BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3984
         (183 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
           Resolution
 pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
           Domain At 3.0 Angstrom Resolution
          Length = 575

 Score =  205 bits (521), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/205 (62%), Positives = 144/205 (70%), Gaps = 43/205 (20%)

Query: 1   MMERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKK 60
           MM+RLEE+KNMEAAER KLE+EI+AKQEEV RIQ EV  KD ET+RLQEEVE+AR   +K
Sbjct: 392 MMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDAR---RK 448

Query: 61  QDEMNAALLMATSTPQXXXXXXXXXXXXXXXMLNGHVSRDLDTD---------------- 104
           QDE  AALL AT TPQ                 + HV+   DTD                
Sbjct: 449 QDEAAAALLAAT-TPQ-----------------HHHVAERADTDPDHDNASDAGSESGGG 490

Query: 105 ------DNIVDPVEERRTLAERNERLQDQLKMLKEDLAGTRDETKETAMDKIHRENVKQG 158
                 D++VDPV +RRTLAERNERL +QLK LK+DLA + DETKETAMDKIHRENV+QG
Sbjct: 491 DLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIHRENVRQG 550

Query: 159 RDKYKTLREIRKGNTKRRVDQFENM 183
           RDKYKTLREIRKGNTKRRVDQFENM
Sbjct: 551 RDKYKTLREIRKGNTKRRVDQFENM 575


>pdb|1EF1|C Chain C, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
           COMPLEX
 pdb|1EF1|D Chain D, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
           COMPLEX
          Length = 90

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/87 (57%), Positives = 62/87 (71%), Gaps = 1/87 (1%)

Query: 97  VSRDLDTDDNIVDPVEERRTL-AERNERLQDQLKMLKEDLAGTRDETKETAMDKIHRENV 155
            S DL  D    D  EE RT  AE+NER+Q  LK L  +LA  RDE+K+TA D IH EN 
Sbjct: 3   ASADLRADAMAKDRSEEERTTEAEKNERVQKHLKALTSELANARDESKKTANDXIHAENX 62

Query: 156 KQGRDKYKTLREIRKGNTKRRVDQFEN 182
           + GRDKYKTLR+IR+GNTK+R+D+FE+
Sbjct: 63  RLGRDKYKTLRQIRQGNTKQRIDEFES 89


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.306    0.123    0.311 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,220,791
Number of Sequences: 62578
Number of extensions: 141961
Number of successful extensions: 722
Number of sequences better than 100.0: 72
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 594
Number of HSP's gapped (non-prelim): 146
length of query: 183
length of database: 14,973,337
effective HSP length: 93
effective length of query: 90
effective length of database: 9,153,583
effective search space: 823822470
effective search space used: 823822470
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 48 (23.1 bits)