Query psy3984
Match_columns 183
No_of_seqs 121 out of 148
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 22:18:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i1j_A Moesin; FERM, coiled-co 100.0 1.8E-45 6E-50 341.5 9.7 179 1-183 392-575 (575)
2 1ef1_C Moesin; membrane, FERM 100.0 5.4E-37 1.8E-41 222.1 8.2 86 98-183 4-90 (90)
3 1ic2_A Tropomyosin alpha chain 55.0 45 0.0015 22.3 8.5 39 15-53 35-73 (81)
4 1aie_A P53; oligomer, DNA; 1.5 48.7 5.9 0.0002 22.6 0.9 15 157-171 8-22 (31)
5 3oja_B Anopheles plasmodium-re 44.0 95 0.0032 27.4 8.6 43 10-52 505-547 (597)
6 3vkg_A Dynein heavy chain, cyt 38.0 1.3E+02 0.0044 33.5 9.6 58 5-65 2019-2076(3245)
7 1kil_E Complexin I snare-compl 37.1 9.1 0.00031 23.9 0.5 12 152-163 36-48 (49)
8 3zy0_A Tumor protein P63; tran 36.6 12 0.0004 21.5 0.9 15 157-171 11-25 (32)
9 3viq_B Mating-type switching p 33.7 30 0.001 24.0 2.8 34 122-155 11-52 (85)
10 1jnm_A Proto-oncogene C-JUN; B 31.9 59 0.002 20.6 3.9 27 114-140 30-57 (62)
11 1gu4_A CAAT/enhancer binding p 29.5 49 0.0017 22.4 3.2 28 113-140 43-71 (78)
12 2akf_A Coronin-1A; coiled coil 27.7 85 0.0029 17.5 3.5 22 18-39 3-24 (32)
13 1hjb_A Ccaat/enhancer binding 27.5 54 0.0018 22.7 3.2 28 113-140 43-71 (87)
14 1olg_A Tumor suppressor P53 (o 26.3 21 0.00073 21.6 0.8 15 157-171 15-29 (42)
15 3u1c_A Tropomyosin alpha-1 cha 25.9 1.7E+02 0.0058 20.3 10.6 43 12-54 14-56 (101)
16 2wqi_A Tumor protein P73; tumo 24.2 25 0.00085 22.2 0.9 15 157-171 12-26 (51)
17 3rk3_E Complexin-1; snare prot 24.1 21 0.0007 23.3 0.5 16 151-166 38-54 (63)
18 1t6f_A Geminin; coiled-coil, c 24.0 1.1E+02 0.0039 17.7 3.9 24 14-37 7-30 (37)
19 2dfs_A Myosin-5A; myosin-V, in 23.6 4.6E+02 0.016 25.7 10.2 29 17-45 980-1008(1080)
20 3cvf_A Homer-3, homer protein 23.2 1.8E+02 0.0061 19.7 5.3 23 44-69 29-51 (79)
21 3zy1_A Tumor protein 63; trans 23.0 27 0.00094 21.5 0.9 15 157-171 11-25 (46)
22 3hnw_A Uncharacterized protein 22.7 2.3E+02 0.008 20.8 7.6 46 19-67 66-111 (138)
23 1l4a_E Synaphin A; snare, snar 22.5 23 0.00078 24.1 0.5 16 151-166 42-58 (79)
24 3ra3_B P2F; coiled coil domain 21.3 1.1E+02 0.0037 16.4 3.0 19 16-34 9-27 (28)
25 2jee_A YIIU; FTSZ, septum, coi 21.2 2E+02 0.0069 19.6 8.8 41 16-56 8-48 (81)
26 3ra3_A P1C; coiled coil domain 20.7 63 0.0021 17.4 1.9 20 120-139 8-27 (28)
27 2zxx_A Geminin; coiled-coil, c 20.6 69 0.0024 21.9 2.6 33 112-144 23-59 (79)
No 1
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=100.00 E-value=1.8e-45 Score=341.47 Aligned_cols=179 Identities=69% Similarity=0.934 Sum_probs=100.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcCCCCC--
Q psy3984 1 MMERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAALLMATSTPQHH-- 78 (183)
Q Consensus 1 ~~~~l~~~~~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak~~L~~~~s~~~~~-- 78 (183)
++.+|..++++++++|++|++++++++.+|.+|.+++++|+.|+.+|+++|..||.+++ +++++|+.++++|++|
T Consensus 392 ~~~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~---~~~~~l~~~~~~~~~~~~ 468 (575)
T 2i1j_A 392 MMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDARRKQD---EAAAALLAATTPQHHHVA 468 (575)
T ss_dssp --------------------------------------------------CHHHHHHHH---HHHHHHHTTSCCGGGSCC
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhccCCccccc
Confidence 46789999999999999999999999999999999999999999999999999966666 9999999998866321
Q ss_pred -CCCCCC-CCCCccccccCCcccCCC-CCCCCCCchHHHHHHHHhhHHHHHHHHHHHhhhhcccchhhcchhHHhHHHHh
Q psy3984 79 -HVEENE-HDENDDNMLNGHVSRDLD-TDDNIVDPVEERRTLAERNERLQDQLKMLKEDLAGTRDETKETAMDKIHRENV 155 (183)
Q Consensus 79 -~~~~~~-~~~~~~~~~~~~~s~dl~-~~~~~~~~~eeR~t~aEKnk~LQ~QLk~LksEl~~lkde~k~t~~D~lh~en~ 155 (183)
+++..+ ++.. ++.+....|+||+ ++++..++.++|+||++||++||+||++|++||+++||++|+|++|+||++||
T Consensus 469 ~~~~~~~~~~~~-~~~~~~~~~~el~~~~~~~~~~~~eR~~~~ekn~~lq~qL~~L~~el~~~r~~~k~t~~D~lh~en~ 547 (575)
T 2i1j_A 469 ERADTDPDHDNA-SDAGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIHRENV 547 (575)
T ss_dssp CC----------------CEEEEECCCCCTTCCCGGGGCCCHHHHCHHHHHHHHHHHHHHHTTBCGGGCCHHHHHHHHHH
T ss_pred cccccccccccc-ccccccccchhhhccccccccchHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHhh
Confidence 111111 1111 1111122277886 55544444499999999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHhhccchhhhhhhhhcC
Q psy3984 156 KQGRDKYKTLREIRKGNTKRRVDQFENM 183 (183)
Q Consensus 156 ~~G~dKy~Tlr~ir~Gntk~Ri~~Fe~m 183 (183)
++|||||||||+||+||||+|||+||+|
T Consensus 548 ~~GrdKykTLr~ir~Gntk~Rid~FE~m 575 (575)
T 2i1j_A 548 RQGRDKYKTLREIRKGNTKRRVDQFENM 575 (575)
T ss_dssp HTTCCHHHHHHHHTCSCHHHHHHHHHTC
T ss_pred hcCchHHHHHHHHhcCCchHHHHhhccC
Confidence 9999999999999999999999999998
No 2
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=100.00 E-value=5.4e-37 Score=222.06 Aligned_cols=86 Identities=59% Similarity=0.844 Sum_probs=81.6
Q ss_pred ccCCCCCCCCCCch-HHHHHHHHhhHHHHHHHHHHHhhhhcccchhhcchhHHhHHHHhhccchhhHHHHHhhccchhhh
Q psy3984 98 SRDLDTDDNIVDPV-EERRTLAERNERLQDQLKMLKEDLAGTRDETKETAMDKIHRENVKQGRDKYKTLREIRKGNTKRR 176 (183)
Q Consensus 98 s~dl~~~~~~~~~~-eeR~t~aEKnk~LQ~QLk~LksEl~~lkde~k~t~~D~lh~en~~~G~dKy~Tlr~ir~Gntk~R 176 (183)
|+||.++++..++. ++|++|++||++||.||++|++||+++|+++|+|++|+||++||++|+|||+|||+||+||||+|
T Consensus 4 ~~~l~~~~~~~~~~E~eR~~~~eKsk~lq~QL~~Lk~ELe~lk~~~k~t~~D~lh~eN~~~G~dKykTLr~ir~GnTk~R 83 (90)
T 1ef1_C 4 SADLRADAMAKDRSEEERTTEAEKNERVQKHLKALTSELANARDESKKTANDMIHAENMRLGRDKYKTLRQIRQGNTKQR 83 (90)
T ss_dssp CCCCCCCCCCCTTGGGGCCCHHHHCHHHHHHHHHHHHHHHTTBCTTCCCHHHHHHHHHHHTTCCHHHHHHHHTCSCHHHH
T ss_pred hhhccccccccCchHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHhcchhHHHHHHHHHccCHHHH
Confidence 67888888776654 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcC
Q psy3984 177 VDQFENM 183 (183)
Q Consensus 177 i~~Fe~m 183 (183)
|++||+|
T Consensus 84 i~~FE~m 90 (90)
T 1ef1_C 84 IDEFESM 90 (90)
T ss_dssp HHHHHTC
T ss_pred HHHhhcC
Confidence 9999998
No 3
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=54.96 E-value=45 Score=22.34 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy3984 15 ERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVEN 53 (183)
Q Consensus 15 ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~ 53 (183)
...+++.+|..++.+|..++.+.++-.......+..|..
T Consensus 35 ~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 35 RSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555444333333333333333
No 4
>1aie_A P53; oligomer, DNA; 1.50A {Homo sapiens} SCOP: a.53.1.1 PDB: 2j0z_A 1c26_A 1pes_A 1pet_A 2j10_A 1hs5_A 2j11_A
Probab=48.72 E-value=5.9 Score=22.60 Aligned_cols=15 Identities=27% Similarity=0.866 Sum_probs=13.1
Q ss_pred ccchhhHHHHHhhcc
Q psy3984 157 QGRDKYKTLREIRKG 171 (183)
Q Consensus 157 ~G~dKy~Tlr~ir~G 171 (183)
+||..|..|++|+-|
T Consensus 8 rGRe~yEml~ki~d~ 22 (31)
T 1aie_A 8 RGRERFEMFRELNEA 22 (31)
T ss_dssp CSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 699999999999754
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.03 E-value=95 Score=27.38 Aligned_cols=43 Identities=26% Similarity=0.243 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy3984 10 NMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVE 52 (183)
Q Consensus 10 ~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~ 52 (183)
.+-.++...+.+..+....++.+...+.+.+.++.+.++++..
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENI 547 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhH
Confidence 3444444455555555555555555555554444444444433
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.03 E-value=1.3e+02 Score=33.48 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy3984 5 LEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMN 65 (183)
Q Consensus 5 l~~~~~~~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak 65 (183)
++.......+.-....++|++.+.+|+.|+.+=+..-.|+..|+.++..+ +.++.+|.
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~---~~kl~rA~ 2076 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKV---KNKVDRSI 2076 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 44444555555566677899999999999999888888999999998888 66665553
No 7
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=37.06 E-value=9.1 Score=23.90 Aligned_cols=12 Identities=67% Similarity=1.082 Sum_probs=8.5
Q ss_pred HHHhhcc-chhhH
Q psy3984 152 RENVKQG-RDKYK 163 (183)
Q Consensus 152 ~en~~~G-~dKy~ 163 (183)
.+++|+| ||||.
T Consensus 36 RE~mRq~IRdKY~ 48 (49)
T 1kil_E 36 REVMRQGIRDKYG 48 (49)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 5677777 77874
No 8
>3zy0_A Tumor protein P63; transcription, transcription factor, tetramerization domain, cycle control; HET: MSE; 1.90A {Homo sapiens}
Probab=36.61 E-value=12 Score=21.48 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=12.8
Q ss_pred ccchhhHHHHHhhcc
Q psy3984 157 QGRDKYKTLREIRKG 171 (183)
Q Consensus 157 ~G~dKy~Tlr~ir~G 171 (183)
+||..|..|++|+-|
T Consensus 11 rGRe~ye~l~ki~e~ 25 (32)
T 3zy0_A 11 RGRETYEMLLKIKES 25 (32)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHH
Confidence 599999999998753
No 9
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=33.71 E-value=30 Score=24.04 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhhcccc------hh--hcchhHHhHHHHh
Q psy3984 122 ERLQDQLKMLKEDLAGTRD------ET--KETAMDKIHRENV 155 (183)
Q Consensus 122 k~LQ~QLk~LksEl~~lkd------e~--k~t~~D~lh~en~ 155 (183)
..|+.+...|.++|..++. .+ -..+++.||..|-
T Consensus 11 ~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNe 52 (85)
T 3viq_B 11 HLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNE 52 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhH
Confidence 4566666666666655542 22 2568999998774
No 10
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.87 E-value=59 Score=20.60 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=18.8
Q ss_pred HHHHHH-hhHHHHHHHHHHHhhhhcccc
Q psy3984 114 RRTLAE-RNERLQDQLKMLKEDLAGTRD 140 (183)
Q Consensus 114 R~t~aE-Knk~LQ~QLk~LksEl~~lkd 140 (183)
++..++ .|..|..++..|+.++..|+.
T Consensus 30 ~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 30 KVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333 777888888888888887763
No 11
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=29.52 E-value=49 Score=22.44 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=20.7
Q ss_pred HHHHHHH-hhHHHHHHHHHHHhhhhcccc
Q psy3984 113 ERRTLAE-RNERLQDQLKMLKEDLAGTRD 140 (183)
Q Consensus 113 eR~t~aE-Knk~LQ~QLk~LksEl~~lkd 140 (183)
.++..++ .|..|..++..|+.|+..||.
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555 788888888888888887753
No 12
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=27.67 E-value=85 Score=17.52 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q psy3984 18 KLEEEIQAKQEEVQRIQSEVNS 39 (183)
Q Consensus 18 ~L~~e~~~~~~~i~~l~ee~e~ 39 (183)
+|+++++.+..-|+.|++-..+
T Consensus 3 rlee~~r~l~~ivq~lq~r~dr 24 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDR 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777766666654443
No 13
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=27.53 E-value=54 Score=22.70 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=20.6
Q ss_pred HHHHHHH-hhHHHHHHHHHHHhhhhcccc
Q psy3984 113 ERRTLAE-RNERLQDQLKMLKEDLAGTRD 140 (183)
Q Consensus 113 eR~t~aE-Knk~LQ~QLk~LksEl~~lkd 140 (183)
.|+..++ .|..|..++..|+.|+..|+.
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ 71 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRN 71 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555 788888888888888887764
No 14
>1olg_A Tumor suppressor P53 (oligomerization domain); anti-oncogene; NMR {Homo sapiens} SCOP: a.53.1.1 PDB: 1olh_A 1sae_A 1saf_A 1sag_A 1sah_A 1sai_A 1saj_A 1sak_A 1sal_A 3sak_A
Probab=26.25 E-value=21 Score=21.62 Aligned_cols=15 Identities=27% Similarity=0.866 Sum_probs=12.9
Q ss_pred ccchhhHHHHHhhcc
Q psy3984 157 QGRDKYKTLREIRKG 171 (183)
Q Consensus 157 ~G~dKy~Tlr~ir~G 171 (183)
.||..|..|++|+-|
T Consensus 15 rGRe~yEml~ki~es 29 (42)
T 1olg_A 15 RGRERFEMFRELNEA 29 (42)
T ss_dssp ESHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHH
Confidence 699999999999754
No 15
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=25.87 E-value=1.7e+02 Score=20.32 Aligned_cols=43 Identities=2% Similarity=0.163 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy3984 12 EAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENA 54 (183)
Q Consensus 12 ~~~ek~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~A 54 (183)
-..+++........++..+...+......+.+...|+..+...
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~l 56 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVT 56 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444444
No 16
>2wqi_A Tumor protein P73; tumor suppression, transcription factor, tetramer, oligomerization domain, DNA-binding, cooperativity, transcription; 1.70A {Homo sapiens} PDB: 2wtt_A 2kby_A 2wqj_A
Probab=24.24 E-value=25 Score=22.20 Aligned_cols=15 Identities=20% Similarity=0.725 Sum_probs=12.8
Q ss_pred ccchhhHHHHHhhcc
Q psy3984 157 QGRDKYKTLREIRKG 171 (183)
Q Consensus 157 ~G~dKy~Tlr~ir~G 171 (183)
.||..|..|++|+-+
T Consensus 12 RGRe~yEml~ki~es 26 (51)
T 2wqi_A 12 RGRENFEILMKLKES 26 (51)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHH
Confidence 699999999998753
No 17
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=24.06 E-value=21 Score=23.32 Aligned_cols=16 Identities=56% Similarity=0.897 Sum_probs=11.7
Q ss_pred HHHHhhcc-chhhHHHH
Q psy3984 151 HRENVKQG-RDKYKTLR 166 (183)
Q Consensus 151 h~en~~~G-~dKy~Tlr 166 (183)
-.+++|+| ||||..-+
T Consensus 38 ERE~mRQ~IRdKY~ikK 54 (63)
T 3rk3_E 38 EREAVRQGIRDKYGIKK 54 (63)
T ss_dssp HHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhccch
Confidence 46788998 89997644
No 18
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.97 E-value=1.1e+02 Score=17.74 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy3984 14 AERAKLEEEIQAKQEEVQRIQSEV 37 (183)
Q Consensus 14 ~ek~~L~~e~~~~~~~i~~l~ee~ 37 (183)
.|.++|-.+|..+..+|++|.++-
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN 30 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKEN 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788888999999998887753
No 19
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=23.61 E-value=4.6e+02 Score=25.72 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q psy3984 17 AKLEEEIQAKQEEVQRIQSEVNSKDEETK 45 (183)
Q Consensus 17 ~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~ 45 (183)
..+..++..++.++..++++-.+-..|..
T Consensus 980 ~~~~~~v~~L~~e~~~l~~~~~~~~ke~~ 1008 (1080)
T 2dfs_A 980 KNATNRVLSLQEEIAKLRKELHQTQTEKK 1008 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333333
No 20
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.25 E-value=1.8e+02 Score=19.71 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy3984 44 TKRLQEEVENARNARKKQDEMNAALL 69 (183)
Q Consensus 44 a~~lq~el~~Ar~ae~~~~~ak~~L~ 69 (183)
...++..|..++..+. .++.+|.
T Consensus 29 v~~le~~Le~s~~~q~---~~~~Elk 51 (79)
T 3cvf_A 29 LRAMERSLEEARAERE---RARAEVG 51 (79)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3455556666633333 4444443
No 21
>3zy1_A Tumor protein 63; transcription, transcription factor, tetramerization domain, cycle control; 2.15A {Homo sapiens}
Probab=23.01 E-value=27 Score=21.55 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=12.8
Q ss_pred ccchhhHHHHHhhcc
Q psy3984 157 QGRDKYKTLREIRKG 171 (183)
Q Consensus 157 ~G~dKy~Tlr~ir~G 171 (183)
.||..|..|++|+-|
T Consensus 11 rGRe~yE~l~ki~e~ 25 (46)
T 3zy1_A 11 RGRETYEMLLKIKES 25 (46)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred echhhHHHHHHHHHH
Confidence 599999999998754
No 22
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=22.66 E-value=2.3e+02 Score=20.84 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy3984 19 LEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAA 67 (183)
Q Consensus 19 L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ae~~~~~ak~~ 67 (183)
++-++-....++..|....+....|...|+.+|..+ +...+.++.+
T Consensus 66 iadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~---~~k~e~~~~e 111 (138)
T 3hnw_A 66 IADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAA---QIKAESSAKE 111 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 344555666666777777777777888888888887 4433344433
No 23
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=22.49 E-value=23 Score=24.12 Aligned_cols=16 Identities=44% Similarity=0.711 Sum_probs=11.5
Q ss_pred HHHHhhcc-chhhHHHH
Q psy3984 151 HRENVKQG-RDKYKTLR 166 (183)
Q Consensus 151 h~en~~~G-~dKy~Tlr 166 (183)
-.+++|+| ||||..=+
T Consensus 42 ERE~mRq~IRdKY~ikK 58 (79)
T 1l4a_E 42 EREEMRQTIRDKYGLKK 58 (79)
T ss_dssp HHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHhcccc
Confidence 35788888 89997543
No 24
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=21.29 E-value=1.1e+02 Score=16.44 Aligned_cols=19 Identities=32% Similarity=0.517 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy3984 16 RAKLEEEIQAKQEEVQRIQ 34 (183)
Q Consensus 16 k~~L~~e~~~~~~~i~~l~ 34 (183)
..+|-++|+.++.+|+.|+
T Consensus 9 narlkqeiaaleyeiaale 27 (28)
T 3ra3_B 9 NARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHhc
Confidence 4678888888888887663
No 25
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.22 E-value=2e+02 Score=19.57 Aligned_cols=41 Identities=29% Similarity=0.451 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q psy3984 16 RAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARN 56 (183)
Q Consensus 16 k~~L~~e~~~~~~~i~~l~ee~e~k~~Ea~~lq~el~~Ar~ 56 (183)
=.+|+++|..+-..|..|+.+.+.=-.+...|.++...++.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777776666666665555555555565555544
No 26
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=20.74 E-value=63 Score=17.39 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHhhhhccc
Q psy3984 120 RNERLQDQLKMLKEDLAGTR 139 (183)
Q Consensus 120 Knk~LQ~QLk~LksEl~~lk 139 (183)
-|..|.+.+-+|+..|+++|
T Consensus 8 endaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhc
Confidence 45678888899999988875
No 27
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=20.63 E-value=69 Score=21.88 Aligned_cols=33 Identities=30% Similarity=0.545 Sum_probs=26.6
Q ss_pred HHHHH----HHHhhHHHHHHHHHHHhhhhcccchhhc
Q psy3984 112 EERRT----LAERNERLQDQLKMLKEDLAGTRDETKE 144 (183)
Q Consensus 112 eeR~t----~aEKnk~LQ~QLk~LksEl~~lkde~k~ 144 (183)
+.|+. .++-|++|...+..+..+|..+|.+++.
T Consensus 23 E~RR~AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~ 59 (79)
T 2zxx_A 23 EQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKD 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45553 5568999999999999999999887664
Done!