RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3983
(318 letters)
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 117 bits (294), Expect = 1e-29
Identities = 134/170 (78%), Positives = 148/170 (87%)
Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
+ LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL
Sbjct: 231 DDKLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 290
Query: 204 YMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVE 263
YMRRRKPDTIDVQQMKAQAREEK AKQ QR+KLQLEIAARE+AEKK QE +RL+Q++ E
Sbjct: 291 YMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIAARERAEKKQQEYQDRLRQMQEE 350
Query: 264 MAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQS 313
M + +L+EAQ+MI RLEEQL+QLQAAKEELE RQ ELQ +Q +
Sbjct: 351 MERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEETK 400
Score = 104 bits (259), Expect = 5e-25
Identities = 100/316 (31%), Positives = 153/316 (48%), Gaps = 11/316 (3%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV DQHKMS EWE SIT WW+EH+GMLREDAMMEYLKIAQDLEMYGVNYFEI+NKK
Sbjct: 154 PQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIRNKKN 213
Query: 65 TELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRL 124
TELWLGVDALGLNIYEK+D LT + + + F KF ++ I + +
Sbjct: 214 TELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNISFN-DRKFI----IKPIDKKAPDFV 268
Query: 125 FYLQVSRSAGSRVRFPPGPNCL--LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVF 182
F+ R + G + L K + + K + +K +
Sbjct: 269 FFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAKQAQREKLQLEIA 328
Query: 183 FAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAA 242
R ++ + + M R + + ++ Q M + E+ Q +++L+
Sbjct: 329 ARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNE 388
Query: 243 REKAEKKHQESVERLK----QLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEAR 298
+ ++ +E+ +LE E+ + +++ Q+ + + + ++LQ E+ +
Sbjct: 389 LQAMMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRK 448
Query: 299 QTELQLELQPIRNQSN 314
Q E L +
Sbjct: 449 QDEAAAALLAATTPQH 464
Score = 48.4 bits (114), Expect = 2e-06
Identities = 36/47 (76%), Positives = 40/47 (85%)
Query: 83 DNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQV 129
VM QDVKKENPLQFKFRAKFYPEDV +E+IQ+ITL+LFYLQV
Sbjct: 60 KLYKKVMQQDVKKENPLQFKFRAKFYPEDVADELIQEITLKLFYLQV 106
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 93.9 bits (233), Expect = 3e-22
Identities = 54/82 (65%), Positives = 67/82 (81%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++ ++M+P WE IT W+ EH+G R++A MEYLKIAQDLEMYGVNYF I+NKKG
Sbjct: 171 PKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIRNKKG 230
Query: 65 TELWLGVDALGLNIYEKEDNLT 86
TEL LGVDALGL+IY+ E+ LT
Sbjct: 231 TELLLGVDALGLHIYDPENRLT 252
Score = 85.0 bits (210), Expect = 4e-19
Identities = 42/67 (62%), Positives = 54/67 (80%)
Query: 143 PNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHE 202
P LTPKI FPW+EIRNIS++D++F IKP+DKK F F + ++RVNK IL LC+GNH+
Sbjct: 247 PENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHD 306
Query: 203 LYMRRRK 209
L+MRRRK
Sbjct: 307 LFMRRRK 313
Score = 52.7 bits (126), Expect = 5e-08
Identities = 24/42 (57%), Positives = 31/42 (73%)
Query: 88 VMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQV 129
V+ DV KE P+ F F AKFYPE+ EE++Q+IT LF+LQV
Sbjct: 82 VLDHDVSKEEPVTFHFLAKFYPENAEEELVQEITQHLFFLQV 123
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB:
1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A
2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 90.4 bits (224), Expect = 3e-21
Identities = 60/86 (69%), Positives = 72/86 (83%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKG 64
P RV++QHK++ +WE I W +EH+GMLREDA++EYLKIAQDLEMYGVNYF IKNKKG
Sbjct: 151 PQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDLEMYGVNYFSIKNKKG 210
Query: 65 TELWLGVDALGLNIYEKEDNLTNVMS 90
+ELWLGVDALGLNIYE+ D LT +
Sbjct: 211 SELWLGVDALGLNIYEQNDRLTPKIG 236
Score = 87.0 bits (215), Expect = 7e-20
Identities = 59/64 (92%), Positives = 64/64 (100%)
Query: 147 LTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMR 206
LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHELYMR
Sbjct: 231 LTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMR 290
Query: 207 RRKP 210
RRKP
Sbjct: 291 RRKP 294
Score = 56.5 bits (136), Expect = 2e-09
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 17/95 (17%)
Query: 37 DAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKE 96
D +++ + + +++ +G+ Y ++ KG WL V +QDV+KE
Sbjct: 28 DQVVKTIGL-REVWFFGLQY---QDTKGFSTWL-------------KLNKKVTAQDVRKE 70
Query: 97 NPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSR 131
+PL FKFRAKFYPEDV EE+IQDIT RLF+LQV
Sbjct: 71 SPLLFKFRAKFYPEDVSEELIQDITQRLFFLQVKE 105
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton,
structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1
b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A
2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B
Length = 206
Score = 84.5 bits (209), Expect = 1e-19
Identities = 25/199 (12%), Positives = 53/199 (26%), Gaps = 71/199 (35%)
Query: 12 HKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT-----E 66
+ + E I K M +A + Y+K+A+ L+ YGV++F +K K
Sbjct: 74 KEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVP 133
Query: 67 LWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFY 126
LG+ + +++ KE ++ +I
Sbjct: 134 RLLGITKECVMRVDEKT-----------KEVIQEWSLT--------------NIK----- 163
Query: 127 LQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPR 186
+ + F D + +
Sbjct: 164 -----------------------RWAASPKSF-TLDFGD---------YQDGYYSVQTTE 190
Query: 187 VRVNKRILALCMGNHELYM 205
++I L G ++ +
Sbjct: 191 ---GEQIAQLIAGYIDIIL 206
Score = 37.9 bits (88), Expect = 0.002
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 106 KFYPEDVVEEIIQDITLRLFYLQV 129
KF+ D + + L L Y+Q
Sbjct: 2 KFFYSDQNVDSRDPVQLNLLYVQA 25
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics
conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A
2he7_A 2rq1_A
Length = 296
Score = 84.6 bits (209), Expect = 5e-19
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 14 MSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDA 73
E E + K ++ M A +E+L+ A+ L MYGV+ + K+ +G ++ LGV +
Sbjct: 166 NQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCS 225
Query: 74 LGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSA 133
GL +Y+ + + V K + +K R+ F+ + E Q + F L R+A
Sbjct: 226 SGLLVYKDKLRINRFPWPKVLK---ISYK-RSSFFIKIRPGEQEQYESTIGFKLPSYRAA 281
Score = 62.3 bits (151), Expect = 3e-11
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Query: 153 FPWSEIRNISFNDRKFIIKPIDKKAPD----FVFFAPRVRVNKRILALCMGNHELY 204
FPW ++ IS+ F IK + F P R K++ +C+ +H +
Sbjct: 240 FPWPKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFF 295
Score = 40.7 bits (95), Expect = 4e-04
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 20/93 (21%)
Query: 37 DAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKE 96
+ E+L + + + +G+ + + ++ WL D+ + Q +
Sbjct: 45 KRVCEHLNL-LEEDYFGLAIW---DNATSKTWL-------------DSAKEIKKQ--VRG 85
Query: 97 NPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQV 129
P F F KFYP D ++ +DIT LQ+
Sbjct: 86 VPWNFTFNVKFYPPDPA-QLTEDITRYYLCLQL 117
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion;
2.05A {Mus musculus}
Length = 222
Score = 79.9 bits (197), Expect = 6e-18
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 14 MSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT-----ELW 68
+ E I K M +A + Y+K+A+ L+ YGV++F +K K
Sbjct: 87 YVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRL 146
Query: 69 LGVDALGLNIYEKED 83
LG+ + +++
Sbjct: 147 LGITKECVMRVDEKT 161
Score = 66.4 bits (162), Expect = 5e-13
Identities = 7/57 (12%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 153 FPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRK 209
+ + I+ + + + F + D + + + ++I L G ++ ++++K
Sbjct: 168 WSLTNIKRWAASPKSFTLDFGDYQDGYYSV---QTTEGEQIAQLIAGYIDIILKKKK 221
Score = 31.0 bits (70), Expect = 0.37
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 106 KFYPEDVVEEIIQD-ITLRLFYLQVSRS 132
E++ + +D + L L Y+Q
Sbjct: 12 DLGTENLYFQSSRDPVQLNLLYVQARDD 39
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 81.9 bits (202), Expect = 8e-18
Identities = 25/197 (12%), Positives = 50/197 (25%), Gaps = 71/197 (36%)
Query: 14 MSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT-----ELW 68
+ E I K M +A + Y+K+A+ L+ YGV++F +K K
Sbjct: 241 YVKQKGERKIFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRL 300
Query: 69 LGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQ 128
LG+ + + KE ++ +I
Sbjct: 301 LGITKECVMRV-----------DEKTKEVIQEWSLT--------------NIK------- 328
Query: 129 VSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVR 188
+ + F D + +
Sbjct: 329 ---------------------RWAASPKSF-TLDFGDYQ---------DGYYSVQTTE-- 355
Query: 189 VNKRILALCMGNHELYM 205
++I L G ++ +
Sbjct: 356 -GEQIAQLIAGYIDIIL 371
Score = 44.5 bits (105), Expect = 3e-05
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 17/94 (18%)
Query: 37 DAMMEYLKIAQDLEMYGVNYFEI-KNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKK 95
+ + I + Y + + + K WL D+ + Q V++
Sbjct: 113 MTICARIGITNH-DEYSLVRELMEEKKDDELNWL-------------DHGRTLREQGVEE 158
Query: 96 ENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQV 129
L + KF+ D + + L L Y+Q
Sbjct: 159 HETLLLRR--KFFYSDQNVDSRDPVQLNLLYVQA 190
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 76.2 bits (187), Expect = 5e-16
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 13/95 (13%)
Query: 3 VSPLRVMDQHKMSPSEWESSITTWWKEHKGMLREDA-----MMEYLKIAQDLEMYGVNYF 57
+ + + + K W + I +K +L+ ++ YG +F
Sbjct: 167 LKSIVPVTKLKSKAPHWTNRILHEYKNLSTSEGVSKEMHHLQRMFLQNCWEIPTYGAAFF 226
Query: 58 EI--------KNKKGTELWLGVDALGLNIYEKEDN 84
N K +++GV+ GL++ E
Sbjct: 227 TGQIFTKASPSNHKVIPVYVGVNIKGLHLLNMETK 261
Score = 46.5 bits (110), Expect = 5e-06
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 82 EDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQV 129
+ L + + D ++E P F R P +V ++I + + + + +
Sbjct: 74 PEILAELTNLDPQRETPQLFLRRDVRLPLEVEKQIEDPLAILILFDEA 121
Score = 38.4 bits (89), Expect = 0.002
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 151 IGFPWSEIR-NISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRK 209
I + + D F I ++ K V V K ++ L + M +
Sbjct: 265 ISLKYGCFMWQLGDTDTCFQIHSMENKMSFIVHTKQAGLVVKLLMKL----NGQLMPTER 320
Query: 210 P 210
Sbjct: 321 N 321
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 74.6 bits (182), Expect = 5e-15
Identities = 28/114 (24%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 2 SVSPLRVMDQH-KMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIK 60
V +++D K S +SI W++ +GM +E AM +Y+ + ++ YG F+++
Sbjct: 399 KVEEEQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLFDVE 458
Query: 61 NKKG---TELWLGVDALGLNIYEKEDN-------LTNVMSQDVKKENPLQFKFR 104
K+G ELWLGV A +++Y++ + +++S N +
Sbjct: 459 CKEGGFPQELWLGVSADAVSVYKRGEGRPLEVFQYEHILSFGAPLANTYKIVVD 512
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 59.4 bits (144), Expect = 5e-10
Identities = 16/92 (17%), Positives = 43/92 (46%)
Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
+ + + + + +KL+ ++ +E++ + + R+ L+ E+AK ++L + Q
Sbjct: 945 KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004
Query: 276 EMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+ +EE + + E+L + E L+
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSELKEQNTLLK 1036
Score = 47.8 bits (114), Expect = 3e-06
Identities = 10/94 (10%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 224 EEKNAKQQQR-----DKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMI 278
E K + Q++ + + + E + E+L+ + +++ A +
Sbjct: 927 ENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRV 986
Query: 279 RRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
L+E++ +L+ + + + ++ +++
Sbjct: 987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Score = 45.9 bits (109), Expect = 1e-05
Identities = 15/111 (13%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Query: 201 HELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESV----ER 256
++ M R+ +I +Q+ + + + + L+ R K+ + +
Sbjct: 856 NKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARS 915
Query: 257 LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+++ + + +M+ Q I ++ K L LE + +L+
Sbjct: 916 VERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Score = 44.7 bits (106), Expect = 3e-05
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
+++ Q + EK ++ DK + E E+ + +E LK + E+ +R D +
Sbjct: 995 KLRKELHQTQTEKKTIEEWADKYKHET---EQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051
Query: 274 --AQEMIRRLEEQLKQLQAAKEELEARQ 299
+ M ++L E+ KQL+ + R
Sbjct: 1052 EITETMEKKLVEETKQLELDLNDERLRY 1079
Score = 44.7 bits (106), Expect = 3e-05
Identities = 22/101 (21%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDL-M 272
+ +EE +++ + Q E E+ K++ E QL E+ +++ L
Sbjct: 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKT 1037
Query: 273 EAQEMIRRLEEQLKQL-QAAKEELEARQTELQLELQPIRNQ 312
E +E+ RR+ +Q K++ + +++L +L+L+L R +
Sbjct: 1038 EKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 40.5 bits (95), Expect = 6e-04
Identities = 17/94 (18%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 221 QAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRR 280
Q + +++ KL++E + E+ +K H ++ QL+ ++ +++++ E +
Sbjct: 894 QCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953
Query: 281 LEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
LE E+L + L++ + +N +N
Sbjct: 954 LEITYSTE---TEKLRSDVERLRMSEEEAKNATN 984
Score = 39.7 bits (93), Expect = 0.001
Identities = 12/104 (11%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Query: 205 MRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQ-LEVE 263
+ + TI +Q + + R+ + I + LK + ++
Sbjct: 835 YQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQ 894
Query: 264 MAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
R + ++ +++ + LE + +LQ ++
Sbjct: 895 CCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKID 938
Score = 38.2 bits (89), Expect = 0.003
Identities = 23/131 (17%), Positives = 39/131 (29%), Gaps = 6/131 (4%)
Query: 183 FAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAA 242
F V KR + L R V+ E + Q K A
Sbjct: 825 FQRMYVVRKRYQCMRDATIALQALLRG---YLVRNKYQMMLREHKSIIIQ--KHVRGWLA 879
Query: 243 REKAEKKHQESVERLKQLEVEMAKRDQD-LMEAQEMIRRLEEQLKQLQAAKEELEARQTE 301
R + + V MAKR+ L + R ++ L+ +L+ + E
Sbjct: 880 RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE 939
Query: 302 LQLELQPIRNQ 312
E + + +
Sbjct: 940 QNKEYKSLLEK 950
Score = 29.3 bits (66), Expect = 1.9
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 206 RRRKPDTIDVQQMK--AQAREEKNAKQQQRDKLQLEI---AAREKAEKKHQESVERLKQL 260
RR I +Q+ + R+ + LQ + R K + +E + Q
Sbjct: 813 LRRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQK 872
Query: 261 EVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKE----ELEARQTELQLELQ 307
V + I L+ +++ A +E ++EAR E +L
Sbjct: 873 HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLH 923
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 57.3 bits (137), Expect = 2e-09
Identities = 10/96 (10%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKE----HKGMLREDAMMEYLKIAQD-LEMYGVNYFEI 59
P R + K +W K+ + + + + A+ + ++E
Sbjct: 424 PDREITPLKN-LEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKWPLLFSRFYEA 482
Query: 60 KNK-----KGTELWLGVDALGLNIYEKEDNLTNVMS 90
+++ + V+ G+ ++++ + +S
Sbjct: 483 YKFSGPPLPKSDVIVAVNWTGVYFVDEQEQVLLELS 518
Score = 36.5 bits (83), Expect = 0.011
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 153 FPWSEIRNISFNDRKFIIKP----IDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRR 208
+ EI +S + ++ P K ++ F + + ++ + +R+R
Sbjct: 517 LSFPEIMAVSSSRGTKMMAPSFTLATIKGDEYTFTSSNAEDIRDLVVTFL----EGLRKR 572
Query: 209 KPDTIDVQQMKAQAREEKN 227
+ +Q A EE
Sbjct: 573 SKYVVALQDNPNPAGEESG 591
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 51.4 bits (123), Expect = 2e-07
Identities = 18/93 (19%), Positives = 44/93 (47%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
QQ++A+ ++ + ++L+ E AAR+K + + + ++K++E ++ + +
Sbjct: 943 SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL 1002
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+ + LEE++ L E E + L
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035
Score = 51.4 bits (123), Expect = 2e-07
Identities = 14/92 (15%), Positives = 45/92 (48%)
Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
Q+++ E + +++ ++ Q A ++K +++ + E+L++ E K + + A
Sbjct: 923 QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982
Query: 276 EMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
I+++E+ + ++ +L + L+ +
Sbjct: 983 GKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014
Score = 49.1 bits (117), Expect = 1e-06
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 221 QAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRR 280
+ E Q ++ K+Q ++ E++ +E ++L++E D + + ++ I
Sbjct: 938 EEEERSQQLQAEKKKMQQQM---LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILI 994
Query: 281 LEEQLKQLQAAKEELEARQTELQLELQ 307
+E+Q +L ++ LE R ++L L
Sbjct: 995 MEDQNNKLTKERKLLEERVSDLTTNLA 1021
Score = 47.5 bits (113), Expect = 3e-06
Identities = 31/150 (20%), Positives = 68/150 (45%), Gaps = 5/150 (3%)
Query: 158 IRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQ 217
I I +N R F+ F P ++V ++ + + EL +R K +
Sbjct: 821 IFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKDEEL--QRTKERQQKAEA 878
Query: 218 MKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEM 277
+ ++ ++++ LQ ++ A + + +E RL + E+ + L E +
Sbjct: 879 ELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEI---LHEMEAR 935
Query: 278 IRRLEEQLKQLQAAKEELEARQTELQLELQ 307
I EE+ +QLQA K++++ + +L+ +L+
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965
Score = 47.5 bits (113), Expect = 4e-06
Identities = 16/122 (13%), Positives = 51/122 (41%)
Query: 191 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKH 250
K + ++ + ++ + + E + + A +++ E+
Sbjct: 870 KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEIL 929
Query: 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310
E R+++ E + + + Q+ + LEEQL++ +AA+++L+ + +++ +
Sbjct: 930 HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989
Query: 311 NQ 312
+
Sbjct: 990 DD 991
Score = 46.8 bits (111), Expect = 6e-06
Identities = 21/107 (19%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 205 MRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQ----L 260
+++ + D + ++ + +E+ +++ L +A E+ K + + + L
Sbjct: 985 IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL 1044
Query: 261 EVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
EV + K ++ E +++ R+LE + L EL+A+ EL+ +L
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091
Score = 46.8 bits (111), Expect = 7e-06
Identities = 23/104 (22%), Positives = 49/104 (47%), Gaps = 1/104 (0%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
+ ++KAQ +++ Q +L+ E + + A KK +E + L+ ++ +
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNK 317
A++ R L E+L+ L+ E+ T Q EL+ + + +K
Sbjct: 1142 AEKQKRDLSEELEALKTELEDTL-DTTATQQELRGSDYKDDDDK 1184
Score = 44.8 bits (106), Expect = 2e-05
Identities = 16/100 (16%), Positives = 47/100 (47%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
+ +++ + ++E+ ++Q+ + ++ E ++ +L+ ++AK++++L A
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAA 1100
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
+ Q ELE+ ++LQ +L+ + N
Sbjct: 1101 LARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140
Score = 44.4 bits (105), Expect = 3e-05
Identities = 25/103 (24%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAA-REKAEKKHQESVERLKQLEVEMAKRDQ--- 269
+++++K + E + +Q +LQ +IA + + KK +E L +LE E ++++
Sbjct: 1057 ELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116
Query: 270 DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
+ E + I L+E L+ +AA+ + E ++ +L EL+ ++ +
Sbjct: 1117 KIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159
Score = 44.1 bits (104), Expect = 4e-05
Identities = 10/99 (10%), Positives = 36/99 (36%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
+++ + +E + K++ + + + + E +L + E E+ L +
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
+++++L++ +L+ + Q
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ 1145
Score = 44.1 bits (104), Expect = 5e-05
Identities = 19/97 (19%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
++ + KN + +L++ + +K EK QE + ++LE E + + + E Q
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRL---KKEEKSRQELEKIKRKLEGESSDLHEQIAELQ 1080
Query: 276 EMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
I L+ QL + + + AR + + +
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117
Score = 43.7 bits (103), Expect = 6e-05
Identities = 16/94 (17%), Positives = 41/94 (43%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
+ + ++ ++ D+ R+ E++ + L + E + + +
Sbjct: 977 EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+ MI LE +LK+ + +++ELE + +L+ E
Sbjct: 1037 HESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070
Score = 41.4 bits (97), Expect = 3e-04
Identities = 16/91 (17%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAR-EKAEKKHQESVERLKQLEVEMAKRDQDLM 272
++ + R AK+Q+ +++ E+ AR E+ E++ Q+ K+++ +M ++ L
Sbjct: 906 ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLE 965
Query: 273 EAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
E + ++L+ + +++E ++
Sbjct: 966 EEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Score = 39.4 bits (92), Expect = 0.001
Identities = 18/77 (23%), Positives = 33/77 (42%)
Query: 211 DTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQD 270
+T + RE ++ ++ L+ E AAR KAEK+ ++ E L+ L+ E+
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDT 1166
Query: 271 LMEAQEMIRRLEEQLKQ 287
QE+ +
Sbjct: 1167 TATQQELRGSDYKDDDD 1183
Score = 37.5 bits (87), Expect = 0.006
Identities = 11/94 (11%), Positives = 36/94 (38%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
+ + Q E + + + +L + + A + ++ + ++ + + + +
Sbjct: 1068 ESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
QE + + + + K +L L+ EL+
Sbjct: 1128 LQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 48.7 bits (115), Expect = 1e-06
Identities = 5/57 (8%), Positives = 21/57 (36%)
Query: 11 QHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTEL 67
+ I +++ + RE++++++ +I + + F+ +
Sbjct: 182 LDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWII 238
Score = 31.7 bits (71), Expect = 0.29
Identities = 18/94 (19%), Positives = 43/94 (45%), Gaps = 12/94 (12%)
Query: 37 DAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKE 96
+++ K+ +++ YG+ +++++ WL +D N+ EK +
Sbjct: 39 QKIVDCHKV-KNVACYGLRLSHLQSEE--VHWLHLDMGVSNVREKFELAH--------PP 87
Query: 97 NPLQFKFRAKFYPEDVVEEIIQD-ITLRLFYLQV 129
+++ R ++ P+ + + +D TL FY QV
Sbjct: 88 EEWKYELRIRYLPKGFLNQFTEDKPTLNFFYQQV 121
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2,
FERM domain, transferase; 3.25A {Homo sapiens}
Length = 392
Score = 46.0 bits (108), Expect = 9e-06
Identities = 9/83 (10%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 11 QHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTEL--W 68
Q + P ++ I ++++ + E+ +M++ + + +G +
Sbjct: 202 QENLKPKQFRKMIQQTFQQYASLREEECVMKFFNTLAGFANIDQETYRCELIQGWNITVD 261
Query: 69 LGVDALGLNIYEKEDNLTNVMSQ 91
L + G+ +D +++
Sbjct: 262 LVIGPKGIRQLTSQDAKPTCLAE 284
Score = 32.1 bits (72), Expect = 0.22
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 47 QDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAK 106
+ E YG+ +K+ + WL + +K + + E ++ + +
Sbjct: 68 RLAECYGLRLKHMKSDEIH--WLHPQMTVGEVQDKY--------ECLHVEAEWRYDLQIR 117
Query: 107 FYPEDVVEEIIQD-ITLRLFYLQV 129
+ PED +E + +D TL FY Q+
Sbjct: 118 YLPEDFMESLKEDRTTLLYFYQQL 141
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 45.6 bits (107), Expect = 2e-05
Identities = 61/359 (16%), Positives = 122/359 (33%), Gaps = 114/359 (31%)
Query: 28 KEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGT-ELWLGVDALGLNIYEKEDNLT 86
+ LR+ A++E L+ A+++ + GV G+ + W+ +D
Sbjct: 134 LQPYLKLRQ-ALLE-LRPAKNVLIDGV--------LGSGKTWVALDVC------------ 171
Query: 87 NVMSQDVKKENPLQ-F--KFRAKFYPEDVVEEIIQDITLRL---FYLQVSRSAGSRVRF- 139
+S V+ + + F + PE V+E ++Q + ++ + + S+ ++R
Sbjct: 172 --LSYKVQCKMDFKIFWLNLKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 140 ------------PPGPNCLL------TPKIGFPWSEIRNISFNDR-KFIIKPIDKKAPDF 180
P NCLL K W+ +FN K ++ K+ DF
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKA---WN-----AFNLSCKILLTTRFKQVTDF 280
Query: 181 VFFAPRVRV-------------NKRILALCMGN------HELYMRRRKPDTIDVQQMKAQ 221
+ A + K +L + E + P + + +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE--VLTTNPRRLSI--IAES 336
Query: 222 AREE----KNAKQQQRDKL----QLEIAAREKAEKKH--------QESV----ERLKQLE 261
R+ N K DKL + + E AE + S L +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 262 VEMAKRDQDLMEAQEMIRR--LEEQLKQLQAAKEELEARQTELQLEL-QPIRNQSNLNK 317
++ K D ++ ++ + +E+Q K E + LEL + N+ L++
Sbjct: 397 FDVIKSDVMVV-VNKLHKYSLVEKQPK-------ESTISIPSIYLELKVKLENEYALHR 447
Score = 37.9 bits (87), Expect = 0.004
Identities = 41/276 (14%), Positives = 81/276 (29%), Gaps = 74/276 (26%)
Query: 48 DLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKF 107
D E Y + K ++ + + +D +++S K+E
Sbjct: 8 DFETGEHQY---QYKDILSVFEDAFVDNFDCKDVQDMPKSILS---KEE----------- 50
Query: 108 YPEDVVEEIIQ-----DITLRLFYLQVSRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNIS 162
++ II TLRLF+ +S+ +F +L F S I+
Sbjct: 51 -----IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE---VLRINYKFLMSPIKT-- 100
Query: 163 FNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL--YMRRRKPDTIDVQQMKA 220
+ ++ R R L N Y R + ++Q
Sbjct: 101 --------EQRQPSMMTRMYIEQRDR-------LYNDNQVFAKYNVSRLQPYLKLRQALL 145
Query: 221 QAREEKN---------AKQQQRDKLQLEIAAREKAEKKH------------QESVERLKQ 259
+ R KN K + L++ K + K L+
Sbjct: 146 ELRPAKNVLIDGVLGSGKTW----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEEL 295
L+ + + D + + ++ ++ +QA L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 44.8 bits (107), Expect = 3e-05
Identities = 23/115 (20%), Positives = 46/115 (40%), Gaps = 29/115 (25%)
Query: 209 KPDTID-----VQQMK----AQAREEKNAKQQQRDKLQLEIA----------AREKAEKK 249
P+ ID Q++ A +E+ Q++ ++ EIA A + E++
Sbjct: 399 APEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWERERE 458
Query: 250 HQESVERLKQ------LEVEMAKRDQDLMEAQEM----IRRLEEQLKQLQAAKEE 294
+ + E+E+A+R DL A E+ + +LE +++ L
Sbjct: 459 ILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRG 513
Score = 40.6 bits (96), Expect = 6e-04
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 4/87 (4%)
Query: 232 QRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAA 291
+R KLQLEI ++K +S ERLK +E E+AK +++ + + R E L++L+ A
Sbjct: 407 ERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREA 466
Query: 292 KEELEARQTELQLELQPIRNQSNLNKV 318
+ L+ E++ E++ Q +LN+
Sbjct: 467 QHRLD----EVRREIELAERQYDLNRA 489
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 41.7 bits (97), Expect = 9e-05
Identities = 14/87 (16%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 221 QAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRR 280
+ +E + ++ R++ + + + A K ++ E AK+D + E +R
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWR-------EKAKKDLE-----EWNQR 126
Query: 281 LEEQLKQLQ-----AAKEELEARQTEL 302
EQ+++ + A K + ++
Sbjct: 127 QSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 33.6 bits (76), Expect = 0.046
Identities = 12/75 (16%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 206 RRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQL-EIAAREKAE--KKHQESVERLKQL-- 260
++P++I + + + R ++ + + + E A ++ E ++ E VE+ K
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 261 ---EVEMAKRDQDLM 272
+ + D D++
Sbjct: 140 IADKAFYQQPDADII 154
Score = 29.7 bits (66), Expect = 0.76
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 245 KAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA--RQTEL 302
+A++ QE E +++ E KR L E + +E++ + + AK++LE ++
Sbjct: 76 QADRLTQEP-ESIRKWREEQRKR---LQELDAASKVMEQEWR--EKAKKDLEEWNQRQSE 129
Query: 303 QLELQPIRNQ 312
Q+E I N+
Sbjct: 130 QVEKNKINNR 139
Score = 28.6 bits (63), Expect = 1.9
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 264 MAKRDQDLMEAQEMIRRL-EEQLKQLQAAKEELEARQTELQLE 305
+A+ D+ L + E IR+ EEQ K+LQ + + E + +
Sbjct: 74 IAQADR-LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREK 115
>3ibp_A Chromosome partition protein MUKB; structural maintenance of
chromosomes, SMC, condensin, chromosome segregation,
hinge, dimerization domain; 3.10A {Escherichia coli}
Length = 302
Score = 39.3 bits (91), Expect = 0.001
Identities = 23/97 (23%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEI---AAREKAEKKHQESVERLKQLEVEMAKRDQD 270
+ + AREE+ A +Q++++LQ I R Q S+ +L + E QD
Sbjct: 7 SLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQD 66
Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+ E +++L E+ ++ ++E+ AR+ + E++
Sbjct: 67 VTEY---LQQLLEREREAIVERDEVGARKNAVDEEIE 100
Score = 32.4 bits (73), Expect = 0.16
Identities = 15/82 (18%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 237 QLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEEL- 295
+ A E+ + ++ E+L+ + +R + AQ + +L EQ + + +++
Sbjct: 11 SVSNAREERMALRQEQ--EQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVT 68
Query: 296 EARQTELQLELQPIRNQSNLNK 317
E Q L+ E + I + +
Sbjct: 69 EYLQQLLEREREAIVERDEVGA 90
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 39.8 bits (92), Expect = 0.001
Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 206 RRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMA 265
+ + + +E + ++Q+ L+ + EKA K+ E + VE
Sbjct: 665 TTNSQEAAAKHEAQRLEQEARGRLERQK---ILDQSEAEKARKELLE--LEAMSMAVEST 719
Query: 266 KRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
+ E++ R+E + + AK + +A E + EL+ ++
Sbjct: 720 GNAKAEAESRAEAARIEGE-GSVLQAKLKAQALAIETEAELERVKKV 765
Score = 35.9 bits (82), Expect = 0.016
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 7/102 (6%)
Query: 211 DTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQD 270
DT + +AR++ Q +++ + E +++ +++++R QL +E+ Q+
Sbjct: 611 DTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQE 670
Query: 271 LMEAQEMIR-------RLEEQLKQLQAAKEELEARQTELQLE 305
E R RLE Q Q+ E+ EL+
Sbjct: 671 AAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAM 712
Score = 35.6 bits (81), Expect = 0.023
Identities = 20/115 (17%), Positives = 38/115 (33%)
Query: 201 HELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQL 260
EL ++ + +A++R E + + LQ ++ A+ A + E K
Sbjct: 707 LELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVR 766
Query: 261 EVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNL 315
E+E+ L ++L + E T L + Q L
Sbjct: 767 EMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVKL 821
Score = 30.9 bits (69), Expect = 0.54
Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 6/91 (6%)
Query: 206 RRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMA 265
R ++ ++KAQA + + +R K E+ + E + + VE
Sbjct: 734 RIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAK 793
Query: 266 KRDQDLMEAQEMIRRL------EEQLKQLQA 290
K + R E Q+K LQ+
Sbjct: 794 KFKEMTEALGPGTIRDLAVAGPEMQVKLLQS 824
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 37.6 bits (87), Expect = 0.001
Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 220 AQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIR 279
A+ +E + +++ +L+ + EK+E + +E E++ L E + Q+ +
Sbjct: 9 AEREKEMASMKEEFTRLKEAL---EKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLA 65
Query: 280 RLEEQLKQLQAAKEELEARQTELQLELQ 307
EE+ QL K +LEA+ E+ L+
Sbjct: 66 DAEERCDQLIKNKIQLEAKVKEMNKRLE 93
Score = 34.5 bits (79), Expect = 0.011
Identities = 22/103 (21%), Positives = 50/103 (48%), Gaps = 3/103 (2%)
Query: 205 MRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEM 264
+ + + ++++ +EKN Q Q +Q E AE++ + ++ QLE ++
Sbjct: 29 LEKSEARRKELEEKMVSLLQEKNDLQLQ---VQAEQDNLADAEERCDQLIKNKIQLEAKV 85
Query: 265 AKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+ ++ L + +EM L + ++L+ EL+ +L+L L
Sbjct: 86 KEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDLELTLA 128
Score = 26.0 bits (57), Expect = 9.1
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 262 VEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
++ A+R++++ +E RL+E L++ +A ++ELE + L E ++ Q
Sbjct: 6 LKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQ 56
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 39.3 bits (92), Expect = 0.001
Identities = 10/107 (9%), Positives = 31/107 (28%), Gaps = 8/107 (7%)
Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLE----- 261
I M+ + + +K + +
Sbjct: 105 TTDWKQIRSIIMR-ENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAG 163
Query: 262 --VEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306
V+ A + + + + L +L++L+ ++ + + L L++
Sbjct: 164 PMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEALLLQV 210
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 38.9 bits (91), Expect = 0.002
Identities = 6/102 (5%), Positives = 21/102 (20%), Gaps = 6/102 (5%)
Query: 201 HELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQ- 259
+ + + + + + + + Q + L
Sbjct: 892 NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN 951
Query: 260 -----LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELE 296
E + Q + + L +++E
Sbjct: 952 GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIE 993
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 38.8 bits (89), Expect = 0.002
Identities = 21/102 (20%), Positives = 49/102 (48%), Gaps = 1/102 (0%)
Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
++++ + + ++A+ + +++ + E+K + E LKQL +M L++ Q
Sbjct: 487 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ 546
Query: 276 EMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNK 317
E L+ Q +Q Q KE + ++ E+Q ++ + K
Sbjct: 547 ERTLALKLQ-EQEQLLKEGFQKESRIMKNEIQDLQTKMRRRK 587
Score = 36.9 bits (84), Expect = 0.008
Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 2/98 (2%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
+ Q +++E Q D+ E + E+ ES + ++ EM ++++ +ME
Sbjct: 460 ILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQ 519
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
+E R +E LKQL E + + Q ++ Q
Sbjct: 520 KE--RSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 555
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 36.6 bits (84), Expect = 0.003
Identities = 19/98 (19%), Positives = 42/98 (42%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
+++ R E + + R + + E ++E ER + LE ++ D+D +
Sbjct: 15 LEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQL 74
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
Q ++ +L+AR T LQ E++ +++
Sbjct: 75 QAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN 112
Score = 33.2 bits (75), Expect = 0.052
Identities = 15/98 (15%), Positives = 34/98 (34%), Gaps = 4/98 (4%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEI----AAREKAEKKHQESVERLKQLEVEMAKRDQ 269
++Q+ K+ + +LQ + R + + R+ L+ E+
Sbjct: 52 ELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111
Query: 270 DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+L + + + ++ L + K LE LQ
Sbjct: 112 NLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQ 149
Score = 27.4 bits (60), Expect = 4.1
Identities = 15/103 (14%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 205 MRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEM 264
+R + +++ + + + + +LQ E ++ + + QL+ +
Sbjct: 22 LRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDK---DYYQLQAIL 78
Query: 265 AKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+D EMI L+ ++ LQ + L+ +++ E +
Sbjct: 79 EAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERK 121
Score = 27.0 bits (59), Expect = 6.8
Identities = 15/84 (17%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
D + + +++++ EK E + +E+ + L E E + DL
Sbjct: 84 DRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNY 143
Query: 274 AQEMIR-RLEEQLKQLQAAKEELE 296
+ ++ RLE+++ + + K L
Sbjct: 144 KLKSLQQRLEQEVNEHKVTKARLT 167
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 37.7 bits (87), Expect = 0.004
Identities = 10/70 (14%), Positives = 29/70 (41%)
Query: 243 REKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTEL 302
+ K+ + L+ L+ +AK + + ++ +L + Q +++ + +E
Sbjct: 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEY 147
Query: 303 QLELQPIRNQ 312
E++ N
Sbjct: 148 NTEMELHYNY 157
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 37.3 bits (87), Expect = 0.007
Identities = 12/111 (10%), Positives = 26/111 (23%), Gaps = 13/111 (11%)
Query: 206 RRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERL-KQLEVEM 264
T V + + A Q + L+ + E + + + QL
Sbjct: 898 LENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELN 957
Query: 265 AKRDQDLME------------AQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
+L E + + L +++E
Sbjct: 958 YNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHH 1008
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 35.9 bits (82), Expect = 0.013
Identities = 23/124 (18%), Positives = 60/124 (48%), Gaps = 8/124 (6%)
Query: 201 HELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQL 260
+ELY RR K + + + ++ + + + + ++K E+ Q V+R+K+
Sbjct: 295 YELY-RRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEK 353
Query: 261 EVEMAKRDQDLMEAQEMIRR-LEEQLKQLQAAKEELEARQTELQL------ELQPIRNQS 313
E E+ + +++L E + +++ +++ K+L+ K+ L+ + LQ +Q+
Sbjct: 354 EAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQA 413
Query: 314 NLNK 317
++
Sbjct: 414 GGSQ 417
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 36.2 bits (83), Expect = 0.014
Identities = 47/321 (14%), Positives = 89/321 (27%), Gaps = 118/321 (36%)
Query: 30 HKGMLREDAMMEYLK--IAQDL---------EMYGVNYFEI--KN-KKGTELWLGVDALG 75
+GM M Y AQD+ + YG + +I N T + G G
Sbjct: 1628 EQGM----GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK--G 1681
Query: 76 LNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDVVEEIIQDITLRLFYLQVSRSAGS 135
I E N + F + E+I ++I +
Sbjct: 1682 KRIRE------NYSA----------MIFETIVDGKLKTEKIFKEINEHS----------T 1715
Query: 136 RVRFPPGPNCLLT------PKIGF-----PWSEIRNISFNDRKFIIKPIDKKAPDFVF-- 182
F LL+ P + + ++++ K +I D F
Sbjct: 1716 SYTF-RSEKGLLSATQFTQPAL-TLMEKAAFEDLKS------KGLIP------ADATFAG 1761
Query: 183 -----------------FAPRVR-VNKR--ILALCMGNHEL----Y-MRRRKPDTIDVQQ 217
V V R + + + EL Y M P +
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV-AAS 1820
Query: 218 MKAQAREEKNAKQQQRDKLQLEIA-----------AREKAEKKHQESVERLKQLEVEMAK 266
+A + + +R +EI A + +++ + + +
Sbjct: 1821 FSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL------RALDTVTNVLNFIKL 1874
Query: 267 RDQDLMEAQE--MIRRLEEQL 285
+ D++E Q+ + +E L
Sbjct: 1875 QKIDIIELQKSLSLEEVEGHL 1895
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 34.8 bits (79), Expect = 0.029
Identities = 17/115 (14%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 205 MRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEM 264
+ + +D + K Q + A+ ++ + + + + E + Q ++K+ ++
Sbjct: 295 LAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEME-QVFEMKVKEKVQKL 353
Query: 265 AKRDQDLMEAQE-MIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
+ +L E M + LE Q K+L+ + + E + + + + + Q++ +
Sbjct: 354 KDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTL 408
Score = 31.7 bits (71), Expect = 0.28
Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 13/125 (10%)
Query: 191 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKH 250
R LA N + + T + R E AK ++ E+ + E K
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKM-----EMEMEQVFEMKV 346
Query: 251 QESVERLKQLEVEMAKRDQDLMEA--------QEMIRRLEEQLKQLQAAKEELEARQTEL 302
+E V++LK E E+ +R + + + +E R+ E++ +A + LE + +
Sbjct: 347 KEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSR 406
Query: 303 QLELQ 307
LE
Sbjct: 407 TLEKN 411
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 34.4 bits (79), Expect = 0.036
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 4/95 (4%)
Query: 212 TIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDL 271
ID K A + +L A + A + +RL +L + A L
Sbjct: 62 EIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNY----QRLSKLYGQKATSLDTL 117
Query: 272 MEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306
A+ + + ++ +Q ++ E + L
Sbjct: 118 NTAKATLNNAKAEMDVVQENIKQAEIEVNTAETNL 152
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 32.3 bits (74), Expect = 0.039
Identities = 8/40 (20%), Positives = 23/40 (57%)
Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310
L +A I ++ + ++L + ++ L R+ +L+ +L+ +
Sbjct: 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 34.5 bits (80), Expect = 0.045
Identities = 11/71 (15%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 235 KLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEE 294
K++L K+ ++ ++ +++ E + A + Q+ +A + + +Q++ K+
Sbjct: 384 KVRLRSFTTPPNLKELEQKLDEVRK-EKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKS 442
Query: 295 LEARQTELQLE 305
+ +Q + E
Sbjct: 443 WKEKQGQENSE 453
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 33.9 bits (78), Expect = 0.061
Identities = 12/100 (12%), Positives = 36/100 (36%)
Query: 206 RRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMA 265
R + + + EE K ++ K E + ++ + +
Sbjct: 165 LSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQG 224
Query: 266 KRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLE 305
R EA+ + + +QL+A ++++ + +++ +
Sbjct: 225 PRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKK 264
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 33.9 bits (78), Expect = 0.075
Identities = 20/116 (17%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 205 MRRR--KPDTID-VQQMKAQARE---EKNAKQQQRDKLQLEIAAREKAEKKHQESVERLK 258
RRR PD +D + + + R A ++ + + A++KA++ ++ E
Sbjct: 26 QRRRFADPDIVDAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPP 85
Query: 259 QLEVEMAK--------RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306
Q++ +++ +++ + L +Q+ L ++LE + +L L +
Sbjct: 86 QVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNV 141
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding
protein, fatty acid, lipid metabolism, structural
genomics; HET: COA PLM; 2.00A {Homo sapiens}
Length = 89
Score = 31.4 bits (71), Expect = 0.076
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 27 WKEHKGMLREDAMMEYLKIAQDL-EMYGV 54
W KG+ EDA Y+ A++L E YG+
Sbjct: 61 WNLKKGLSTEDATSAYISKAKELIEKYGI 89
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil,
alanine, axial stagger, radius, SIDE-chain packing,
crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Length = 147
Score = 32.4 bits (73), Expect = 0.081
Identities = 18/89 (20%), Positives = 48/89 (53%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
++ ++++A++++ + Q +L+ E A++K++E +L +E ++ + ++ +
Sbjct: 40 MKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELS 99
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQ 303
+ LEE+LK + + LE + EL
Sbjct: 100 EGKCAELEEELKTVTNNLKSLEDKVEELL 128
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle
protein; 2.50A {Gallus gallus}
Length = 101
Score = 31.4 bits (71), Expect = 0.082
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 7/86 (8%)
Query: 223 REEKNAKQQQRDKLQLEIAAREKAEKKHQESV----ERLKQLEVEMAKRDQDLMEAQEMI 278
+ +K + ++ + + E K+ +E ++LK E E+ K + + EAQE
Sbjct: 15 KLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQE-- 72
Query: 279 RRLEEQLKQLQAAKEELEARQTELQL 304
+LE+ K+ A+ E+ + +QL
Sbjct: 73 -KLEQAEKKATDAEAEVASLNRRIQL 97
Score = 26.0 bits (57), Expect = 7.3
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 229 KQQQRDKLQLEIAA--REKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLK 286
K+ Q KL E A E+AE +++ +R KQLE E + L ++ + + E +K
Sbjct: 9 KKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68
Query: 287 QLQAAKEELEARQTELQLELQ 307
+ Q E+ E + T+ + E+
Sbjct: 69 EAQEKLEQAEKKATDAEAEVA 89
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty
acid, acetylation, alternative splicing, lipid-binding,
transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A
1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Length = 87
Score = 31.4 bits (71), Expect = 0.085
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 10 DQHKMSPSEW---ESSITTWWKEHKGMLREDAMMEYLKIAQDL-EMYGV 54
D + P + W E KG +EDAM Y+ ++L + YG+
Sbjct: 39 DINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKYGI 87
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 33.4 bits (77), Expect = 0.099
Identities = 19/104 (18%), Positives = 41/104 (39%), Gaps = 7/104 (6%)
Query: 203 LYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEV 262
L +R+ + + D+ + + +E ++Q L+ +E + + V +V
Sbjct: 57 LDLRKGELRSKDLPGIIS-TWQELRQLREQIRSLE---EEKEAVTEAVRALVVNQDNSQV 112
Query: 263 EMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306
+ + Q L R + +QL L + +LE + L L
Sbjct: 113 QQDPQYQSLRA--RG-REIRKQLTLLYPKEAQLEEQFYLRALRL 153
Score = 30.7 bits (70), Expect = 0.60
Identities = 10/79 (12%), Positives = 31/79 (39%), Gaps = 8/79 (10%)
Query: 239 EIAAREKAEKKHQESVERLKQL------EVEMAKRDQDLMEAQ--EMIRRLEEQLKQLQA 290
I + + ++ +E + L++ V +QD + Q + L + ++++
Sbjct: 71 GIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRK 130
Query: 291 AKEELEARQTELQLELQPI 309
L ++ +L+ +
Sbjct: 131 QLTLLYPKEAQLEEQFYLR 149
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 32.7 bits (74), Expect = 0.12
Identities = 16/94 (17%), Positives = 49/94 (52%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
++ ++++A++++ + Q +L+ E A++K++E +L +E ++ + ++
Sbjct: 126 GMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAEL 185
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
++ LEE++K + + LEA+ + +
Sbjct: 186 SEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKED 219
Score = 32.7 bits (74), Expect = 0.12
Identities = 17/97 (17%), Positives = 46/97 (47%)
Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
+++ + ++ ++ ++ +L + E++ + LK LE + K Q + +
Sbjct: 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYE 222
Query: 276 EMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
E I+ L ++LK+ + E E T+L+ + + ++
Sbjct: 223 EEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDE 259
Score = 31.2 bits (70), Expect = 0.34
Identities = 17/100 (17%), Positives = 46/100 (46%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
+Q++ + + + D+L A + A++K + + ++ E ++A ++ +
Sbjct: 36 SKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLF 95
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
+E + R +E+L EE E E + ++ I +++
Sbjct: 96 EEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Score = 30.8 bits (69), Expect = 0.53
Identities = 18/98 (18%), Positives = 38/98 (38%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
+Q +K + + + ++ E + ++LK E E+ K + L +A
Sbjct: 8 MQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDA 67
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
QE + E++ +A L R + EL + +
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQER 105
Score = 30.4 bits (68), Expect = 0.77
Identities = 17/97 (17%), Positives = 37/97 (38%)
Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
+A Q ++L A +K +E+ + + E M + + +
Sbjct: 79 TDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDE 138
Query: 276 EMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
E + E QLK+ + E+ + + E+ +L I +
Sbjct: 139 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESD 175
Score = 30.0 bits (67), Expect = 0.97
Identities = 14/94 (14%), Positives = 39/94 (41%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
D + + ++++ ++ + KL+ +K + +++ E+L+ E + + D+
Sbjct: 28 DKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVAS 87
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
I+ EE+L + Q + E +
Sbjct: 88 LNRRIQLFEEELDRAQERLATALQKLEEAEKAAD 121
Score = 29.6 bits (66), Expect = 1.2
Identities = 17/102 (16%), Positives = 43/102 (42%)
Query: 206 RRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMA 265
R + D ++ + Q +E K+ + K + E + + ER + E + A
Sbjct: 132 SRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCA 191
Query: 266 KRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+ ++++ ++ LE Q ++ +++ E L +L+
Sbjct: 192 ELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLK 233
Score = 29.6 bits (66), Expect = 1.3
Identities = 15/102 (14%), Positives = 39/102 (38%)
Query: 206 RRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMA 265
R +++ + A E + + + Q + E E + +E+ + + +
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYE 163
Query: 266 KRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+ + L+ + + R EE+ + + ELE + L+
Sbjct: 164 EVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLK 205
Score = 29.6 bits (66), Expect = 1.3
Identities = 15/93 (16%), Positives = 31/93 (33%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
+ + E L+ E +E K E E +K + + + +
Sbjct: 155 AEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKY 214
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+ + EE++K L +E E R + +
Sbjct: 215 SQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Score = 28.8 bits (64), Expect = 2.0
Identities = 12/73 (16%), Positives = 33/73 (45%)
Query: 235 KLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEE 294
K+Q+ +E A + E+ K E + + +L+ Q+ ++ E++L + A ++
Sbjct: 7 KMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKD 66
Query: 295 LEARQTELQLELQ 307
+ + + +
Sbjct: 67 AQEKLELAEKKAT 79
Score = 28.8 bits (64), Expect = 2.2
Identities = 15/94 (15%), Positives = 41/94 (43%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
DV + + + + + +++L + E+AEK ES +K +E K ++ +
Sbjct: 84 DVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEI 143
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+ ++ + + EE+ + ++ +L+
Sbjct: 144 QEIQLKEAKHIAEDADRKYEEVARKLVIIESDLE 177
Score = 28.5 bits (63), Expect = 2.5
Identities = 18/88 (20%), Positives = 40/88 (45%)
Query: 230 QQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQ 289
Q + + + ++AE + + +R KQLE E+ + L ++ + + E LK Q
Sbjct: 9 QMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQ 68
Query: 290 AAKEELEARQTELQLELQPIRNQSNLNK 317
E E + T+ + ++ + + L +
Sbjct: 69 EKLELAEKKATDAEADVASLNRRIQLFE 96
Score = 28.5 bits (63), Expect = 2.6
Identities = 16/98 (16%), Positives = 39/98 (39%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
+ + + E + + + L+ A EK +K + E +K L ++ + + A
Sbjct: 183 AELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFA 242
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
+ + +LE+ + L+ + + + EL N
Sbjct: 243 ERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280
Score = 28.1 bits (62), Expect = 3.8
Identities = 14/99 (14%), Positives = 44/99 (44%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
D+++ + +A + + ++++ + E + ++ ++ + E E+ L E
Sbjct: 175 DLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKE 234
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
A+ E + +L+ + ++LE +L+ + I +
Sbjct: 235 AETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEE 273
Score = 27.7 bits (61), Expect = 5.7
Identities = 9/94 (9%), Positives = 36/94 (38%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
++ + + + + + E++ + ERL ++ + ++ E
Sbjct: 63 ALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADE 122
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
++ ++ +E + ++ + E E + E + +
Sbjct: 123 SERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 156
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Length = 83
Score = 30.8 bits (70), Expect = 0.12
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310
L +A E I+ + + Q ++L+ + L+ +++ +
Sbjct: 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle
protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Length = 101
Score = 31.0 bits (70), Expect = 0.13
Identities = 12/89 (13%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
Q +K + +Q + ++ E + ++L+ E + ++L +++
Sbjct: 12 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSE 71
Query: 276 EMIRRLEEQLKQLQAAKEELEARQTELQL 304
+ L + A+ E+ + +QL
Sbjct: 72 D---SLLFAEENAAKAESEVASLNRRIQL 97
Score = 27.9 bits (62), Expect = 1.7
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 229 KQQQRDKLQLEIAAR--EKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLK 286
K+ Q KL E A E+AE + + ER KQLE ++ + ++ L ++ ++ E+L
Sbjct: 9 KKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68
Query: 287 QLQAAKEELEARQTELQLELQ 307
+ + + E + + E+
Sbjct: 69 KSEDSLLFAEENAAKAESEVA 89
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport
protein; NMR {Saccharomyces cerevisiae}
Length = 86
Score = 30.6 bits (69), Expect = 0.14
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 27 WKEHKGMLREDAMMEYLKIAQDL 49
W+ KG +EDA EY+ + L
Sbjct: 58 WENLKGKSQEDAEKEYIALVDQL 80
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 33.0 bits (74), Expect = 0.14
Identities = 15/106 (14%), Positives = 33/106 (31%)
Query: 203 LYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEV 262
L + + + +Q R + L+ + + + L +
Sbjct: 21 LSEQEQTLVQMIHEQSLLLNRLPPTLDENSLAPLKSLSQKQITLSGQMNTEMSALDATKK 80
Query: 263 EMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP 308
M DL + + + L+ Q KQL E+++ +P
Sbjct: 81 GMILEPTDLAKLFALKQDLQIQFKQLSLLHNEIQSILNPQHSAPKP 126
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 33.3 bits (76), Expect = 0.14
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQL-KQLQAAKEELEARQTELQLE 305
K+Q+ E + + V + K ++ +++ E+ + L L K L KE +
Sbjct: 1860 TAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQFSKT 1919
Query: 306 LQPIRNQSNL 315
Q + +
Sbjct: 1920 SQELIGNCII 1929
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 32.4 bits (73), Expect = 0.15
Identities = 13/102 (12%), Positives = 43/102 (42%), Gaps = 2/102 (1%)
Query: 213 IDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLM 272
I++ + + + +++R L + +E K E L+++++K +Q L
Sbjct: 11 IEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQ 70
Query: 273 EAQEMIRRLEEQLKQLQAAKE--ELEARQTELQLELQPIRNQ 312
+ I +++++ ++++ +E L + + +
Sbjct: 71 DTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANRE 112
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly,
membrane fusion protein, drug efflux pump, periplasmic
protein; 2.99A {Escherichia coli}
Length = 341
Score = 32.3 bits (74), Expect = 0.17
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 7/96 (7%)
Query: 211 DTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQD 270
D + + + QR + + A + A + R ++L A QD
Sbjct: 63 DPEQAENQIKEVEATLMELRAQRQQAE---AELKLARVTY----SRQQRLAQTQAVSQQD 115
Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306
L A + + Q+ + A + +A + L
Sbjct: 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNL 151
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 116
Score = 31.1 bits (70), Expect = 0.17
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 27 WKEHKGMLREDAMMEYLKIAQDL 49
W + +E A Y+ + L
Sbjct: 73 WNALGSLPKEAARQNYVDLVSSL 95
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 32.5 bits (75), Expect = 0.20
Identities = 7/36 (19%), Positives = 21/36 (58%)
Query: 264 MAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299
+A RD++L+ + + L+++ +++ E L + +
Sbjct: 18 LATRDKELVSLVDKVLELDKRRREIIKRLEALRSER 53
Score = 31.3 bits (72), Expect = 0.44
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 234 DKLQLEIAAREKAEKKHQESVERLKQL------EVEMAKRDQDLMEAQEMIRRLEEQLKQ 287
L ++ +K ++ + +E L+ E+ KR+ + E+ R++E ++
Sbjct: 26 VSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGK--DTTEIQNRVKELKEE 83
Query: 288 LQAAKEELEARQTELQLELQPIRN 311
+ +EEL + EL+ L I N
Sbjct: 84 IDRLEEELRKVEEELKNTLLWIPN 107
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein,
developmental protein, structural protei
phosphorylation, transport, microtubule; 2.10A {Homo
sapiens}
Length = 111
Score = 30.7 bits (69), Expect = 0.20
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 244 EKAEKKHQESVERLKQ-LEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTEL 302
E+ + Q +RLK +E K + ++ + + LE+ L Q +A KE+L EL
Sbjct: 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVREL 61
Query: 303 QLE 305
+
Sbjct: 62 EQA 64
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 32.2 bits (73), Expect = 0.25
Identities = 9/73 (12%), Positives = 26/73 (35%)
Query: 233 RDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAK 292
R L +K + E L + + K + +++ L ++ ++L
Sbjct: 1895 RHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKN 1954
Query: 293 EELEARQTELQLE 305
E+ + ++ +
Sbjct: 1955 EQANQKLKQMVQD 1967
>2lbb_A Acyl COA binding protein; protein binding, structural genomi
seattle structural genomics center for infectious
disease,; NMR {Babesia bovis}
Length = 96
Score = 29.9 bits (67), Expect = 0.27
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 27 WKEHKGMLREDAMMEYLKIAQDL 49
W +GM E A Y+K+ L
Sbjct: 68 WNALRGMSTESAKEAYVKLLDTL 90
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Length = 250
Score = 31.3 bits (70), Expect = 0.35
Identities = 6/69 (8%), Positives = 25/69 (36%)
Query: 244 EKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
+ +++ S ++++QL + L ++ + +L + ++++
Sbjct: 144 MEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQLYHQVSKIE 203
Query: 304 LELQPIRNQ 312
E +
Sbjct: 204 WEYECEPGM 212
Score = 30.9 bits (69), Expect = 0.49
Identities = 8/86 (9%), Positives = 33/86 (38%)
Query: 229 KQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQL 288
++ R+ + + + K Q+ ++ +++ + ++++ E + + QL
Sbjct: 136 REACRETYMEFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDTTVTIPSAVYVAQL 195
Query: 289 QAAKEELEARQTELQLELQPIRNQSN 314
++E ++ I + +
Sbjct: 196 YHQVSKIEWEYECEPGMVKGIHHGPS 221
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent
oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP:
h.4.8.1 PDB: 1ohh_H* 1hf9_A
Length = 84
Score = 29.3 bits (65), Expect = 0.39
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Query: 219 KAQAREEKNAKQQQRDKLQL-------EIAAREKAEKKHQESVERLKQLEVEMAKRDQD 270
+ QA EE+ + + +++L EI+ K ++ Q+ +ER KQ ++ + + D
Sbjct: 25 REQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQSEDD 83
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA
MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Length = 89
Score = 29.5 bits (66), Expect = 0.41
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 27 WKEHKGMLREDAMMEYLKIAQDL 49
WK + + REDA Y+ I ++
Sbjct: 61 WKSVENLNREDAQKRYVDIVSEI 83
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.41
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 273 EAQEMIRRLEEQLKQLQAAKEELEARQTELQLE 305
E Q +++L+ LK L A + A + +E
Sbjct: 18 EKQA-LKKLQASLK-LYAD-DSAPALAIKATME 47
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein
metal transport, hydrolase; HET: NAG; 2.91A
{Streptococcus pneumoniae} SCOP: h.4.19.1
Length = 125
Score = 29.8 bits (66), Expect = 0.46
Identities = 20/94 (21%), Positives = 45/94 (47%)
Query: 219 KAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMI 278
++ E AK+ R LQ ++ A++ K +E +++ +L+ E+AK + L A+E
Sbjct: 32 IDESESEDYAKEGFRAPLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKAAEENN 91
Query: 279 RRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
+ + L+ +A + + +L+ N+
Sbjct: 92 NVEDYFKEGLEKTIAAKKAELEKTEADLKKAVNE 125
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 31.1 bits (71), Expect = 0.49
Identities = 10/75 (13%), Positives = 26/75 (34%), Gaps = 7/75 (9%)
Query: 239 EIAAREKAEKKHQESVERLKQL------EVEMAKRD-QDLMEAQEMIRRLEEQLKQLQAA 291
EI A K K + ++ + E+ + +D + +L + K++
Sbjct: 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK 93
Query: 292 KEELEARQTELQLEL 306
+ E + ++
Sbjct: 94 EAEADKNLRSKINQV 108
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Length = 126
Score = 29.9 bits (67), Expect = 0.52
Identities = 12/74 (16%), Positives = 29/74 (39%), Gaps = 9/74 (12%)
Query: 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRL---EEQLKQLQAAKEELEARQTELQ 303
+++ VERL++LE + +++ R+ + ++ L + L
Sbjct: 50 GQEYVCLVERLRELEPGEPLDEAARGMKFDLLVRILENDAAVRDL------ALPQLARLS 103
Query: 304 LELQPIRNQSNLNK 317
L ++ Q +L
Sbjct: 104 DLLGRMKRQQSLLA 117
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 31.0 bits (71), Expect = 0.53
Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 11/77 (14%)
Query: 239 EIAAREKAEKKHQESVERLKQL------EVEMAKRDQDLMEAQEMI---RRLEEQLKQLQ 289
EI + + + + RL+ E+ ++ + E++ R + +++ +L+
Sbjct: 32 EILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGE--PVDELLAKSREIVKRIGELE 89
Query: 290 AAKEELEARQTELQLEL 306
EEL+ + L
Sbjct: 90 NEVEELKKKIDYYLWRL 106
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain
binding, HIP1 coiled-coil domain, endocytosis, clathrin
SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Length = 107
Score = 29.5 bits (65), Expect = 0.54
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 243 REKAEKKHQESVERLKQLEVEMAKR---DQDLMEAQEMIRRLEEQLKQLQAAKEELEARQ 299
R+ AE Q S+ R Q+++E K+ D + + R+ +EQL+ L++ K+EL Q
Sbjct: 8 RKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQ 67
Query: 300 TELQ 303
ELQ
Sbjct: 68 RELQ 71
Score = 28.3 bits (62), Expect = 1.2
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 3/105 (2%)
Query: 199 GNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLK 258
G+H +R+ T V + + + K++ D L+ ++ ++ E +E LK
Sbjct: 1 GSHADLLRKNAEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLK 60
Query: 259 QLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
Q E+A ++L Q + + A ELE + L
Sbjct: 61 Q---ELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum
biogenesis, chaper cytoplasm, repressor, transcription;
3.20A {Salmonella typhimurium}
Length = 122
Score = 29.6 bits (66), Expect = 0.60
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRL---EEQLKQLQAAKEELEARQTELQ 303
E + +S+E + + + I++ E+ LK L L+ R EL
Sbjct: 37 EVSYLQSIETVMEKQTPPGITRSIQDMVAGYIKQTLDNEQLLKGL------LQQRLDELS 90
Query: 304 LELQPIRNQSNLNK 317
+ Q +LN
Sbjct: 91 SLIGQSTRQKSLNN 104
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.1 bits (69), Expect = 0.60
Identities = 17/101 (16%), Positives = 42/101 (41%), Gaps = 2/101 (1%)
Query: 204 YMRRRKPDTI--DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLE 261
RR T ++ + Q E++ K + RE +++ + + V R +L+
Sbjct: 588 QARRELVKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELD 647
Query: 262 VEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTEL 302
+ ++ + + RL+ + + A +++EA + L
Sbjct: 648 NLVKQKQTREINRESEFNRLKNLQEDVIAQLQKIEAAYSNL 688
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling,
TRAF, adapter protein, cell surviVal; 2.30A {Homo
sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Length = 192
Score = 30.4 bits (68), Expect = 0.61
Identities = 6/39 (15%), Positives = 19/39 (48%)
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQS 313
Q+ I L +++QL+ + + +L+ ++ + +
Sbjct: 2 QDKIEALSSKVQQLERSIGLKDLAMADLEQKVLEMEAST 40
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 30.6 bits (70), Expect = 0.66
Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 239 EIAAREKAEKKHQESVERLKQL------EVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAK 292
+ A ++ ++ ++ ++ ++ V A ++ + L E+ K+L+ A
Sbjct: 29 ALLALDREVQELKKRLQEVQTERNQVAKRVPKAPP-EEKEALIARGKALGEEAKRLEEAL 87
Query: 293 EELEARQTELQLEL 306
E EAR L L++
Sbjct: 88 REKEARLEALLLQV 101
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding
protein, COA binding protein, lipid binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 109
Score = 29.2 bits (65), Expect = 0.68
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 27 WKEHKGMLREDAMMEYLKIAQDL 49
WK AM EY+ + + L
Sbjct: 65 WKALGDSSPSQAMQEYIAVVKKL 87
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 30.6 bits (70), Expect = 0.71
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 15/58 (25%)
Query: 130 SRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIK---PIDKKAPDFVFFA 184
G + + W E +I + I D K D V A
Sbjct: 39 PSKIGKKYKD------------AVKWIEQGDIPEEVQDLPIVSTNYEDHKDVDVVLSA 84
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein
structure initiative, MC midwest center for structural
genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica
subsp}
Length = 123
Score = 29.2 bits (65), Expect = 0.72
Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 247 EKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRL---EEQLKQLQAAKEELEARQTELQ 303
E + ++VE + + +E +R + E ++K+L L+ R L
Sbjct: 40 EMTYLKAVESTANITISSCSSLMLQDLLREKLRAILDNEIEIKRL------LQLRLDRLS 93
Query: 304 LELQPIRNQSNLNK 317
+ Q +N
Sbjct: 94 DLVGQSTKQQAVNN 107
>2bb3_A Cobalamin biosynthesis precorrin-6Y methylase (CB; beta,
alpha-beta-alpha sandwich, structural genomics, PSI, P
structure initiative; HET: SAH; 2.27A {Archaeoglobus
fulgidus} SCOP: c.90.1.1
Length = 221
Score = 30.1 bits (68), Expect = 0.72
Identities = 7/67 (10%), Positives = 20/67 (29%), Gaps = 14/67 (20%)
Query: 133 AGSRVRFPPGPNC--LLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVN 190
++ P + + ++ SE+ + + + DF +
Sbjct: 113 EDVEIKIEPAISSVQVALARLKVDLSEVAVVDCHAK------------DFDAELTELLKY 160
Query: 191 KRILALC 197
+ +L L
Sbjct: 161 RHLLILA 167
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid
metabolism, lipid binding protein; HET: MES; 1.61A
{Moniliophthora perniciosa}
Length = 106
Score = 28.8 bits (64), Expect = 0.82
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 27 WKEHKGMLREDAMMEYLKIAQDL 49
WK +G +E A +Y++ ++
Sbjct: 65 WKSVEGTSKEVAYQKYVEKLLEI 87
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 30.2 bits (68), Expect = 0.86
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 244 EKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
+ +K Q+ +E ++ L +++ + Q+++L + T LQ
Sbjct: 1 DSGQKTVQKILEEVRIL--------------EQIGVSHDAQIQELSEMWRVNQQFVTRLQ 46
Query: 304 LELQPIRNQ 312
+L IR
Sbjct: 47 QQLVDIRQT 55
Score = 29.8 bits (67), Expect = 1.3
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 266 KRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
+ + + E +R LE+ A +EL Q + ++ Q
Sbjct: 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLV 50
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 30.2 bits (67), Expect = 0.89
Identities = 14/72 (19%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 243 REKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTEL 302
+E + H E+ R ++L+ K + + M +++ E +L+++Q E + Q ++
Sbjct: 288 QEVTQDLHYEN-FRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQ---EMIARMQAQM 343
Query: 303 QLELQPIRNQSN 314
Q+++Q
Sbjct: 344 QMQMQGGDGDGG 355
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia
coli} PDB: 2wz7_A
Length = 83
Score = 28.4 bits (63), Expect = 0.91
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 255 ERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEE-------LEARQTELQLELQ 307
+R+ QLE Q L + Q+ + + + L+ +E + RQ ++ L++
Sbjct: 6 DRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65
Query: 308 PIRNQSN 314
+ +
Sbjct: 66 SLSSGGA 72
>2b3t_B RF-1, peptide chain release factor 1; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: e.38.1.1
Length = 360
Score = 30.2 bits (69), Expect = 0.93
Identities = 15/68 (22%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 242 AREKAE-KKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQT 300
+RE A+ +Q++ ++ Q +++ EM +++L++ + E+LE
Sbjct: 39 SREYAQLSDVSRCFTDWQQVQEDIET-AQMMLDDPEMREMAQDELREAKEKSEQLEQ--- 94
Query: 301 ELQLELQP 308
+LQ+ L P
Sbjct: 95 QLQVLLLP 102
>2rm8_A Sensory rhodopsin II transducer; protein, chemotaxis, chromophore,
membrane, methylation, photoreceptor protein, receptor;
NMR {Natronomonas pharaonis}
Length = 68
Score = 28.0 bits (62), Expect = 0.97
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 276 EMIRRLEEQLKQLQAAKEELEARQTELQ 303
EM + + L+ + A+E+ E Q +
Sbjct: 27 EMRQSVRTSLEDAKNAREDAEQAQKRAE 54
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 29.2 bits (65), Expect = 1.0
Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 212 TIDVQQMKAQAREEKNAKQQQ--RDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQ 269
+++ Q K +E+K ++ + DKL+ E AE+ + + + LE E+ +
Sbjct: 60 SLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL 119
Query: 270 DLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
E +++LE+++++L + LE L+
Sbjct: 120 KYKAISEEMKQLEDKVEELLSKNYHLENEVARLK 153
Score = 28.8 bits (64), Expect = 1.6
Identities = 14/119 (11%), Positives = 50/119 (42%)
Query: 194 LALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQES 253
+A E R + +++ + + N + + + +K E++ +
Sbjct: 23 VARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVL 82
Query: 254 VERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
++LK+ E ++ + + ++ I LE++L + + + +L+ +++ + ++
Sbjct: 83 SDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSK 141
Score = 28.8 bits (64), Expect = 1.6
Identities = 17/105 (16%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLM-- 272
++Q++ + E + +++ E+AE++ + S + +LE E+ +L
Sbjct: 2 MKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKSL 61
Query: 273 -----EAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
+ + + EE++K L +E E R + + +
Sbjct: 62 EAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKS 106
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein,
ribosomal protein, RNA-binding, binding, metal-binding,
zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y
3d5c_X 3mr8_V 3ms0_V
Length = 354
Score = 29.8 bits (68), Expect = 1.1
Identities = 15/68 (22%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 242 AREKAE-KKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQT 300
+R AE + + +++ ++ + + L++ E+ + + + L A KE LE
Sbjct: 35 SRRYAEMGEVIGLIREYRKVLEDLEQ-AESLLDDPELKEMAKAEREALLARKEALEK--- 90
Query: 301 ELQLELQP 308
EL+ L P
Sbjct: 91 ELERHLLP 98
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding,
structural genomics, struct genomics consortium, SGC,
lipid-binding, membrane; HET: STE COA; 1.70A {Homo
sapiens}
Length = 119
Score = 28.9 bits (64), Expect = 1.1
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 27 WKEHKGMLREDAMMEYLKIAQDL-EMYGVNY 56
W M +E+AM+ Y++ + + E +
Sbjct: 85 WSSLGDMTKEEAMIAYVEEMKKIIETMPMTE 115
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium,
contractIle protein; HET: DR6; 3.00A {Gallus gallus}
SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Length = 107
Score = 28.3 bits (63), Expect = 1.2
Identities = 21/95 (22%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 220 AQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIR 279
A+A +++ KQ R E K + ER K L ++ D+ ++ +
Sbjct: 10 AKADQKRGKKQTAR-------------ETKKKVLAERRKPLNIDHLNEDK----LRDKAK 52
Query: 280 RLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
L + L QLQ K + + + E+ +RN+ +
Sbjct: 53 ELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRID 87
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 28.6 bits (65), Expect = 1.2
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 12/80 (15%)
Query: 221 QAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVER-LKQLEVEMAKRDQDLMEAQEMIR 279
+ E + + +L+ EI KK +++ + E + + L +A+ +
Sbjct: 33 NTKHEISEMNRMIQRLRAEI----DNVKKQCANLQNAIADAE---QRGELALKDARNKLA 85
Query: 280 RLEEQLKQLQAAKEELEARQ 299
LEE L++ AK+++ AR
Sbjct: 86 ELEEALQK---AKQDM-ARL 101
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.5 bits (65), Expect = 1.3
Identities = 9/72 (12%), Positives = 26/72 (36%)
Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
Q + E K ++ + +L+ + + + K LE ++ + + + +
Sbjct: 91 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK 150
Query: 276 EMIRRLEEQLKQ 287
R ++ Q
Sbjct: 151 INNRIADKAFYQ 162
Score = 28.0 bits (61), Expect = 3.4
Identities = 12/76 (15%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 220 AQAREEKNAKQQQRDKLQLEIAAREKAE-KKHQESVERLKQLEVEMAKRDQDLMEAQEMI 278
+ +E + ++ R++ + + + A QE E+ K+ E +R + +E ++
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 152
Query: 279 RRLEEQLKQLQAAKEE 294
R+ + K +
Sbjct: 153 NRIAD--KAFYQQPDA 166
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal
transduction, photocycle ST membrane protein; HET: BOG
RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Length = 163
Score = 28.8 bits (64), Expect = 1.5
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 251 QESVERLKQ--LEVEMAKRDQD----LMEA-QEMIRRLEEQLKQLQAAKEELEARQTELQ 303
R+ L+VE+ R +D L A EM + + L+ + A+E+ E Q +
Sbjct: 91 AAKASRMGDGDLDVELETRREDEIGDLYAAFDEMRQSVRTSLEDAKNAREDAEQAQKRAE 150
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 29.6 bits (67), Expect = 1.5
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 17/106 (16%)
Query: 211 DTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQ-ES-VERLK-QLEVEMAKR 267
D + ++ + + Q DKL E ++K+ E + L+ +LE E A
Sbjct: 525 DAKKLNELIEKE--NEMLAQ---DKLV-----AETEDRKNTLEEYIYTLRGKLEEEYAPF 574
Query: 268 --DQDLMEAQEMIRRLEEQLKQ--LQAAKEELEARQTELQLELQPI 309
D + + Q M+ + EE L + K + A+ EL I
Sbjct: 575 ASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNII 620
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding
protein, EF- hand, coiled-coil, contractIle protein;
2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Length = 106
Score = 27.7 bits (61), Expect = 1.9
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 17/98 (17%)
Query: 217 QMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQE 276
Q +AQ + +Q +R EKK + ER K L ++ DQ +E
Sbjct: 7 QKQAQTERKSGKRQTER-------------EKKKKILAERRKVLAIDHLNEDQ----LRE 49
Query: 277 MIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
+ L + + L+A K +L+ + + + E+ +RN+ N
Sbjct: 50 KAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRIN 87
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF),
nucleus, coiled coil, structural genomics consortium,
SGC, structural protein; 2.40A {Homo sapiens} PDB:
3tyy_A
Length = 95
Score = 27.6 bits (62), Expect = 2.0
Identities = 8/68 (11%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 236 LQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEEL 295
L + K+ + +ER+++LE ++ ++ M+ E ++ + ++++
Sbjct: 11 ENLYFQGQ----KESRACLERIQELE---DLLAKEKDNSRRMLTDKEREMAE---IRDQM 60
Query: 296 EARQTELQ 303
+ + + +
Sbjct: 61 QQQLNDYE 68
>1r8i_A TRAC; VIRB5, helical bundle, structural protein; 3.00A {Escherichia
coli} SCOP: a.8.7.1
Length = 213
Score = 28.6 bits (63), Expect = 2.1
Identities = 15/124 (12%), Positives = 37/124 (29%), Gaps = 2/124 (1%)
Query: 191 KRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKH 250
K + + M + + + + R AEK +
Sbjct: 67 KEVYSDAMNSSSSVTPSVNSMMGQFNAEVDDMTPSEAIAYMNKKLAEKGAYDRVMAEKAY 126
Query: 251 QESVERLKQLEVEMAKRD--QDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP 308
++ L ++ + DL ++ R++ +Q + +L Q + +
Sbjct: 127 NNQMQELSDMQALTEQIKSTPDLKSIADLQARIQTSQGAIQGEQAKLNLMNMLQQSQDKL 186
Query: 309 IRNQ 312
+R Q
Sbjct: 187 LRAQ 190
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4
chimera; alpha-helical coiled coil, disorder, salt
links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB:
1nkn_A 3bat_A
Length = 89
Score = 27.2 bits (60), Expect = 2.2
Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 220 AQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIR 279
A+ EE + +Q DK++ ++A K E+ +E E+ L + + + ++ +
Sbjct: 10 ARQEEEMKEQLKQMDKMKEDLA---KTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVE 66
Query: 280 RLEEQLKQLQAAKEELEARQTE 301
L + L+ L+ E
Sbjct: 67 ELLSKNYHLENEVARLKKLVGE 88
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 28.8 bits (65), Expect = 2.3
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 16/59 (27%)
Query: 130 SRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKA----PDFVFFA 184
SRSAG + + W + + ++ +++ + D VF
Sbjct: 54 SRSAGKKYKD------------AASWKQTETLPETEQDIVVQECKPEGNFLECDVVFSG 100
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 28.5 bits (64), Expect = 2.5
Identities = 14/93 (15%), Positives = 33/93 (35%)
Query: 218 MKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEM 277
M+ ++ + + I + + + L++ E A + E
Sbjct: 1 MEQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEE 60
Query: 278 IRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310
+ + Q+ +L+A E+E R L + + R
Sbjct: 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFENFR 93
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor
1 (RF-1), structural joint center for structural
genomics, JCSG; 2.34A {Streptococcus mutans}
Length = 371
Score = 28.7 bits (65), Expect = 2.5
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 20/100 (20%)
Query: 210 PDTI-DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRD 268
PD + D ++ +REE N++ E A + K+ +++ + EM K
Sbjct: 36 PDVVSDTKRFMELSREEANSR---------ETVAVYREYKQVVQNIADAQ----EMIKDA 82
Query: 269 QDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQP 308
E +EM +E+LK + AKEE E +L+ L P
Sbjct: 83 SGDPELEEM---AKEELKNSKVAKEEYEE---KLRFLLLP 116
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 27.7 bits (62), Expect = 2.6
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 265 AKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311
+ +L E ++ E++ ++ +A K ++ L++EL RN
Sbjct: 76 VSVNLELTAE-EWKKKYEKEKEKNKALKSVIQ----HLEVELNRWRN 117
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative
splicing, cell membrane, coiled coil, cytoplasm,
cytoskeleton, endocytosis; NMR {Homo sapiens}
Length = 98
Score = 27.2 bits (60), Expect = 2.8
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 230 QQQRDKLQLEIAAREKA---EKKHQESVERLKQLEVE------MAKRDQDLMEAQEMIRR 280
+QQR +LQ ++ R + E +E+++++K + + A + + E I R
Sbjct: 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIER 73
Query: 281 LEEQLKQLQAAKEELEARQ 299
L+ ++++ +A E E+R
Sbjct: 74 LKLEVQKYEAWLAEAESRV 92
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 28.6 bits (64), Expect = 2.9
Identities = 4/42 (9%), Positives = 15/42 (35%)
Query: 273 EAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
+ E I + E + ++ L+ ++ ++ +
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVA 42
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal
toxic shock S; 3.30A {Streptococcus pyogenes}
Length = 146
Score = 27.9 bits (61), Expect = 2.9
Identities = 9/99 (9%), Positives = 35/99 (35%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
++++ K + + + E+ +K + ++++ Q +++L
Sbjct: 11 ELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNRANVLEKELEA 70
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
L + ++L + + +L +E + +
Sbjct: 71 ITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEE 109
Score = 26.4 bits (57), Expect = 8.8
Identities = 14/93 (15%), Positives = 34/93 (36%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
Q +A + + + ++ A+ + + +QL +E AK +++ +
Sbjct: 54 ASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQIS 113
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+ L L + AK+++E E
Sbjct: 114 DASRQSLRRDLDASREAKKQVEKDLLEHHHHHH 146
>2rqf_A HJHBP, hemolymph juvenIle hormone binding protein; HET: JH3; NMR
{Bombyx mori} PDB: 3a1z_A 3aos_A* 3aot_A*
Length = 227
Score = 28.1 bits (62), Expect = 3.2
Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 53 GVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPEDV 112
GV +FE++ + T +G + L+ + + ++ + R + +
Sbjct: 140 GVQHFEVQPETFTCESIGEPKITLSSDLSSALEKDSGNNSLEPDMEPLKTLRQAAICK-I 198
Query: 113 VEEIIQDITLRLFYL 127
E + +
Sbjct: 199 AEACYISVVHNIRAS 213
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative
splicing, fatty acid metabolism, lipid transport, lipid
binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Length = 106
Score = 27.3 bits (60), Expect = 3.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 27 WKEHKGMLREDAMMEYLKIAQDL 49
W M RE+AM Y+ + +
Sbjct: 69 WNSLGKMSREEAMSAYITEMKLV 91
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 27.5 bits (62), Expect = 3.4
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 221 QAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVER-LKQLEVEMAKRDQDLMEAQEMIR 279
+ E + ++ L++E+ ++ + S+E L++ + + L + QEMI
Sbjct: 35 SGKSEISELRRTMQNLEIELQSQ----LSMKASLENSLEETK---GRYCMQLAQIQEMIG 87
Query: 280 RLEEQLKQLQAAKEELEARQTELQ 303
+EEQL Q + E+E + E +
Sbjct: 88 SVEEQLAQ---LRCEMEQQNQEYK 108
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 28.7 bits (63), Expect = 3.5
Identities = 15/118 (12%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 187 VRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKA 246
+ ++ + + H TI Q++ + + ++ L E A +++
Sbjct: 545 LGIHNEVSKIVQTYHVNMAGTNPYTTITPQEINGKWEHVRQLVPRRDQALMEEHARQQQN 604
Query: 247 EKKHQESVERLKQLEVEMAKRDQDL-MEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
E+ ++ + + + + +++ + EM LE+QL L+ ++ + + ++
Sbjct: 605 ERLRKQFGAQANVIGPWIQTKMEEIGRISIEMHGTLEDQLNHLRQYEKSIVNYKPKID 662
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator
protein; C-DI-GMP, ggdef, leucine zipper, signaling
protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1}
PDB: 3i5b_A*
Length = 206
Score = 27.9 bits (63), Expect = 3.5
Identities = 6/26 (23%), Positives = 16/26 (61%)
Query: 278 IRRLEEQLKQLQAAKEELEARQTELQ 303
+++LE+++++L + LE L+
Sbjct: 2 MKQLEDKVEELLSKNYHLENEVARLK 27
Score = 26.7 bits (60), Expect = 8.6
Identities = 3/27 (11%), Positives = 11/27 (40%)
Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEA 297
+ + ++ + L + L+ L+
Sbjct: 2 MKQLEDKVEELLSKNYHLENEVARLKK 28
>2wad_A Penicillin-binding protein 2B; peptidoglycan synthesis, transme
antibiotic resistance, cell shape, peptidoglycan; 2.18A
{Streptococcus pneumoniae} PDB: 2wae_A 2waf_A
Length = 680
Score = 28.3 bits (63), Expect = 3.7
Identities = 18/172 (10%), Positives = 36/172 (20%), Gaps = 21/172 (12%)
Query: 120 ITLRLFYLQV-------SRSAGSRVRFPPGPNCLLTPKIGFPWSEIRNISFNDRKFIIKP 172
I RL Y+QV + A + G EI D
Sbjct: 27 IIGRLLYMQVLNKDFYEKKLASASQTKVTTS-----SARG----EIY-----DASGKPLV 72
Query: 173 IDKKAPDFVFFAPRVRVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQ 232
+ F + + T A E K +
Sbjct: 73 ENTLKQVVSFTRSNKMTATDLKEIAKKLLTYVSISSPNLTERQLADYYLADPEIYKKTVE 132
Query: 233 RDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQ 284
+ + + + + + + +D + + +L
Sbjct: 133 ALPSEKRLDSDGNRLSESELYNNAVDSVPTSQLNYTEDEKKEIYLFSQLNAV 184
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 28.3 bits (62), Expect = 3.8
Identities = 12/116 (10%), Positives = 46/116 (39%), Gaps = 1/116 (0%)
Query: 189 VNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEK 248
+ + + + T+ + +++ + + K + LQ E+A + E+
Sbjct: 308 IQNEVEKVIQSYNIRISSSNPYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANER 367
Query: 249 KHQESVERLKQLEVEMAKRDQDLMEAQ-EMIRRLEEQLKQLQAAKEELEARQTELQ 303
++ + + + + +++ + ++ LE+Q+ QL+ + + + +
Sbjct: 368 LRRQFAAQANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNID 423
Score = 27.5 bits (60), Expect = 6.7
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 1/93 (1%)
Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVE-RLKQLEVEMAKRDQDLMEA 274
+++ + + E N Q A +E K + ++LE ++ L+
Sbjct: 63 PKVQEKCQLEINFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNE 122
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+ RLE ++ + E + L
Sbjct: 123 IRRLERLEHLAEKFRQKASTHETWAYGKEQILL 155
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor,
acetylation, DNA-binding, isopeptide bond, nucleus;
2.80A {Mus musculus}
Length = 107
Score = 26.9 bits (59), Expect = 3.9
Identities = 17/88 (19%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
Q ++ ++EE +Q+R L+ A K+ V + ++LE + A+ Q++ +
Sbjct: 23 QHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKR----VTQKEELEKQKAELQQEVEKLA 78
Query: 276 EMIRRLEEQLKQLQAAKEELEARQTELQ 303
++ +L L++ E L+ +
Sbjct: 79 SENASMKLELDALRSKYEALQNFARTVA 106
Score = 26.2 bits (57), Expect = 6.8
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 2/88 (2%)
Query: 202 ELYMRRRKPDTIDVQQMKAQAREEKN--AKQQQRDKLQLEIAAREKAEKKHQESVERLKQ 259
EL R ++ Q+K + R KN R K + EK + + Q+ VE+L
Sbjct: 20 ELNQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLAS 79
Query: 260 LEVEMAKRDQDLMEAQEMIRRLEEQLKQ 287
M L E ++ + +
Sbjct: 80 ENASMKLELDALRSKYEALQNFARTVAR 107
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump,
subunit I/A, V-ATPase, proton; HET: NHE; 2.64A
{Meiothermus ruber}
Length = 357
Score = 28.2 bits (62), Expect = 3.9
Identities = 15/96 (15%), Positives = 35/96 (36%), Gaps = 6/96 (6%)
Query: 222 AREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRL 281
R ++ + + + E+ E + ++S+ + V +K +E
Sbjct: 44 LRPDELGEYRLSPTEEAELKRWEAVVSQAEQSLTVVGLATVPSSKPFTGSLE------EA 97
Query: 282 EEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNK 317
E L+ + + E L + L+ E+Q I +
Sbjct: 98 EAVLRPVASRAEVLGKERAALEEEIQTIELFGKAAE 133
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K,
phosphoinositide-3-kinase, influenza virus, NS1; 2.30A
{Bos taurus} PDB: 2v1y_B
Length = 170
Score = 27.8 bits (61), Expect = 3.9
Identities = 17/102 (16%), Positives = 42/102 (41%)
Query: 211 DTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQD 270
+ Q+ ++ E+ ++ ++Q + E+ + + E E +LE E+ + D
Sbjct: 66 EQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQELRAQASD 125
Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
E + + L+ L QL+ +++ T+ + I
Sbjct: 126 NREIDKRMNSLKPDLMQLRKIRDQYLVWLTQKGARQKKINEW 167
Score = 27.4 bits (60), Expect = 4.4
Identities = 13/100 (13%), Positives = 45/100 (45%)
Query: 213 IDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLM 272
+ +++ +A E +++ + Q + + + + + + ++++ + + +
Sbjct: 47 LQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERLKSRIA 106
Query: 273 EAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
E E +LE++L+ + E++ R L+ +L +R
Sbjct: 107 EIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQLRKI 146
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis
thaliana}
Length = 116
Score = 26.8 bits (59), Expect = 4.0
Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 201 HELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQL 260
Y + + + MK + + + K QQ + L K+ + ++ LK
Sbjct: 24 LHSYEKEVEREAAKTADMKDKGADPYDLK-QQENVLGESRMMIPDCHKRLESALADLKST 82
Query: 261 EVEMAKRD----QDLMEAQEMIRRLEEQLKQLQA 290
E+ + D ++ +A++ + +E+Q A
Sbjct: 83 LAELEETDEKEGPEIEDAKKTVADVEKQFPTEDA 116
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 27.8 bits (61), Expect = 4.0
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 2/99 (2%)
Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
+ + + + DK E +E QE V+ +K L + A+ Q L E Q
Sbjct: 142 KLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEKQ 201
Query: 276 EMIRR--LEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
R E++ + Q A E E + L +E+Q +
Sbjct: 202 AENLRAIQEKEGQLQQEAVAEYEEKLKTLTVEVQEMVKN 240
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase,
hypertherm protein, replication; HET: DNA BOG; 1.50A
{Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB:
1d2m_A*
Length = 664
Score = 28.3 bits (64), Expect = 4.0
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 233 RDKLQLEIAAREKAEKK--HQESVERLKQLEVEMAKRDQDL-----MEAQEMIRRLEEQL 285
R ++ E E ++ ER+ +LE+ M + + L ++ IR LE +L
Sbjct: 587 RAVIRPEGYEEAPLEADLSGEDLRERIAELELAMWQAAEALDFERAARLRDEIRALEARL 646
Query: 286 KQLQAAKEELEARQTE 301
+ ++A + R+ +
Sbjct: 647 QGVRAPEPVPGGRKRK 662
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 28.3 bits (62), Expect = 4.4
Identities = 10/57 (17%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+V KQ +E Q L + ++ ++ LE+++K ++ +++ + L+ +
Sbjct: 7 TAAVVTEKQQMLE-----QHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGD 58
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase;
transcription hydrolase complex, nucleotide-binding;
2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Length = 109
Score = 26.7 bits (59), Expect = 4.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Query: 279 RRLEEQLKQLQAAKEELEARQTELQLELQPIR 310
++KQL+ EEL ++ L+ E+ +R
Sbjct: 3 HHHHHRMKQLEDKVEELLSKNYHLENEVARLR 34
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil,
heptad repeat, stutter; 2.3A {Homo sapiens} SCOP:
h.1.20.1
Length = 84
Score = 25.9 bits (58), Expect = 5.1
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 248 KKHQESVER-LKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
K ES+ER ++++E + Q+ I RL+++++ KEE+ E Q
Sbjct: 7 KGTNESLERQMREME---ENFAVEAANYQDTIGRLQDEIQN---MKEEMARHLREYQ 57
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2,
structure initiative, northeast structural genomics
consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP:
b.40.4.5 b.40.4.16 PDB: 2r7f_A
Length = 469
Score = 28.0 bits (63), Expect = 5.2
Identities = 10/55 (18%), Positives = 17/55 (30%)
Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLE 261
RR D + QQ++A + E A ++ + R L
Sbjct: 343 RRYLDLVVHQQLRAFLAGRDPLSSKVMAAHIAESQMNADATRQAERLSRRHHTLR 397
>3p01_A Two-component response regulator; PSI-2, midwest center for
structural genomics, protein struc initiative, MCSG,
signali protein; 2.65A {Nostoc SP}
Length = 184
Score = 27.2 bits (61), Expect = 6.0
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQL 304
+ +++R E L+ EEL ++ L
Sbjct: 1 SNAVVQRAAETYDLLKQRTEELRRANAQMSL 31
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T
3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 1s1i_P
Length = 189
Score = 27.0 bits (59), Expect = 6.3
Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 8/99 (8%)
Query: 178 PDFVFFAPRVRVNKRILA--------LCMGNHELYMRRRKPDTIDVQQMKAQAREEKNAK 229
P V + R+RV +R+LA H LY + + + + K
Sbjct: 90 PSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADA 149
Query: 230 QQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRD 268
Q+++ + A R K +R+ + + K D
Sbjct: 150 QREKALNEEAEARRLKNRAARDRRAQRVAEKRDALLKED 188
>1vqq_A Saupbp2A, penicillin-binding protein MECA, low-affinity;
beta-lactam, D- transpeptidase, D-carboxypeptidase,
biosynthetic protein; 1.80A {Staphylococcus aureus}
SCOP: d.17.4.5 d.175.1.1 e.3.1.1 PDB: 1mwu_A* 1mwr_A
1mws_A* 1mwt_A*
Length = 646
Score = 27.7 bits (62), Expect = 6.3
Identities = 7/114 (6%), Positives = 31/114 (27%), Gaps = 19/114 (16%)
Query: 37 DAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKE 96
+ + G + K ++ + +NI +++ + + K +
Sbjct: 21 KQVYKDSS-YISKSDNGEVEMTERPIK---IYNSLGVKDINIQDRK------IKKVSKNK 70
Query: 97 NPLQFKFRAKFYPEDVVEEIIQDITL--RLFYLQV-------SRSAGSRVRFPP 141
+ +++ K ++ + + ++ L +
Sbjct: 71 KRVDAQYKIKTNYGNIDRNVQFNFVKEDGMWKLDWDHSVIIPGMQKDQSIHIEN 124
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris,
coiled-coil, structur genomics, PSI-2, protein structure
initiative; 2.00A {Xanthomonas campestris PV}
Length = 78
Score = 25.5 bits (56), Expect = 6.9
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 243 REKAEKKHQESVERLKQLEVEMAKRD-------QDLMEAQEMIRRLEEQLKQLQAAKEEL 295
E+ + QE RL +LE ++ ++ + L +A+ R E ++ L ++
Sbjct: 2 HEQLSPRDQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61
Query: 296 EARQTELQLE 305
+ +
Sbjct: 62 RSTLFADAAD 71
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 27.2 bits (59), Expect = 7.1
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 3/90 (3%)
Query: 201 HELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQL 260
++ + + D + E + + K++ A + EKK + +L
Sbjct: 300 SQIVLHKNGTDPDFKCRHLQIDIERLVDQMIDKTKVEKSEAKATELEKKLDSELTARHEL 359
Query: 261 EVEMAKRDQDLMEAQEMIRRLEEQLKQLQA 290
+VEM K + D ++ ++ L+ + L +
Sbjct: 360 QVEMKKMENDF---EQKLQDLQGEKDALDS 386
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol
3-phosphate binding, membrane protein; HET: ITP; 2.20A
{Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A*
1hyj_A
Length = 125
Score = 26.5 bits (58), Expect = 7.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLEL 306
Q+ R L E+ + + E+L+ + ELQ +L
Sbjct: 3 QDERRALLERCLKGEGEIEKLQTKVLELQRKL 34
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 27.5 bits (60), Expect = 7.6
Identities = 18/127 (14%), Positives = 50/127 (39%), Gaps = 14/127 (11%)
Query: 205 MRRRKPDTIDVQQMKAQAREEKNAKQQ------QRDKLQLEIAAREKAEKKHQESVERLK 258
+R+R+ +V++ KN + Q+D++ I + + + LK
Sbjct: 363 LRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLK 422
Query: 259 QLEVEMAKRDQDLMEAQEMIRRLEEQLK--------QLQAAKEELEARQTELQLELQPIR 310
++ E++ + + + + + + ++ K + + + L+ +L + + I
Sbjct: 423 GIKRELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWIS 482
Query: 311 NQSNLNK 317
NLN
Sbjct: 483 KVENLNA 489
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 27.1 bits (59), Expect = 7.9
Identities = 12/101 (11%), Positives = 39/101 (38%), Gaps = 6/101 (5%)
Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
+++ + +AQ + + ++ + + +A + ER ++ E
Sbjct: 125 QKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQA 184
Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+ AQE + +++ A +++LE + + ++
Sbjct: 185 K------AQEAEALYQACVREANARQQDLEIAKQRIVSHVR 219
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 26.9 bits (59), Expect = 8.1
Identities = 12/99 (12%), Positives = 39/99 (39%), Gaps = 8/99 (8%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
+ + + +E K + + AR++AEK +E+ + + +
Sbjct: 3 GAELIIQEINKEAERKIE-----YILNEARQQAEKIKEEARRNAEA---KAEWIIRRAKT 54
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
E+ ++ +L+ ++ L ++ + L+ ++ +
Sbjct: 55 QAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRR 93
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear
pore complex, central TRAN channel, alpha helical
proteins, triple helix; 2.80A {Rattus norvegicus}
Length = 64
Score = 25.1 bits (55), Expect = 8.4
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 268 DQDLMEAQEMIRRLEEQLKQLQAAKEEL-------EARQTELQLELQP 308
D+ L+E E I L ++++++ ++ L ++Q EL+ L P
Sbjct: 4 DRTLIENGEKITSLHREVEKVKLDQKRLDQELDFILSQQKELEDLLSP 51
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural
genomics, midwe for structural genomics, protein
structure initiative, TRAN; HET: MSE; 1.80A {Shewanella
SP}
Length = 119
Score = 26.2 bits (58), Expect = 8.5
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSN 314
Q + + +E LK+ Q E+LE EL EL + +
Sbjct: 72 QRLCQEIESALKR-QTPVEDLEPEILELLDELTKVESAVK 110
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break
repair, V(D)J recombination, protein-protein complex,
coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP:
b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Length = 213
Score = 26.7 bits (58), Expect = 8.6
Identities = 5/45 (11%), Positives = 20/45 (44%)
Query: 253 SVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA 297
+++ + + + + ++ ++ + ++ +AKE LE
Sbjct: 130 ALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALET 174
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 27.2 bits (59), Expect = 8.6
Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 219 KAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMI 278
KA A + + K Q ++ + + ++ VE+ + + + MEA+
Sbjct: 598 KAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNK----MEAKAQA 653
Query: 279 RRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
++++ L + +AR L+ I+ +
Sbjct: 654 NSQKDEIFALINKEANRDARAIAYTQNLKGIKRE 687
>1cl8_A Protein (endonuclease); endonuclease/DNA, DNA base analog,
protein/DNA complex; HET: DNA PRN; 1.80A {Escherichia
coli} SCOP: c.52.1.1 PDB: 1ckq_A* 1eri_A* 1qc9_A 2oxv_A*
1qps_A 1qrh_A 1qri_A
Length = 276
Score = 27.1 bits (59), Expect = 8.6
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 246 AEKKHQ-ESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQA 290
AE KHQ + + ++ + + DQDLM A I R + + ++
Sbjct: 109 AEAKHQGKDIINIRNGLLVGKRGDQDLMAAGNAIERSHKNISEIAN 154
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo sapiens}
SCOP: h.1.3.1
Length = 61
Score = 25.0 bits (55), Expect = 9.4
Identities = 7/38 (18%), Positives = 21/38 (55%)
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
+ ++ LE++ + L + +L++ T L+ E+ ++
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein;
unknown function; 2.60A {Mycobacterium tuberculosis}
Length = 351
Score = 27.0 bits (59), Expect = 10.0
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 236 LQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEEL 295
LQL +A +A + Q ++ E + ++ +++ LE Q A+E
Sbjct: 267 LQLPLAVLAEAAAEVQAKID-------EQVQASAEV---AQVVAALERQYDAFIDAQENR 316
Query: 296 EARQTELQL 304
+ L
Sbjct: 317 SLLTRDEDL 325
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.377
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,843,740
Number of extensions: 300391
Number of successful extensions: 2123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1846
Number of HSP's successfully gapped: 523
Length of query: 318
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 224
Effective length of database: 4,077,219
Effective search space: 913297056
Effective search space used: 913297056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.7 bits)