RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3984
         (183 letters)



>d1ef1c_ a.137.5.1 (C:) Moesin tail domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 90

 Score = 82.2 bits (203), Expect = 1e-21
 Identities = 51/90 (56%), Positives = 64/90 (71%), Gaps = 1/90 (1%)

Query: 95  GHVSRDLDTDDNIVDPVEERR-TLAERNERLQDQLKMLKEDLAGTRDETKETAMDKIHRE 153
              S DL  D    D  EE R T AE+NER+Q  LK L  +LA  RDE+K+TA D IH E
Sbjct: 1   AEASADLRADAMAKDRSEEERTTEAEKNERVQKHLKALTSELANARDESKKTANDMIHAE 60

Query: 154 NVKQGRDKYKTLREIRKGNTKRRVDQFENM 183
           N++ GRDKYKTLR+IR+GNTK+R+D+FE+M
Sbjct: 61  NMRLGRDKYKTLRQIRQGNTKQRIDEFESM 90


>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
           (Solanum tuberosum) [TaxId: 4113]}
          Length = 364

 Score = 29.6 bits (65), Expect = 0.19
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 8   SKNMEAAERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEE 50
           SKN+ + E A+L++ +   +E+  R        DEE + +Q+E
Sbjct: 327 SKNVSSKEVARLKKLVSYWKEQAGRKG-----DDEELEEIQDE 364


>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B
           subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 271

 Score = 26.6 bits (58), Expect = 1.5
 Identities = 9/60 (15%), Positives = 23/60 (38%)

Query: 70  MATSTPQHHHVEENEHDENDDNMLNGHVSRDLDTDDNIVDPVEERRTLAERNERLQDQLK 129
            A +      +      E +D ++N +V+ +    D ++ P   R  +      L+ ++ 
Sbjct: 200 AAANGEDIDKLRLRLQQEYEDTLVNPYVAAERGYVDAVIPPSHTRGYIGTALRLLERKIA 259


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 26.8 bits (59), Expect = 1.8
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 15  ERAKLEEEIQAKQEEVQRIQSEVNSKDEETKRLQEEVENARN 56
           E  KL +E +   +++  +   + S D   + ++EE+E  R 
Sbjct: 441 EHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVRE 482


>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 404

 Score = 25.7 bits (56), Expect = 4.2
 Identities = 7/48 (14%), Positives = 18/48 (37%)

Query: 105 DNIVDPVEERRTLAERNERLQDQLKMLKEDLAGTRDETKETAMDKIHR 152
              ++  E RR    R  R  ++  ++K       + ++   + +I  
Sbjct: 296 SKELEWTEARRFFFWRLRRRLNEEYLIKRLSHQVGEASRLEKIARIRS 343


>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus
           thermophilus [TaxId: 274]}
          Length = 118

 Score = 23.9 bits (52), Expect = 9.6
 Identities = 10/31 (32%), Positives = 13/31 (41%)

Query: 134 DLAGTRDETKETAMDKIHRENVKQGRDKYKT 164
           DL G R        D    ++ K+ R KY T
Sbjct: 88  DLPGVRYHIVRGVYDAAGVKDRKKSRSKYGT 118


>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase
           (transcarboxylase 12S) {Propionibacterium freudenreichii
           [TaxId: 1744]}
          Length = 264

 Score = 24.3 bits (52), Expect = 9.9
 Identities = 8/47 (17%), Positives = 20/47 (42%)

Query: 73  STPQHHHVEENEHDENDDNMLNGHVSRDLDTDDNIVDPVEERRTLAE 119
           +      +   + +E  +     +V+      D+++DP + RR +A 
Sbjct: 196 AADDPDAMRAEKIEEYQNAFNTPYVAAARGQVDDVIDPADTRRKIAS 242


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.306    0.123    0.317 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 613,741
Number of extensions: 26795
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 63
Length of query: 183
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 103
Effective length of database: 1,309,196
Effective search space: 134847188
Effective search space used: 134847188
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 50 (23.6 bits)