Query psy3984
Match_columns 183
No_of_seqs 121 out of 148
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 22:17:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3984.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3984hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00769 ERM: Ezrin/radixin/mo 100.0 2.4E-50 5.2E-55 341.4 14.3 179 2-183 63-246 (246)
2 KOG3529|consensus 99.9 1.6E-23 3.4E-28 195.7 3.1 179 2-183 409-596 (596)
3 KOG0114|consensus 75.6 0.38 8.3E-06 36.6 -2.0 16 160-175 40-55 (124)
4 PF05266 DUF724: Protein of un 72.8 52 0.0011 27.0 10.1 58 14-74 124-188 (190)
5 KOG1029|consensus 72.1 1.1E+02 0.0023 31.1 13.0 19 119-137 437-455 (1118)
6 PF04201 TPD52: Tumour protein 56.5 35 0.00077 27.6 5.6 41 11-51 26-66 (162)
7 PF00769 ERM: Ezrin/radixin/mo 55.2 91 0.002 26.5 8.3 52 3-54 36-87 (246)
8 PF04880 NUDE_C: NUDE protein, 54.6 26 0.00057 28.4 4.6 47 3-54 3-49 (166)
9 KOG3436|consensus 54.0 9 0.00019 29.5 1.8 21 122-142 15-35 (123)
10 PF04859 DUF641: Plant protein 47.9 1E+02 0.0022 24.0 6.9 40 19-58 85-124 (131)
11 PF07710 P53_tetramer: P53 tet 42.9 12 0.00027 23.6 0.8 15 157-171 16-30 (42)
12 PF06698 DUF1192: Protein of u 34.8 84 0.0018 21.2 4.0 26 16-41 23-48 (59)
13 KOG4010|consensus 32.8 1.4E+02 0.0031 24.8 5.8 43 10-52 40-82 (208)
14 COG3074 Uncharacterized protei 30.5 2E+02 0.0043 20.3 8.0 54 15-68 5-58 (79)
15 COG5509 Uncharacterized small 26.5 1.1E+02 0.0024 20.9 3.4 25 17-41 28-52 (65)
16 KOG4571|consensus 26.2 4.6E+02 0.01 23.2 8.2 50 5-54 239-288 (294)
17 PF06305 DUF1049: Protein of u 23.9 82 0.0018 20.7 2.5 20 120-139 49-68 (68)
18 PF08898 DUF1843: Domain of un 23.9 2.1E+02 0.0045 19.0 4.2 33 2-34 19-51 (53)
19 COG4026 Uncharacterized protei 23.8 4.8E+02 0.01 22.6 7.5 45 7-51 142-186 (290)
20 KOG4552|consensus 22.3 5E+02 0.011 22.2 8.1 48 8-55 54-101 (272)
21 KOG0963|consensus 22.3 7.5E+02 0.016 24.3 12.6 99 15-140 304-404 (629)
22 PF15082 DUF4549: Domain of un 22.1 1.3E+02 0.0028 23.8 3.6 24 112-137 9-32 (144)
23 KOG1144|consensus 22.1 5.4E+02 0.012 26.4 8.4 36 12-47 236-271 (1064)
24 smart00340 HALZ homeobox assoc 22.0 1.2E+02 0.0025 19.3 2.7 18 116-133 16-33 (44)
25 PRK00888 ftsB cell division pr 21.7 3.3E+02 0.0073 20.0 5.9 46 17-68 30-75 (105)
26 PF05278 PEARLI-4: Arabidopsis 21.5 5.5E+02 0.012 22.4 9.7 58 8-68 187-244 (269)
27 PF10224 DUF2205: Predicted co 21.2 1.5E+02 0.0032 21.2 3.4 41 113-158 17-57 (80)
28 PF14916 CCDC92: Coiled-coil d 21.2 98 0.0021 21.0 2.4 39 113-151 3-46 (60)
29 PRK15422 septal ring assembly 21.1 3.2E+02 0.0069 19.5 7.7 53 16-68 6-58 (79)
30 PF12777 MT: Microtubule-bindi 21.0 5.1E+02 0.011 22.8 7.7 51 12-65 233-283 (344)
31 PRK11637 AmiB activator; Provi 20.4 6.4E+02 0.014 22.8 9.9 64 2-68 56-119 (428)
No 1
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=100.00 E-value=2.4e-50 Score=341.45 Aligned_cols=179 Identities=47% Similarity=0.718 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcCCCCC---
Q psy3984 2 MERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAALLMATSTPQHH--- 78 (183)
Q Consensus 2 ~~~l~~~~~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak~~L~~~~s~~~~~--- 78 (183)
+.+|..++.+++++|..|++++++++.+|.+|.+++.+++.|+.+|+.+|..|+.++. +++++|+.++++|++|
T Consensus 63 ~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~---~ak~~L~~~~~~~~~p~~~ 139 (246)
T PF00769_consen 63 KQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEE---EAKEELLEVMSAPPPPPHH 139 (246)
T ss_dssp HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HTTS--GGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcccccccc
Confidence 6789999999999999999999999999999999999999999999999999955555 9999998888765433
Q ss_pred CCCCCC-CCCCccccccCCcccCCCCCCCCCCc-hHHHHHHHHhhHHHHHHHHHHHhhhhcccchhhcchhHHhHHHHhh
Q psy3984 79 HVEENE-HDENDDNMLNGHVSRDLDTDDNIVDP-VEERRTLAERNERLQDQLKMLKEDLAGTRDETKETAMDKIHRENVK 156 (183)
Q Consensus 79 ~~~~~~-~~~~~~~~~~~~~s~dl~~~~~~~~~-~eeR~t~aEKnk~LQ~QLk~LksEl~~lkde~k~t~~D~lh~en~~ 156 (183)
+|+.+. ++.......++++|+||+++++..++ +++|+||++||++||+||++|++||+++||++|+|++|+||.+||+
T Consensus 140 ~v~~~~~~~~~~~~~~~~~~s~dl~~~~~~~~~sEeeR~t~~EKnk~lq~QL~~L~~EL~~~kde~k~T~~D~~h~en~~ 219 (246)
T PF00769_consen 140 PVAEPDEGDEDENDEENSEYSADLETDGDMKDRSEEERVTYAEKNKRLQEQLKELKSELEQLKDEEKQTQLDIIHAENVR 219 (246)
T ss_dssp S------------------EEEE---T-T--TCGGGC---HHHH-HHHHHHHHHHHHHHHTTB-CCG--HHHHHHHHHHH
T ss_pred CCCCCCCCCccccccccccccccccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHH
Confidence 222211 11111113344569999998888777 6899999999999999999999999999999999999999999999
Q ss_pred ccchhhHHHHHhhccchhhhhhhhhcC
Q psy3984 157 QGRDKYKTLREIRKGNTKRRVDQFENM 183 (183)
Q Consensus 157 ~G~dKy~Tlr~ir~Gntk~Ri~~Fe~m 183 (183)
+|+|||+|||+||+||||+|||+||+|
T Consensus 220 ~g~~ky~tl~~i~~g~tk~ri~~fe~~ 246 (246)
T PF00769_consen 220 AGRDKYKTLRQIRQGNTKQRIDEFEEM 246 (246)
T ss_dssp TT--HHHHHHHHT-S-HHHHHHHHHC-
T ss_pred hchhHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999998
No 2
>KOG3529|consensus
Probab=99.87 E-value=1.6e-23 Score=195.73 Aligned_cols=179 Identities=40% Similarity=0.561 Sum_probs=139.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HhhcC---CCC
Q psy3984 2 MERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAALL-MATST---PQH 77 (183)
Q Consensus 2 ~~~l~~~~~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak~~L~-~~~s~---~~~ 77 (183)
...+++++.++.+....+...+...+..|+.+..+..+++.+...|+.....+ +.++...+..+. +.+++ |.+
T Consensus 409 ~~~le~e~~d~~k~~~~~~~~~~~~s~~ia~~~~e~~rk~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~~p~~ 485 (596)
T KOG3529|consen 409 KQKLEEEKHDSEKKPRSLETSIGEMSPEIARLEGEANRKDTELSELQAPAGSR---QADQNKLKEELKDEPMSAIETPPP 485 (596)
T ss_pred HHHHHHHhhccccchhhccccccccCcchhhcchhhhhhccccccccCchhhh---HhhhhhhhhhhccccccccCCCCC
Confidence 35678888899999999999999999999999999999999999999998888 555546665542 33332 222
Q ss_pred C-CCCC--CCCCCCcc-ccccCCc-ccCCCCCCCCCCchHHHHHHHHhhHHHHHHHHHHHhhhhcccchhhcchhHHhHH
Q psy3984 78 H-HVEE--NEHDENDD-NMLNGHV-SRDLDTDDNIVDPVEERRTLAERNERLQDQLKMLKEDLAGTRDETKETAMDKIHR 152 (183)
Q Consensus 78 ~-~~~~--~~~~~~~~-~~~~~~~-s~dl~~~~~~~~~~eeR~t~aEKnk~LQ~QLk~LksEl~~lkde~k~t~~D~lh~ 152 (183)
+ +++. +..++.+. ..+++.. +-++++....+.++++|+++++||.+|++||.+|+++|..+|++++.|.+|++|+
T Consensus 486 ~~~~~~~~~~~~e~~~~g~s~~~~~s~~~~~~~~~~~~eker~te~ek~~~~k~qL~aL~~e~~~~k~~~~~t~~d~~h~ 565 (596)
T KOG3529|consen 486 PCHIPPSEHELDEGDNQGVSGSSTSSPLLDMGLGLPRLEKERVTEAEKNERVRDQLDALRSELAPAKDEERPTAHDILHA 565 (596)
T ss_pred cccCCCccccccccccCCCCccccCCCCccccccccchhHHHHHHHhhhHHHHHHHHhcccccccCCCcccccccchhhh
Confidence 1 1111 11121111 0111111 3345555566777899999999999999999999999999999999999999999
Q ss_pred HHhhccchhhHHHHHhhccchhhhhhhhhcC
Q psy3984 153 ENVKQGRDKYKTLREIRKGNTKRRVDQFENM 183 (183)
Q Consensus 153 en~~~G~dKy~Tlr~ir~Gntk~Ri~~Fe~m 183 (183)
+|++.|+|||+||++||+||||+||++||+|
T Consensus 566 ~n~r~G~dk~~tLr~ir~GntKqRid~fE~m 596 (596)
T KOG3529|consen 566 ENVRAGRDKYKTLRQSRSGNTKQRIDQFEGM 596 (596)
T ss_pred hhcccCCCcceehhhhcCCCcchhhhhhccC
Confidence 9999999999999999999999999999998
No 3
>KOG0114|consensus
Probab=75.63 E-value=0.38 Score=36.61 Aligned_cols=16 Identities=63% Similarity=0.933 Sum_probs=14.4
Q ss_pred hhhHHHHHhhccchhh
Q psy3984 160 DKYKTLREIRKGNTKR 175 (183)
Q Consensus 160 dKy~Tlr~ir~Gntk~ 175 (183)
-||.|+||||.|||+.
T Consensus 40 Gkyg~IrQIRiG~~k~ 55 (124)
T KOG0114|consen 40 GKYGTIRQIRIGNTKE 55 (124)
T ss_pred hcccceEEEEecCccC
Confidence 3899999999999984
No 4
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=72.77 E-value=52 Score=27.04 Aligned_cols=58 Identities=24% Similarity=0.376 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Q psy3984 14 AERAKLEEEIQAKQEEVQRIQSE-------VNSKDEETKRLQEEVENARNARKKQDEMNAALLMATST 74 (183)
Q Consensus 14 ~ek~~L~~e~~~~~~~i~~l~ee-------~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak~~L~~~~s~ 74 (183)
.+...++.+|..++.+|..|+.. .+..+.+..+++..+... ......++-+...+.+.
T Consensus 124 ~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l---~~~~~~~e~~F~~~~aa 188 (190)
T PF05266_consen 124 AELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEAL---KEEIENAELEFQSVAAA 188 (190)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcC
Confidence 34566777777777777766664 666667777888877777 55555666555555443
No 5
>KOG1029|consensus
Probab=72.09 E-value=1.1e+02 Score=31.05 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=11.0
Q ss_pred HhhHHHHHHHHHHHhhhhc
Q psy3984 119 ERNERLQDQLKMLKEDLAG 137 (183)
Q Consensus 119 EKnk~LQ~QLk~LksEl~~ 137 (183)
.|+++|+..|.+|.-.|.+
T Consensus 437 ak~~ql~~eletLn~k~qq 455 (1118)
T KOG1029|consen 437 AKKKQLQQELETLNFKLQQ 455 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666666666666544443
No 6
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=56.49 E-value=35 Score=27.59 Aligned_cols=41 Identities=22% Similarity=0.456 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy3984 11 MEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEV 51 (183)
Q Consensus 11 ~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el 51 (183)
.+.+|++.|..||...+.+|.-|+.---.|+.-...|+..|
T Consensus 26 LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 26 LSEEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45678999999999999999999998888887777777665
No 7
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=55.19 E-value=91 Score=26.47 Aligned_cols=52 Identities=35% Similarity=0.519 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy3984 3 ERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENA 54 (183)
Q Consensus 3 ~~l~~~~~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~A 54 (183)
..|+.+......++..|+.+..++...+.+|......-..+-..|..++.++
T Consensus 36 ~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~ 87 (246)
T PF00769_consen 36 EELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREA 87 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777778888888888888888888887777776655555555443
No 8
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=54.63 E-value=26 Score=28.38 Aligned_cols=47 Identities=28% Similarity=0.413 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy3984 3 ERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENA 54 (183)
Q Consensus 3 ~~l~~~~~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~A 54 (183)
+.++..-++..+...-|+.||.++ ..|.++.+|=-.|+..|++|+ .+
T Consensus 3 eD~EsklN~AIERnalLE~ELdEK----E~L~~~~QRLkDE~RDLKqEl-~V 49 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELDEK----ENLREEVQRLKDELRDLKQEL-IV 49 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCH-----------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH-HH
Confidence 356777788889999999999765 458888888888999999999 55
No 9
>KOG3436|consensus
Probab=54.03 E-value=9 Score=29.47 Aligned_cols=21 Identities=43% Similarity=0.417 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhcccchh
Q psy3984 122 ERLQDQLKMLKEDLAGTRDET 142 (183)
Q Consensus 122 k~LQ~QLk~LksEl~~lkde~ 142 (183)
+.|+.||.+|+.||++||+..
T Consensus 15 e~L~~ql~dLK~ELa~LRv~K 35 (123)
T KOG3436|consen 15 EQLLKQLDDLKVELAQLRVAK 35 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998854
No 10
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=47.87 E-value=1e+02 Score=23.97 Aligned_cols=40 Identities=25% Similarity=0.440 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q psy3984 19 LEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNAR 58 (183)
Q Consensus 19 L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae 58 (183)
+...|+-|+.-+.+|+.+...|+.|...|+.+|.++....
T Consensus 85 ~qsli~~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n 124 (131)
T PF04859_consen 85 QQSLIKTYEIVVKKLEAELRAKDSEIDRLREKLDELNRAN 124 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888899999999999999999999999984333
No 11
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=42.95 E-value=12 Score=23.58 Aligned_cols=15 Identities=33% Similarity=0.900 Sum_probs=13.0
Q ss_pred ccchhhHHHHHhhcc
Q psy3984 157 QGRDKYKTLREIRKG 171 (183)
Q Consensus 157 ~G~dKy~Tlr~ir~G 171 (183)
.||..|..|++|+-|
T Consensus 16 rGRe~yE~l~kine~ 30 (42)
T PF07710_consen 16 RGRERYEMLKKINEA 30 (42)
T ss_dssp ESHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHH
Confidence 599999999999754
No 12
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=34.80 E-value=84 Score=21.16 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhH
Q psy3984 16 RAKLEEEIQAKQEEVQRIQSEVNSKD 41 (183)
Q Consensus 16 k~~L~~e~~~~~~~i~~l~ee~e~k~ 41 (183)
-..|.+.|+.++++|.+++.+..+|.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888776654
No 13
>KOG4010|consensus
Probab=32.80 E-value=1.4e+02 Score=24.84 Aligned_cols=43 Identities=16% Similarity=0.385 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy3984 10 NMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVE 52 (183)
Q Consensus 10 ~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~ 52 (183)
.-+..|++.|..||...+.+|.-|+.--..|+.=+..|+..|=
T Consensus 40 ~LSe~Ekeelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLG 82 (208)
T KOG4010|consen 40 ALSEEEKEELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLG 82 (208)
T ss_pred hhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456889999999999999999998877777777777776663
No 14
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.46 E-value=2e+02 Score=20.31 Aligned_cols=54 Identities=28% Similarity=0.407 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3984 15 ERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAAL 68 (183)
Q Consensus 15 ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak~~L 68 (183)
--++|+++|.-+-.-|..|+-+.+.=-.....|.+++..|+.+.+.++.-.+.|
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneql 58 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 346777887777777777777776655566678888887766666665555555
No 15
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=26.49 E-value=1.1e+02 Score=20.86 Aligned_cols=25 Identities=40% Similarity=0.611 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhH
Q psy3984 17 AKLEEEIQAKQEEVQRIQSEVNSKD 41 (183)
Q Consensus 17 ~~L~~e~~~~~~~i~~l~ee~e~k~ 41 (183)
..|.+.|+-++.+|+++.-+..+|.
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4577788888888888876655543
No 16
>KOG4571|consensus
Probab=26.17 E-value=4.6e+02 Score=23.22 Aligned_cols=50 Identities=12% Similarity=0.245 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy3984 5 LEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENA 54 (183)
Q Consensus 5 l~~~~~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~A 54 (183)
..+=+.-+..+++.|.-++..++.+=.+|.+.+...+.|...|++=+.+.
T Consensus 239 AtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 239 ATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667888999999999999999999999999999999888877766
No 17
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.89 E-value=82 Score=20.65 Aligned_cols=20 Identities=40% Similarity=0.601 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHhhhhccc
Q psy3984 120 RNERLQDQLKMLKEDLAGTR 139 (183)
Q Consensus 120 Knk~LQ~QLk~LksEl~~lk 139 (183)
+.++++.+++.|..+++.+|
T Consensus 49 ~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 55778889999998888775
No 18
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=23.88 E-value=2.1e+02 Score=18.98 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3984 2 MERLEESKNMEAAERAKLEEEIQAKQEEVQRIQ 34 (183)
Q Consensus 2 ~~~l~~~~~~~~~ek~~L~~e~~~~~~~i~~l~ 34 (183)
|+.|..+++.+-.+.-.+...+..+..+|++++
T Consensus 19 MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE 51 (53)
T PF08898_consen 19 MKALAAQAEQQLAEAGDIAAALEKLKAEIAKLE 51 (53)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHh
Confidence 456666777777777777888888888888775
No 19
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=23.77 E-value=4.8e+02 Score=22.58 Aligned_cols=45 Identities=22% Similarity=0.333 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q psy3984 7 ESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEV 51 (183)
Q Consensus 7 ~~~~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el 51 (183)
..-....++++.|-.++.++++++..+++.-.+=+.|..+|.+.+
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~ 186 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666766766666666666665555555444444444433
No 20
>KOG4552|consensus
Probab=22.35 E-value=5e+02 Score=22.22 Aligned_cols=48 Identities=27% Similarity=0.392 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q psy3984 8 SKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENAR 55 (183)
Q Consensus 8 ~~~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar 55 (183)
.+..+-++--.|+.+.......+..|+..+++++.+-.+||..|..|.
T Consensus 54 ~kd~ef~~llkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE 101 (272)
T KOG4552|consen 54 SKDDEFKTLLKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAE 101 (272)
T ss_pred hccHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344555566677788888888889999999999999999999998883
No 21
>KOG0963|consensus
Probab=22.33 E-value=7.5e+02 Score=24.29 Aligned_cols=99 Identities=23% Similarity=0.356 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH--HHhhcCCCCCCCCCCCCCCCcccc
Q psy3984 15 ERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAAL--LMATSTPQHHHVEENEHDENDDNM 92 (183)
Q Consensus 15 ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak~~L--~~~~s~~~~~~~~~~~~~~~~~~~ 92 (183)
.+.-|..++..-.+.|..++.+...+..+-+.++..|.. ..+-++.|.+| +..+- + +.+.+..+.++.
T Consensus 304 ~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~----~sDYeeIK~ELsiLk~ie---f---~~se~a~~~~~~ 373 (629)
T KOG0963|consen 304 LEASLVEEREKHKAQISALEKELKAKISELEELKEKLNS----RSDYEEIKKELSILKAIE---F---GDSEEANDEDET 373 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hccHHHHHHHHHHHHHhh---c---CCcccccccccc
Confidence 344455555556666666666666666666666666654 45555666665 22211 1 100000000000
Q ss_pred ccCCcccCCCCCCCCCCchHHHHHHHHhhHHHHHHHHHHHhhhhcccc
Q psy3984 93 LNGHVSRDLDTDDNIVDPVEERRTLAERNERLQDQLKMLKEDLAGTRD 140 (183)
Q Consensus 93 ~~~~~s~dl~~~~~~~~~~eeR~t~aEKnk~LQ~QLk~LksEl~~lkd 140 (183)
. .-...-.++||+.||.++-.|+.-...+..
T Consensus 374 ~-----------------~~leslLl~knr~lq~e~a~Lr~~n~~~~~ 404 (629)
T KOG0963|consen 374 A-----------------KTLESLLLEKNRKLQNENASLRVANSGLSG 404 (629)
T ss_pred c-----------------chHHHHHHHHHhhhhHHHHHHhccccccch
Confidence 0 012345688999999999888776555544
No 22
>PF15082 DUF4549: Domain of unknown function (DUF4549)
Probab=22.12 E-value=1.3e+02 Score=23.79 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=19.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHhhhhc
Q psy3984 112 EERRTLAERNERLQDQLKMLKEDLAG 137 (183)
Q Consensus 112 eeR~t~aEKnk~LQ~QLk~LksEl~~ 137 (183)
-+|+-.+||. |..+|.+|++||+.
T Consensus 9 serv~~lEke--La~~L~eLK~eiEE 32 (144)
T PF15082_consen 9 SERVQQLEKE--LAKELYELKNEIEE 32 (144)
T ss_pred hHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4677777776 88999999999975
No 23
>KOG1144|consensus
Probab=22.05 E-value=5.4e+02 Score=26.37 Aligned_cols=36 Identities=31% Similarity=0.422 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q psy3984 12 EAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRL 47 (183)
Q Consensus 12 ~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~l 47 (183)
..+|+.+.+++.++...+-.++.++...+..|.++.
T Consensus 236 eeEE~~r~eeEEer~~ee~E~~~eEak~kkKekeke 271 (1064)
T KOG1144|consen 236 EEEERLRREEEEERRREEEEAQEEEAKEKKKEKEKE 271 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555554433
No 24
>smart00340 HALZ homeobox associated leucin zipper.
Probab=22.03 E-value=1.2e+02 Score=19.32 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=14.7
Q ss_pred HHHHhhHHHHHHHHHHHh
Q psy3984 116 TLAERNERLQDQLKMLKE 133 (183)
Q Consensus 116 t~aEKnk~LQ~QLk~Lks 133 (183)
+..+-|.+||..|.+|++
T Consensus 16 ~LteeNrRL~ke~~eLra 33 (44)
T smart00340 16 SLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456789999999999874
No 25
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=21.73 E-value=3.3e+02 Score=19.99 Aligned_cols=46 Identities=13% Similarity=0.222 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3984 17 AKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAAL 68 (183)
Q Consensus 17 ~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak~~L 68 (183)
.+|.++++....+++.+..+...=..+...|+..-.-. ++ .|..+|
T Consensus 30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyi---Ee---~AR~~L 75 (105)
T PRK00888 30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAI---EE---RARNEL 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHH---HH---HHHHHc
Confidence 45566666666666666666666666666776643222 33 566665
No 26
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=21.46 E-value=5.5e+02 Score=22.43 Aligned_cols=58 Identities=17% Similarity=0.429 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3984 8 SKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAAL 68 (183)
Q Consensus 8 ~~~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak~~L 68 (183)
...+-..+++.....+.....+...+.++..+++++...++..+.+. ..++.+++.+.
T Consensus 187 ~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~---~~rl~~l~~~~ 244 (269)
T PF05278_consen 187 QHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEM---KGRLGELEMES 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 34566677777788888888888888888888888888888888777 44444555443
No 27
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=21.21 E-value=1.5e+02 Score=21.18 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=27.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHhhhhcccchhhcchhHHhHHHHhhcc
Q psy3984 113 ERRTLAERNERLQDQLKMLKEDLAGTRDETKETAMDKIHRENVKQG 158 (183)
Q Consensus 113 eR~t~aEKnk~LQ~QLk~LksEl~~lkde~k~t~~D~lh~en~~~G 158 (183)
++-.....=+.||+.|..|...++.+|.+ +|.|-.+|--.|
T Consensus 17 ~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E-----~~kL~~EN~~Lq 57 (80)
T PF10224_consen 17 EKEELIQEILELQDSLEALSDRVEEVKEE-----NEKLESENEYLQ 57 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 34444555667888888888777776554 667777776655
No 28
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=21.19 E-value=98 Score=20.97 Aligned_cols=39 Identities=21% Similarity=0.273 Sum_probs=29.1
Q ss_pred HHHHHHHhhHH-HHHH----HHHHHhhhhcccchhhcchhHHhH
Q psy3984 113 ERRTLAERNER-LQDQ----LKMLKEDLAGTRDETKETAMDKIH 151 (183)
Q Consensus 113 eR~t~aEKnk~-LQ~Q----Lk~LksEl~~lkde~k~t~~D~lh 151 (183)
.|+-.+++|-. ||.+ |..|-.||+.|+...+.-.++.+-
T Consensus 3 ~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL~m 46 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKLIM 46 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeeee
Confidence 46778888844 3433 899999999999998887666553
No 29
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.09 E-value=3.2e+02 Score=19.53 Aligned_cols=53 Identities=28% Similarity=0.431 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3984 16 RAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAAL 68 (183)
Q Consensus 16 k~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak~~L 68 (183)
-++|+++|..+-.-|..|+-+.+.=-.....|.+++..++.....+..-...|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qL 58 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHL 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35788888888888888877776665566677777776655555444444443
No 30
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=21.02 E-value=5.1e+02 Score=22.80 Aligned_cols=51 Identities=22% Similarity=0.393 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy3984 12 EAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMN 65 (183)
Q Consensus 12 ~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak 65 (183)
....-.....++......|..|...-+.-..+..+|+.++..+ +.++..|.
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~---~~kl~rA~ 283 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEET---ERKLERAE 283 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhccHH
Confidence 3344445666788888888888888888888888888888888 77665554
No 31
>PRK11637 AmiB activator; Provisional
Probab=20.44 E-value=6.4e+02 Score=22.76 Aligned_cols=64 Identities=11% Similarity=0.274 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3984 2 MERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAAL 68 (183)
Q Consensus 2 ~~~l~~~~~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak~~L 68 (183)
...+.............+..+|..+..+|..+...-.....+-..++.++... +.++..++..+
T Consensus 56 i~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l---~~eI~~~q~~l 119 (428)
T PRK11637 56 IAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDEL---NASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Done!