-value=25 Score=28.93 Aligned_cols=84 Identities=21% Similarity=0.206 Sum_probs=53.6
Q ss_pred cCCCcHHHHHHHHH---HHHHHHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 208 RKPDTIDVQQMKAQ---AREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQ 284 (318)
Q Consensus 208 r~~d~~~vqqmkaq---a~eek~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (318)
-+.+.+++.-++++ |.+-=+.|+.+..+|..|...+..+-....-|..+..-+......-..+-.+..+++.+|.++
T Consensus 19 ~~~~~~ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~q 98 (110)
T 2v4h_A 19 SHMASMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQ 98 (110)
T ss_dssp CCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHH
Confidence 34566666666554 444456778888888888877666555566666677766666655555555555666666666
Q ss_pred HHHHHHH
Q psy3983 285 LKQLQAA 291 (318)
Q Consensus 285 ~~~~~~~ 291 (318)
+..++..
T Consensus 99 l~~Lq~q 105 (110)
T 2v4h_A 99 LEQLQRE 105 (110)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555544
No 42
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.96 E-value=33 Score=29.57 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=44.1
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLEVEM--------AKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLE 305 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (318)
..|..|+..|..||.++..++..|..+-... ..+..+-...+.+...|+++++..+.--+.|.....++..-
T Consensus 65 ~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v 144 (154)
T 2ocy_A 65 EDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKV 144 (154)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888889888888877777666543221 12222233334455555555555555555555555555555
Q ss_pred hhchhhh
Q psy3983 306 LQPIRNQ 312 (318)
Q Consensus 306 ~~~~~~~ 312 (318)
++.+..+
T Consensus 145 ~~~m~~e 151 (154)
T 2ocy_A 145 MHSLDNE 151 (154)
T ss_dssp TSCCC--
T ss_pred HHHhhhc
Confidence 5544433
No 43
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=77.53 E-value=26 Score=28.21 Aligned_cols=74 Identities=18% Similarity=0.252 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 236 LQLEIAAREKAEKKHQESVERLKQLEVEM-----------AKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304 (318)
Q Consensus 236 l~~e~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
|...+++....++.+.+|+.++..++.+. .....+|......+..|...+...+.+...+.....+++.
T Consensus 17 L~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~ 96 (107)
T 2no2_A 17 VSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEK 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777776666644221 1122233333333334555555555555556555555555
Q ss_pred Hhhch
Q psy3983 305 ELQPI 309 (318)
Q Consensus 305 ~~~~~ 309 (318)
+...|
T Consensus 97 Ek~~L 101 (107)
T 2no2_A 97 ERDSL 101 (107)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 44
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=77.16 E-value=17 Score=44.40 Aligned_cols=58 Identities=9% Similarity=0.188 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (318)
..+++..|...+++.+..++.|.+.++.+..|.++...+..+++.|+.+....+..++
T Consensus 2016 l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~ 2073 (3245)
T 3vkg_A 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD 2073 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666666666666666665544444333
No 45
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=75.89 E-value=17 Score=28.36 Aligned_cols=53 Identities=19% Similarity=0.257 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy3983 257 LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPI 309 (318)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (318)
|.+++...+.+-+...-.+..+.+|.++...+..+.+++...+..+..+.+.+
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qL 60 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33444444444444333444444444444444444444444333344444433
No 46
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.43 E-value=11 Score=28.94 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 257 LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 257 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
+.++++..++..++|...++.|++|+.++....++-.+|....
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888888887777666666555443
No 47
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=74.20 E-value=30 Score=27.23 Aligned_cols=62 Identities=24% Similarity=0.338 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (318)
..++...|..++.+-...+.+|...+..+..|..+-.+--.+--.+.....+.+.++..|.+
T Consensus 20 E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~ 81 (96)
T 3q8t_A 20 EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVEN 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666665555555555555444444444444455555555554443
No 48
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=72.27 E-value=26 Score=28.41 Aligned_cols=50 Identities=24% Similarity=0.253 Sum_probs=34.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 248 KKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA 297 (318)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (318)
++.-+|+.++.+++++..+.+..-......+++|+.++.++..+-..|..
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 44556788888888888777665555566777777777777666666553
No 49
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=71.87 E-value=50 Score=33.71 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy3983 236 LQLEIAAREKAEKKHQESVERLKQLEVEM 264 (318)
Q Consensus 236 l~~e~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (318)
+..|+..++.||++.+.|+++.++++.-+
T Consensus 489 ~~~~~~~~e~~~~~~~~l~~~~~~~~~~~ 517 (592)
T 1f5n_A 489 IEVERVKAESAQASAKMLHEMQRKNEQMM 517 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555444444444444333
No 50
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=70.05 E-value=89 Score=33.66 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=9.5
Q ss_pred HHHHHHHHhhHhHHHHHH
Q psy3983 224 EEKNAKQQQRDKLQLEIA 241 (318)
Q Consensus 224 eek~~~~~er~~l~~e~~ 241 (318)
|..++-..||+++..+..
T Consensus 681 eQea~g~Lerqki~d~a~ 698 (861)
T 2zuo_A 681 EQEARGRLERQKILDQSE 698 (861)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHH
Confidence 444555556666555443
No 51
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=70.04 E-value=77 Score=30.17 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=38.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (318)
.++...++++-+.+++.+...++...+-.+ ..|+.+..|.+..-++||.+.+++..+++.++.
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALM---ASLDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666655555555444333 346666677677777888888777777766554
No 52
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=70.02 E-value=36 Score=26.28 Aligned_cols=50 Identities=14% Similarity=0.105 Sum_probs=23.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEEL 295 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (318)
.+....+++....++..+.......+.+++++..+|..+...++..-..|
T Consensus 33 ~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 33 TERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555544443335555555555444444433333333
No 53
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=68.27 E-value=16 Score=30.01 Aligned_cols=34 Identities=35% Similarity=0.357 Sum_probs=28.3
Q ss_pred HhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy3983 231 QQRDKLQLEIAAREKAEKKHQESVERLKQLEVEM 264 (318)
Q Consensus 231 ~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~ 264 (318)
+-+.-...||.+|+++..++++|..+|..++.+.
T Consensus 73 IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~ 106 (110)
T 2v4h_A 73 IYKADFQAERHAREKLVEKKEYLQEQLEQLQREF 106 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 4566677889999999999999999999887654
No 54
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=64.52 E-value=43 Score=25.21 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAK 292 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (318)
...++..|+..+....++..++...+..+..|++++..+++..
T Consensus 22 ~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l 64 (81)
T 1ic2_A 22 AEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444555455555555555554444443
No 55
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=64.04 E-value=51 Score=25.85 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhhHhHHH
Q psy3983 218 MKAQAREEKNAKQQQRDKLQL 238 (318)
Q Consensus 218 mkaqa~eek~~~~~er~~l~~ 238 (318)
-+..|+|+..-++.++++|..
T Consensus 24 KrEaA~Ee~YfrqkekEqL~~ 44 (84)
T 1gmj_A 24 KREQAEEERYFRARAKEQLAA 44 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHhHHHHHHHHHHHHHHH
Confidence 466788888888888888754
No 56
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=63.28 E-value=68 Score=27.09 Aligned_cols=58 Identities=22% Similarity=0.344 Sum_probs=35.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 241 AAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEAR 298 (318)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
...+.+++...+..++|..++.+..++...+..+..++..|+++++.+-.--..|+..
T Consensus 66 ~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ 123 (147)
T 2b9c_A 66 HIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDK 123 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3344455556666666666666666666666666666666666666655555555543
No 57
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=62.99 E-value=50 Score=25.48 Aligned_cols=60 Identities=28% Similarity=0.488 Sum_probs=36.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983 243 REKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
++...+...|| .-|++.++|...-.+-| .+++.+|+.+...++...+-|..+..|++..+
T Consensus 17 ~E~~~q~qaEl-~sLrrT~~EL~~G~~KL---~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 17 KEEMDRAQAEL-NALKRTEEDLKKGHQKL---EEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhHHH-HHHHHHHHHHHhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444 34556666665555554 36677777777777777777777777666543
No 58
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=62.94 E-value=24 Score=26.96 Aligned_cols=51 Identities=20% Similarity=0.173 Sum_probs=37.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 246 AEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296 (318)
Q Consensus 246 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
.+....+||.++...++-....++.+-+++..|.+|..+++.+.+....++
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345577788888888888888888888888888888888877765544444
No 59
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=62.74 E-value=48 Score=25.18 Aligned_cols=63 Identities=27% Similarity=0.223 Sum_probs=30.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPI 309 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (318)
..+.++++.+=..+++..+..++.|..++..-..+..+++.+.+--.----...++.+.+.+|
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL 68 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 334444444445555555555556655555555555555554443332223334444444443
No 60
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=62.40 E-value=71 Score=26.98 Aligned_cols=83 Identities=23% Similarity=0.267 Sum_probs=57.7
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 226 KNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLE 305 (318)
Q Consensus 226 k~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (318)
++.-..+|..-..|..... .+.....|+.+|+....-+..++....++...+..++..+.++.+.++..+.+..+++.+
T Consensus 31 k~adE~eR~~k~lE~r~~~-deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEee 109 (147)
T 2b9c_A 31 KAADESERGMKVIESRAQK-DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEE 109 (147)
T ss_dssp HHHHHHTHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcc-cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433332 233455677777777777777777777888888889999999999999999999999888
Q ss_pred hhch
Q psy3983 306 LQPI 309 (318)
Q Consensus 306 ~~~~ 309 (318)
+.-+
T Consensus 110 L~~~ 113 (147)
T 2b9c_A 110 LKTV 113 (147)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 61
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=61.54 E-value=54 Score=25.32 Aligned_cols=67 Identities=19% Similarity=0.196 Sum_probs=34.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 244 EKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
+.+..+.++++.+=..+++..+..+..|..++..-..+..+++.+.+--.----...++.+.+.+|-
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL~ 75 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARLA 75 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 3344445555555555555555556666666655555555555554433333333355555555543
No 62
>4dx8_A Integrin beta-1-binding protein 1; protein-protien complex, PTB domain, nudix fold, protein-Pro interaction, membrane, nucleus, protein binding; 2.54A {Homo sapiens} PDB: 4dx9_A
Probab=59.16 E-value=27 Score=30.22 Aligned_cols=41 Identities=17% Similarity=0.342 Sum_probs=31.7
Q ss_pred HHHHHHHHHhccCcccceeEEeecCCCCeEEEeecCCceeeeecCCc
Q psy3983 38 AMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDN 84 (318)
Q Consensus 38 Ae~efLkvaq~Le~yGv~YFgL~d~kg~~~WLgl~k~Gi~Iy~~~dk 84 (318)
-.++||+.+|+.+-+..+. .....-+.+++-||.|-..+..
T Consensus 41 ell~~ID~aQq~gkLP~~~------~~Edvi~svSkyGvkl~~~d~~ 81 (154)
T 4dx8_A 41 DLINYIDVAQQDGKLPFVP------PEEEFIMGVSKYGIKVSTSDQY 81 (154)
T ss_dssp HHHHHHHHHHHTTSSCSSC------CSCCEEEEEETTEEEEEETTSC
T ss_pred HHHHHHHHHHHhCcCCCCC------CcCeEEEEEeccCcEEEeccCc
Confidence 4578999999988777665 2336889999999999876554
No 63
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=57.86 E-value=46 Score=26.13 Aligned_cols=49 Identities=24% Similarity=0.374 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
..+...|..++.+-....++|...+..-..+..++..++++.+.|...-
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE 55 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEE 55 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHH
Confidence 4456666667666666666666666666666666666666666665443
No 64
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=57.07 E-value=6.8 Score=30.44 Aligned_cols=25 Identities=32% Similarity=0.622 Sum_probs=22.0
Q ss_pred HHHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 25 TWWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 25 ~~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
.-|++..|||.++|+-.|++++.+|
T Consensus 59 ~AW~~l~gms~eeA~~~YI~~v~~l 83 (89)
T 1hbk_A 59 EAWKSVENLNREDAQKRYVDIVSEI 83 (89)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3577889999999999999998875
No 65
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=55.54 E-value=74 Score=25.02 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhc
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQ-------LQAAKEELEARQTELQLELQP 308 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 308 (318)
...++..++..++...+..+++...+.++..++.++.. +....+.-+...++++.++..
T Consensus 25 ae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~ 90 (101)
T 3u1c_A 25 AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVAS 90 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555544444443 333333334444545444443
No 66
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=55.40 E-value=93 Score=26.80 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=23.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296 (318)
Q Consensus 247 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
+.+...++.++.+++++++.....+...+....-|.-++..++.....|+
T Consensus 74 ~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 74 QKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666655554444444444444444444333333333333
No 67
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=54.53 E-value=1.6e+02 Score=29.72 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=47.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhHh----HHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 212 TIDVQQMKAQAREEKNAKQQQRDK----LQLEIAA-REKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLK 286 (318)
Q Consensus 212 ~~~vqqmkaqa~eek~~~~~er~~----l~~e~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (318)
.-.||.--|+|+++=..+..+-+. +..|..+ +++.+..+...+..|.+.+.+..+-+.++.+.+.....-+.++.
T Consensus 18 larvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~~kl~aYe~~~~ 97 (497)
T 3iox_A 18 LARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYPVKLKAYEDEQT 97 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655455444443 3333322 22333446667777777777777777776666655555555554
Q ss_pred HHHHHHHHHH
Q psy3983 287 QLQAAKEELE 296 (318)
Q Consensus 287 ~~~~~~~~~~ 296 (318)
..+.+.++++
T Consensus 98 ~~~k~lae~e 107 (497)
T 3iox_A 98 SIKAALAELE 107 (497)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 4444444443
No 68
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=53.54 E-value=77 Score=24.67 Aligned_cols=46 Identities=26% Similarity=0.308 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEEL 295 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (318)
++-+.+.|.+...........|.+++.....|..+++.++++.++|
T Consensus 26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 26 RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666677777777777777776666666554
No 69
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=53.06 E-value=8 Score=30.01 Aligned_cols=25 Identities=40% Similarity=0.724 Sum_probs=21.8
Q ss_pred HHHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 25 TWWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 25 ~~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
.-|+++.|||.++|.-.|++++.+|
T Consensus 57 ~AW~~l~gms~eeA~~~Yi~~v~~l 81 (87)
T 2cb8_A 57 DAWNELKGTSKEDAMKAYINKVEEL 81 (87)
T ss_dssp HHHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4577889999999999999988775
No 70
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.84 E-value=19 Score=30.50 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy3983 234 DKLQLEIAAREKAEKKHQESVERLKQLE 261 (318)
Q Consensus 234 ~~l~~e~~~~~~~~~~~~~~~~~l~~~~ 261 (318)
..|..|+..|..||.++..++..|..+-
T Consensus 53 ~~l~eE~~~R~~aE~~~~~ie~ElE~LT 80 (135)
T 2e7s_A 53 EDIAKENELRTKAEEEADKLNKEVEDLT 80 (135)
T ss_dssp HHHHHTTSHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677788888888777766665543
No 71
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=50.52 E-value=6.8 Score=30.23 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=21.7
Q ss_pred HHHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 25 TWWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 25 ~~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
.-|++..|||.++|+-.|++++.+|
T Consensus 56 ~AW~~l~gms~eeA~~~YI~~v~~l 80 (86)
T 1st7_A 56 EAWENLKGKSQEDAEKEYIALVDQL 80 (86)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4577789999999999999988765
No 72
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=50.31 E-value=10 Score=30.22 Aligned_cols=25 Identities=32% Similarity=0.575 Sum_probs=21.9
Q ss_pred HHHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 25 TWWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 25 ~~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
.-|++..|||.++|.-.|++++.+|
T Consensus 66 ~AW~~l~gmS~eeAm~~YI~lv~~l 90 (96)
T 2lbb_A 66 EAWNALRGMSTESAKEAYVKLLDTL 90 (96)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4577889999999999999988875
No 73
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=50.13 E-value=97 Score=24.80 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=20.6
Q ss_pred hhHhHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy3983 232 QRDKLQLEIAAREKAEKKHQESVERLKQLE 261 (318)
Q Consensus 232 er~~l~~e~~~~~~~~~~~~~~~~~l~~~~ 261 (318)
=...|..|+..|..||.++..++..|..+-
T Consensus 31 L~~~l~eE~~~R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 31 LREDIAKENELRTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677778888888877777766665543
No 74
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=49.92 E-value=55 Score=31.68 Aligned_cols=48 Identities=15% Similarity=0.257 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEAR 298 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
.+++.++..++++....++.+..++....++.+++...+.....|-..
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~ 53 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNE 53 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666666666666655555544444433
No 75
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=49.77 E-value=9.6 Score=29.74 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.4
Q ss_pred HHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 26 WWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 26 ~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
-|+++.|||.++|.-.|++++.+|
T Consensus 60 AW~~l~g~s~eeA~~~Yi~~v~~l 83 (89)
T 3epy_A 60 AWNLKKGLSTEDATSAYISKAKEL 83 (89)
T ss_dssp HHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHH
Confidence 567799999999999999998875
No 76
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=49.49 E-value=13 Score=29.77 Aligned_cols=49 Identities=31% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 226 KNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274 (318)
Q Consensus 226 k~~~~~er~~l~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 274 (318)
++.-.+=+.-...||.+|+++..++++|..+|..++.+..+.+.+-.++
T Consensus 46 k~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~q~~~L~~~~~~~ 94 (94)
T 3jsv_C 46 KAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNKLKVGCHES 94 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccC
No 77
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=49.41 E-value=1.3e+02 Score=25.95 Aligned_cols=20 Identities=20% Similarity=0.287 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3983 277 MIRRLEEQLKQLQAAKEELE 296 (318)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~ 296 (318)
....++++++.+++|-..|-
T Consensus 111 q~n~lE~kl~kLq~EN~~LV 130 (152)
T 3a7p_A 111 ENNVLQQKLSDLKKEHSQLV 130 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555444433
No 78
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.39 E-value=1.8e+02 Score=27.76 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy3983 256 RLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPI 309 (318)
Q Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (318)
-..++|.+..+..++....++.+..|.++...++.+..++.....++.+.++.+
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 344555555566666667777778888877777777777777777776666554
No 79
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=47.92 E-value=69 Score=23.99 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=17.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy3983 241 AAREKAEKKHQESVERLKQLEVEMAKR 267 (318)
Q Consensus 241 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ 267 (318)
.-|+.-+....+|+.++..++......
T Consensus 22 afReRK~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 22 AFRKRKEDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777887777777655543
No 80
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=46.30 E-value=2e+02 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.171 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983 276 EMIRRLEEQLKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
.......++.+++.++.++++....++...+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3333334444444445555554444444433
No 81
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=45.95 E-value=99 Score=23.70 Aligned_cols=20 Identities=40% Similarity=0.449 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy3983 286 KQLQAAKEELEARQTELQLE 305 (318)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~ 305 (318)
..+++..+.|.+...+++..
T Consensus 59 ~eaEe~~~~L~~~K~eLE~~ 78 (89)
T 3bas_A 59 KQLEDKVEELLSKNYHLENE 78 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444333
No 82
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.78 E-value=11 Score=30.50 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.6
Q ss_pred HHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 26 WWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 26 ~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
-|+.+.||+.++|+-.|++++.+|
T Consensus 64 AW~~l~gms~eeAm~~YI~lv~~l 87 (109)
T 2cop_A 64 AWKALGDSSPSQAMQEYIAVVKKL 87 (109)
T ss_dssp HHHSCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 477889999999999999998875
No 83
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=45.43 E-value=1e+02 Score=23.84 Aligned_cols=54 Identities=19% Similarity=0.249 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 252 ESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLE 305 (318)
Q Consensus 252 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (318)
.|+.++.++=+...-.+-++.+..+.-..|.++...+....+.|......+.++
T Consensus 10 qLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E 63 (81)
T 2jee_A 10 KLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344555555554444444444444555555555555444444444444444433
No 84
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=45.27 E-value=1.5e+02 Score=25.45 Aligned_cols=50 Identities=26% Similarity=0.305 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy3983 260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPI 309 (318)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (318)
++....++.+.-...++.|..|..+++.++..++.-+.....++..+.++
T Consensus 61 LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~l 110 (155)
T 2efr_A 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344333344556666666666666655555555555555555544
No 85
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=44.50 E-value=13 Score=30.07 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.1
Q ss_pred HHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 26 WWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 26 ~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
-|+.+.|||..+|.-.|++++.+|
T Consensus 68 AW~~l~gms~eeA~~~YI~~v~~l 91 (106)
T 2wh5_A 68 AWNSLGKMSREEAMSAYITEMKLV 91 (106)
T ss_dssp HHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHH
Confidence 477889999999999999988764
No 86
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=44.36 E-value=59 Score=31.43 Aligned_cols=51 Identities=24% Similarity=0.257 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3983 258 KQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP 308 (318)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (318)
.+++++.+..++...+.++.+..++.+++.+.+....-+..+..+..+++.
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~e 56 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQE 56 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555554444444444444444443
No 87
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=43.73 E-value=60 Score=24.59 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3983 269 QDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP 308 (318)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (318)
.-|..|.+-|..|.++...++++.+.|..+..++...++.
T Consensus 40 ~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 40 SLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567788888999999999999999998888888777654
No 88
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=43.65 E-value=48 Score=25.51 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh
Q psy3983 269 QDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311 (318)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (318)
.-|..+.+-|..|..+...+..+.+.|..+...+...++.|+.
T Consensus 45 ~iL~~A~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 45 VILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3467788889999999999999999999999999988887764
No 89
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=43.49 E-value=53 Score=24.59 Aligned_cols=41 Identities=17% Similarity=0.246 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 270 DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
-|..+-+-|..|..+...++.+.+.|..+...++..++.+.
T Consensus 41 iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 41 ILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46677788888999999999999999888888888877664
No 90
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=42.94 E-value=96 Score=30.17 Aligned_cols=49 Identities=16% Similarity=0.113 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEAR 298 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (318)
+..|+..|..+++.....++.....+.....+.+++.+.+.+...|-..
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~ 53 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNT 53 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555544444444433
No 91
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=41.49 E-value=1.1e+02 Score=23.13 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 277 MIRRLEEQLKQLQAAKEELEARQTE 301 (318)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (318)
.+..|..++..++.+.+.+..+=.+
T Consensus 57 ~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 57 QTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 92
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=40.42 E-value=5.9 Score=38.98 Aligned_cols=53 Identities=25% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 251 QESVERLKQLEVEMAKRDQDLME-AQEMIRRLEEQLKQLQAAKEELEARQTELQ 303 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (318)
.+-+.+|++.|.++....+.+.. .++....|+++.++++++...++++...++
T Consensus 351 ~~~e~~l~~~e~~l~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~ 404 (427)
T 2qag_B 351 KEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAE 404 (427)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544333333321 234455666666666666666666654443
No 93
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.16 E-value=16 Score=30.01 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=21.8
Q ss_pred HHHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 25 TWWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 25 ~~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
.-|+.+.||+.++|.-.|++++.+|
T Consensus 71 ~AW~~l~gms~eeAm~~YI~lv~~l 95 (116)
T 2cqu_A 71 DAWNALGSLPKEAARQNYVDLVSSL 95 (116)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3467789999999999999998875
No 94
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=39.87 E-value=1.5e+02 Score=24.11 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 260 LEVEMAKRDQDLMEAQEMIRRLEE 283 (318)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~ 283 (318)
++.+.......-......++.||.
T Consensus 40 Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 40 LEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 95
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=39.54 E-value=18 Score=29.93 Aligned_cols=24 Identities=25% Similarity=0.576 Sum_probs=21.4
Q ss_pred HHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 26 WWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 26 ~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
-|++..|||+.+|.-.|++++.+|
T Consensus 84 AW~~l~gmS~eeAm~~YI~~v~~l 107 (119)
T 3flv_A 84 AWSSLGDMTKEEAMIAYVEEMKKI 107 (119)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHH
Confidence 677899999999999999988764
No 96
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=39.49 E-value=2e+02 Score=25.40 Aligned_cols=63 Identities=21% Similarity=0.279 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 248 KKHQESVERLKQLEVEMAKRDQDLMEAQE----MIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
+...+|..++.++..+.......+..+.. .+..|..++..+......|.....++++...-++
T Consensus 56 k~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlE 122 (189)
T 2v71_A 56 QRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLE 122 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33444444444444444444333333333 3777777777777777777777777777655544
No 97
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=39.43 E-value=1.3e+02 Score=23.32 Aligned_cols=38 Identities=13% Similarity=0.212 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQ 287 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (318)
-..++..++..++...+...++...+..+..|+.++..
T Consensus 25 ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~ 62 (101)
T 3u59_A 25 AEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEK 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555544444444444444444433
No 98
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=38.40 E-value=18 Score=29.20 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=21.4
Q ss_pred HHHHHccCCCHHHHHHHHHHHHhcc
Q psy3983 25 TWWKEHKGMLREDAMMEYLKIAQDL 49 (318)
Q Consensus 25 ~~hk~~kG~~~~eAe~efLkvaq~L 49 (318)
.-|+...|||..+|.-.|++++.+|
T Consensus 63 ~AW~~l~gmS~eeA~~~YI~~v~~l 87 (106)
T 3fp5_A 63 DAWKSVEGTSKEVAYQKYVEKLLEI 87 (106)
T ss_dssp HHHHTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3577889999999999999988764
No 99
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=38.12 E-value=1.6e+02 Score=23.85 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 265 AKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
++....|..+++.|.+--+++++++...++|..+.--++.|..+|+
T Consensus 58 Qqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~k 103 (114)
T 2xzr_A 58 QQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIK 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344455566677777777788888888888888877777777765
No 100
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=38.11 E-value=1.1e+02 Score=21.76 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQ 287 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (318)
..++..++..+.....+.-+.|.++...+..|.+++..
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~ 48 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666666666666666666666666665544
No 101
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.22 E-value=1.6e+02 Score=23.55 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA 297 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (318)
++.++...+.+..+...+|.+....-...+.++.+++.+-+.|.+
T Consensus 17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444334444444444444444443
No 102
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=35.72 E-value=1.4e+02 Score=22.57 Aligned_cols=56 Identities=20% Similarity=0.210 Sum_probs=31.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 244 EKAEKKHQESVERLKQLEVEMAKR------DQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299 (318)
Q Consensus 244 ~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (318)
+..+.....++.++..++.++... -..+.........++.++..+.+.=++|+..+
T Consensus 25 e~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~~ 86 (89)
T 2lw1_A 25 EQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEALK 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344555666666666666666431 13344555566666666666666666666543
No 103
>1ntv_A Disabled homolog 1; beta-sandwich, signaling protein; 1.50A {Mus musculus} SCOP: b.55.1.2 PDB: 1nu2_A* 1oqn_A*
Probab=34.96 E-value=1.7e+02 Score=24.07 Aligned_cols=23 Identities=13% Similarity=0.478 Sum_probs=17.6
Q ss_pred CCCCeEEEeecCCceeeeecCCc
Q psy3983 62 KKGTELWLGVDALGLNIYEKEDN 84 (318)
Q Consensus 62 ~kg~~~WLgl~k~Gi~Iy~~~dk 84 (318)
.+...++|.++..||.|.....+
T Consensus 58 ~~~~~v~L~IS~~GI~v~d~~tk 80 (152)
T 1ntv_A 58 EHKQKIFLTISFGGIKIFDEKTG 80 (152)
T ss_dssp CCCEEEEEEEETTEEEEEETTTC
T ss_pred CCCCEEEEEEECCeEEEEECCCC
Confidence 34568999999999999875443
No 104
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=34.89 E-value=4.6e+02 Score=28.26 Aligned_cols=13 Identities=8% Similarity=0.416 Sum_probs=6.8
Q ss_pred cccccceEEEEeC
Q psy3983 161 ISFNDRKFIIKPI 173 (318)
Q Consensus 161 lsf~~kkF~Ikp~ 173 (318)
+.|..+.+.|...
T Consensus 626 ~~F~~N~lvitsV 638 (861)
T 2zuo_A 626 AVFPQNGLVVSSV 638 (861)
T ss_dssp EECTTTCEEEEEE
T ss_pred eEEccCCeEEEEE
Confidence 4555555555543
No 105
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=33.98 E-value=1.7e+02 Score=23.28 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQ 289 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (318)
+.+|+..++..+.....++....+.+..+.+.++++.
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444444443
No 106
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=33.52 E-value=55 Score=27.24 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=21.3
Q ss_pred eEEEeecCCceeeeecCCccccccccccccCCCeeEEEEEeecCCC
Q psy3983 66 ELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPED 111 (318)
Q Consensus 66 ~~WLgl~k~Gi~Iy~~~dk~~~v~~q~i~~~~p~~~~f~vkfyp~d 111 (318)
..||+.+. ++.+|+|.-.. ++.+|-|||=+|
T Consensus 97 ~~WLD~sr-------------tL~EQGI~e~~--tllLRrKfffsd 127 (128)
T 2kc2_A 97 LNWLDHGR-------------TLREQGVEEHE--TLLLRRKFFYSD 127 (128)
T ss_dssp EEEECSSS-------------CHHHHTCCTTS--EEEEEESSCCCC
T ss_pred CCcccCCC-------------cHHHcCCCCCC--EEEEEEEEeccC
Confidence 47887665 57888877444 367777887665
No 107
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=33.42 E-value=1.5e+02 Score=22.42 Aligned_cols=48 Identities=25% Similarity=0.258 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLE 305 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (318)
.+++.|+..+|...+-.+..+ ..|...+.+.+.+-..|..+...+...
T Consensus 10 ~~le~Ri~~LE~klAfqE~tI-------eeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQAL-------TELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357777777776655554444 444444444444444444444443333
No 108
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=32.96 E-value=2.3e+02 Score=24.20 Aligned_cols=85 Identities=19% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHhHHH--HHHHHHHHHHhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 223 REEKNAKQQQRDKLQL--EIAAREKAEKKHQESVERLKQLEVEM------------AKRDQDLMEAQEMIRRLEEQLKQL 288 (318)
Q Consensus 223 ~eek~~~~~er~~l~~--e~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 288 (318)
.+-+..-+..++.... -.......+.++..++....-.+... .....+|....+....++.++..+
T Consensus 13 ~e~~~~l~~~~~~~~~~~~~a~~~~le~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~la~l 92 (146)
T 2xnx_M 13 EEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQL 92 (146)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy3983 289 QAAKEELEARQTELQLELQ 307 (318)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~ 307 (318)
.++...|++....++++.+
T Consensus 93 ~~~~~~LeAE~aKLeEekQ 111 (146)
T 2xnx_M 93 SSEKEQLTIEKAKLEEEKQ 111 (146)
T ss_dssp HHHHHHHHHHHHHHGGGTT
T ss_pred HhhHHHHHHHHHHHHHHHH
No 109
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.18 E-value=1.2e+02 Score=21.47 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 276 EMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
+.+..|+.+...++.+-..|......+..++..|+
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555443
No 110
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=30.17 E-value=11 Score=36.69 Aligned_cols=57 Identities=30% Similarity=0.447 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 248 KKHQESVERLKQLEVEMAKRDQDLME-AQEMIRRLEEQLKQLQAAKEELEARQTELQL 304 (318)
Q Consensus 248 ~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
....+-+.+|++.|.+.....+++.. .++....|+++.++++++....+++...+..
T Consensus 344 ~~v~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 401 (418)
T 2qag_C 344 MKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQ 401 (418)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 33344445566666555444333322 2344456666666666666666655544433
No 111
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=27.46 E-value=1.7e+02 Score=21.05 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLE 261 (318)
Q Consensus 250 ~~~~~~~l~~~~ 261 (318)
..+|+.+...++
T Consensus 25 ~~~le~~~~~L~ 36 (63)
T 1ci6_A 25 QEALTGECKELE 36 (63)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 112
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=27.33 E-value=1.7e+02 Score=20.88 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=4.5
Q ss_pred HHHHhhHhHH
Q psy3983 228 AKQQQRDKLQ 237 (318)
Q Consensus 228 ~~~~er~~l~ 237 (318)
++-.+|++..
T Consensus 4 ~rrrerNR~A 13 (63)
T 2wt7_A 4 RIRRERNKMA 13 (63)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhHHH
Confidence 3444555443
No 113
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=26.35 E-value=2.3e+02 Score=22.01 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLK 286 (318)
Q Consensus 253 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (318)
|.-|+..++.|--+-...|....+.+..|..++.
T Consensus 31 Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe 64 (81)
T 3qh9_A 31 LKIKVEELENERNQYEWKLKATKAEVAQLQEQVA 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444433333333333333333333333
No 114
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=25.87 E-value=3.1e+02 Score=23.38 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLK 286 (318)
Q Consensus 251 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (318)
..++.+++.+.+..+.+..-...++..+..|+..+.
T Consensus 73 d~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id 108 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID 108 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443333333333333333333
No 115
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2
Probab=25.79 E-value=2.9e+02 Score=23.04 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=35.1
Q ss_pred cCccCccccccccccceEEEEeCCCC---CCceEEEcCCccchHHHHHHhhhcc
Q psy3983 151 IGFPWSEIRNISFNDRKFIIKPIDKK---APDFVFFAPRVRVNKRILALCMGNH 201 (318)
Q Consensus 151 ~~f~W~~I~~lsf~~kkF~Ikp~dkk---~~~~~F~~~~~~~~K~iw~lcv~~H 201 (318)
...|+..+++-.+.++.|..+..-.- .-.|.|.|.....--.+++..+.++
T Consensus 48 ~~Wp~~~LRrYG~d~~~FsFEaGRRC~tGeGiF~F~t~~~~~If~~l~~~i~~~ 101 (129)
T 1xr0_B 48 VKWHYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCARAEELFNMLQEIMQNN 101 (129)
T ss_dssp EEECSTTEEEEEECSSEEEEEECSCSTTCSEEEEEECSCHHHHHHHHHHHHHHT
T ss_pred eEcchHHhhhcCccCCEEEEEcCCCCCCCCcEEEEEcCCHHHHHHHHHHHHhcc
Confidence 35677799999999999999974321 2369999998655444444444443
No 116
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=25.56 E-value=3.5e+02 Score=23.93 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q psy3983 256 RLKQLEVEMAKR 267 (318)
Q Consensus 256 ~l~~~~~~~~~~ 267 (318)
+...++++....
T Consensus 105 ~i~~lE~eile~ 116 (256)
T 3na7_A 105 RSNQANREIENL 116 (256)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 117
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=25.51 E-value=89 Score=28.91 Aligned_cols=38 Identities=21% Similarity=0.285 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQ 287 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (318)
..++..++.++.....+..++|.++..++..|.+++++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555444444444444444444444444443
No 118
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=25.13 E-value=3.1e+02 Score=27.40 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy3983 287 QLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~ 306 (318)
.+.++...|++...+++.++
T Consensus 82 ~l~~~i~~le~~~~~~~~~~ 101 (485)
T 3qne_A 82 KLSNEKKEIIEKEAEADKNL 101 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 119
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=24.61 E-value=1.8e+02 Score=23.91 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQ 284 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (318)
.++-.+|++.++.|.+.+.++|.++-+.+..|.++
T Consensus 87 ee~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~ 121 (132)
T 1ykh_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRH 121 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455677777777777776665554444444333
No 120
>2dlw_A Docking protein 2, isoform A; IRS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.05 E-value=2.4e+02 Score=22.82 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=28.6
Q ss_pred cCccCccccccccccceEEEEeCCCC---CCceEEEcCCcc
Q psy3983 151 IGFPWSEIRNISFNDRKFIIKPIDKK---APDFVFFAPRVR 188 (318)
Q Consensus 151 ~~f~W~~I~~lsf~~kkF~Ikp~dkk---~~~~~F~~~~~~ 188 (318)
...|+.-|++-.+.+..|.++..-.- .-.|.|.|.+..
T Consensus 52 ~~Wpl~~LRryG~d~~~FsfEaGRrC~tGeG~f~F~t~~~~ 92 (113)
T 2dlw_A 52 YDWPYRFLRRFGRDKVTFSFEAGRRCVSGEGNFEFETRQGN 92 (113)
T ss_dssp SCCBGGGCCCEEEETTEEEEEECSSCSSCSEEEEECCSTHH
T ss_pred EEEEhHHhhhcCccCCEEEEEecCCCCCCCCEEEEEcCCHH
Confidence 46677799999999999999984321 236899988754
No 121
>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}
Probab=24.01 E-value=1.4e+02 Score=23.55 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=17.8
Q ss_pred CCCCeEEEeecCCceeeeecCCc
Q psy3983 62 KKGTELWLGVDALGLNIYEKEDN 84 (318)
Q Consensus 62 ~kg~~~WLgl~k~Gi~Iy~~~dk 84 (318)
.+....+|.++..||.+.....+
T Consensus 41 ~~~~~v~L~Vs~~gi~l~d~~~~ 63 (137)
T 3so6_A 41 KKLQKVTLKVSPRGIILTDSLTS 63 (137)
T ss_dssp SCCEEEEEEEETTEEEEEETTTC
T ss_pred CCCCEEEEEEeCCeEEEEECCCC
Confidence 35678999999999999875443
No 122
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.92 E-value=1.6e+02 Score=20.27 Aligned_cols=23 Identities=17% Similarity=0.430 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 269 QDLMEAQEMIRRLEEQLKQLQAA 291 (318)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~ 291 (318)
.+....++.|.+|..+++.++++
T Consensus 16 rEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 16 REITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334444444444444433
No 123
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.76 E-value=3.4e+02 Score=24.44 Aligned_cols=73 Identities=7% Similarity=0.090 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q psy3983 240 IAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQE----------MIRRLEEQLKQLQAAKEELEARQTELQLELQPI 309 (318)
Q Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (318)
...-..++.+...+..+|.+.+.+...+..++.+.+. .....+.++..++.+.+.+++....++.++...
T Consensus 69 ~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a 148 (369)
T 4dk0_A 69 INTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEVNTA 148 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhh
Q psy3983 310 RNQ 312 (318)
Q Consensus 310 ~~~ 312 (318)
+.+
T Consensus 149 ~~~ 151 (369)
T 4dk0_A 149 ETN 151 (369)
T ss_dssp HHT
T ss_pred HHH
No 124
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.59 E-value=1.8e+02 Score=24.53 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEE 283 (318)
Q Consensus 250 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (318)
.++-.+|++.+++|.+.+.++|.++-+.+..|.+
T Consensus 87 eeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~ 120 (151)
T 1yke_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLR 120 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445567777777777777666555444444433
No 125
>1j0w_A Downstream of tyrosine kinase 5; beta strands, ALFA helix, transferase; 2.50A {Homo sapiens} SCOP: b.55.1.2
Probab=23.30 E-value=2.1e+02 Score=22.66 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=29.3
Q ss_pred cCccCccccccccccceEEEEeCCC---CCCceEEEcCCcc
Q psy3983 151 IGFPWSEIRNISFNDRKFIIKPIDK---KAPDFVFFAPRVR 188 (318)
Q Consensus 151 ~~f~W~~I~~lsf~~kkF~Ikp~dk---k~~~~~F~~~~~~ 188 (318)
...|++.|++-.+.+..|.++..-. ..-.|.|.|++..
T Consensus 45 ~~Wp~~~LRRyG~~~~~FsFEaGRrC~tG~G~f~F~~~~~~ 85 (103)
T 1j0w_A 45 ISWPLSALRRYGRDTTWFTFEAGRMCETGEGLFIFQTRDGE 85 (103)
T ss_dssp EEEEGGGEEEEEECSSEEEEEECSSSSSCSEEEEEECSCHH
T ss_pred EEeeHHHHhhcCccCCEEEEEeCCCCCCCCcEEEEEcCCHH
Confidence 4567779999999999999997432 1236999999864
No 126
>2kup_A Fibroblast growth factor receptor substrate 3; complex, SNT-2, PTB domain, HALK, structural genomics, signa protein, NPPSFA; NMR {Homo sapiens} PDB: 2ys5_A
Probab=23.26 E-value=3.5e+02 Score=23.02 Aligned_cols=52 Identities=15% Similarity=0.232 Sum_probs=36.5
Q ss_pred CccCccccccccccceEEEEeCCCC---CCceEEEcCCccchHHHHHHhhhcccc
Q psy3983 152 GFPWSEIRNISFNDRKFIIKPIDKK---APDFVFFAPRVRVNKRILALCMGNHEL 203 (318)
Q Consensus 152 ~f~W~~I~~lsf~~kkF~Ikp~dkk---~~~~~F~~~~~~~~K~iw~lcv~~H~F 203 (318)
..|+..|++-.+.+..|.++..-.- .-.|.|.|.....--.+++..|.++..
T Consensus 56 ~WPy~~LRRYG~d~~~FsFEaGRrC~tGeGiF~F~t~~~e~If~~l~~~iq~~~~ 110 (146)
T 2kup_A 56 RWPYLCLRRYGYDSNLFSFESGRRCQTGQGIFAFKCSRAEEIFNLLQDLMQCNSI 110 (146)
T ss_dssp EECGGGCSCEEEETTEEEEEECTTSSSCSEEEEEECTTHHHHHHHHHHHHTTCCT
T ss_pred EcCHHHhhhcCccCCEEEEEcCCCCCCCCCEEEEEcCCHHHHHHHHHHHHhcCcc
Confidence 4456699999999999999974321 236999999866555556666654444
No 127
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=22.97 E-value=3.2e+02 Score=27.84 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q psy3983 255 ERLKQLEVEMAKRDQDL------MEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312 (318)
Q Consensus 255 ~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (318)
.+|+|-++|..+++++- ..++....+...++.++...-+++..+++.++.-++.++..
T Consensus 294 ~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~~~~~~ 357 (551)
T 2b5u_A 294 DQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYNSRKSE 357 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
No 128
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=22.92 E-value=3.8e+02 Score=23.38 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q psy3983 268 DQDLMEAQEMIRRL 281 (318)
Q Consensus 268 ~~~~~~~~~~~~~~ 281 (318)
.+++..+......+
T Consensus 112 r~el~qArke~eKf 125 (169)
T 3k29_A 112 EVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 129
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=22.05 E-value=3.5e+02 Score=22.69 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q psy3983 260 LEVEMAKRDQDL 271 (318)
Q Consensus 260 ~~~~~~~~~~~~ 271 (318)
...+..+...+|
T Consensus 44 ~~~e~~~L~~~l 55 (135)
T 2e7s_A 44 RDDEVKRLREDI 55 (135)
T ss_dssp HHHHHHTHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 130
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=21.87 E-value=2e+02 Score=19.83 Aligned_cols=31 Identities=42% Similarity=0.539 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Q psy3983 280 RLEEQLKQLQAAKEELEARQTELQLELQPIR 310 (318)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (318)
+||.+.+.++.--.+|+.+..-++.|.+-||
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLR 37 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLR 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455555555555555555555555555444
No 131
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=21.32 E-value=5.2e+02 Score=25.68 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy3983 283 EQLKQLQAAKEELEARQTELQLEL 306 (318)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
++.+.+.++...|++...++++++
T Consensus 123 ~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 123 ARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444443
No 132
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.76 E-value=3.1e+02 Score=25.97 Aligned_cols=36 Identities=17% Similarity=0.143 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3983 269 QDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304 (318)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (318)
..+......+..|++.++..+.....|.....+++.
T Consensus 19 ~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 19 QIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555444444444444444433
Done!