Query psy3987
Match_columns 175
No_of_seqs 81 out of 83
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 22:22:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3987.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3987hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rng_A BIG defensin; alpha-hel 0.3 5.3E+03 0.18 12.9 1.0 9 105-113 50-58 (79)
2 1lmr_A Toxin ADO1; ICK; NMR {A 0.2 8.2E+03 0.28 10.0 0.9 8 100-107 18-25 (35)
3 2ask_A Artemin; glial cell der 0.2 5.2E+03 0.18 13.2 -0.4 7 45-51 78-84 (113)
4 1kg1_A NIP1, necrosis inducing 0.2 5.3E+03 0.18 12.0 -0.3 7 169-175 25-31 (60)
5 3tvj_A Mannan-binding lectin s 0.2 7.5E+03 0.26 10.5 0.4 11 159-169 70-80 (86)
6 1agq_A GDNF, glial cell-derive 0.2 6.6E+03 0.23 13.2 0.1 7 45-51 100-106 (135)
7 1jni_A NAPB;, diheme cytochrom 0.2 7.1E+03 0.24 12.9 -0.1 7 167-173 97-103 (123)
8 1aqs_A Cu-MT, Cu-metallothione 0.2 9.9E+03 0.34 10.2 0.7 10 166-175 20-29 (53)
9 2kto_A LCHB; lichenicidin VK21 0.2 7.7E+03 0.26 10.0 0.0 12 1-12 21-32 (32)
10 2kvx_A Kalata-B12; plant prote 0.1 8.7E+03 0.3 9.4 0.1 7 128-134 19-25 (28)
No 1
>2rng_A BIG defensin; alpha-helices & beta-sheets, three disulfide bridges, antibiotic, antimicrobial, fungicide, secreted; NMR {Tachypleus tridentatus} PDB: 2rq2_A
Probab=0.33 E-value=5.3e+03 Score=12.90 Aligned_cols=9 Identities=33% Similarity=0.648 Sum_probs=5.5
Q ss_pred eeecCCCCC
Q psy3987 105 AVCQSVCGT 113 (175)
Q Consensus 105 ~cC~~tC~~ 113 (175)
.|||+.|..
T Consensus 50 GWCR~~Cfs 58 (79)
T 2rng_A 50 GWCRSKCFR 58 (79)
T ss_dssp EEEESSCCT
T ss_pred Ccccchhcc
Confidence 367777743
No 2
>1lmr_A Toxin ADO1; ICK; NMR {Agriosphodrus dohrni} SCOP: g.3.6.3
Probab=0.21 E-value=8.2e+03 Score=10.03 Aligned_cols=8 Identities=25% Similarity=0.899 Sum_probs=0.0
Q ss_pred cCccceee
Q psy3987 100 SVCGTAVC 107 (175)
Q Consensus 100 scC~p~cC 107 (175)
++|.++||
T Consensus 18 ~CC~~t~C 25 (35)
T 1lmr_A 18 QCCKGTTC 25 (35)
T ss_dssp CCCTTEEE
T ss_pred CccCchhH
No 3
>2ask_A Artemin; glial cell derived family ligand, neurotrphoic growth factor, sulfates, hormone/growth factor complex; 1.55A {Homo sapiens} PDB: 2gyz_A 2gyr_A 2gh0_C*
Probab=0.20 E-value=5.2e+03 Score=13.22 Aligned_cols=7 Identities=29% Similarity=0.681 Sum_probs=0.0
Q ss_pred CCCcccc
Q psy3987 45 QSVCGTA 51 (175)
Q Consensus 45 ~~cC~p~ 51 (175)
++||.|+
T Consensus 78 ~PCCvPt 84 (113)
T 2ask_A 78 QPCCRPT 84 (113)
T ss_dssp SCEEEEE
T ss_pred CCCccCc
No 4
>1kg1_A NIP1, necrosis inducing protein 1; antiparalel beta sheets, toxin; NMR {Rhynchosporium secalis} SCOP: g.70.1.1
Probab=0.20 E-value=5.3e+03 Score=11.98 Aligned_cols=7 Identities=57% Similarity=1.104 Sum_probs=0.0
Q ss_pred eeecCCC
Q psy3987 169 VCHVPTD 175 (175)
Q Consensus 169 ~C~~~~~ 175 (175)
.|+||.|
T Consensus 25 sclvpgd 31 (60)
T 1kg1_A 25 SCLVPGD 31 (60)
T ss_dssp CCBCCEE
T ss_pred ccccccc
No 5
>3tvj_A Mannan-binding lectin serine protease 2 A chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens}
Probab=0.18 E-value=7.5e+03 Score=10.53 Aligned_cols=11 Identities=45% Similarity=1.171 Sum_probs=0.0
Q ss_pred ccccCCcCCce
Q psy3987 159 AVCQSVCGTAV 169 (175)
Q Consensus 159 ~~C~~~Cc~~~ 169 (175)
|+|..+|..|.
T Consensus 70 P~C~~vCg~P~ 80 (86)
T 3tvj_A 70 PVCEPVCGLSA 80 (86)
T ss_dssp CCEEECCCCCC
T ss_pred CeeECcCCCCC
No 6
>1agq_A GDNF, glial cell-derived neurotrophic factor; growth factor, cystine knot; 1.90A {Rattus norvegicus} SCOP: g.17.1.2 PDB: 3fub_B* 2v5e_B*
Probab=0.18 E-value=6.6e+03 Score=13.20 Aligned_cols=7 Identities=29% Similarity=0.691 Sum_probs=0.0
Q ss_pred CCCcccc
Q psy3987 45 QSVCGTA 51 (175)
Q Consensus 45 ~~cC~p~ 51 (175)
++||.|+
T Consensus 100 ~PCCvPt 106 (135)
T 1agq_A 100 QACCRPV 106 (135)
T ss_dssp CCCEEEE
T ss_pred CCCccCe
No 7
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Probab=0.16 E-value=7.1e+03 Score=12.87 Aligned_cols=7 Identities=43% Similarity=0.862 Sum_probs=0.0
Q ss_pred CceeecC
Q psy3987 167 TAVCHVP 173 (175)
Q Consensus 167 ~~~C~~~ 173 (175)
++-||||
T Consensus 97 CtqCHVP 103 (123)
T 1jni_A 97 CLQCHVS 103 (123)
T ss_dssp GGGTCCC
T ss_pred cccccCC
No 8
>1aqs_A Cu-MT, Cu-metallothionein; copper detoxification, metal-thiolate cluster; NMR {Saccharomyces cerevisiae} SCOP: g.46.1.1
Probab=0.16 E-value=9.9e+03 Score=10.19 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=0.0
Q ss_pred CCceeecCCC
Q psy3987 166 GTAVCHVPTD 175 (175)
Q Consensus 166 c~~~C~~~~~ 175 (175)
++..|..||.
T Consensus 20 cqkscscptg 29 (53)
T 1aqs_A 20 CQKSCSCPTG 29 (53)
T ss_dssp STTSCSCCTT
T ss_pred HhhcCCCCCC
No 9
>2kto_A LCHB; lichenicidin VK21, lantibiotics, antibiotic, lanthioni thioester, two-component lantibiotic system; HET: 2KT DBU DBB; NMR {Bacillus licheniformis}
Probab=0.16 E-value=7.7e+03 Score=10.00 Aligned_cols=12 Identities=42% Similarity=0.866 Sum_probs=0.0
Q ss_pred CCccCCccCCCc
Q psy3987 1 SVCGTAVCQSVC 12 (175)
Q Consensus 1 ~~c~~tCC~~~C 12 (175)
++|-+|.|-+-|
T Consensus 21 a~CPTTKCtsrC 32 (32)
T 2kto_A 21 SLCPXXKCXSRC 32 (32)
T ss_dssp HHSTTSSSSSCC
T ss_pred eecccchhhccC
No 10
>2kvx_A Kalata-B12; plant protein; NMR {Oldenlandia affinis}
Probab=0.14 E-value=8.7e+03 Score=9.37 Aligned_cols=7 Identities=29% Similarity=1.137 Sum_probs=0.0
Q ss_pred CcCCCCC
Q psy3987 128 VCGTAVC 134 (175)
Q Consensus 128 sC~~~vC 134 (175)
+|+.+||
T Consensus 19 sC~~~vC 25 (28)
T 2kvx_A 19 SCNYPIC 25 (28)
T ss_dssp BCCTTEE
T ss_pred ccCCCeE
Done!