RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3983
(318 letters)
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 89.9 bits (223), Expect = 2e-23
Identities = 60/67 (89%), Positives = 65/67 (97%)
Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
N LTPKIGFPWSEIRNISFND+KF+IKPIDKKAPDFVF+APR+R+NKRILALCMGNHEL
Sbjct: 33 NDRLTPKIGFPWSEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHEL 92
Query: 204 YMRRRKP 210
YMRRRKP
Sbjct: 93 YMRRRKP 99
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 99
Score = 86.0 bits (213), Expect = 9e-22
Identities = 41/66 (62%), Positives = 53/66 (80%)
Query: 144 NCLLTPKIGFPWSEIRNISFNDRKFIIKPIDKKAPDFVFFAPRVRVNKRILALCMGNHEL 203
LTPKI FPW+EIRNIS++D++F IKP+DKK F F + ++RVNK IL LC+GNH+L
Sbjct: 33 ENRLTPKISFPWNEIRNISYSDKEFTIKPLDKKIDVFKFNSSKLRVNKLILQLCIGNHDL 92
Query: 204 YMRRRK 209
+MRRRK
Sbjct: 93 FMRRRK 98
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 60.6 bits (147), Expect = 1e-12
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 153 FPWSEIRNISFNDRKFIIKPIDK----KAPDFVFFAPRVRVNKRILALCMGNHELY 204
FPW ++ IS+ F IK F P R K++ +C+ +H +
Sbjct: 36 FPWPKVLKISYKRSSFFIKIRPGEQEQYESTIGFKLPSYRAAKKLWKVCVEHHTFF 91
Score = 50.2 bits (120), Expect = 7e-09
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 53 GVNYFEIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQFKFRAKFYPED 111
GV+ + K+ +G ++ LGV + GL +Y+ + + V K + + F K P +
Sbjct: 1 GVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGE 59
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 57.6 bits (139), Expect = 3e-11
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDL 49
P RV++ ++M+P WE IT W+ EH+G R++A MEYLKIAQDL
Sbjct: 67 PKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDL 111
Score = 29.8 bits (67), Expect = 0.13
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 111 DVVEEIIQDITLRLFYLQVSR 131
+ EE++Q+IT LF+LQV +
Sbjct: 1 NAEEELVQEITQHLFFLQVKK 21
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 56.8 bits (137), Expect = 6e-11
Identities = 28/45 (62%), Positives = 37/45 (82%)
Query: 5 PLRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDL 49
P RV++QHK++ +WE I W +EH+GMLREDA++EYLKIAQDL
Sbjct: 67 PQRVLEQHKLNKDQWEERIQVWHEEHRGMLREDAVLEYLKIAQDL 111
Score = 31.8 bits (72), Expect = 0.031
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 111 DVVEEIIQDITLRLFYLQVSR 131
DV EE+IQDIT RLF+LQV
Sbjct: 1 DVSEELIQDITQRLFFLQVKE 21
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 55.3 bits (133), Expect = 2e-10
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 6 LRVMDQHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMY 52
+ E E + K ++ M A +E+L+ A+ L MY
Sbjct: 60 VSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY 106
Score = 24.5 bits (53), Expect = 9.3
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 115 EIIQDITLRLFYLQVSRS 132
++ +DIT LQ+ +
Sbjct: 5 QLTEDITRYYLCLQLRQD 22
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 114
Score = 51.4 bits (123), Expect = 4e-09
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 12 HKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMY 52
+ + E I K M +A + Y+K+A+ L+ Y
Sbjct: 74 KEYIKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARSLKTY 114
Score = 33.3 bits (76), Expect = 0.008
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 106 KFYPEDVVEEIIQDITLRLFYLQVSR 131
KF+ D + + L L Y+Q
Sbjct: 2 KFFYSDQNVDSRDPVQLNLLYVQARD 27
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken
(Gallus gallus) [TaxId: 9031]}
Length = 123
Score = 47.8 bits (113), Expect = 1e-07
Identities = 4/42 (9%), Positives = 18/42 (42%)
Query: 11 QHKMSPSEWESSITTWWKEHKGMLREDAMMEYLKIAQDLEMY 52
+ I +++ + RE++++++ +I + +
Sbjct: 82 LDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRF 123
>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 43.6 bits (103), Expect = 1e-06
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 15/69 (21%)
Query: 44 KIAQDLEMYGVNYF--EIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQF 101
++ + + + V +F + ++ KG WL V +QDV+KE+PL F
Sbjct: 29 QVVKTIGLREVWFFGLQYQDTKGFSTWL-------------KLNKKVTAQDVRKESPLLF 75
Query: 102 KFRAKFYPE 110
KFRAKFYPE
Sbjct: 76 KFRAKFYPE 84
>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId:
9606]}
Length = 84
Score = 40.1 bits (94), Expect = 2e-05
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 83 DNLTNVMSQDVKKENPLQFKFRAKFYPE 110
V+ DV KE P+ F F AKFYPE
Sbjct: 57 KMDKKVLDHDVSKEEPVTFHFLAKFYPE 84
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 35.4 bits (81), Expect = 0.006
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 209 KPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQL--EVEMAK 266
K D Q+ E ++ KL+ E + +K +E+ RL ++ E+E+A+
Sbjct: 274 KEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAE 333
Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQL 304
R DL A E+ +L +L+A E L + +
Sbjct: 334 RQYDLNRAAEL---RYGELPKLEAEVEALSEKLRGARF 368
Score = 30.0 bits (67), Expect = 0.35
Identities = 30/108 (27%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 211 DTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQD 270
D + A + +R KLQLEI ++K +S ERLK +E E+AK ++
Sbjct: 238 DEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEE 297
Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
+ + + R E L++L+ A+ L+ E++ E++ Q +LN+
Sbjct: 298 IAKLRAEWEREREILRKLREAQHRLD----EVRREIELAERQYDLNRA 341
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 32.6 bits (74), Expect = 0.012
Identities = 8/40 (20%), Positives = 23/40 (57%)
Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIR 310
L +A I ++ + ++L + ++ L R+ +L+ +L+ +
Sbjct: 47 LKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86
>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 32.0 bits (73), Expect = 0.012
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 17/68 (25%)
Query: 44 KIAQDLEMYGVNYF--EIKNKKGTELWLGVDALGLNIYEKEDNLTNVMSQDVKKENPLQF 101
++ + L + +YF I + ++ WL D+ + Q + P F
Sbjct: 29 RVCEHLNLLEEDYFGLAIWDNATSKTWL-------------DSAKEIKKQ--VRGVPWNF 73
Query: 102 KFRAKFYP 109
F KFYP
Sbjct: 74 TFNVKFYP 81
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 31.4 bits (71), Expect = 0.025
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
L +A+ I++LE+ ++ ++L+ Q L+ +L+
Sbjct: 42 LTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 30.6 bits (69), Expect = 0.045
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 271 LMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRN 311
L +A E I+ + + Q ++L+ + L+ +++ +
Sbjct: 42 LDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 129
Score = 31.3 bits (71), Expect = 0.059
Identities = 7/45 (15%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 251 QESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEEL 295
+E + ++ L+ ++ + + + +EA I++ E+ ++ + + E+
Sbjct: 87 EEQLRKIDMLQKKLVEVEDEKIEA---IKKKEKLMRHVDSMIEDF 128
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus)
[TaxId: 9913]}
Length = 86
Score = 30.2 bits (68), Expect = 0.068
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 27 WKEHKGMLREDAMMEYLKIAQDL-EMYGV 54
W E KG +EDAM Y+ ++L + YG+
Sbjct: 58 WNELKGTSKEDAMKAYIDKVEELKKKYGI 86
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 30.2 bits (68), Expect = 0.14
Identities = 14/86 (16%), Positives = 34/86 (39%)
Query: 218 MKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEM 277
+ +++ A +++R + E+ +++H+ V + E + AQ+M
Sbjct: 43 SLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKM 102
Query: 278 IRRLEEQLKQLQAAKEELEARQTELQ 303
E + L A E L+ + +
Sbjct: 103 ESNKENREAHLAAMLERLQEKDKHAE 128
Score = 28.3 bits (63), Expect = 0.66
Identities = 17/100 (17%), Positives = 37/100 (37%)
Query: 208 RKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKR 267
R+ D + K E+ K Q+ + L+ RE + Q+++E ++
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEK 97
Query: 268 DQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
ME+ + R + +++ A + EL+
Sbjct: 98 LAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELK 137
Score = 26.0 bits (57), Expect = 4.2
Identities = 15/97 (15%), Positives = 38/97 (39%)
Query: 221 QAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRR 280
+ R+ + Q++ + E ++AE + +R + EV +++ + +
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEK 97
Query: 281 LEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNK 317
L ++++ + +E A E E + NK
Sbjct: 98 LAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNK 134
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium
falciparum [TaxId: 5833]}
Length = 89
Score = 29.4 bits (66), Expect = 0.15
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 27 WKEHKGMLREDAMMEYLKIAQDL 49
WK + + REDA Y+ I ++
Sbjct: 61 WKSVENLNREDAQKRYVDIVSEI 83
>d1q06a_ a.6.1.3 (A:) Transcriptional regulator CueR {Escherichia
coli [TaxId: 562]}
Length = 127
Score = 29.3 bits (65), Expect = 0.24
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 250 HQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEA 297
+ES E + E + +E +++LQ+ +++L A
Sbjct: 60 LEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMRDQLLA 107
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
(Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Length = 102
Score = 28.9 bits (65), Expect = 0.27
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 215 VQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
V ++K + ++Q + L +K +E E L+Q ++ + +D+ +A
Sbjct: 31 VAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQF-LKTYQGTEDVSDA 89
Query: 275 QEMIRRLEEQLK 286
+ I +E L
Sbjct: 90 RSAITSAQELLD 101
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 29.7 bits (66), Expect = 0.37
Identities = 20/97 (20%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
Query: 216 QQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQ 275
++++ + + ++A+ + +++ + E+K + E LKQL +M L++ Q
Sbjct: 204 KEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQ 263
Query: 276 EMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
E L+ Q +Q Q KE + ++ E+Q ++ +
Sbjct: 264 ERTLALKLQ-EQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 28.6 bits (63), Expect = 0.95
Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Query: 207 RRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAK 266
R+ ++ Q +++E Q D+ E + E+ ES + ++ EM +
Sbjct: 169 RKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQR 228
Query: 267 RDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
+++ +ME +E R +E LKQL E + + Q
Sbjct: 229 KNEQMMEQKE--RSYQEHLKQLTEKMENDRVQLLKEQERTL 267
>d1wp1a_ f.5.1.1 (A:) Outer membrane protein OprM {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 456
Score = 29.8 bits (65), Expect = 0.50
Identities = 19/115 (16%), Positives = 39/115 (33%), Gaps = 2/115 (1%)
Query: 203 LYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEV 262
L + + K Q ++ E+A A E ++ + L V
Sbjct: 332 LPIFTAGSLRASLDYAKIQKDINVAQYEKAIQTAFQEVADGLAARGTFTEQLQAQRDL-V 390
Query: 263 EMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNK 317
+ + L + + ++ L L A + A+Q + L + ++ NL K
Sbjct: 391 KASDEYYQLADKR-YRTGVDNYLTLLDAQRSLFTAQQQLITDRLNQLTSEVNLYK 444
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 27.0 bits (60), Expect = 0.83
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 268 DQDLMEAQEMIRRLEEQLKQLQ-AAKEELEARQTELQLELQPI 309
D+D + + + L + Q A KEE E +Q EL+ PI
Sbjct: 28 DEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPI 70
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 27.6 bits (61), Expect = 1.00
Identities = 13/69 (18%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 227 NAKQQQRDKLQLEIAAREKAEKKHQESVE----RLKQLEVEMAKRDQDLMEAQEMIRRLE 282
A+ + ++ + + A +K ++++E + +LE + K ++L +++ +L
Sbjct: 63 KAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLS 122
Query: 283 EQLKQLQAA 291
Q ++L AA
Sbjct: 123 PQAEELLAA 131
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 27.3 bits (60), Expect = 2.2
Identities = 10/99 (10%), Positives = 32/99 (32%), Gaps = 4/99 (4%)
Query: 214 DVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLME 273
+ Q ++ A R + +++ + +ER++ +
Sbjct: 100 KLDPAAMQLALDQRAALADRTLGEWAEPFFGDEQRRQRHDLERIRIAN----DTTLSPEQ 155
Query: 274 AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
+ L+ QL + A++ Q + ++ ++
Sbjct: 156 KAARLAALDAQLTPDERAQQAALHAQQDAVTKIADLQKA 194
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 27.6 bits (60), Expect = 2.4
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 273 EAQEMIRRLEEQLKQLQAAKEELEARQTE---LQLELQPIR 310
+E++R E+Q +L+ KE+L E L + +R
Sbjct: 4 RTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 44
>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA
{Caulobacter crescentus [TaxId: 155892]}
Length = 104
Score = 25.7 bits (56), Expect = 3.0
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 272 MEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
E+ R E + L+ + L+A ++
Sbjct: 61 FNLGEVCERCEAGQESLEGVRTALDAALLDIA 92
>d1yg2a_ a.4.5.61 (A:) Hypothetical protein AphA {Vibrio cholerae
[TaxId: 666]}
Length = 178
Score = 26.5 bits (58), Expect = 3.2
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 201 HELYMRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQL 260
E + + + Q E ++ Q EI A A + +RL++L
Sbjct: 93 DEFSAKLMACSVQSAEPYRLQLAELVEESRKLVAHYQ-EIEAAYYANPAVLDKQQRLERL 151
Query: 261 EVEMAKRDQDLMEAQEMIRRLEEQLKQLQA 290
+ L+ Q I+ +E L +L A
Sbjct: 152 TLRRN-----LLVRQAWIQWADEVLAELNA 176
>d1ckqa_ c.52.1.1 (A:) Restriction endonuclease EcoRI {Escherichia
coli [TaxId: 562]}
Length = 261
Score = 26.8 bits (59), Expect = 3.5
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 246 AEKKHQ-ESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQA 290
AE KHQ + + ++ + + DQDLM A I R + + ++
Sbjct: 94 AEAKHQGKDIINIRNGLLVGKRGDQDLMAAGNAIERSHKNISEIAN 139
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 26.4 bits (57), Expect = 4.7
Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 6/74 (8%)
Query: 226 KNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQL 285
A+ + QL + + V + + + A+ +
Sbjct: 391 FMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSVEQYGALGGTARSSVDW----- 445
Query: 286 KQLQAAKEELEARQ 299
Q++ + L+A+Q
Sbjct: 446 -QIRQVRALLQAQQ 458
>d1r4wa_ c.47.1.13 (A:) Mitochondrial class kappa glutathione
S-transferase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 221
Score = 26.1 bits (56), Expect = 4.7
Identities = 8/51 (15%), Positives = 15/51 (29%)
Query: 26 WWKEHKGMLREDAMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGL 76
+ L + + E A +G+ T + G D + L
Sbjct: 154 LLNKISTELVKSKLRETTGAACKYGAFGLPTTVAHVDGKTYMLFGSDRMEL 204
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 26.1 bits (57), Expect = 5.3
Identities = 12/97 (12%), Positives = 25/97 (25%)
Query: 209 KPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRD 268
V+ Q ++ + + KK ++ + K + K
Sbjct: 103 TQLEQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKEL 162
Query: 269 QDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLE 305
Q + LE + E R+ +E
Sbjct: 163 QYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVE 199
>d1sdia_ a.198.1.1 (A:) Hypothetical protein YcfC {Escherichia coli
[TaxId: 562]}
Length = 213
Score = 25.9 bits (57), Expect = 5.8
Identities = 12/64 (18%), Positives = 22/64 (34%)
Query: 235 KLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEE 294
L ++R+ + L LE +++ L I L+ QL+ E
Sbjct: 70 LGVLNASSRQGLNAELTRYTLSLMVLERKLSSAKGALDTLGNRINGLQRQLEHFDLQSET 129
Query: 295 LEAR 298
L +
Sbjct: 130 LMSA 133
>d1q08a_ a.6.1.3 (A:) Transcriptional regulator ZntR {Escherichia
coli [TaxId: 562]}
Length = 94
Score = 24.9 bits (54), Expect = 6.6
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 266 KRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQ 303
+ D + QE ++E+L++++A EL++ Q LQ
Sbjct: 29 RIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQ 66
>d1r8ia_ a.8.7.1 (A:) Typo IV secretion system protein TraC
{Escherichia coli [TaxId: 562]}
Length = 187
Score = 25.7 bits (56), Expect = 6.9
Identities = 18/110 (16%), Positives = 40/110 (36%), Gaps = 9/110 (8%)
Query: 205 MRRRKPDTIDVQQMKAQAREEKNAKQQQRDKLQLEIAAREKAEKKHQESVERLKQLEVEM 264
M + + D+ +A A K ++ R AEK + ++ L ++
Sbjct: 81 MGQFNAEVDDMTPSEAIAYMNKKLAEKG-------AYDRVMAEKAYNNQMQELSDMQALT 133
Query: 265 AKRD--QDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQ 312
+ DL ++ R++ +Q + +L Q + + +R Q
Sbjct: 134 EQIKSTPDLKSIADLQARIQTSQGAIQGEQAKLNLMNMLQQSQDKLLRAQ 183
>d1r8ea1 a.6.1.3 (A:3-120) Transcription activator BmrR {Bacillus
subtilis [TaxId: 1423]}
Length = 118
Score = 24.9 bits (54), Expect = 7.0
Identities = 8/52 (15%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 257 LKQLEVEMAKRDQDLME-AQEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
L++++ ++L E R++ E+L L A ++ + + ++ +++
Sbjct: 64 LEEMKKAQDLEMEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQME 115
>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus
[TaxId: 271]}
Length = 180
Score = 25.5 bits (55), Expect = 7.8
Identities = 7/41 (17%), Positives = 19/41 (46%)
Query: 261 EVEMAKRDQDLMEAQEMIRRLEEQLKQLQAAKEELEARQTE 301
E+++A++ ++ MEA + + ++L + T
Sbjct: 22 EIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTA 62
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 107
Score = 24.7 bits (54), Expect = 7.8
Identities = 19/93 (20%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Query: 216 QQMKAQAREEKNAKQQ-QRDKLQLEIAAREKAEKKHQESVERLKQLEVEMAKRDQDLMEA 274
QQ++ QA+ KQ + + + A E + V + + +D+ E
Sbjct: 11 QQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEEL 70
Query: 275 QEMIRRLEEQLKQLQAAKEELEARQTELQLELQ 307
QE + L+ + K ++ +E + + E+Q+ +Q
Sbjct: 71 QEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103
Score = 24.7 bits (54), Expect = 8.8
Identities = 9/50 (18%), Positives = 25/50 (50%)
Query: 269 QDLMEAQEMIRRLEEQLKQLQAAKEELEARQTELQLELQPIRNQSNLNKV 318
Q++ ++L++Q + + K+ +E + E Q L+ + ++ +V
Sbjct: 1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEV 50
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688
{Staphylococcus epidermidis [TaxId: 1282]}
Length = 216
Score = 25.4 bits (55), Expect = 8.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 241 AAREKAEKKHQESVERLKQLEVE 263
A++ AE++HQ ++ LKQ E
Sbjct: 189 TAKKLAEERHQFMIQYLKQFMSE 211
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.377
Gapped
Lambda K H
0.267 0.0631 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,176,177
Number of extensions: 57822
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 150
Length of query: 318
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,240,546
Effective search space: 289047218
Effective search space used: 289047218
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.4 bits)