Query psy3987
Match_columns 175
No_of_seqs 81 out of 83
Neff 3.7
Searched_HMMs 13730
Date Fri Aug 16 22:22:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3987.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3987hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q3xa2 g.18.1.1 (A:366-440) M 0.3 3.1E+03 0.23 10.8 1.5 9 14-22 62-70 (75)
2 d2gvia2 g.39.1.18 (A:169-201) 0.2 2.5E+03 0.18 10.7 -0.6 8 13-20 23-30 (33)
3 d1tbrr2 g.68.1.1 (R:52-103) Bl 0.2 4.3E+03 0.32 9.6 0.7 8 13-20 14-21 (52)
4 d1xu2r_ g.24.1.2 (R:) Tumor ne 0.2 2.5E+03 0.19 11.0 -0.6 7 130-136 26-32 (36)
5 d2i9wa2 g.74.1.1 (A:1-39) Hypo 0.2 2.9E+03 0.21 10.8 -0.3 6 45-50 26-31 (39)
6 d1rutx4 g.39.1.3 (X:114-146) L 0.2 4.3E+03 0.31 9.6 0.5 5 171-175 9-13 (33)
7 d1g26a_ g.3.16.1 (A:) N-termin 0.1 3E+03 0.22 10.3 -0.5 6 4-9 13-18 (31)
8 d1nuba2 g.3.11.3 (A:53-77) Dom 0.1 4.6E+03 0.33 9.0 0.8 7 169-175 13-19 (26)
9 d1eyfa_ g.48.1.1 (A:) Ada DNA 0.1 5.4E+03 0.39 10.9 0.9 7 105-111 36-42 (92)
10 d2ho2a1 b.72.1.1 (A:253-285) A 0.1 5E+03 0.36 9.3 0.6 5 171-175 20-24 (33)
No 1
>d1q3xa2 g.18.1.1 (A:366-440) Mannan-binding lectin serine protease 2 (MASP-2) domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=0.29 E-value=3.1e+03 Score=10.76 Aligned_cols=9 Identities=56% Similarity=1.387 Sum_probs=4.1
Q ss_pred Cceeccccc
Q psy3987 14 TAVCQSVCG 22 (175)
Q Consensus 14 ~~~C~~~C~ 22 (175)
.|+|++.|+
T Consensus 62 ~p~C~pvCg 70 (75)
T d1q3xa2 62 LPVCEPVCG 70 (75)
T ss_dssp CCEEEECCC
T ss_pred CCeeeCCCC
Confidence 344554443
No 2
>d2gvia2 g.39.1.18 (A:169-201) Uncharacterized protein Ta1109 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=0.17 E-value=2.5e+03 Score=10.70 Aligned_cols=8 Identities=38% Similarity=0.870 Sum_probs=0.0
Q ss_pred cCceeccc
Q psy3987 13 GTAVCQSV 20 (175)
Q Consensus 13 ~~~~C~~~ 20 (175)
.+|+|.++
T Consensus 23 gkpvckpd 30 (33)
T d2gvia2 23 GKPVCKPD 30 (33)
T ss_dssp TEEECHHH
T ss_pred CCcccCcc
No 3
>d1tbrr2 g.68.1.1 (R:52-103) Blood-sucking insect-derived tryptase inhibitor {Bug (Rhodnius prolixus), rhodniin [TaxId: 13249]}
Probab=0.17 E-value=4.3e+03 Score=9.65 Aligned_cols=8 Identities=38% Similarity=0.401 Sum_probs=0.0
Q ss_pred cCceeccc
Q psy3987 13 GTAVCQSV 20 (175)
Q Consensus 13 ~~~~C~~~ 20 (175)
+.|||.++
T Consensus 14 ~~PVCGsD 21 (52)
T d1tbrr2 14 YKPVCGSD 21 (52)
T ss_dssp CCCEEETT
T ss_pred CcccCCCC
No 4
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=0.17 E-value=2.5e+03 Score=10.99 Aligned_cols=7 Identities=29% Similarity=0.539 Sum_probs=0.0
Q ss_pred CCCCCCC
Q psy3987 130 GTAVCQS 136 (175)
Q Consensus 130 ~~~vC~~ 136 (175)
++++||+
T Consensus 26 ppl~cq~ 32 (36)
T d1xu2r_ 26 PPLTCQR 32 (36)
T ss_dssp CCGGGHH
T ss_pred Cchhhhh
No 5
>d2i9wa2 g.74.1.1 (A:1-39) Hypothetical protein Psyc2064 {Psychrobacter arcticus [TaxId: 334543]}
Probab=0.17 E-value=2.9e+03 Score=10.84 Aligned_cols=6 Identities=33% Similarity=0.767 Sum_probs=0.0
Q ss_pred CCCccc
Q psy3987 45 QSVCGT 50 (175)
Q Consensus 45 ~~cC~p 50 (175)
|.+|+|
T Consensus 26 qdccqp 31 (39)
T d2i9wa2 26 QDCCQP 31 (39)
T ss_dssp GGTTHH
T ss_pred Hhhccc
No 6
>d1rutx4 g.39.1.3 (X:114-146) LIM only 4 (Lmo4) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=0.16 E-value=4.3e+03 Score=9.64 Aligned_cols=5 Identities=60% Similarity=0.846 Sum_probs=0.0
Q ss_pred ecCCC
Q psy3987 171 HVPTD 175 (175)
Q Consensus 171 ~~~~~ 175 (175)
+||.|
T Consensus 9 LVPGD 13 (33)
T d1rutx4 9 LVPGD 13 (33)
T ss_dssp CCTTC
T ss_pred ccCCc
No 7
>d1g26a_ g.3.16.1 (A:) N-terminal domain of granulin-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=0.14 E-value=3e+03 Score=10.31 Aligned_cols=6 Identities=33% Similarity=1.016 Sum_probs=0.0
Q ss_pred cCCccC
Q psy3987 4 GTAVCQ 9 (175)
Q Consensus 4 ~~tCC~ 9 (175)
++||||
T Consensus 13 g~TCCr 18 (31)
T d1g26a_ 13 GYTCCR 18 (31)
T ss_dssp TEEEEE
T ss_pred CCeeEe
No 8
>d1nuba2 g.3.11.3 (A:53-77) Domain of BM-40/SPARC/osteonectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=0.14 E-value=4.6e+03 Score=9.00 Aligned_cols=7 Identities=29% Similarity=0.880 Sum_probs=0.0
Q ss_pred eeecCCC
Q psy3987 169 VCHVPTD 175 (175)
Q Consensus 169 ~C~~~~~ 175 (175)
+|+|..+
T Consensus 13 vcevde~ 19 (26)
T d1nuba2 13 VCELDEN 19 (26)
T ss_dssp EEEECTT
T ss_pred EeeeCCC
No 9
>d1eyfa_ g.48.1.1 (A:) Ada DNA repair protein, N-terminal domain (N-Ada 10) {Escherichia coli [TaxId: 562]}
Probab=0.14 E-value=5.4e+03 Score=10.88 Aligned_cols=7 Identities=29% Similarity=1.103 Sum_probs=0.0
Q ss_pred eeecCCC
Q psy3987 105 AVCQSVC 111 (175)
Q Consensus 105 ~cC~~tC 111 (175)
.+|+++|
T Consensus 36 iyCrPsC 42 (92)
T d1eyfa_ 36 IFCRPSC 42 (92)
T ss_dssp EEECTTC
T ss_pred eeeCCcC
No 10
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=0.14 E-value=5e+03 Score=9.35 Aligned_cols=5 Identities=60% Similarity=1.285 Sum_probs=0.0
Q ss_pred ecCCC
Q psy3987 171 HVPTD 175 (175)
Q Consensus 171 ~~~~~ 175 (175)
||||.
T Consensus 20 HiptG 24 (33)
T d2ho2a1 20 HIPTG 24 (33)
T ss_dssp ETTTT
T ss_pred EecCC
Done!