RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3984
(183 letters)
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 122 bits (306), Expect = 6e-33
Identities = 126/187 (67%), Positives = 144/187 (77%), Gaps = 7/187 (3%)
Query: 1 MMERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKK 60
MM+RLEE+KNMEAAER KLE+EI+AKQEEV RIQ EV KD ET+RLQEEVE+AR +K
Sbjct: 392 MMQRLEETKNMEAAERQKLEDEIRAKQEEVSRIQQEVELKDSETRRLQEEVEDAR---RK 448
Query: 61 QDEMNAALLMATSTPQHHHVEENEHDENDDNMLNGHVSRD----LDTDDNIVDPVEERRT 116
QDE AALL AT+ HH E + D + DN + D++VDPV +RRT
Sbjct: 449 QDEAAAALLAATTPQHHHVAERADTDPDHDNASDAGSESGGGDLARGPDDLVDPVADRRT 508
Query: 117 LAERNERLQDQLKMLKEDLAGTRDETKETAMDKIHRENVKQGRDKYKTLREIRKGNTKRR 176
LAERNERL +QLK LK+DLA + DETKETAMDKIHRENV+QGRDKYKTLREIRKGNTKRR
Sbjct: 509 LAERNERLHNQLKALKQDLARSCDETKETAMDKIHRENVRQGRDKYKTLREIRKGNTKRR 568
Query: 177 VDQFENM 183
VDQFENM
Sbjct: 569 VDQFENM 575
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A
{Homo sapiens} SCOP: a.137.5.1
Length = 90
Score = 69.7 bits (170), Expect = 2e-16
Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 1/90 (1%)
Query: 95 GHVSRDLDTDDNIVDPVE-ERRTLAERNERLQDQLKMLKEDLAGTRDETKETAMDKIHRE 153
S DL D D E ER T AE+NER+Q LK L +LA RDE+K+TA D IH E
Sbjct: 1 AEASADLRADAMAKDRSEEERTTEAEKNERVQKHLKALTSELANARDESKKTANDMIHAE 60
Query: 154 NVKQGRDKYKTLREIRKGNTKRRVDQFENM 183
N++ GRDKYKTLR+IR+GNTK+R+D+FE+M
Sbjct: 61 NMRLGRDKYKTLRQIRQGNTKQRIDEFESM 90
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 49.3 bits (118), Expect = 2e-07
Identities = 26/138 (18%), Positives = 52/138 (37%), Gaps = 12/138 (8%)
Query: 2 MERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQ 61
M LE + + E + E ++ +EE + + V S EE +L++E+ + +K
Sbjct: 951 MNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010
Query: 62 DEMNAALLMATSTPQHHHVEENEHDENDDNMLNGHVSRDLDTDDNIVDPVEERRTLAERN 121
+E T E+N + + LN + + +
Sbjct: 1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD------------QAKEITETME 1058
Query: 122 ERLQDQLKMLKEDLAGTR 139
++L ++ K L+ DL R
Sbjct: 1059 KKLVEETKQLELDLNDER 1076
Score = 42.4 bits (100), Expect = 4e-05
Identities = 25/183 (13%), Positives = 70/183 (38%), Gaps = 8/183 (4%)
Query: 1 MMERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKK 60
M +R + +EA + ++ + ++ ++Q +++ +++E K L E++ N
Sbjct: 901 MAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960
Query: 61 QDEMNAALLMATSTPQHHHVEENEHDENDDNMLNGHVSRDLDTDDNIVDPVEERRTLAER 120
+ E + + E +N N + + E++T+ E
Sbjct: 961 ETEKLRSDVERLR-------MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEW 1013
Query: 121 NERLQDQLKMLKEDLAGTRDETKETAMDKIHRENVKQGRDKYKTLREIRKGNTKRRVDQF 180
++ + + + L +L K ++++R Q ++ +T+ + TK+
Sbjct: 1014 ADKYKHETEQLVSELKEQNTLLKTE-KEELNRRIHDQAKEITETMEKKLVEETKQLELDL 1072
Query: 181 ENM 183
+
Sbjct: 1073 NDE 1075
Score = 30.5 bits (69), Expect = 0.35
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 1 MMERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENAR 55
++ L+E + E+ +L I + +E+ ++ EETK+L+ ++ + R
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETMEKKLVEETKQLELDLNDER 1076
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 45.2 bits (107), Expect = 4e-06
Identities = 29/176 (16%), Positives = 72/176 (40%), Gaps = 1/176 (0%)
Query: 1 MMERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKK 60
++L+ K + LEE+++ ++ Q++Q E + D + K++++++ + K
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 61 QDEMNAALLMATSTPQHHHVEENEHDENDDNMLNGHVSRDLDTDDNIVDPVEERRTLAER 120
+ L S + EE E +N + N H S + + + + R+ L +
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 121 NERLQDQLKMLKEDLAGTRDETKETAMDKIHREN-VKQGRDKYKTLREIRKGNTKR 175
+L+ + L E +A + + E +E ++ + + + K+
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117
Score = 36.4 bits (84), Expect = 0.004
Identities = 21/186 (11%), Positives = 73/186 (39%), Gaps = 6/186 (3%)
Query: 1 MMERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKK 60
+ EE + AA++ +LEE + + ++ + E K++Q+++ + ++
Sbjct: 907 LYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966
Query: 61 QDEMNAALLMATSTPQHHH---VEENEHDENDDNMLNGHVSRDLDTDDNIVDPVEERRTL 117
++ L + T ++ E+ +N L + ++ + E
Sbjct: 967 EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Query: 118 AERNERLQDQLKMLKEDLAGTRDETKETAMDKIHRENVKQGRDKYKTLREIRKGNTKRRV 177
A+ +L+++ + + +L + +++ + E +K+ + + + + ++
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQEL---EKIKRKLEGESSDLHEQIAELQAQI 1083
Query: 178 DQFENM 183
+ +
Sbjct: 1084 AELKAQ 1089
Score = 36.0 bits (83), Expect = 0.005
Identities = 9/55 (16%), Positives = 28/55 (50%)
Query: 14 AERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAAL 68
+ + L+E++++++ + + + EE + L+ E+E+ + Q E+ +
Sbjct: 1123 SHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177
Score = 32.1 bits (73), Expect = 0.084
Identities = 10/68 (14%), Positives = 26/68 (38%)
Query: 1 MMERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKK 60
+ L+ + E ++ + + ++ + LQE++E+ + AR K
Sbjct: 1082 QIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNK 1141
Query: 61 QDEMNAAL 68
++ L
Sbjct: 1142 AEKQKRDL 1149
Score = 31.3 bits (71), Expect = 0.17
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 2 MERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQE 49
+ L+E E A R K E++ + EE++ +++E+ + T QE
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQE 1172
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 33.0 bits (76), Expect = 0.037
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 13 AAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKK 60
A++ A L+E+I A +E++ ++ ++ + K L E + R+
Sbjct: 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRT 49
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 31.6 bits (72), Expect = 0.12
Identities = 21/151 (13%), Positives = 53/151 (35%), Gaps = 11/151 (7%)
Query: 4 RLEESKNMEAAERAKLEE-EIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQD 62
++ E ++ Q +V++I ++ E R+ EEV + +K+ +
Sbjct: 127 SYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQ---SPVELSRMFEEVSGSIQYKKEYE 183
Query: 63 EMNAALLMATSTPQHHHVEENEHDENDDNMLNGHVSRDLDTDDNIVDPVEERRTLAERNE 122
E+ + + + E ++ L + S L+ R E
Sbjct: 184 ELKEKIEKLSKSAT----ESIKNRRRIHGELKTYKSPGLEVLFQG-PRGSRYDEAEGRFE 238
Query: 123 RLQDQLKMLKEDLAGTRDETKETAMDKIHRE 153
+ ++ + LK + ++ + + K +E
Sbjct: 239 VINNETEQLKAEEKKILNQFLK--IKKKRKE 267
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 31.3 bits (72), Expect = 0.16
Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 3 ERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVEN 53
ER + SK + +R ++ Q V+ ++ E++ +EE ++++EE++N
Sbjct: 52 ERNKLSKEIGKLKREG--KDTTEIQNRVKELKEEIDRLEEELRKVEEELKN 100
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 31.0 bits (71), Expect = 0.20
Identities = 6/52 (11%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 3 ERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENA 54
ER + + + + E + + + I + + E + L+++++
Sbjct: 53 ERNKIAVEIGKRRKKG--EPVDELLAKSREIVKRIGELENEVEELKKKIDYY 102
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 0.20
Identities = 10/69 (14%), Positives = 15/69 (21%), Gaps = 22/69 (31%)
Query: 70 MATSTPQHHHVEENEHDENDDNMLN----GHVSRDLDTD----------------DNIVD 109
M T N + +L + D +VD
Sbjct: 1 MMTRESIDK--RAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKLVD 58
Query: 110 PVEERRTLA 118
E RT +
Sbjct: 59 TRSEWRTFS 67
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.30
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 8/28 (28%)
Query: 113 ERRTLAERNERLQDQLKMLKED----LA 136
E++ L ++LQ LK+ +D LA
Sbjct: 18 EKQAL----KKLQASLKLYADDSAPALA 41
Score = 26.8 bits (58), Expect = 3.2
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 2 MERLEESKNMEAAERA-KLEEEIQAKQE 28
+++L+ S + A + A L I+A E
Sbjct: 22 LKKLQASLKLYADDSAPAL--AIKATME 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.33
Identities = 30/154 (19%), Positives = 44/154 (28%), Gaps = 32/154 (20%)
Query: 33 IQSEVNSKDEETKRLQEEVENARNARKKQDEMNAALLMATSTP-------QH--HHVEEN 83
I E+ K E L + + N K D + P H HH++
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDD------LIPPYLDQYFYSHIGHHLKNI 484
Query: 84 EHDENDDNMLNGHVSRDLDTDDNIVDPVEERRTLAERNER------LQDQLKMLKE---D 134
EH E R + D ++ + R N LQ LK K D
Sbjct: 485 EHPERMTLF------RMVFLDFRFLE-QKIRHDSTAWNASGSILNTLQQ-LKFYKPYICD 536
Query: 135 LAGTRDETKETAMDKIHRENVKQGRDKYKTLREI 168
+ +D + + KY L I
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 29.8 bits (67), Expect = 0.43
Identities = 10/69 (14%), Positives = 22/69 (31%)
Query: 18 KLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAALLMATSTPQH 77
++ +Q EEV+ ++ S D + + L E + + + + S P
Sbjct: 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQ 61
Query: 78 HHVEENEHD 86
Sbjct: 62 DTTANKISP 70
Score = 27.8 bits (62), Expect = 1.9
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 2 MERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENAR 55
+ LE+ A+ +L E + Q+ V R+Q ++ + R ++ +
Sbjct: 14 VRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQDTTANK 67
>3hhf_B Transcriptional regulator, LYSR family; transcription factor,
structur genomics, oxford protein production facility,
OPPF; 2.30A {Neisseria meningitidis serogroup B}
Length = 213
Score = 29.4 bits (67), Expect = 0.43
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 96 HVSRDLDTDDNIVDPVEERRTLAERNERLQD 126
H+ L + + ++ +E + +A R L D
Sbjct: 35 HIRLSLVSSEGYINLIERKVDIALRAGELDD 65
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 29.4 bits (67), Expect = 0.57
Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 3 ERLEESKNMEAAERAKLE-EEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENA 54
+ ++ +N A K EE +A + + E +E + + +E
Sbjct: 45 QEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 29.6 bits (67), Expect = 0.57
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 3 ERLEESKNM------EAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENA 54
E N + A + + V+ +++E+ +++ K Q+++E
Sbjct: 149 SYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAKDNQQKLEAL 206
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 29.4 bits (66), Expect = 0.58
Identities = 8/60 (13%), Positives = 18/60 (30%)
Query: 18 KLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAALLMATSTPQH 77
K+ EEI + + S + E +++ N + + + T
Sbjct: 1 KMLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHD 60
Score = 25.9 bits (57), Expect = 8.6
Identities = 11/58 (18%), Positives = 22/58 (37%)
Query: 27 QEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAALLMATSTPQHHHVEENE 84
EE+ + ++ + + D + LQE + E A L P V+ ++
Sbjct: 3 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQEPCKDTVQIHD 60
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 29.2 bits (66), Expect = 0.88
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 21 EEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDEMNAALLMATSTPQHHHV 80
+ AK EE+ + + + + + E + A + + E + MA
Sbjct: 604 AKYIAKYEELASLGNIIRGR------YLAKEEEKKQAIRSKQEASQMAAMAEKLAAQRKA 657
Query: 81 EENEHDENDD 90
E + +E D
Sbjct: 658 EAEKKEEKKD 667
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 28.3 bits (64), Expect = 1.5
Identities = 8/63 (12%), Positives = 16/63 (25%), Gaps = 17/63 (26%)
Query: 13 AAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEE--VENA-----RNARKKQDEMN 65
R + E+ ++ +R Q ++L E A + E
Sbjct: 799 EEWRRRQEKRLKELLALAERSQ----------RKLASPGFREKAPKEVVEAEEARLKENL 848
Query: 66 AAL 68
Sbjct: 849 EQA 851
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 28.3 bits (64), Expect = 1.5
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 8 SKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEE 50
SKN+ + E A+L++ + +E+ R DEE + +Q+E
Sbjct: 332 SKNVSSKEVARLKKLVSYWKEQAGR-----KGDDEELEEIQDE 369
>3hhg_A Transcriptional regulator, LYSR family; transcription factor,
structur genomics, oxford protein production facility,
OPPF; 3.20A {Neisseria meningitidis serogroup B}
Length = 306
Score = 27.9 bits (63), Expect = 1.8
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 96 HVSRDLDTDDNIVDPVEERRTLAERNERLQD 126
H+ L + + ++ +E + +A R L D
Sbjct: 121 HIRLSLVSSEGYINLIERKVDIALRAGELDD 151
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 2.0
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 3 ERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQD 62
+RL+E ++AA + +E + +++++ + + E+ K + A + D
Sbjct: 96 KRLQE---LDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 27.0 bits (59), Expect = 3.1
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 13 AAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQDE 63
A+R E E K E QR + + D +K +++E A+K +E
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQE--LDAASKVMEQEWREK--AKKDLEE 122
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 27.6 bits (62), Expect = 2.3
Identities = 6/58 (10%), Positives = 23/58 (39%), Gaps = 6/58 (10%)
Query: 3 ERLEESKNMEAAERAK------LEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENA 54
E+ ++ + A + + + Q+ + + I+ ++ + +L+E+
Sbjct: 92 EKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 26.9 bits (60), Expect = 3.2
Identities = 10/50 (20%), Positives = 23/50 (46%)
Query: 6 EESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENAR 55
+N + + +E QA +E ++ + E+ ++ RL + +N R
Sbjct: 4 RNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYR 53
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.1 bits (59), Expect = 3.4
Identities = 12/64 (18%), Positives = 29/64 (45%)
Query: 1 MMERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKK 60
M + E + + E E+Q + E++++ + + EE +R E+ + A+++
Sbjct: 338 MEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQR 397
Query: 61 QDEM 64
E
Sbjct: 398 ILEQ 401
>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid
synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A*
3tdc_A*
Length = 793
Score = 27.5 bits (61), Expect = 3.4
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 105 DNIVDPVEERRTLAERNERLQDQLKMLKE 133
+I++ R L R RL + ++ +E
Sbjct: 649 YDILEWKTARSFLYWRLRRLLLESQVKQE 677
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock
protein, protein binding; 2.75A {Mus musculus}
Length = 320
Score = 27.3 bits (60), Expect = 3.6
Identities = 5/34 (14%), Positives = 13/34 (38%)
Query: 3 ERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSE 36
+ + L+ +IQ E++ R+ +
Sbjct: 284 LNEDVFTPPAPSPAPSLDSDIQELSEQIHRLLLQ 317
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 26.6 bits (58), Expect = 5.6
Identities = 11/74 (14%), Positives = 22/74 (29%), Gaps = 16/74 (21%)
Query: 16 RAKLEEEIQAKQEEVQRIQSEVNS---KDEETKRLQEEVEN--------ARN-----ARK 59
++ ++ + +V + K E L+E E AR+ A
Sbjct: 682 MKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEH 741
Query: 60 KQDEMNAALLMATS 73
+ N M +
Sbjct: 742 SLKDSNNVKQMVAA 755
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase,
glutaminase, thioester intermediate, ligas; HET: ADP;
1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A*
3umm_A*
Length = 1303
Score = 26.5 bits (58), Expect = 5.7
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 1 MMERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSE----VNSK----DEETKRLQ 48
MME L S + A KL QA +V I +E + D E +L
Sbjct: 9 MMEILRGSPALSAFRINKLLARFQAANLQVHNIYAEYVHFADLNAPLNDSEQAQLT 64
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 26.3 bits (57), Expect = 7.3
Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 2 MERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKKQ 61
+++ AE A++E E Q +++ Q+ + E +R+++ E + Q
Sbjct: 718 STGNAKAEAESRAEAARIEGEGSVLQAKLKA-QALAIETEAELERVKKVREMELIYARAQ 776
Query: 62 DEMNAA 67
E+ +
Sbjct: 777 LELEVS 782
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial
promoter opening, G-quartet, quadruplex, DNA binding;
2.10A {Thermus aquaticus} PDB: 3ugp_A 1ku2_A 3lev_A*
3les_A*
Length = 245
Score = 26.0 bits (57), Expect = 7.5
Identities = 11/65 (16%), Positives = 23/65 (35%)
Query: 1 MMERLEESKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARNARKK 60
+ E + A + + + + V+ + ++ S +E KR AR+
Sbjct: 55 IREVVRAKILGTARIQKIPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQH 114
Query: 61 QDEMN 65
E N
Sbjct: 115 LIEAN 119
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal
transduction, photocycle ST membrane protein; HET: BOG
RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Length = 163
Score = 25.4 bits (55), Expect = 9.6
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 36 EVNSKDEE----------TKRLQEEVENARNARKKQDEMNAALLMATSTPQHHH 79
E +DE + ++ +E+A+NAR+ ++ + HHH
Sbjct: 107 ETRREDEIGDLYAAFDEMRQSVRTSLEDAKNAREDAEQAQKRAEEINTNSHHHH 160
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.306 0.123 0.317
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,677,887
Number of extensions: 154761
Number of successful extensions: 751
Number of sequences better than 10.0: 1
Number of HSP's gapped: 668
Number of HSP's successfully gapped: 239
Length of query: 183
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 95
Effective length of database: 4,244,745
Effective search space: 403250775
Effective search space used: 403250775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 54 (24.5 bits)